Query 046638
Match_columns 306
No_of_seqs 493 out of 1396
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 04:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.5E-33 3.3E-37 240.6 32.5 289 2-296 278-580 (597)
2 4g26_A Pentatricopeptide repea 100.0 6.8E-33 2.3E-37 234.0 22.8 185 27-213 26-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.1E-31 3.9E-36 233.8 28.8 286 2-295 156-504 (597)
4 4g26_A Pentatricopeptide repea 100.0 1E-31 3.5E-36 226.8 20.3 200 44-245 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 4.2E-28 1.4E-32 200.5 32.2 283 5-294 76-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-27 8.9E-32 195.7 32.8 285 5-295 42-334 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 2E-26 6.8E-31 194.0 32.1 288 2-295 32-358 (450)
8 3ieg_A DNAJ homolog subfamily 99.9 7.8E-24 2.7E-28 172.5 33.3 288 3-295 10-335 (359)
9 2y4t_A DNAJ homolog subfamily 99.9 9.9E-24 3.4E-28 177.5 31.1 265 25-295 24-324 (450)
10 3hym_B Cell division cycle pro 99.9 2.1E-23 7E-28 168.2 29.2 263 26-294 21-298 (330)
11 2gw1_A Mitochondrial precursor 99.9 8.7E-24 3E-28 180.7 28.0 287 3-295 13-401 (514)
12 3hym_B Cell division cycle pro 99.9 4.4E-23 1.5E-27 166.3 30.5 278 3-283 29-322 (330)
13 1fch_A Peroxisomal targeting s 99.9 1.2E-23 4.1E-28 172.3 25.2 282 5-291 34-355 (368)
14 2gw1_A Mitochondrial precursor 99.9 2.3E-23 7.9E-28 178.0 26.7 289 3-295 46-478 (514)
15 4eqf_A PEX5-related protein; a 99.9 3E-23 1E-27 169.9 21.3 261 26-291 64-352 (365)
16 3ieg_A DNAJ homolog subfamily 99.9 3.5E-21 1.2E-25 156.8 31.9 264 26-295 2-301 (359)
17 3fp2_A TPR repeat-containing p 99.9 4.5E-22 1.5E-26 171.0 27.8 287 3-296 32-408 (537)
18 3cv0_A Peroxisome targeting si 99.9 2.3E-22 7.8E-27 161.9 23.1 262 26-293 20-313 (327)
19 3fp2_A TPR repeat-containing p 99.9 1.3E-21 4.6E-26 168.1 28.3 226 65-296 246-492 (537)
20 3mkr_A Coatomer subunit epsilo 99.9 5.5E-21 1.9E-25 151.3 28.7 268 5-287 8-286 (291)
21 1fch_A Peroxisomal targeting s 99.9 3.9E-22 1.3E-26 163.3 21.6 258 36-295 34-314 (368)
22 4eqf_A PEX5-related protein; a 99.9 2.2E-21 7.4E-26 158.9 22.5 233 61-295 64-310 (365)
23 1b89_A Protein (clathrin heavy 99.9 2.2E-23 7.5E-28 169.2 9.8 252 6-289 13-266 (449)
24 3mkr_A Coatomer subunit epsilo 99.9 5.4E-21 1.8E-25 151.3 21.5 247 34-295 6-264 (291)
25 3cv0_A Peroxisome targeting si 99.9 9.5E-21 3.2E-25 152.4 19.5 255 3-263 28-317 (327)
26 3uq3_A Heat shock protein STI1 99.9 4.5E-20 1.5E-24 143.3 22.2 237 27-274 5-255 (258)
27 3uq3_A Heat shock protein STI1 99.9 3E-19 1E-23 138.7 22.5 221 62-296 5-237 (258)
28 2pl2_A Hypothetical conserved 99.9 1.8E-19 6E-24 136.6 20.0 196 94-293 2-212 (217)
29 1b89_A Protein (clathrin heavy 99.8 4.6E-21 1.6E-25 155.7 10.7 259 2-289 38-305 (449)
30 3u4t_A TPR repeat-containing p 99.8 1.1E-18 3.7E-23 136.8 23.8 249 27-280 3-269 (272)
31 4g1t_A Interferon-induced prot 99.8 3.1E-18 1.1E-22 144.9 26.2 299 3-306 58-470 (472)
32 2h6f_A Protein farnesyltransfe 99.8 3E-18 1E-22 140.1 24.8 248 26-279 96-366 (382)
33 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.6E-18 5.5E-23 136.0 21.6 241 39-289 17-269 (275)
34 2xm6_A Protein corresponding t 99.8 9.9E-17 3.4E-21 136.4 33.9 16 40-55 128-143 (490)
35 1ouv_A Conserved hypothetical 99.8 2.1E-17 7.2E-22 129.7 27.6 227 25-265 4-255 (273)
36 2xm6_A Protein corresponding t 99.8 2.5E-16 8.4E-21 134.0 34.8 270 9-294 56-359 (490)
37 1ouv_A Conserved hypothetical 99.8 6E-17 2.1E-21 127.0 28.0 224 61-297 5-253 (273)
38 2pl2_A Hypothetical conserved 99.8 4.2E-18 1.4E-22 129.0 20.6 196 25-227 3-212 (217)
39 2ho1_A Type 4 fimbrial biogene 99.8 3.7E-17 1.3E-21 126.6 25.3 203 63-269 38-246 (252)
40 2q7f_A YRRB protein; TPR, prot 99.8 3.5E-18 1.2E-22 131.5 18.7 211 62-277 23-238 (243)
41 2ho1_A Type 4 fimbrial biogene 99.8 2.2E-17 7.5E-22 127.9 23.1 198 97-296 37-239 (252)
42 2vq2_A PILW, putative fimbrial 99.8 3.9E-17 1.3E-21 124.0 23.7 193 99-293 10-209 (225)
43 2h6f_A Protein farnesyltransfe 99.8 9.7E-18 3.3E-22 137.1 21.3 226 63-294 98-347 (382)
44 3u4t_A TPR repeat-containing p 99.8 1.6E-17 5.3E-22 130.2 21.4 230 62-296 3-251 (272)
45 2vq2_A PILW, putative fimbrial 99.8 1E-16 3.6E-21 121.6 24.6 204 65-272 11-222 (225)
46 1xnf_A Lipoprotein NLPI; TPR, 99.8 3.9E-18 1.3E-22 133.7 17.1 245 5-255 14-269 (275)
47 3sf4_A G-protein-signaling mod 99.8 1.2E-17 4.1E-22 138.3 20.3 268 26-294 8-335 (406)
48 3spa_A Mtrpol, DNA-directed RN 99.8 7.3E-20 2.5E-24 160.4 7.1 142 1-142 132-286 (1134)
49 4a1s_A PINS, partner of inscut 99.8 3.8E-18 1.3E-22 141.7 17.0 265 28-294 49-371 (411)
50 2q7f_A YRRB protein; TPR, prot 99.8 1.3E-17 4.4E-22 128.3 18.7 198 95-296 21-223 (243)
51 3spa_A Mtrpol, DNA-directed RN 99.8 8.6E-20 3E-24 159.9 6.3 149 62-214 127-286 (1134)
52 3ro2_A PINS homolog, G-protein 99.8 2E-17 6.8E-22 133.2 18.4 267 28-295 6-332 (338)
53 2ooe_A Cleavage stimulation fa 99.8 2.2E-15 7.6E-20 129.3 31.5 166 128-296 272-455 (530)
54 4g1t_A Interferon-induced prot 99.8 6.7E-16 2.3E-20 130.6 25.6 266 26-295 50-363 (472)
55 3vtx_A MAMA; tetratricopeptide 99.8 3E-16 1E-20 115.5 20.5 163 128-294 5-169 (184)
56 3sf4_A G-protein-signaling mod 99.7 3.6E-17 1.2E-21 135.4 16.0 281 4-284 17-365 (406)
57 4abn_A Tetratricopeptide repea 99.7 5.7E-17 1.9E-21 137.0 17.0 210 77-292 83-318 (474)
58 1xi4_A Clathrin heavy chain; a 99.7 2.8E-15 9.7E-20 135.8 27.5 235 26-290 1104-1340(1630)
59 3ulq_A Response regulator aspa 99.7 2.6E-16 9.1E-21 129.5 18.7 286 6-294 22-367 (383)
60 2ond_A Cleavage stimulation fa 99.7 8.3E-15 2.8E-19 116.9 26.7 234 27-266 8-275 (308)
61 4a1s_A PINS, partner of inscut 99.7 5.4E-17 1.9E-21 134.8 14.5 262 3-264 55-375 (411)
62 3e4b_A ALGK; tetratricopeptide 99.7 3.1E-15 1.1E-19 125.7 24.6 268 13-297 55-353 (452)
63 3vtx_A MAMA; tetratricopeptide 99.7 1E-15 3.5E-20 112.6 18.9 167 96-266 4-175 (184)
64 2ooe_A Cleavage stimulation fa 99.7 3.7E-14 1.3E-18 121.7 31.1 196 96-295 271-492 (530)
65 3nf1_A KLC 1, kinesin light ch 99.7 8.3E-17 2.9E-21 128.3 12.5 244 26-294 26-306 (311)
66 3ro2_A PINS homolog, G-protein 99.7 9.5E-16 3.3E-20 123.3 18.5 261 4-264 13-335 (338)
67 2ond_A Cleavage stimulation fa 99.7 4.2E-14 1.4E-18 112.9 25.8 213 79-296 33-271 (308)
68 3nf1_A KLC 1, kinesin light ch 99.7 2.1E-16 7.1E-21 126.0 12.3 234 2-264 33-310 (311)
69 4gyw_A UDP-N-acetylglucosamine 99.7 3.5E-15 1.2E-19 131.2 20.0 163 128-294 9-173 (723)
70 1xi4_A Clathrin heavy chain; a 99.7 6.7E-14 2.3E-18 127.0 28.1 258 2-288 1111-1377(1630)
71 4abn_A Tetratricopeptide repea 99.7 3.5E-15 1.2E-19 126.1 19.1 213 43-258 84-318 (474)
72 4i17_A Hypothetical protein; T 99.7 6.8E-14 2.3E-18 106.5 23.7 202 64-276 9-224 (228)
73 3q15_A PSP28, response regulat 99.7 4.9E-15 1.7E-19 121.8 18.3 287 7-294 23-364 (378)
74 3as5_A MAMA; tetratricopeptide 99.7 8E-15 2.7E-19 107.6 16.9 158 134-295 14-173 (186)
75 1hz4_A MALT regulatory protein 99.7 2.4E-13 8.2E-18 111.4 27.5 264 31-294 18-321 (373)
76 3e4b_A ALGK; tetratricopeptide 99.6 5.7E-15 2E-19 124.0 15.6 277 3-293 10-314 (452)
77 3ulq_A Response regulator aspa 99.6 2.2E-14 7.7E-19 118.0 18.6 229 33-261 109-368 (383)
78 4i17_A Hypothetical protein; T 99.6 4.8E-14 1.6E-18 107.4 18.3 191 95-296 5-210 (228)
79 3as5_A MAMA; tetratricopeptide 99.6 8.7E-14 3E-18 102.0 18.6 166 97-266 8-178 (186)
80 3q15_A PSP28, response regulat 99.6 3.7E-13 1.3E-17 110.5 21.4 230 31-261 105-365 (378)
81 3edt_B KLC 2, kinesin light ch 99.6 5.8E-14 2E-18 110.1 15.5 221 74-294 13-280 (283)
82 1hz4_A MALT regulatory protein 99.6 1.5E-12 5.1E-17 106.7 23.5 259 4-262 22-323 (373)
83 4gyw_A UDP-N-acetylglucosamine 99.6 2.4E-13 8.1E-18 119.7 19.4 163 26-191 8-173 (723)
84 1qqe_A Vesicular transport pro 99.6 1.9E-13 6.5E-18 108.1 17.0 100 165-264 119-231 (292)
85 1qqe_A Vesicular transport pro 99.6 5.8E-13 2E-17 105.4 18.8 213 42-270 32-278 (292)
86 3mv2_B Coatomer subunit epsilo 99.5 3.1E-12 1E-16 99.9 21.1 238 9-269 26-290 (310)
87 2yhc_A BAMD, UPF0169 lipoprote 99.5 2.9E-12 1E-16 97.3 20.5 186 96-299 3-217 (225)
88 3mv2_B Coatomer subunit epsilo 99.5 9.5E-12 3.3E-16 97.2 23.4 239 34-295 20-282 (310)
89 3qky_A Outer membrane assembly 99.5 7.7E-13 2.6E-17 102.9 17.2 187 97-286 15-252 (261)
90 3edt_B KLC 2, kinesin light ch 99.5 5.1E-13 1.8E-17 104.6 16.2 199 63-261 44-281 (283)
91 3qky_A Outer membrane assembly 99.5 1.8E-12 6.1E-17 100.8 18.4 170 126-295 13-224 (261)
92 4ga2_A E3 SUMO-protein ligase 99.5 1.2E-13 4.3E-18 97.8 9.3 143 134-281 3-149 (150)
93 2pzi_A Probable serine/threoni 99.5 6E-13 2E-17 117.4 14.5 169 108-281 402-583 (681)
94 2fo7_A Synthetic consensus TPR 99.4 8.4E-12 2.9E-16 86.1 15.7 125 167-294 5-131 (136)
95 2fo7_A Synthetic consensus TPR 99.4 1.5E-11 5E-16 84.9 16.1 131 130-264 3-135 (136)
96 3urz_A Uncharacterized protein 99.4 1.1E-11 3.9E-16 92.8 16.6 129 132-265 58-190 (208)
97 3qou_A Protein YBBN; thioredox 99.4 1.5E-11 5E-16 97.0 17.9 175 115-293 104-282 (287)
98 3rjv_A Putative SEL1 repeat pr 99.4 3.8E-11 1.3E-15 90.2 19.2 105 80-191 4-117 (212)
99 3dra_A Protein farnesyltransfe 99.4 1E-09 3.4E-14 86.5 26.5 230 39-275 45-302 (306)
100 2pzi_A Probable serine/threoni 99.4 2.8E-11 9.6E-16 106.8 19.3 169 73-247 402-583 (681)
101 2vsy_A XCC0866; transferase, g 99.4 2E-11 6.7E-16 105.7 17.0 160 110-273 2-169 (568)
102 2ifu_A Gamma-SNAP; membrane fu 99.4 2.3E-11 7.7E-16 96.9 15.5 133 130-264 78-226 (307)
103 2r5s_A Uncharacterized protein 99.4 1.6E-11 5.4E-16 89.4 13.4 75 219-293 93-171 (176)
104 2yhc_A BAMD, UPF0169 lipoprote 99.4 8.3E-11 2.8E-15 89.2 17.4 185 61-266 3-218 (225)
105 3dra_A Protein farnesyltransfe 99.4 9.1E-10 3.1E-14 86.7 23.5 214 76-294 47-286 (306)
106 2vsy_A XCC0866; transferase, g 99.4 3.1E-11 1.1E-15 104.5 16.5 149 75-228 2-156 (568)
107 3rjv_A Putative SEL1 repeat pr 99.3 3.2E-10 1.1E-14 85.1 19.6 171 116-296 5-198 (212)
108 3urz_A Uncharacterized protein 99.3 1E-10 3.4E-15 87.6 16.7 181 30-236 7-194 (208)
109 4ga2_A E3 SUMO-protein ligase 99.3 1.3E-11 4.3E-16 87.4 10.5 139 71-214 6-148 (150)
110 3qou_A Protein YBBN; thioredox 99.3 1.5E-10 5.3E-15 91.1 17.6 163 94-260 114-283 (287)
111 2r5s_A Uncharacterized protein 99.3 1.1E-10 3.9E-15 84.9 15.5 156 100-260 9-172 (176)
112 2ifu_A Gamma-SNAP; membrane fu 99.3 4.1E-11 1.4E-15 95.4 14.0 196 75-293 4-222 (307)
113 3u3w_A Transcriptional activat 99.3 2.7E-09 9.1E-14 84.3 23.2 160 133-293 80-264 (293)
114 4gco_A Protein STI-1; structur 99.3 1.4E-10 4.8E-15 79.3 13.5 114 159-275 8-124 (126)
115 3gyz_A Chaperone protein IPGC; 99.3 3.7E-11 1.3E-15 84.8 10.1 96 199-294 35-132 (151)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.3 8.7E-10 3E-14 82.6 18.3 129 99-228 8-149 (213)
117 2c2l_A CHIP, carboxy terminus 99.3 4.3E-11 1.5E-15 94.0 11.5 192 96-294 3-198 (281)
118 2qfc_A PLCR protein; TPR, HTH, 99.3 7.8E-10 2.7E-14 87.4 18.5 164 130-293 77-264 (293)
119 4e6h_A MRNA 3'-END-processing 99.3 4E-09 1.4E-13 92.1 24.1 233 28-266 303-575 (679)
120 1a17_A Serine/threonine protei 99.2 5.6E-10 1.9E-14 80.0 14.5 127 164-293 14-144 (166)
121 4gco_A Protein STI-1; structur 99.2 1.9E-10 6.4E-15 78.7 10.9 100 196-295 9-110 (126)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.2 7E-10 2.4E-14 83.1 14.9 130 129-265 7-154 (213)
123 3q7a_A Farnesyltransferase alp 99.2 6.9E-08 2.3E-12 77.0 25.8 238 30-273 57-344 (349)
124 1na0_A Designed protein CTPR3; 99.2 1.3E-09 4.4E-14 73.9 14.0 115 163-280 9-125 (125)
125 2vgx_A Chaperone SYCD; alterna 99.2 1.2E-10 4.1E-15 82.1 8.7 114 150-268 9-125 (148)
126 2lni_A Stress-induced-phosphop 99.2 1.1E-09 3.7E-14 75.3 13.5 118 161-281 14-133 (133)
127 2vyi_A SGTA protein; chaperone 99.2 1.1E-09 3.9E-14 74.8 13.6 118 162-282 11-130 (131)
128 4f3v_A ESX-1 secretion system 99.1 3.2E-10 1.1E-14 87.5 10.6 193 75-274 19-249 (282)
129 1p5q_A FKBP52, FK506-binding p 99.1 1.2E-09 4E-14 88.1 14.1 94 200-293 196-292 (336)
130 2e2e_A Formate-dependent nitri 99.1 4.8E-10 1.7E-14 81.5 10.8 126 138-267 20-150 (177)
131 3gw4_A Uncharacterized protein 99.1 8.2E-10 2.8E-14 82.0 12.0 148 7-154 3-173 (203)
132 2fbn_A 70 kDa peptidylprolyl i 99.1 1E-10 3.4E-15 86.9 6.8 96 201-296 89-187 (198)
133 2qfc_A PLCR protein; TPR, HTH, 99.1 9.1E-09 3.1E-13 81.2 18.2 165 63-227 76-264 (293)
134 2vgx_A Chaperone SYCD; alterna 99.1 3.1E-10 1E-14 80.0 8.7 96 199-294 20-117 (148)
135 3u3w_A Transcriptional activat 99.1 3E-09 1E-13 84.0 15.3 167 25-191 73-265 (293)
136 3gyz_A Chaperone protein IPGC; 99.1 2.1E-09 7.1E-14 75.8 12.8 101 163-266 36-138 (151)
137 2kck_A TPR repeat; tetratricop 99.1 1.5E-09 5.2E-14 72.0 11.5 101 197-297 3-108 (112)
138 2xcb_A PCRH, regulatory protei 99.1 1.1E-09 3.9E-14 76.5 10.6 103 164-269 19-123 (142)
139 4e6h_A MRNA 3'-END-processing 99.1 1.5E-08 5.2E-13 88.5 19.7 216 79-297 326-572 (679)
140 3upv_A Heat shock protein STI1 99.1 2E-09 6.8E-14 73.5 11.1 111 163-276 4-122 (126)
141 2uy1_A Cleavage stimulation fa 99.1 2.9E-07 9.9E-12 77.9 26.5 273 10-292 28-380 (493)
142 3dss_A Geranylgeranyl transfer 99.1 3E-07 1E-11 72.9 24.8 243 26-276 25-319 (331)
143 4f3v_A ESX-1 secretion system 99.1 4.5E-09 1.5E-13 81.1 13.9 182 109-296 18-238 (282)
144 3q7a_A Farnesyltransferase alp 99.1 6.8E-08 2.3E-12 77.0 20.8 216 74-294 66-330 (349)
145 2e2e_A Formate-dependent nitri 99.0 2.6E-09 9E-14 77.5 11.5 115 110-228 23-143 (177)
146 3upv_A Heat shock protein STI1 99.0 6.6E-09 2.3E-13 70.8 12.9 95 200-294 4-100 (126)
147 1elw_A TPR1-domain of HOP; HOP 99.0 1.2E-08 4.2E-13 68.2 13.9 110 163-275 4-115 (118)
148 1p5q_A FKBP52, FK506-binding p 99.0 1.4E-09 4.7E-14 87.7 10.3 137 8-147 125-283 (336)
149 1a17_A Serine/threonine protei 99.0 1.8E-08 6.3E-13 71.9 15.2 128 129-260 14-145 (166)
150 3gw4_A Uncharacterized protein 99.0 4.5E-09 1.5E-13 77.9 12.2 132 129-260 27-175 (203)
151 3dss_A Geranylgeranyl transfer 99.0 3E-07 1E-11 72.9 23.0 218 73-295 40-304 (331)
152 2xcb_A PCRH, regulatory protei 99.0 4.1E-09 1.4E-13 73.6 10.9 95 199-293 17-113 (142)
153 2c2l_A CHIP, carboxy terminus 99.0 4.4E-09 1.5E-13 82.5 12.1 192 26-228 3-198 (281)
154 3q49_B STIP1 homology and U bo 99.0 9.4E-09 3.2E-13 71.1 12.1 100 162-264 8-109 (137)
155 1na0_A Designed protein CTPR3; 99.0 2.6E-08 9E-13 67.2 14.0 93 98-191 10-105 (125)
156 3sz7_A HSC70 cochaperone (SGT) 99.0 6.5E-09 2.2E-13 74.5 11.3 110 161-273 9-120 (164)
157 2lni_A Stress-induced-phosphop 99.0 1E-08 3.5E-13 70.3 11.7 100 197-296 13-114 (133)
158 3sz7_A HSC70 cochaperone (SGT) 99.0 1.2E-08 4E-13 73.1 12.3 98 127-228 10-107 (164)
159 1hxi_A PEX5, peroxisome target 99.0 4.8E-09 1.6E-13 71.0 9.6 94 202-295 19-114 (121)
160 2vyi_A SGTA protein; chaperone 99.0 3.3E-08 1.1E-12 67.3 13.7 114 98-215 13-129 (131)
161 1elw_A TPR1-domain of HOP; HOP 98.9 2.3E-08 8E-13 66.8 11.9 97 199-295 3-101 (118)
162 2dba_A Smooth muscle cell asso 98.9 6.2E-08 2.1E-12 67.7 14.3 114 162-278 27-145 (148)
163 4gcn_A Protein STI-1; structur 98.9 7E-09 2.4E-13 70.9 8.8 105 163-271 8-121 (127)
164 2dba_A Smooth muscle cell asso 98.9 3.5E-08 1.2E-12 69.0 12.7 100 197-296 25-129 (148)
165 4gcn_A Protein STI-1; structur 98.9 2.8E-08 9.5E-13 67.9 11.6 103 130-233 10-117 (127)
166 3q49_B STIP1 homology and U bo 98.9 2.1E-08 7.3E-13 69.2 11.1 95 199-293 8-104 (137)
167 2fbn_A 70 kDa peptidylprolyl i 98.9 1.1E-08 3.6E-13 75.8 10.1 159 4-183 12-176 (198)
168 4b4t_Q 26S proteasome regulato 98.9 1.2E-07 4.2E-12 78.9 17.0 23 70-92 12-34 (434)
169 4b4t_Q 26S proteasome regulato 98.9 1.4E-07 4.8E-12 78.6 16.8 162 65-226 58-242 (434)
170 2xev_A YBGF; tetratricopeptide 98.9 1.2E-07 4.1E-12 64.6 13.6 105 168-272 7-116 (129)
171 2xev_A YBGF; tetratricopeptide 98.8 3.2E-08 1.1E-12 67.5 10.1 94 203-296 5-106 (129)
172 1elr_A TPR2A-domain of HOP; HO 98.8 4.7E-08 1.6E-12 66.6 10.9 110 164-277 5-123 (131)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 4E-08 1.4E-12 82.6 12.4 128 165-292 270-412 (457)
174 1hxi_A PEX5, peroxisome target 98.8 4.1E-08 1.4E-12 66.4 10.2 97 166-265 20-118 (121)
175 1wao_1 Serine/threonine protei 98.8 1.3E-08 4.3E-13 86.0 9.4 119 169-290 12-134 (477)
176 2hr2_A Hypothetical protein; a 98.8 4.1E-08 1.4E-12 68.7 10.3 61 234-294 59-130 (159)
177 3k9i_A BH0479 protein; putativ 98.8 1.1E-08 3.9E-13 68.7 7.4 95 175-269 2-98 (117)
178 3rkv_A Putative peptidylprolyl 98.8 4.8E-08 1.7E-12 69.7 10.4 81 199-279 62-145 (162)
179 1elr_A TPR2A-domain of HOP; HO 98.8 2.7E-08 9.2E-13 67.8 8.8 98 199-296 3-109 (131)
180 1ihg_A Cyclophilin 40; ppiase 98.8 6.8E-08 2.3E-12 78.7 12.3 91 198-288 271-363 (370)
181 2kck_A TPR repeat; tetratricop 98.8 5.3E-08 1.8E-12 64.4 9.8 94 130-227 8-104 (112)
182 1dce_A Protein (RAB geranylger 98.8 1.1E-06 3.9E-11 75.5 20.0 167 114-284 46-244 (567)
183 2if4_A ATFKBP42; FKBP-like, al 98.7 3.9E-08 1.3E-12 79.2 9.4 147 129-296 180-329 (338)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 3.9E-08 1.3E-12 82.6 9.5 154 8-183 246-405 (457)
185 1wao_1 Serine/threonine protei 98.7 4.1E-08 1.4E-12 82.9 9.3 118 103-224 12-134 (477)
186 3ro3_A PINS homolog, G-protein 98.7 1E-07 3.5E-12 67.5 10.0 137 28-191 10-157 (164)
187 3rkv_A Putative peptidylprolyl 98.7 1.2E-07 4.1E-12 67.6 10.1 64 232-295 63-126 (162)
188 3ro3_A PINS homolog, G-protein 98.7 6.9E-08 2.4E-12 68.4 8.8 130 165-294 11-157 (164)
189 3k9i_A BH0479 protein; putativ 98.7 4.1E-08 1.4E-12 65.9 6.7 84 212-295 2-90 (117)
190 3n71_A Histone lysine methyltr 98.7 9.8E-08 3.4E-12 80.3 9.7 125 172-296 318-465 (490)
191 2l6j_A TPR repeat-containing p 98.7 2.7E-08 9.2E-13 65.9 5.1 94 199-292 3-104 (111)
192 2if4_A ATFKBP42; FKBP-like, al 98.6 1.8E-07 6.2E-12 75.3 10.4 153 96-266 178-333 (338)
193 1ihg_A Cyclophilin 40; ppiase 98.6 1E-06 3.4E-11 71.8 12.7 135 98-251 224-360 (370)
194 2uy1_A Cleavage stimulation fa 98.5 8.9E-05 3.1E-09 62.8 24.4 203 44-260 196-412 (493)
195 1na3_A Designed protein CTPR2; 98.5 7.4E-07 2.5E-11 56.4 9.0 82 199-280 8-91 (91)
196 1dce_A Protein (RAB geranylger 98.5 6.3E-06 2.2E-10 70.9 16.2 151 141-295 42-221 (567)
197 2kat_A Uncharacterized protein 98.5 1.1E-06 3.6E-11 58.6 8.9 82 180-264 2-85 (115)
198 2hr2_A Hypothetical protein; a 98.5 2.2E-06 7.7E-11 59.9 10.6 27 130-156 59-85 (159)
199 1klx_A Cysteine rich protein B 98.4 6.3E-06 2.2E-10 56.9 12.5 111 142-262 9-127 (138)
200 3ma5_A Tetratricopeptide repea 98.4 1.3E-06 4.4E-11 56.7 8.4 66 198-263 5-72 (100)
201 1klx_A Cysteine rich protein B 98.4 9.8E-06 3.4E-10 55.9 12.3 112 177-297 9-128 (138)
202 3n71_A Histone lysine methyltr 98.4 2.8E-06 9.6E-11 71.5 11.1 124 137-260 318-463 (490)
203 1zu2_A Mitochondrial import re 98.4 1.1E-06 3.8E-11 61.3 7.0 112 176-297 15-149 (158)
204 1zu2_A Mitochondrial import re 98.3 6.5E-07 2.2E-11 62.5 5.3 85 211-295 13-120 (158)
205 2l6j_A TPR repeat-containing p 98.3 8.4E-07 2.9E-11 58.5 5.7 91 130-224 6-102 (111)
206 2kat_A Uncharacterized protein 98.3 4E-06 1.4E-10 55.7 8.4 79 146-228 3-81 (115)
207 3bee_A Putative YFRE protein; 98.2 1.6E-05 5.6E-10 50.4 8.8 68 230-297 4-74 (93)
208 1na3_A Designed protein CTPR2; 98.2 3.3E-05 1.1E-09 48.5 10.3 83 26-110 8-90 (91)
209 3ma5_A Tetratricopeptide repea 98.1 9.2E-06 3.1E-10 52.5 7.1 61 233-293 8-68 (100)
210 2kc7_A BFR218_protein; tetratr 98.1 7.4E-06 2.5E-10 52.7 6.1 80 206-293 6-88 (99)
211 3qww_A SET and MYND domain-con 98.0 1.7E-05 5.7E-10 65.7 8.5 95 175-269 310-424 (433)
212 3qwp_A SET and MYND domain-con 98.0 5.5E-05 1.9E-09 62.7 10.9 103 169-271 293-415 (429)
213 3ly7_A Transcriptional activat 97.9 0.0015 5.2E-08 52.3 17.4 146 126-274 192-351 (372)
214 2kc7_A BFR218_protein; tetratr 97.9 5.4E-05 1.9E-09 48.5 7.3 59 238-296 6-65 (99)
215 3qwp_A SET and MYND domain-con 97.9 7.6E-05 2.6E-09 61.9 9.3 88 206-293 293-398 (429)
216 3qww_A SET and MYND domain-con 97.8 2.6E-05 9.1E-10 64.5 6.1 83 212-294 310-410 (433)
217 3ly7_A Transcriptional activat 97.7 0.0022 7.4E-08 51.4 15.6 133 58-193 190-340 (372)
218 3mkq_A Coatomer beta'-subunit; 97.6 0.0032 1.1E-07 56.7 17.1 49 168-227 728-776 (814)
219 3mkq_A Coatomer beta'-subunit; 97.6 0.0096 3.3E-07 53.6 19.6 155 36-227 608-763 (814)
220 3bee_A Putative YFRE protein; 97.6 0.00056 1.9E-08 43.3 8.1 68 197-264 3-75 (93)
221 1pc2_A Mitochondria fission pr 97.5 0.00094 3.2E-08 46.1 9.4 89 179-270 14-109 (152)
222 2v5f_A Prolyl 4-hydroxylase su 97.5 0.00074 2.5E-08 43.7 8.5 74 199-272 4-86 (104)
223 3u64_A Protein TP_0956; tetrat 97.4 0.0011 3.7E-08 51.0 9.5 86 217-302 180-276 (301)
224 1pc2_A Mitochondria fission pr 97.4 0.00077 2.6E-08 46.5 7.3 80 216-295 14-100 (152)
225 3lvg_A Clathrin heavy chain 1; 97.2 6.1E-09 2.1E-13 84.7 -22.0 242 26-291 53-316 (624)
226 3mkq_B Coatomer subunit alpha; 97.2 0.029 1E-06 39.7 15.2 102 6-124 15-116 (177)
227 1qsa_A Protein (soluble lytic 97.2 0.095 3.3E-06 45.5 26.1 70 5-76 81-150 (618)
228 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0065 2.2E-07 39.2 9.4 68 26-93 4-77 (104)
229 3mkq_B Coatomer subunit alpha; 97.0 0.052 1.8E-06 38.4 16.4 101 108-227 16-116 (177)
230 1nzn_A CGI-135 protein, fissio 96.9 0.027 9.3E-07 37.4 10.9 90 178-270 16-112 (126)
231 4h7y_A Dual specificity protei 96.9 0.0098 3.4E-07 40.6 8.5 57 213-269 73-131 (161)
232 1wy6_A Hypothetical protein ST 96.8 0.058 2E-06 36.2 16.8 141 138-298 17-157 (172)
233 3u64_A Protein TP_0956; tetrat 96.5 0.017 5.7E-07 44.5 8.9 68 27-94 199-272 (301)
234 3lvg_A Clathrin heavy chain 1; 96.4 0.00022 7.6E-09 58.6 -1.9 229 4-252 62-324 (624)
235 4gns_B Protein CSD3, chitin bi 96.4 0.03 1E-06 49.5 11.0 123 167-293 252-398 (754)
236 4ady_A RPN2, 26S proteasome re 96.3 0.56 1.9E-05 42.6 18.1 250 6-260 384-657 (963)
237 1nzn_A CGI-135 protein, fissio 96.1 0.028 9.5E-07 37.3 7.0 82 214-295 15-103 (126)
238 4ady_A RPN2, 26S proteasome re 96.0 0.39 1.3E-05 43.6 16.0 254 36-293 383-656 (963)
239 4fhn_B Nucleoporin NUP120; pro 95.9 0.22 7.5E-06 46.9 14.5 49 4-53 820-868 (1139)
240 3ffl_A Anaphase-promoting comp 95.8 0.058 2E-06 37.6 7.9 31 199-229 121-151 (167)
241 2ff4_A Probable regulatory pro 95.8 0.036 1.2E-06 45.3 8.1 67 236-302 175-246 (388)
242 4h7y_A Dual specificity protei 95.8 0.2 6.8E-06 34.3 10.1 38 23-61 9-52 (161)
243 4gns_B Protein CSD3, chitin bi 95.6 0.11 3.7E-06 46.0 10.6 122 31-154 252-397 (754)
244 3ffl_A Anaphase-promoting comp 95.5 0.31 1E-05 34.0 10.5 61 30-90 23-91 (167)
245 1wy6_A Hypothetical protein ST 94.9 0.51 1.7E-05 31.7 13.9 139 37-193 17-155 (172)
246 4b4t_P 26S proteasome regulato 94.9 1.4 4.9E-05 36.6 16.9 50 75-124 29-83 (445)
247 3lpz_A GET4 (YOR164C homolog); 94.7 1.2 4.1E-05 35.2 17.7 170 6-190 22-214 (336)
248 1y8m_A FIS1; mitochondria, unk 94.7 0.6 2E-05 31.6 10.1 73 197-269 36-114 (144)
249 2wpv_A GET4, UPF0363 protein Y 94.4 1.4 4.9E-05 34.5 16.9 169 7-190 24-215 (312)
250 1v54_E Cytochrome C oxidase po 94.4 0.41 1.4E-05 30.1 7.7 64 143-209 25-88 (109)
251 3txn_A 26S proteasome regulato 94.3 1.8 6E-05 35.3 24.6 279 2-297 25-345 (394)
252 1zbp_A Hypothetical protein VP 94.2 0.81 2.8E-05 34.8 10.6 121 137-265 6-133 (273)
253 1y8m_A FIS1; mitochondria, unk 93.7 1 3.5E-05 30.5 10.2 66 161-228 37-105 (144)
254 3o48_A Mitochondria fission 1 93.6 0.42 1.4E-05 31.9 7.3 72 198-269 38-115 (134)
255 4fhn_B Nucleoporin NUP120; pro 93.6 5.1 0.00017 37.9 21.2 142 68-218 818-989 (1139)
256 3o48_A Mitochondria fission 1 93.6 0.45 1.5E-05 31.8 7.3 67 160-228 37-106 (134)
257 3txn_A 26S proteasome regulato 93.5 2.6 8.7E-05 34.3 17.1 166 62-227 19-208 (394)
258 2ff4_A Probable regulatory pro 93.5 0.49 1.7E-05 38.5 9.3 65 34-99 178-247 (388)
259 2y69_E Cytochrome C oxidase su 92.6 1 3.4E-05 30.1 7.7 64 143-209 68-131 (152)
260 2uwj_G Type III export protein 92.4 0.71 2.4E-05 28.9 6.5 51 36-92 48-98 (115)
261 4b4t_R RPN7, 26S proteasome re 92.4 1.3 4.4E-05 36.7 10.3 96 165-260 133-236 (429)
262 2wpv_A GET4, UPF0363 protein Y 92.3 3.3 0.00011 32.4 21.7 169 99-293 35-215 (312)
263 2p58_C Putative type III secre 91.1 0.8 2.7E-05 28.7 5.7 82 11-100 22-106 (116)
264 4b4t_P 26S proteasome regulato 90.8 6.2 0.00021 32.7 21.2 188 41-228 30-246 (445)
265 3lpz_A GET4 (YOR164C homolog); 90.7 5.2 0.00018 31.6 21.5 169 99-294 37-215 (336)
266 3ltm_A Alpha-REP4; protein eng 90.5 3.8 0.00013 29.7 18.6 42 199-241 156-197 (211)
267 1zbp_A Hypothetical protein VP 90.2 0.98 3.4E-05 34.3 6.8 58 208-265 5-64 (273)
268 4b4t_R RPN7, 26S proteasome re 90.1 3.5 0.00012 34.1 10.7 97 28-124 132-235 (429)
269 2uwj_G Type III export protein 90.0 2.4 8.1E-05 26.6 9.9 87 76-167 20-106 (115)
270 2p58_C Putative type III secre 89.7 2.6 8.8E-05 26.5 10.6 87 76-167 21-107 (116)
271 2y69_E Cytochrome C oxidase su 89.4 1.1 3.9E-05 29.9 5.7 57 80-136 71-130 (152)
272 3esl_A Checkpoint serine/threo 87.4 6.5 0.00022 28.4 10.0 47 214-260 93-143 (202)
273 1v54_E Cytochrome C oxidase po 83.6 6.4 0.00022 24.9 9.5 56 218-273 28-86 (109)
274 1oyz_A Hypothetical protein YI 80.6 16 0.00056 27.6 20.8 222 23-263 33-265 (280)
275 4b4t_S RPN3, 26S proteasome re 79.7 13 0.00045 31.4 9.1 124 27-152 231-365 (523)
276 2ion_A PDCD4, programmed cell 79.2 10 0.00035 26.0 7.1 22 32-53 14-35 (152)
277 4a1g_A Mitotic checkpoint seri 78.9 13 0.00045 25.5 9.1 49 251-299 84-134 (152)
278 2wvi_A Mitotic checkpoint seri 78.3 13 0.00045 25.8 7.5 27 234-260 98-124 (164)
279 2nsz_A Programmed cell death p 76.9 14 0.00046 24.5 8.5 22 3-24 14-35 (129)
280 2d2s_A Exocyst complex compone 75.8 22 0.00076 26.5 9.3 88 33-123 24-117 (235)
281 4gq2_M Nucleoporin NUP120; bet 75.2 41 0.0014 31.1 12.0 85 169-260 816-925 (950)
282 4aez_C MAD3, mitotic spindle c 72.1 17 0.00059 26.7 7.0 44 218-261 132-179 (223)
283 4gq2_M Nucleoporin NUP120; bet 71.8 48 0.0017 30.7 11.6 124 4-141 818-949 (950)
284 2ion_A PDCD4, programmed cell 70.2 15 0.0005 25.3 6.1 57 2-58 15-76 (152)
285 3ygs_P Procaspase 9; apoptosis 69.6 7.8 0.00027 24.2 4.3 32 42-77 52-83 (97)
286 1wdy_A 2-5A-dependent ribonucl 68.7 24 0.00082 26.4 7.9 17 287-303 267-283 (285)
287 3kae_A CDC27, possible protein 67.4 30 0.001 24.4 15.7 26 164-189 115-140 (242)
288 3bu8_A Telomeric repeat-bindin 67.3 16 0.00054 26.6 5.8 51 179-229 88-143 (235)
289 3esl_A Checkpoint serine/threo 65.3 36 0.0012 24.6 12.0 53 43-95 95-148 (202)
290 3ltm_A Alpha-REP4; protein eng 65.2 35 0.0012 24.4 20.2 154 95-260 31-184 (211)
291 3bqo_A Telomeric repeat-bindin 64.9 26 0.00089 25.2 6.4 22 241-262 126-147 (211)
292 2r9g_A AAA ATPase, central reg 64.2 38 0.0013 24.4 9.3 37 39-76 26-62 (204)
293 3ltj_A Alpharep-4; protein eng 64.1 35 0.0012 24.1 19.2 24 19-42 20-43 (201)
294 3eiq_C Programmed cell death p 63.7 55 0.0019 26.2 14.8 29 99-127 56-84 (358)
295 3bu8_A Telomeric repeat-bindin 63.3 30 0.001 25.3 6.6 49 144-192 88-143 (235)
296 2fe3_A Peroxide operon regulat 63.3 27 0.00091 23.6 6.3 23 170-192 28-50 (145)
297 4ets_A Ferric uptake regulatio 62.4 36 0.0012 23.5 7.1 69 44-113 14-85 (162)
298 1wgl_A TOLL-interacting protei 62.3 8.2 0.00028 21.5 2.9 47 254-302 12-59 (59)
299 1wdy_A 2-5A-dependent ribonucl 62.3 46 0.0016 24.8 11.2 16 6-21 12-27 (285)
300 2nsz_A Programmed cell death p 62.2 31 0.0011 22.8 8.8 65 99-163 9-78 (129)
301 2b7e_A PRE-mRNA processing pro 61.2 9.5 0.00032 21.2 3.0 30 43-72 2-31 (59)
302 3bge_A Predicted ATPase; struc 61.0 43 0.0015 24.1 8.6 44 33-76 10-56 (201)
303 4b4t_S RPN3, 26S proteasome re 61.0 32 0.0011 29.1 7.4 65 163-228 231-298 (523)
304 3ltj_A Alpharep-4; protein eng 60.4 42 0.0014 23.7 20.9 153 96-260 27-179 (201)
305 1oyz_A Hypothetical protein YI 60.4 52 0.0018 24.8 23.0 192 20-228 61-262 (280)
306 2qx5_A Nucleoporin NIC96; mRNA 59.9 91 0.0031 27.4 11.4 23 1-23 157-179 (661)
307 3hra_A Ankyrin repeat family p 58.5 26 0.00088 24.7 6.0 18 5-22 11-28 (201)
308 3eiq_C Programmed cell death p 58.3 70 0.0024 25.6 13.5 79 131-212 220-300 (358)
309 2d2s_A Exocyst complex compone 58.0 50 0.0017 24.5 7.4 90 133-227 23-118 (235)
310 3eyy_A Putative iron uptake re 58.0 40 0.0014 22.7 6.6 61 51-113 8-68 (145)
311 2fe3_A Peroxide operon regulat 57.7 24 0.00084 23.8 5.4 63 51-114 11-73 (145)
312 3t8k_A Uncharacterized protein 57.5 47 0.0016 23.3 7.7 58 5-62 12-70 (186)
313 2zu6_B Programmed cell death p 56.4 60 0.002 25.3 7.9 94 30-124 169-268 (307)
314 2qx5_A Nucleoporin NIC96; mRNA 55.8 1.1E+02 0.0037 27.0 13.7 82 34-127 301-386 (661)
315 3ctd_A Putative ATPase, AAA fa 55.8 56 0.0019 23.8 8.5 65 29-93 34-106 (213)
316 2xig_A Ferric uptake regulatio 55.7 38 0.0013 23.0 6.1 62 51-113 16-77 (150)
317 2p1h_A APAF-1, apoptotic prote 53.5 28 0.00095 21.3 4.7 33 40-76 49-81 (94)
318 4ets_A Ferric uptake regulatio 52.9 31 0.0011 23.8 5.3 63 15-77 20-84 (162)
319 1ya0_A SMG-7 transcript varian 52.9 53 0.0018 27.7 7.6 72 206-277 158-231 (497)
320 3mwm_A ZUR, putative metal upt 52.7 38 0.0013 22.7 5.6 48 66-113 17-64 (139)
321 3qil_A Clathrin heavy chain 1; 51.9 4 0.00014 26.6 0.5 69 6-82 16-84 (125)
322 1qsa_A Protein (soluble lytic 51.1 1.2E+02 0.0043 26.3 24.5 198 42-257 229-438 (618)
323 3ygs_P Procaspase 9; apoptosis 50.6 33 0.0011 21.3 4.7 37 112-148 52-88 (97)
324 3kea_A K1L; tropism, ANK repea 49.8 34 0.0012 26.0 5.7 233 7-261 7-247 (285)
325 2fu4_A Ferric uptake regulatio 49.6 38 0.0013 19.9 8.0 61 51-112 6-67 (83)
326 4a1g_A Mitotic checkpoint seri 49.1 61 0.0021 22.2 11.1 60 79-138 82-142 (152)
327 2o03_A Probable zinc uptake re 48.5 41 0.0014 22.1 5.2 45 68-112 16-60 (131)
328 3kea_A K1L; tropism, ANK repea 47.9 84 0.0029 23.7 7.7 168 40-226 9-184 (285)
329 2o03_A Probable zinc uptake re 47.1 29 0.00098 22.9 4.3 45 134-178 16-60 (131)
330 4b4t_O 26S proteasome regulato 46.8 74 0.0025 25.8 7.4 23 238-260 133-155 (393)
331 2ijq_A Hypothetical protein; s 45.9 72 0.0025 22.1 7.1 54 37-90 42-103 (161)
332 3eyy_A Putative iron uptake re 45.5 44 0.0015 22.5 5.1 31 146-176 35-65 (145)
333 2w57_A Ferric uptake regulatio 45.4 68 0.0023 21.7 8.1 62 51-113 6-68 (150)
334 1mzb_A Ferric uptake regulatio 45.3 64 0.0022 21.3 7.7 61 52-113 8-69 (136)
335 1ug3_A EIF4GI, eukaryotic prot 45.0 1.1E+02 0.0039 24.1 9.9 57 2-58 17-77 (339)
336 2ijq_A Hypothetical protein; s 43.4 79 0.0027 21.9 8.0 53 139-191 43-103 (161)
337 3mwm_A ZUR, putative metal upt 43.4 25 0.00086 23.5 3.5 43 135-177 20-62 (139)
338 2rg8_A Programmed cell death p 42.5 43 0.0015 23.3 4.7 25 30-54 13-37 (165)
339 2rfa_A Transient receptor pote 42.4 92 0.0032 22.3 7.8 48 3-51 7-58 (232)
340 2xig_A Ferric uptake regulatio 42.3 77 0.0026 21.4 8.2 26 32-57 31-56 (150)
341 2wvi_A Mitotic checkpoint seri 41.6 86 0.0029 21.8 11.7 46 81-126 79-125 (164)
342 1mzb_A Ferric uptake regulatio 41.4 75 0.0026 21.0 5.8 51 26-76 16-67 (136)
343 2f6m_A Suppressor protein STP2 38.1 56 0.0019 18.6 4.1 42 30-72 5-46 (65)
344 2w57_A Ferric uptake regulatio 37.9 55 0.0019 22.2 4.6 51 26-76 15-66 (150)
345 4aez_C MAD3, mitotic spindle c 37.6 1.2E+02 0.0041 22.3 10.3 51 45-95 132-183 (223)
346 3r88_A Anthranilate phosphorib 35.8 1.7E+02 0.0059 23.6 8.0 67 231-297 22-90 (377)
347 3f3f_C Nucleoporin NUP85; stru 35.1 1.3E+02 0.0044 25.8 7.1 65 81-146 500-567 (570)
348 3bqo_A Telomeric repeat-bindin 34.0 79 0.0027 22.8 4.8 22 170-191 124-145 (211)
349 4fke_A Aminopeptidase N; zinc 33.5 2.9E+02 0.0099 25.5 13.5 49 174-227 737-785 (909)
350 2qfz_A TBC1 domain family memb 31.2 1.1E+02 0.0036 24.2 5.9 108 43-154 188-312 (345)
351 3eu9_A Huntingtin-interacting 30.8 49 0.0017 23.8 3.8 17 209-225 183-199 (240)
352 2bn5_A PSI; nuclear protein, s 30.8 49 0.0017 15.7 3.0 22 206-227 8-29 (33)
353 3eu9_A Huntingtin-interacting 30.6 1.5E+02 0.005 21.1 7.5 56 238-294 180-235 (240)
354 2keb_A DNA polymerase subunit 30.3 1E+02 0.0035 19.2 6.6 56 45-102 27-87 (101)
355 2cwy_A Hypothetical protein TT 29.9 99 0.0034 19.0 5.5 51 139-191 12-67 (94)
356 2qq8_A TBC1 domain family memb 29.5 1.3E+02 0.0043 23.7 6.1 80 42-125 169-256 (334)
357 3re2_A Predicted protein; meni 27.0 1.7E+02 0.0058 23.6 6.0 71 68-154 244-322 (472)
358 3ljn_A Hypothetical protein; a 26.6 1.4E+02 0.0049 23.3 6.1 211 3-225 24-266 (364)
359 1ug3_A EIF4GI, eukaryotic prot 26.1 2.4E+02 0.0082 22.2 12.9 61 100-160 14-78 (339)
360 3hzj_A Rabgap1L, RAB GTPase-ac 25.9 2.3E+02 0.0078 21.9 7.4 106 42-152 130-251 (310)
361 2cfu_A SDSA1; SDS-hydrolase, l 25.9 2.1E+02 0.0071 25.2 7.2 47 238-284 455-501 (658)
362 2crb_A Nuclear receptor bindin 25.4 1.2E+02 0.0042 18.6 4.0 23 237-259 20-42 (97)
363 3uzd_A 14-3-3 protein gamma; s 25.2 2.2E+02 0.0074 21.4 10.0 57 33-89 10-67 (248)
364 1oai_A Nuclear RNA export fact 25.2 85 0.0029 17.3 3.1 22 40-61 33-55 (59)
365 1n11_A Ankyrin; clathrin, BAND 25.1 2.7E+02 0.0092 22.4 9.2 114 3-124 18-137 (437)
366 3crd_A Raidd; caspase recruitm 24.8 96 0.0033 19.2 3.7 30 40-73 48-77 (100)
367 3qye_A TBC1 domain family memb 24.5 2.5E+02 0.0086 21.9 11.5 110 41-154 163-288 (331)
368 3kae_A CDC27, possible protein 24.4 1.9E+02 0.0066 20.5 14.9 35 159-193 202-238 (242)
369 3t5v_B Nuclear mRNA export pro 24.2 1.4E+02 0.0046 24.9 5.4 25 203-227 179-203 (455)
370 1ixm_A SPO0B, protein (sporula 24.1 1.3E+02 0.0045 21.4 4.8 25 31-55 36-60 (192)
371 2r9g_A AAA ATPase, central reg 23.9 2.1E+02 0.0071 20.7 9.6 44 134-178 17-63 (204)
372 4b4t_O 26S proteasome regulato 23.4 2.9E+02 0.01 22.3 8.4 84 35-118 84-190 (393)
373 3t5v_B Nuclear mRNA export pro 23.3 3.2E+02 0.011 22.7 9.3 62 30-91 179-249 (455)
374 3f3f_C Nucleoporin NUP85; stru 23.2 3.6E+02 0.012 23.2 8.2 72 176-250 494-567 (570)
375 2p22_A Suppressor protein STP2 23.1 1.9E+02 0.0064 20.3 5.1 49 61-110 110-158 (174)
376 3u84_A Menin; MLL, JUND, ledgf 23.1 2.1E+02 0.007 23.6 5.9 71 68-154 266-344 (550)
377 2rpa_A Katanin P60 ATPase-cont 22.7 90 0.0031 18.5 3.0 24 237-260 17-40 (78)
378 1q2z_A ATP-dependent DNA helic 22.2 77 0.0026 20.6 2.9 50 247-299 42-96 (120)
379 3ax2_A Mitochondrial import re 21.8 1.3E+02 0.0044 17.5 5.2 27 238-264 23-49 (73)
380 1q02_A Sequestosome 1; helical 21.8 1E+02 0.0036 16.5 4.6 10 49-58 13-22 (52)
381 3ph0_C ASCG; type III secretio 21.7 1.1E+02 0.0038 16.8 3.8 7 244-250 52-58 (61)
382 2p1h_A APAF-1, apoptotic prote 21.2 1.5E+02 0.005 17.9 7.2 34 110-143 49-82 (94)
383 2yru_A Steroid receptor RNA ac 21.1 1.8E+02 0.0061 18.9 6.2 42 150-191 48-89 (118)
384 3lxu_X Tripeptidyl-peptidase 2 21.0 4.5E+02 0.015 25.6 8.6 79 31-111 1238-1331(1354)
385 2xdt_A Endoplasmic reticulum a 21.0 4.9E+02 0.017 23.9 20.0 90 167-260 684-778 (897)
386 2zu6_B Programmed cell death p 21.0 3E+02 0.01 21.4 13.9 25 2-26 9-33 (307)
387 2ve8_A FTSK, DNA translocase F 20.7 35 0.0012 19.9 0.9 31 270-301 27-57 (73)
388 2p22_A Suppressor protein STP2 20.2 1.8E+02 0.0062 20.4 4.6 51 25-76 109-159 (174)
389 3bge_A Predicted ATPase; struc 20.1 2.5E+02 0.0086 20.2 9.2 45 134-178 10-57 (201)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.5e-33 Score=240.59 Aligned_cols=289 Identities=10% Similarity=-0.031 Sum_probs=264.5
Q ss_pred chhhhhhcCChHHHHhhhhhccC--cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchh
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRT--RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (306)
++..|.+.|++++|.++|+.+.. ++..+|+.++..|.+.|++++|+++|+++.+.+. .+..++..++.++.+.|+++
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHH
T ss_pred HHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHH
Confidence 47789999999999999999876 7999999999999999999999999999998763 47889999999999999999
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046638 80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156 (306)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 156 (306)
+|..+++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+
T Consensus 357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999775 44789999999999999999999999999864 4677999999999999999999999999988
Q ss_pred cCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-------C
Q 046638 157 TEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-------N 229 (306)
Q Consensus 157 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~ 229 (306)
.++ .+..++..++.+|.+.|++++|.++|+++.+.. |.++.+|+.++..|.+.|++++|.++|+++.. .
T Consensus 436 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 436 LFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF---QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp TTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred hCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 754 377889999999999999999999999998754 45889999999999999999999999999854 3
Q ss_pred CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 230 PG--PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 230 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
|+ ..+|..++.+|.+.|++++|.+.++++++..|+++.++..++.+|.+.|++++|.++|+++.+.+
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 55 67899999999999999999999999999999999999999999999999999999999998743
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.8e-33 Score=233.98 Aligned_cols=185 Identities=14% Similarity=0.168 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc---------chhhHHHHHHHHHHcCCCccH
Q 046638 27 QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS---------GFKEGKQMHALIFKIGYDSNV 97 (306)
Q Consensus 27 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~ 97 (306)
...++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+ +++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 34688899999999999999999999999999999999999999998655 468899999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcCc----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 046638 98 FVQNRLVFMYAICGAINDANKVFSSMDE----RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173 (306)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 173 (306)
.+|++||.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999974 899999999999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc
Q 046638 174 CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213 (306)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (306)
++.|+.++|.+++++|.+.+. .|+..+|+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~--~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVR--QVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTS--SBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHHhcC
Confidence 999999999999999998765 36999999999998763
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-31 Score=233.82 Aligned_cols=286 Identities=12% Similarity=0.038 Sum_probs=254.2
Q ss_pred chhhhhhcCChHHHHhhhhhccCc-------------------chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRTR-------------------NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID- 61 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~- 61 (306)
++.+|.+.|++++|+++|+++.+. +..+|+.++.+|.+.|++++|+++|++|.+.+ |+
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~ 233 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKC 233 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chh
Confidence 578899999999999999965333 48899999999999999999999999999865 33
Q ss_pred hhhHHHH--------------------------------------HHHhccccchhhHHHHHHHHHHcCCCccHHHHHHH
Q 046638 62 YFTITSI--------------------------------------VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL 103 (306)
Q Consensus 62 ~~~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (306)
...+..+ +..|.+.|++++|.++|+++.+. +++..+++.+
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 311 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCK 311 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHH
Confidence 2333222 44566889999999999999876 5789999999
Q ss_pred HHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChH
Q 046638 104 VFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180 (306)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 180 (306)
+.+|.+.|++++|.++|+++.+ .+..+++.++.++.+.|++++|..+++++.+..+ .+..++..++..|.+.|+++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999974 4678999999999999999999999999986643 47888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRV 258 (306)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (306)
+|.++|+++.+.. |.+..+|+.++.+|.+.|++++|.++|+++... .+..+|..++.+|.+.|++++|.++|+++
T Consensus 391 ~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 391 EARRYFSKSSTMD---PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998754 457889999999999999999999999998753 57788999999999999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 259 LDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 259 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
++..|+++.++..++.+|.+.|++++|.++|+++.+.
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999875
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1e-31 Score=226.80 Aligned_cols=200 Identities=11% Similarity=0.107 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC---------h
Q 046638 44 EQALKCFSEMRQAGIDIDY-FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA---------I 113 (306)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 113 (306)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777765554 46888999999999999999999999999999999999999999988764 6
Q ss_pred HHHHHHHHhcCc----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046638 114 NDANKVFSSMDE----RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189 (306)
Q Consensus 114 ~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (306)
++|.++|++|.+ ||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 889999999974 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC---CCChhhHHHHHHHHHhc
Q 046638 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR---NPGPSVYKALLSACQVH 245 (306)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~ 245 (306)
.+.+. .|+..+|+.|+.+|++.|++++|.++|++|.. .|+..||+.++..+...
T Consensus 167 ~~~G~--~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEV--VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCC--CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 98764 35999999999999999999999999999986 49999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.2e-28 Score=200.46 Aligned_cols=283 Identities=16% Similarity=0.116 Sum_probs=166.8
Q ss_pred hhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHhccccchhh
Q 046638 5 TYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID-YFTITSIVGAIGVISGFKE 80 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 80 (306)
.|.+.|++++|++.|+++. +.+...|..+..++...|++++|++.|+++.+.+ |+ ...+..+...+...|++++
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHH
Confidence 3444444444444444431 1223344444444444444444444444444432 22 2223333344444455555
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046638 81 GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157 (306)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 157 (306)
|.+.|+++.+..+. +..+|..++.++.+.|++++|...|+++.+ | +...|..+...+...|++++|...|++....
T Consensus 154 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 154 AKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555544444321 344445555555555555555555554442 2 2334555555555555555555555555444
Q ss_pred CCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhH
Q 046638 158 EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVY 235 (306)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 235 (306)
.+. +..++..+..++...|++++|.+.|+++.+.. |.++.++..++..+.+.|++++|.+.|+++.. +.+..++
T Consensus 233 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 308 (388)
T 1w3b_A 233 SPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ---PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH
Confidence 322 45566677777777777777777777777643 34566777777778888888888888777765 2456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 236 KALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
..+...+...|++++|...++++++..|+++.++..++.++.+.|++++|.+.|+++.+
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777788888888888888888888787777888888888888888888888877765
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.6e-27 Score=195.73 Aligned_cols=285 Identities=13% Similarity=0.090 Sum_probs=197.1
Q ss_pred hhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhH
Q 046638 5 TYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (306)
.+.+.|++++|...++... +.+...|+.+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 120 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGA 120 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHH
Confidence 3444555555555554432 2345566666666666666666666666666542 12334566666666666677777
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046638 82 KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 158 (306)
.+.++++.+..+. +..++..+..++...|++++|.+.|+++.+ | +..+|..+...+...|++++|...|+++.+.+
T Consensus 121 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 199 (388)
T 1w3b_A 121 VQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199 (388)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7766666665432 445556666666667777777777766653 3 34567777777777777777777777776654
Q ss_pred CCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-C-ChhhHH
Q 046638 159 IKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-P-GPSVYK 236 (306)
Q Consensus 159 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~ 236 (306)
+. +...+..+...+...|++++|...+++..... |.+..++..++..|...|++++|.+.|+++... | ++.+|.
T Consensus 200 p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 275 (388)
T 1w3b_A 200 PN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS---PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275 (388)
T ss_dssp TT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 33 45566677777777777777777777766543 446777888888888888888888888887652 3 456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 237 ALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
.+...+...|++++|...|+++++..|+++.++..++.++.+.|++++|.+.++++.+.
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888887653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=2e-26 Score=193.98 Aligned_cols=288 Identities=13% Similarity=0.037 Sum_probs=250.0
Q ss_pred chhhhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 046638 2 QILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (306)
+...|.+.|++++|+..|+.+. +.+...|..+..++...|++++|+..|+++.+.+ +.+..++..+..++.+.|++
T Consensus 32 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 32 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKL 110 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 4567899999999999999864 3578899999999999999999999999999875 34577888999999999999
Q ss_pred hhHHHHHHHHHHcCCCccH---HHHHHH------------HHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHh
Q 046638 79 KEGKQMHALIFKIGYDSNV---FVQNRL------------VFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAH 140 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 140 (306)
++|...|+++.+..+. +. ..+..+ ...+...|++++|+..|+++.+ .+...+..++.+|.+
T Consensus 111 ~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 111 DEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999987643 44 555555 4558999999999999999874 467789999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHH------------HH
Q 046638 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAI------------VG 208 (306)
Q Consensus 141 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l------------~~ 208 (306)
.|++++|...|+++.+..+ .+..++..++.++...|++++|...|+++.... |.+...+..+ +.
T Consensus 190 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 190 EGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---QDHKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp TTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987643 367889999999999999999999999998654 4466666555 88
Q ss_pred HHhccCChHHHHHHHHHhcC-CCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCCh
Q 046638 209 LLGRAGFLNEAESFINSMSR-NPG-----PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCW 282 (306)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 282 (306)
.+...|++++|...|+++.. .|+ ...+..+...+.+.|++++|...++++++..|+++.++..++.+|...|++
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY 345 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH
Confidence 99999999999999999876 354 346788889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhc
Q 046638 283 DDAGDIRTLMYNR 295 (306)
Q Consensus 283 ~~a~~~~~~m~~~ 295 (306)
++|...++++.+.
T Consensus 346 ~~A~~~~~~al~~ 358 (450)
T 2y4t_A 346 DEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998763
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=7.8e-24 Score=172.54 Aligned_cols=288 Identities=12% Similarity=0.029 Sum_probs=245.1
Q ss_pred hhhhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchh
Q 046638 3 ILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (306)
...+.+.|++++|+..|+.+. +.+...|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChH
Confidence 457889999999999999864 3467889999999999999999999999999864 235678888999999999999
Q ss_pred hHHHHHHHHHHcCCC--ccHHHHHHH------------HHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcC
Q 046638 80 EGKQMHALIFKIGYD--SNVFVQNRL------------VFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHG 142 (306)
Q Consensus 80 ~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 142 (306)
+|...++++.+..+. .+...+..+ +..+...|++++|.+.++++.+ .+...+..+..++...|
T Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC
Confidence 999999999987541 245555555 6889999999999999999874 46678899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHH------------HHHHHH
Q 046638 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT------------AIVGLL 210 (306)
Q Consensus 143 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~ 210 (306)
++++|...++++.+..+. +..++..+...+...|++++|...+++..+.. |.+...+. .++..+
T Consensus 169 ~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD---QDHKRCFAHYKQVKKLNKLIESAEEL 244 (359)
T ss_dssp CHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887543 67788999999999999999999999998755 33444443 336779
Q ss_pred hccCChHHHHHHHHHhcC-CCChh-----hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhh
Q 046638 211 GRAGFLNEAESFINSMSR-NPGPS-----VYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDD 284 (306)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~-~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 284 (306)
.+.|++++|...++++.. .|+.. .+..+...+...|++++|...++++++..|+++.++..++.++...|++++
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 324 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999876 34432 345577889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 046638 285 AGDIRTLMYNR 295 (306)
Q Consensus 285 a~~~~~~m~~~ 295 (306)
|...|++..+.
T Consensus 325 A~~~~~~a~~~ 335 (359)
T 3ieg_A 325 AIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999998864
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=9.9e-24 Score=177.52 Aligned_cols=265 Identities=10% Similarity=0.024 Sum_probs=229.9
Q ss_pred cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHH
Q 046638 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLV 104 (306)
Q Consensus 25 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (306)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.++. +..++..++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 467789999999999999999999999998864 356788999999999999999999999999998754 688999999
Q ss_pred HHHHhcCChHHHHHHHHhcCc--CC-c---hhHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH
Q 046638 105 FMYAICGAINDANKVFSSMDE--RD-L---VSWNSL------------LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166 (306)
Q Consensus 105 ~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 166 (306)
.+|.+.|++++|.+.|+++.+ |+ . ..+..+ ...+...|++++|...|+++.+..+. +...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 999999999999999999975 32 2 455555 44589999999999999999887543 67888
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCC-hhhHHHH------
Q 046638 167 LVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPG-PSVYKAL------ 238 (306)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l------ 238 (306)
..++.++...|++++|.++|+++.+.. |.+..++..++.+|...|++++|...|+++.. .|+ ...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 999999999999999999999998754 45889999999999999999999999999875 344 3444444
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHhhcCCCchH----HHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 239 ------LSACQVHGNREIAVRSAKRVLDLWPNDPA----IYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 239 ------~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
+..+...|++++|...|+++++..|+++. .+..++.++.+.|++++|+..++++.+.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 78899999999999999999999998743 7889999999999999999999998764
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.1e-23 Score=168.21 Aligned_cols=263 Identities=11% Similarity=0.029 Sum_probs=177.1
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (306)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+..+. +..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 45556666666777777777777777776653 234455555666667777777777777777766532 5566667777
Q ss_pred HHHhcC-ChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHH
Q 046638 106 MYAICG-AINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181 (306)
Q Consensus 106 ~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 181 (306)
.+...| ++++|.+.|+++.+ .+...|..+...+...|++++|...++++.+..+. +...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 777777 77777777776653 24556777777777777777777777777665433 33445556677777777777
Q ss_pred HHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-----------CCChhhHHHHHHHHHhcCCHHH
Q 046638 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-----------NPGPSVYKALLSACQVHGNREI 250 (306)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ 250 (306)
|.+.++++.+.. |.+..++..++..+...|++++|...+++... ......+..+...+...|++++
T Consensus 178 A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 178 AERFFSQALSIA---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 777777776543 34666677777777777777777777766643 1223456667777777777777
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 251 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
|...++++++..|+++.++..++.++...|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777777766654
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.7e-24 Score=180.65 Aligned_cols=287 Identities=8% Similarity=-0.036 Sum_probs=247.1
Q ss_pred hhhhhhcCChHHHHhhhhhcc--CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhh
Q 046638 3 ILTYSRCDSSLDFQNVYSSVR--TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE 80 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (306)
...|.+.|++++|++.|+++. .|+...|..+..++...|++++|+..++++.+.+ +.+..++..+..++...|++++
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 356889999999999999974 4789999999999999999999999999999875 3456788999999999999999
Q ss_pred HHHHHHHHHHcCCCc-----------------------------------------------------------------
Q 046638 81 GKQMHALIFKIGYDS----------------------------------------------------------------- 95 (306)
Q Consensus 81 a~~~~~~~~~~~~~~----------------------------------------------------------------- 95 (306)
|...|+++.+.++..
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 999999998765311
Q ss_pred -------------cHHHHHHHHHHHHh---cCChHHHHHHHHhcCc----------------C-CchhHHHHHHHHHhcC
Q 046638 96 -------------NVFVQNRLVFMYAI---CGAINDANKVFSSMDE----------------R-DLVSWNSLLLGCAHHG 142 (306)
Q Consensus 96 -------------~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~~~~~~ 142 (306)
+...+..+...+.. .|++++|...|+++.+ | +..++..++..+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 13334444444444 8999999999998765 1 3457888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHH
Q 046638 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESF 222 (306)
Q Consensus 143 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (306)
++++|...|+++.+..+. ...+..+..++...|++++|...++++.... |.+..++..++..+...|++++|...
T Consensus 252 ~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD---SNNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999887654 7788899999999999999999999998754 45778899999999999999999999
Q ss_pred HHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 223 INSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 223 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
+++.... .+...+..+...+...|++++|...++++++..|+++.++..++.++...|++++|...++++.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 327 FDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9998753 456778889999999999999999999999999999999999999999999999999999988764
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=4.4e-23 Score=166.27 Aligned_cols=278 Identities=10% Similarity=-0.030 Sum_probs=237.8
Q ss_pred hhhhhhcCChHHHHhhhhhccC---cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc-ch
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS-GF 78 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 78 (306)
...+...|++++|.++|+++.. .+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...| ++
T Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 29 AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhH
Confidence 4567788999999999999743 456677778889999999999999999999864 346678888889999999 99
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046638 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 155 (306)
++|...++++.+..+. +...+..++.++...|++++|...|+++.+ .+...+..+...+...|++++|...++++.
T Consensus 108 ~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 186 (330)
T 3hym_B 108 EHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQAL 186 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999987643 677899999999999999999999999874 346778889999999999999999999998
Q ss_pred hcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC------CCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-
Q 046638 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS------LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR- 228 (306)
Q Consensus 156 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 228 (306)
+..+. +...+..+...+...|++++|...++++.+... ..|....++..++.+|...|++++|...+++...
T Consensus 187 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 187 SIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp TTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 87543 677889999999999999999999998876421 1133567899999999999999999999999875
Q ss_pred -CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH-hhcCChh
Q 046638 229 -NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS-KATDCWD 283 (306)
Q Consensus 229 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 283 (306)
+.+...+..+...+...|++++|...++++++..|+++..+..++.++ ...|+.+
T Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 245678889999999999999999999999999999999999999988 5666543
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=1.2e-23 Score=172.31 Aligned_cols=282 Identities=11% Similarity=-0.040 Sum_probs=229.0
Q ss_pred hhhhcCChHHHHh-hhhhccC---c----chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 046638 5 TYSRCDSSLDFQN-VYSSVRT---R----NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76 (306)
Q Consensus 5 ~~~~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (306)
.+...|++++|.+ .|++... . +...+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3455688899998 8775422 1 35568889999999999999999999999864 346678889999999999
Q ss_pred chhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CC-chhHHH---------------HHHHH
Q 046638 77 GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RD-LVSWNS---------------LLLGC 138 (306)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~---------------l~~~~ 138 (306)
++++|...++++.+..+ .+..++..++.+|...|++++|.+.|+++.+ |+ ...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999999874 3788999999999999999999999998874 22 222221 13334
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChH
Q 046638 139 AHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLN 217 (306)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (306)
...|++++|...|+++.+..+.. +..++..+...+...|++++|...++++.+.. |.+..++..++..+...|+++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---PNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHcCCHH
Confidence 48999999999999998865432 57788999999999999999999999988754 457889999999999999999
Q ss_pred HHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-----------hHHHHHHHHHHhhcCChhh
Q 046638 218 EAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND-----------PAIYVLLSNVSKATDCWDD 284 (306)
Q Consensus 218 ~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 284 (306)
+|...|+++.. +.+...+..+...+...|++++|...|+++++..|++ ..++..++.++...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999999875 2456788999999999999999999999999988776 7899999999999999999
Q ss_pred HHHHHHH
Q 046638 285 AGDIRTL 291 (306)
Q Consensus 285 a~~~~~~ 291 (306)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9998863
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.3e-23 Score=178.03 Aligned_cols=289 Identities=8% Similarity=-0.075 Sum_probs=184.4
Q ss_pred hhhhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------------------
Q 046638 3 ILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID------------------ 61 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------ 61 (306)
..+|.+.|++++|++.|+++. +.+...|..+..++...|++++|+..|+++.+.+...+
T Consensus 46 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (514)
T 2gw1_A 46 SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSK 125 (514)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHH
Confidence 456777788888888887753 34566777777788888888888877777765432000
Q ss_pred ------------------------------------------------------------hhhHHHHHHHhc---cccch
Q 046638 62 ------------------------------------------------------------YFTITSIVGAIG---VISGF 78 (306)
Q Consensus 62 ------------------------------------------------------------~~~~~~l~~~~~---~~~~~ 78 (306)
...+......+. +.|++
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
T 2gw1_A 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205 (514)
T ss_dssp HTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Confidence 111111111111 25566
Q ss_pred hhHHHHHHHHHH-----c--CC------CccHHHHHHHHHHHHhcCChHHHHHHHHhcC---------------------
Q 046638 79 KEGKQMHALIFK-----I--GY------DSNVFVQNRLVFMYAICGAINDANKVFSSMD--------------------- 124 (306)
Q Consensus 79 ~~a~~~~~~~~~-----~--~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------------- 124 (306)
++|...++++.+ . .+ +.+..++..++.++...|++++|...|+++.
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ 285 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRND 285 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCC
Confidence 666666666555 2 11 1123445555555555555555555555443
Q ss_pred ------------c---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046638 125 ------------E---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189 (306)
Q Consensus 125 ------------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (306)
+ .+...+..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|...++++
T Consensus 286 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp CTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 23445666666666677777777777776655433 3455666666777777777777777776
Q ss_pred HhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC-------hhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 046638 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG-------PSVYKALLSACQV---HGNREIAVRSAKRV 258 (306)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-------~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 258 (306)
.+.. |.+..++..++..+...|++++|...++++... |+ ...+..+...+.. .|++++|...++++
T Consensus 365 ~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 365 KRKF---PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHS---TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHc---ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 6543 335566777777777777777777777776542 11 2267777777777 78888888888888
Q ss_pred hhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 259 LDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 259 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
++..|+++.++..++.++.+.|++++|...|++..+.
T Consensus 442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 8888877778888888888888888888888777654
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.92 E-value=3e-23 Score=169.90 Aligned_cols=261 Identities=10% Similarity=-0.077 Sum_probs=219.5
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (306)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+..+ .+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45568889999999999999999999999875 34678899999999999999999999999999864 36889999999
Q ss_pred HHHhcCChHHHHHHHHhcCc--CC-----------chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHH
Q 046638 106 MYAICGAINDANKVFSSMDE--RD-----------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK-PDGTTFLVVLS 171 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~ 171 (306)
+|...|++++|+..|+++.+ |+ ...+..+...+...|++++|...|+++.+..+. ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999999875 21 123344588899999999999999999887543 25778899999
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CC-ChhhHHHHHHHHHhcCCHH
Q 046638 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NP-GPSVYKALLSACQVHGNRE 249 (306)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~ 249 (306)
.+...|++++|...|+++.+.. |.+..++..++.+|...|++++|...|+++.. .| +...+..+...|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR---PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999998755 45788999999999999999999999999876 34 4678999999999999999
Q ss_pred HHHHHHHHHhhcCCC------------chHHHHHHHHHHhhcCChhhHHHHHHH
Q 046638 250 IAVRSAKRVLDLWPN------------DPAIYVLLSNVSKATDCWDDAGDIRTL 291 (306)
Q Consensus 250 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 291 (306)
+|...|+++++..|+ +..++..++.++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999997765 357899999999999999998887754
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=3.5e-21 Score=156.84 Aligned_cols=264 Identities=10% Similarity=0.019 Sum_probs=225.3
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (306)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+..+. +...+..++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 46678889999999999999999999998864 345778888999999999999999999999998643 6788999999
Q ss_pred HHHhcCChHHHHHHHHhcCc--C----CchhHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHH
Q 046638 106 MYAICGAINDANKVFSSMDE--R----DLVSWNSL------------LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 167 (306)
++...|++++|...|+++.+ | +...+..+ ...+...|++++|...++++.+..+. +...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 99999999999999999875 4 23344444 57889999999999999999887543 677888
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCCh-hhHH---------
Q 046638 168 VVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPGP-SVYK--------- 236 (306)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~-~~~~--------- 236 (306)
.+..++...|++++|...++++.+.. |.+..++..++..+...|++++|...+++... .|+. ..+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHH
Confidence 99999999999999999999998754 56889999999999999999999999999876 2333 3332
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHhhcCCCchH----HHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 237 ---ALLSACQVHGNREIAVRSAKRVLDLWPNDPA----IYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 237 ---~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
.+...+...|++++|...++++++..|+++. .+..++.++...|++++|...+++..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2356688999999999999999999998764 3567899999999999999999998875
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=4.5e-22 Score=171.04 Aligned_cols=287 Identities=9% Similarity=0.040 Sum_probs=234.2
Q ss_pred hhhhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchh
Q 046638 3 ILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (306)
...|.+.|++++|++.|+++. +.++..|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++...|+++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHH
Confidence 457889999999999999864 3578899999999999999999999999999875 346678888999999999999
Q ss_pred hHHHHHHHHHHcCCCccH-------------------------------------H------------------------
Q 046638 80 EGKQMHALIFKIGYDSNV-------------------------------------F------------------------ 98 (306)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~-------------------------------------~------------------------ 98 (306)
+|...|+. ....+.+.. .
T Consensus 111 ~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (537)
T 3fp2_A 111 DAMFDLSV-LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189 (537)
T ss_dssp HHHHHHHH-HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS
T ss_pred HHHHHHHH-HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc
Confidence 99999863 322111110 0
Q ss_pred ------HHHHHHHHHH--------hcCChHHHHHHHHhcCc--CC--------chhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 99 ------VQNRLVFMYA--------ICGAINDANKVFSSMDE--RD--------LVSWNSLLLGCAHHGYSREAVQLFEQM 154 (306)
Q Consensus 99 ------~~~~l~~~~~--------~~g~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~m 154 (306)
....+...+. ..|++++|..+|+++.+ |+ ..++..+...+...|++++|...|+++
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1112222211 12478899999998875 33 235777788899999999999999999
Q ss_pred HhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CCh
Q 046638 155 QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGP 232 (306)
Q Consensus 155 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~ 232 (306)
.+.. |+...+..+...+...|++++|...++++.+.. |.+..++..++..+...|++++|...|+++.. . .+.
T Consensus 270 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 270 INLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred HhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence 8864 457788889999999999999999999998755 45788999999999999999999999999876 2 446
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 233 SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
..+..+...+...|++++|...++++++..|+++.++..++.++...|++++|...++++.+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 7888899999999999999999999999999999999999999999999999999999987654
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=2.3e-22 Score=161.86 Aligned_cols=262 Identities=10% Similarity=-0.097 Sum_probs=223.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (306)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++.+..+ .+..++..++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 45567788889999999999999999998864 34667888888999999999999999999999864 47888999999
Q ss_pred HHHhcCChHHHHHHHHhcCc--C-CchhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCccHHHHH
Q 046638 106 MYAICGAINDANKVFSSMDE--R-DLVSWNSL--------------LL-GCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 167 (306)
+|...|++++|.+.++++.+ | +...+..+ .. .+...|++++|...++++.+..+. +...+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHH
Confidence 99999999999999999874 2 22333333 22 377889999999999999887544 678889
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhc
Q 046638 168 VVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVH 245 (306)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~ 245 (306)
.+...+...|++++|.+.++++.+.. |.+..++..++..+...|++++|...++++.. . .+...+..+...+...
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR---PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988754 45788999999999999999999999999875 2 4567888999999999
Q ss_pred CCHHHHHHHHHHHhhcCCC------------chHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 246 GNREIAVRSAKRVLDLWPN------------DPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 246 ~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
|++++|...++++++..|+ ++.++..++.++...|++++|..++++..
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999888 78899999999999999999999986543
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.3e-21 Score=168.10 Aligned_cols=226 Identities=10% Similarity=-0.029 Sum_probs=186.3
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhc
Q 046638 65 ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHH 141 (306)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 141 (306)
+..+...+...|++++|...++++.+..+ +..++..+..++...|++++|.+.|+++.+ .+..++..+...+...
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Confidence 44445566677888888888888888753 477788888888888999999999888764 3567888899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHH
Q 046638 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES 221 (306)
Q Consensus 142 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (306)
|++++|...|+++.+..+. +...+..+..++...|++++|...++++.+.. |.+..++..++..+...|++++|..
T Consensus 324 ~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF---PTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999876543 45678888999999999999999999988764 4567789999999999999999999
Q ss_pred HHHHhcCC----CC----hhhHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChh
Q 046638 222 FINSMSRN----PG----PSVYKALLSACQVH----------GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWD 283 (306)
Q Consensus 222 ~~~~~~~~----~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 283 (306)
.|+++... +. ...+......+... |++++|...|+++++..|+++.++..++.++.+.|+++
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Confidence 99988652 11 12234445667777 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcC
Q 046638 284 DAGDIRTLMYNRG 296 (306)
Q Consensus 284 ~a~~~~~~m~~~~ 296 (306)
+|.+.|++..+..
T Consensus 480 ~A~~~~~~al~~~ 492 (537)
T 3fp2_A 480 EAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999887643
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=5.5e-21 Score=151.26 Aligned_cols=268 Identities=12% Similarity=-0.012 Sum_probs=216.1
Q ss_pred hhhhcCChHHHHhhhhhccCcc----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhh
Q 046638 5 TYSRCDSSLDFQNVYSSVRTRN----QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE 80 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (306)
-....|+++.|++.++.....+ ......+.++|...|+++.|+..++. . -.|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 3456799999999998865433 23456678999999999999987754 2 35677888888999999999999
Q ss_pred HHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046638 81 GKQMHALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159 (306)
Q Consensus 81 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 159 (306)
|.+.++++...+..| +...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|...|+++.+..
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 999999999876434 567788888999999999999999999 5677889999999999999999999999998875
Q ss_pred CccHHHH---HHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhh
Q 046638 160 KPDGTTF---LVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSV 234 (306)
Q Consensus 160 ~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~ 234 (306)
|+.... ...+..+...|++++|..+|+++.+.. |.++..++.++.++.+.|++++|...|++... . .++.+
T Consensus 161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 332211 223344556699999999999999864 56899999999999999999999999999876 3 46678
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHH
Q 046638 235 YKALLSACQVHGNREI-AVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGD 287 (306)
Q Consensus 235 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 287 (306)
+..++..+...|+.++ +.++++++++..|+++.+.. ...+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHH
Confidence 9999999999999876 67899999999999876543 3444444554443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=3.9e-22 Score=163.32 Aligned_cols=258 Identities=10% Similarity=-0.058 Sum_probs=206.2
Q ss_pred HHHhcCChHHHHH-HHHHHHHcCC---CCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 046638 36 GFCNLGSGEQALK-CFSEMRQAGI---DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG 111 (306)
Q Consensus 36 ~~~~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 111 (306)
++...|++++|+. .+++...... ..+...+..+...+.+.|++++|...++++.+..+ .+..++..++.+|...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCc
Confidence 3445688999998 8876654321 11356788889999999999999999999999864 47889999999999999
Q ss_pred ChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHH--------------HHHHHH
Q 046638 112 AINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV--------------VLSACC 174 (306)
Q Consensus 112 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--------------l~~~~~ 174 (306)
++++|.+.|+++.+ .+..++..++.++...|++++|...++++....+......... .+..+.
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999998874 4677899999999999999999999999988654322221111 233344
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHH
Q 046638 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAV 252 (306)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~ 252 (306)
..|++++|...++++.+.....+ +..++..++..|...|++++|...|+++.. . .+...+..+...+...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 89999999999999987653221 688899999999999999999999999875 2 45678999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 253 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
..++++++..|+++.++..++.+|.+.|++++|...|++..+.
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988764
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=2.2e-21 Score=158.87 Aligned_cols=233 Identities=11% Similarity=-0.039 Sum_probs=196.6
Q ss_pred ChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHH
Q 046638 61 DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLG 137 (306)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 137 (306)
+...+..+...+.+.|++++|...|+++++..+. +..++..++.+|...|++++|+..|+++.+ .+..+|..++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4556888899999999999999999999998754 788999999999999999999999999874 357789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc---------cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHH
Q 046638 138 CAHHGYSREAVQLFEQMQKTEIKP---------DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208 (306)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~~~~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (306)
|...|++++|...|+++.+..+.. ....+..+...+...|++++|.++++++.+...... ++.++..++.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI-DPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC-CHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc-CHHHHHHHHH
Confidence 999999999999999998753210 012233457889999999999999999988653211 6889999999
Q ss_pred HHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHH
Q 046638 209 LLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAG 286 (306)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 286 (306)
.|...|++++|.+.|+++.. +.+..+|..+...|...|++++|...|+++++..|+++.++..++.+|.+.|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999876 2457789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 046638 287 DIRTLMYNR 295 (306)
Q Consensus 287 ~~~~~m~~~ 295 (306)
..|++..+.
T Consensus 302 ~~~~~al~~ 310 (365)
T 4eqf_A 302 SNFLTALSL 310 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.89 E-value=2.2e-23 Score=169.25 Aligned_cols=252 Identities=11% Similarity=0.074 Sum_probs=118.7
Q ss_pred hhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHH
Q 046638 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85 (306)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (306)
.-+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++
T Consensus 13 l~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45678999999999999665 49999999999999999999999653 67789999999999999999999988
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHH
Q 046638 86 ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165 (306)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 165 (306)
+...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+ ..
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 888874 3457889999999999999999998885 478889999999999999999999999977 36
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 046638 166 FLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245 (306)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (306)
|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+...|+ ....++..|.+.
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad--~l~~lv~~Yek~ 220 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHH--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHh--hHHHHHHHHHHC
Confidence 8999999999999999999999881 778999999999999999999887777664343 355688899999
Q ss_pred CCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhc--CChhhHHHHH
Q 046638 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKAT--DCWDDAGDIR 289 (306)
Q Consensus 246 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 289 (306)
|++++|+.+++..+.++|.....|.-|+.+|.+- ++..+.++.|
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999998889999998888874 3444444444
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=5.4e-21 Score=151.29 Aligned_cols=247 Identities=10% Similarity=-0.015 Sum_probs=202.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 046638 34 IAGFCNLGSGEQALKCFSEMRQAGIDIDY--FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG 111 (306)
Q Consensus 34 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 111 (306)
++.....|+++.|+..++..... .|+. .....+..++...|+++.|...++. . -+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 45567899999999998876543 3443 3556678899999999999986654 2 3567888999999999999
Q ss_pred ChHHHHHHHHhcCc----C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHH
Q 046638 112 AINDANKVFSSMDE----R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186 (306)
Q Consensus 112 ~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (306)
+.++|++.++++.. | +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998752 4 455677788999999999999999987 356778889999999999999999999
Q ss_pred HHHHhcCCCCCCcHhH--HHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 046638 187 YLMRNDASLEPPRAEH--YTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLW 262 (306)
Q Consensus 187 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (306)
+++.+.. |.+... ...++..+...|++++|..+|+++.. +.++..++.+..++...|++++|...++++++..
T Consensus 154 ~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998764 323211 12233455566999999999999976 3567788999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhcCChhh-HHHHHHHHhhc
Q 046638 263 PNDPAIYVLLSNVSKATDCWDD-AGDIRTLMYNR 295 (306)
Q Consensus 263 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 295 (306)
|+++.++..++.++...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 57888888764
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=9.5e-21 Score=152.38 Aligned_cols=255 Identities=7% Similarity=-0.021 Sum_probs=213.3
Q ss_pred hhhhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchh
Q 046638 3 ILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (306)
...+.+.|++++|...|+++. +.+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHH
Confidence 356788999999999999874 3477889999999999999999999999998864 346778888999999999999
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHH--------------HH-HHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhc
Q 046638 80 EGKQMHALIFKIGYDSNVFVQNRL--------------VF-MYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHH 141 (306)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 141 (306)
+|.+.++++.+..+. +...+..+ .. .+...|++++|.+.++++.+ .+...+..++..+...
T Consensus 107 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 107 AALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence 999999999987543 23333333 33 47788999999999999874 3567899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHH
Q 046638 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES 221 (306)
Q Consensus 142 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (306)
|++++|...++++.+..+. +..++..+...+...|++++|...++++.+.. |.+..++..++..|...|++++|.+
T Consensus 186 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN---PGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999887543 67788999999999999999999999988754 4578899999999999999999999
Q ss_pred HHHHhcCC-CC-------------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 046638 222 FINSMSRN-PG-------------PSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263 (306)
Q Consensus 222 ~~~~~~~~-~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 263 (306)
.++++... |+ ...|..+...+...|++++|..++++.++..|
T Consensus 262 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 99988752 43 56788899999999999999999988776443
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.5e-20 Score=143.33 Aligned_cols=237 Identities=10% Similarity=-0.031 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCc--c----HHHH
Q 046638 27 QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS--N----VFVQ 100 (306)
Q Consensus 27 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 100 (306)
...|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++++.+..+.. + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788888888889999999888888876 677888888888888888888888888887654221 1 5677
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChH
Q 046638 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180 (306)
Q Consensus 101 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 180 (306)
..++.+|...|++++|...|++..+.+.. ...+...|++++|...++++....+. +...+..+...+...|+++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHH
Confidence 77788888888888888888777642111 23455667777777777777665322 4456667777777777777
Q ss_pred HHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRV 258 (306)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (306)
+|...++++.+.. |.+..++..++.+|...|++++|...+++... +.+...|..+...+...|++++|...++++
T Consensus 157 ~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 157 NAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777777776644 34666777777777777777777777777654 233556666777777777777777777777
Q ss_pred hhcC------CCchHHHHHHHH
Q 046638 259 LDLW------PNDPAIYVLLSN 274 (306)
Q Consensus 259 ~~~~------p~~~~~~~~l~~ 274 (306)
++.. |++...+..+..
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHHH
Confidence 7766 666555555443
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3e-19 Score=138.69 Aligned_cols=221 Identities=11% Similarity=0.001 Sum_probs=195.4
Q ss_pred hhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CC--------chhH
Q 046638 62 YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RD--------LVSW 131 (306)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--------~~~~ 131 (306)
...+..+...+...|++++|...++++.+.. .+..++..++.+|...|++++|.+.+++..+ |+ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3567778888999999999999999999987 6888999999999999999999999999874 22 5788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHh
Q 046638 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLG 211 (306)
Q Consensus 132 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (306)
..+...+...|++++|...|+++.... |+. ..+...|++++|...++.+.... |.+...+..++..+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHH
Confidence 999999999999999999999998864 332 35667788999999999988754 457788999999999
Q ss_pred ccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHH
Q 046638 212 RAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIR 289 (306)
Q Consensus 212 ~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 289 (306)
..|++++|...+++... +.+...+..+...+...|++++|...++++++..|+++.++..++.++...|++++|...+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999876 3456788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC
Q 046638 290 TLMYNRG 296 (306)
Q Consensus 290 ~~m~~~~ 296 (306)
++..+..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9887643
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.85 E-value=1.8e-19 Score=136.57 Aligned_cols=196 Identities=15% Similarity=0.079 Sum_probs=148.9
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 046638 94 DSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170 (306)
Q Consensus 94 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 170 (306)
+++...+..+...+.+.|++++|+..|++..+ .+...+..+..++.+.|++++|+..|++..+..+. +...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 34556677777777888888888888877654 24567777778888888888888888888776543 556677777
Q ss_pred HHHHcc-----------CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCChhhHHHH
Q 046638 171 SACCHA-----------GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPGPSVYKAL 238 (306)
Q Consensus 171 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l 238 (306)
.++... |++++|...+++..+.. |.+...+..+..++...|++++|+..|++... ..++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 788888 99999999999988755 45788899999999999999999999998764 2567788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 239 LSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
...+...|++++|+..|+++++..|+++..+..++.++...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998764
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=4.6e-21 Score=155.74 Aligned_cols=259 Identities=10% Similarity=0.060 Sum_probs=140.2
Q ss_pred chhhhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhH
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (306)
|+.++.+.|++++|++.|.+ .+|...|..++.++...|++++|+.+++..++. .+++.+...++.+|.+.|+++++
T Consensus 38 La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~ 113 (449)
T 1b89_A 38 LAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAEL 113 (449)
T ss_dssp ---------------------------------------------------------------------------CHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHH
Confidence 67889999999999999976 467779999999999999999999988777764 46678889999999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 046638 82 KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 161 (306)
.++++ .|+..+|+.++..|...|++++|..+|..+ ..|..++.++.+.|++++|.+.++++ .
T Consensus 114 e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~ 175 (449)
T 1b89_A 114 EEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------N 175 (449)
T ss_dssp TTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------T
T ss_pred HHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------C
Confidence 98885 367789999999999999999999999988 48999999999999999999999998 2
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHH
Q 046638 162 DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALL 239 (306)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~ 239 (306)
+..+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|..+++....- .....|+.+.
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~ 248 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLHIV-------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 248 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHHHH-------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 67899999999999999999966554322 14444667999999999999999999998763 4556777777
Q ss_pred HHHHh--cCCHHHHHHHHHHHhhcCC-----CchHHHHHHHHHHhhcCChhhHHHHH
Q 046638 240 SACQV--HGNREIAVRSAKRVLDLWP-----NDPAIYVLLSNVSKATDCWDDAGDIR 289 (306)
Q Consensus 240 ~~~~~--~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~~ 289 (306)
.+|++ .+++.+.++.|..-+.+.| .+...|.-+...|.+.++++.|...+
T Consensus 249 il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 249 ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 77765 4566667777665555555 45678899999999999999988754
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.84 E-value=1.1e-18 Score=136.81 Aligned_cols=249 Identities=10% Similarity=-0.038 Sum_probs=192.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCc--cHHHHHHHH
Q 046638 27 QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS--NVFVQNRLV 104 (306)
Q Consensus 27 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 104 (306)
...+......+...|++++|+..|++..+... .+...+..+..++...|++++|...++++.+....+ ....|..++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34455677788899999999999999988642 345588888889999999999999999998843222 244588899
Q ss_pred HHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHH
Q 046638 105 FMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181 (306)
Q Consensus 105 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 181 (306)
.+|...|++++|++.|++..+ .+..+|..+...|...|++++|...|++..+..+. +...+..+...+...+++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998874 35678899999999999999999999998776433 55666666634444569999
Q ss_pred HHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCC---hHHHHHHHHHhcCC----CCh------hhHHHHHHHHHhcCCH
Q 046638 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF---LNEAESFINSMSRN----PGP------SVYKALLSACQVHGNR 248 (306)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~----~~~------~~~~~l~~~~~~~~~~ 248 (306)
|.+.|+++.+.. |.+...+..+..++...|+ +++|...+++.... |+. ..|..+...|...|++
T Consensus 161 A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 161 ADSSFVKVLELK---PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHS---TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhC---ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999988755 4467888888888888888 88888888877642 442 4677788889999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHhhcC
Q 046638 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD 280 (306)
Q Consensus 249 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 280 (306)
++|...++++++..|+++.....+.......+
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999888877776655443
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.1e-18 Score=144.93 Aligned_cols=299 Identities=8% Similarity=-0.040 Sum_probs=174.4
Q ss_pred hhhhhhcCChHHHHhhhhhcc------------CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCC-Chh
Q 046638 3 ILTYSRCDSSLDFQNVYSSVR------------TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG------IDI-DYF 63 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~ 63 (306)
..+|...|+.++|++.|++.. .....+|+.+...|...|++++|+..+++..+.. ..+ ...
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 346778899999999887642 1245678889999999999999999988875521 111 224
Q ss_pred hHHHHHHHhcc--ccchhhHHHHHHHHHHcCCCccHHHHHHHHHHH---HhcCChHHHHHHHHhcCc-------------
Q 046638 64 TITSIVGAIGV--ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMY---AICGAINDANKVFSSMDE------------- 125 (306)
Q Consensus 64 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~------------- 125 (306)
++.....++.. .+++++|+..|++.++..+. +...+..+..++ ...++.++|++.+++..+
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 45444444433 45688888888888776543 444444444332 233444444444443321
Q ss_pred ----------------------------CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHcc-
Q 046638 126 ----------------------------RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA- 176 (306)
Q Consensus 126 ----------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~- 176 (306)
.+..++..+...|...|++++|...+++..+..+. +..++..+..+|...
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKV 295 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHH
Confidence 23344556666666666666666666666655332 344444444443221
Q ss_pred ------------------CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCChhh---
Q 046638 177 ------------------GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPGPSV--- 234 (306)
Q Consensus 177 ------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~--- 234 (306)
+..+.|...++...+.. |.+..++..+...|...|++++|++.|++... .|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~ 372 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN---DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHHHHC---TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC---CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence 22445555555555433 33556677888899999999999999998865 344322
Q ss_pred -HHHHHHH-HHhcCCHHHHHHHHHHHhhc------------------------CCCchHHHHHHHHHHhhcCChhhHHHH
Q 046638 235 -YKALLSA-CQVHGNREIAVRSAKRVLDL------------------------WPNDPAIYVLLSNVSKATDCWDDAGDI 288 (306)
Q Consensus 235 -~~~l~~~-~~~~~~~~~a~~~~~~~~~~------------------------~p~~~~~~~~l~~~~~~~g~~~~a~~~ 288 (306)
+..+... ....|+.++|+..|++++++ +|+++.++..|+.+|...|++++|++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADED 452 (472)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2333322 35678999999988887754 566778899999999999999999999
Q ss_pred HHHHhhcCCCCCCCCcCC
Q 046638 289 RTLMYNRGIRKKPGYSWV 306 (306)
Q Consensus 289 ~~~m~~~~~~~~~~~~~~ 306 (306)
|++..+.+-......+|+
T Consensus 453 y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 453 SERGLESGSLIPSASSWN 470 (472)
T ss_dssp ------------------
T ss_pred HHHHHhcCCCCCcHhhcC
Confidence 999998777666667764
No 32
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.83 E-value=3e-18 Score=140.09 Aligned_cols=248 Identities=10% Similarity=0.083 Sum_probs=211.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccc-hhhHHHHHHHHHHcCCCccHHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG-FKEGKQMHALIFKIGYDSNVFVQNRLV 104 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (306)
+...|+.+...+...|++++|+..+++.++.. +-+...|..+..++...|+ +++|+..++++++..+. +..+|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 46678889999999999999999999999864 2356788888999999996 99999999999998765 788999999
Q ss_pred HHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHc-cCChH
Q 046638 105 FMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH-AGFID 180 (306)
Q Consensus 105 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~ 180 (306)
.++...|++++|+..|+++.+ .+..+|..+..++.+.|++++|+..|+++++..+. +...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999985 46678999999999999999999999999988665 77888999999998 66657
Q ss_pred HH-----HHHHHHHHhcCCCCCCcHhHHHHHHHHHhccC--ChHHHHHHHHHhcCC-CChhhHHHHHHHHHhcC------
Q 046638 181 KG-----LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG--FLNEAESFINSMSRN-PGPSVYKALLSACQVHG------ 246 (306)
Q Consensus 181 ~a-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~------ 246 (306)
+| +..+++..+.. |.+...|..+..++...| ++++|.+.+.++... .+...+..++..|...|
T Consensus 253 eA~~~~el~~~~~Al~l~---P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV---PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 58888887654 558889999999999988 689999999998333 44567888888888874
Q ss_pred ---CHHHHHHHHHHH-hhcCCCchHHHHHHHHHHhhc
Q 046638 247 ---NREIAVRSAKRV-LDLWPNDPAIYVLLSNVSKAT 279 (306)
Q Consensus 247 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 279 (306)
..++|+.+|+++ .+.+|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 358999999999 899999888888888776553
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=1.6e-18 Score=135.96 Aligned_cols=241 Identities=9% Similarity=-0.118 Sum_probs=178.5
Q ss_pred hcCChHHHHHHHHHHHHcCCC---CChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHH
Q 046638 39 NLGSGEQALKCFSEMRQAGID---IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115 (306)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 115 (306)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++++.+..+. +..++..++.+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 456778888888887775321 13456667777778888888888888888877543 67788888888888888888
Q ss_pred HHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 046638 116 ANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192 (306)
Q Consensus 116 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (306)
|.+.|+++.+ .+..++..++.++...|++++|...|+++.+..+ +.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888888764 3567888888889999999999999998887643 3333334444556778999999999877765
Q ss_pred CCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 046638 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG-----PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 266 (306)
. |++...+ .++..+...++.++|...+++.... |. ...+..+...+...|++++|...|+++++..|++.
T Consensus 174 ~---~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 174 S---DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp S---CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred C---CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 4 2344444 4677777888889999999988764 21 46788888999999999999999999999999765
Q ss_pred HHHHHHHHHHhhcCChhhHHHHH
Q 046638 267 AIYVLLSNVSKATDCWDDAGDIR 289 (306)
Q Consensus 267 ~~~~~l~~~~~~~g~~~~a~~~~ 289 (306)
..+ ..++...|++++|++.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 443 56777888888888776
No 34
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=9.9e-17 Score=136.41 Aligned_cols=16 Identities=13% Similarity=0.110 Sum_probs=6.6
Q ss_pred cCChHHHHHHHHHHHH
Q 046638 40 LGSGEQALKCFSEMRQ 55 (306)
Q Consensus 40 ~~~~~~a~~~~~~~~~ 55 (306)
.+++++|+.+|++..+
T Consensus 128 ~~~~~~A~~~~~~a~~ 143 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAE 143 (490)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3344444444444433
No 35
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=2.1e-17 Score=129.67 Aligned_cols=227 Identities=13% Similarity=-0.034 Sum_probs=178.0
Q ss_pred cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcc----ccchhhHHHHHHHHHHcCCCccHHHH
Q 046638 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV----ISGFKEGKQMHALIFKIGYDSNVFVQ 100 (306)
Q Consensus 25 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (306)
.++.++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 35677888888888999999999999988873 345667777778888 889999999999888875 67778
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhcCc-CCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 046638 101 NRLVFMYAI----CGAINDANKVFSSMDE-RDLVSWNSLLLGCAH----HGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171 (306)
Q Consensus 101 ~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 171 (306)
..+..+|.. .+++++|+..|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 888888888 8888888888888765 356677888888888 888888888888887765 3455666777
Q ss_pred HHHc----cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhc----cCChHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 046638 172 ACCH----AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR----AGFLNEAESFINSMSRNPGPSVYKALLSACQ 243 (306)
Q Consensus 172 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 243 (306)
.+.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|...|++.....+...+..+...|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7776 788888888888877643 45667778888888 8888888888888776555667777777777
Q ss_pred h----cCCHHHHHHHHHHHhhcCCCc
Q 046638 244 V----HGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 244 ~----~~~~~~a~~~~~~~~~~~p~~ 265 (306)
. .+++++|...|+++.+..|++
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 7 788888888888888887754
No 36
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=2.5e-16 Score=133.98 Aligned_cols=270 Identities=11% Similarity=-0.046 Sum_probs=188.0
Q ss_pred cCChHHHHhhhhhcc-CcchHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcc----ccchh
Q 046638 9 CDSSLDFQNVYSSVR-TRNQISWNAIIAGFCN----LGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV----ISGFK 79 (306)
Q Consensus 9 ~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 79 (306)
.+++++|.+.|++.. ..++..+..|...|.. .+++++|+.+|++..+.| +...+..+...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 789999999998864 3577888889998988 899999999999998865 55667777777776 77899
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHhcCc-CCchhHHHHHHHHHh----cCCHHHHHHH
Q 046638 80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAI----CGAINDANKVFSSMDE-RDLVSWNSLLLGCAH----HGYSREAVQL 150 (306)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~ 150 (306)
+|..+|++..+.| +...+..|..+|.. .+++++|++.|++..+ .+...+..+...|.. .+++++|..+
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 9999999988875 56677788888887 7889999998887764 456677777777777 7888888888
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHc----cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhc----cCChHHHHHH
Q 046638 151 FEQMQKTEIKPDGTTFLVVLSACCH----AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR----AGFLNEAESF 222 (306)
Q Consensus 151 ~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 222 (306)
|++..+.| +...+..+...|.. .+++++|.++|++..+.+ ++..+..+...|.. .+++++|.+.
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-----NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 88877654 33455556666654 667777777777766532 34455566666655 6667777777
Q ss_pred HHHhcCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcC---ChhhHHHHHHHHhh
Q 046638 223 INSMSRNPGPSVYKALLSACQVH-----GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD---CWDDAGDIRTLMYN 294 (306)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~ 294 (306)
|++.....++..+..+...|... +++++|...|+++.+.. ++..+..++..|...| ++++|.++|++..+
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 76666554555555555555554 56666666666655543 2344555555555444 45555555555443
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=6e-17 Score=127.04 Aligned_cols=224 Identities=10% Similarity=-0.040 Sum_probs=197.7
Q ss_pred ChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHhcCc-CCchhHHHHH
Q 046638 61 DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI----CGAINDANKVFSSMDE-RDLVSWNSLL 135 (306)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~ 135 (306)
+..++..+...+...|++++|...|++..+.+ +..++..+..+|.. .+++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45677788888899999999999999999843 56788889999999 9999999999999875 4677888999
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHc----cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHH
Q 046638 136 LGCAH----HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH----AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207 (306)
Q Consensus 136 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (306)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...+..+.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg 153 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----DGDGCTILG 153 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----cHHHHHHHH
Confidence 99999 999999999999998875 56778888999998 999999999999998754 566788899
Q ss_pred HHHhc----cCChHHHHHHHHHhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh-
Q 046638 208 GLLGR----AGFLNEAESFINSMSRNPGPSVYKALLSACQV----HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA- 278 (306)
Q Consensus 208 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~- 278 (306)
..|.. .+++++|...|++.....++..+..+...|.. .+++++|...|+++.+..| +..+..++.+|..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 99988 99999999999998877677888889999999 9999999999999999876 6788999999999
Q ss_pred ---cCChhhHHHHHHHHhhcCC
Q 046638 279 ---TDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 279 ---~g~~~~a~~~~~~m~~~~~ 297 (306)
.+++++|.+.|++..+.|.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999998877653
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=4.2e-18 Score=128.98 Aligned_cols=196 Identities=13% Similarity=-0.016 Sum_probs=143.9
Q ss_pred cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHH
Q 046638 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLV 104 (306)
Q Consensus 25 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (306)
++...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...+++.++..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 466778888888999999999999999988754 245677788888888999999999999999888644 677888888
Q ss_pred HHHHhc-----------CChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 046638 105 FMYAIC-----------GAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170 (306)
Q Consensus 105 ~~~~~~-----------g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 170 (306)
.++... |++++|+..|++..+ | +...|..+..++...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 888888 888888888887764 3 45677778888888888888888888887766 4667777788
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 171 SACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
.++...|++++|...|++..+.. |.+..++..+...+...|++++|...|++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888877654 4577778888888888888888888777654
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=3.7e-17 Score=126.55 Aligned_cols=203 Identities=11% Similarity=0.010 Sum_probs=117.1
Q ss_pred hhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHH
Q 046638 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCA 139 (306)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 139 (306)
..+..+...+...|++++|...++++.+..+ .+..++..++.+|...|++++|.+.|+++.+ .+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 3344444555555555555555555555432 2445555555566666666666666655542 23445555666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHH
Q 046638 140 HHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218 (306)
Q Consensus 140 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (306)
..|++++|...++++...+..| +...+..+..++...|++++|.+.++++.+.. |.+..++..++..+...|++++
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666665522223 34455556666666666666666666665543 2355566666666666666666
Q ss_pred HHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHH
Q 046638 219 AESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIY 269 (306)
Q Consensus 219 a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 269 (306)
|...++++... .+...+..+...+...|+.++|.+.++++++..|+++...
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 66666666542 3344455556666666666666666666666666655443
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=3.5e-18 Score=131.48 Aligned_cols=211 Identities=12% Similarity=0.104 Sum_probs=133.8
Q ss_pred hhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHH
Q 046638 62 YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGC 138 (306)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 138 (306)
...|..+...+...|++++|...++++.+..+ .+..++..++.++...|++++|+..|+++.+ .+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34455555555666666666666666665442 2455666666666666777777766666553 2455666677777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHH
Q 046638 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218 (306)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (306)
...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. |.+...+..++..+...|++++
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665432 45567777777778888888888887776644 3466777788888888888888
Q ss_pred HHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHh
Q 046638 219 AESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSK 277 (306)
Q Consensus 219 a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 277 (306)
|...++++... .+..++..+...+...|++++|...++++++..|+++..+..+.....
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 88888777652 345667778888888888888888888888888887777766554433
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=2.2e-17 Score=127.86 Aligned_cols=198 Identities=11% Similarity=-0.009 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 046638 97 VFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173 (306)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 173 (306)
...+..++..+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.... +...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 57788899999999999999999998874 35678899999999999999999999999887543 677888899999
Q ss_pred HccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHH
Q 046638 174 CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIA 251 (306)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a 251 (306)
...|++++|.++++++.. ....|.+...+..++..+...|++++|...+++... . .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999987 223345778899999999999999999999999876 2 4567788899999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 252 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
...++++++..|+++..+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998753
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=3.9e-17 Score=123.96 Aligned_cols=193 Identities=12% Similarity=0.025 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHc
Q 046638 99 VQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175 (306)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 175 (306)
++..++..+...|++++|.+.|+++.+ .+...+..+...+...|++++|...++++.+..+. +..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 344444444444444444444444332 12334444444444444444444444444433221 33344444444444
Q ss_pred c-CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHH
Q 046638 176 A-GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAV 252 (306)
Q Consensus 176 ~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~ 252 (306)
. |++++|...++++.+ ....|.+...+..++.++...|++++|...++++.. . .+...+..+...+...|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 4 455555554444443 111122334444444445555555555555444433 1 22334444444455555555555
Q ss_pred HHHHHHhhcCC-CchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 253 RSAKRVLDLWP-NDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 253 ~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
..++++++..| +++..+..++..+...|+.++|..+++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 55555555444 444444444444455555555555544443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.80 E-value=9.7e-18 Score=137.06 Aligned_cols=226 Identities=9% Similarity=0.084 Sum_probs=196.9
Q ss_pred hhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-hHHHHHHHHhcCc---CCchhHHHHHHHH
Q 046638 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA-INDANKVFSSMDE---RDLVSWNSLLLGC 138 (306)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~~~ 138 (306)
..|..+..++...|++++|+..++++++..+. +..+|+.+..++...|+ +++|+..|+++.+ .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 56777788888999999999999999998754 78899999999999997 9999999999885 4667999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhc-cCChH
Q 046638 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR-AGFLN 217 (306)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 217 (306)
...|++++|+..|+++++..+. +...|..+..++...|++++|+..++++.+.. |.+..+|+.+..++.. .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999988665 77889999999999999999999999999865 4588999999999999 66658
Q ss_pred HH-----HHHHHHhcC-CC-ChhhHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcC--------
Q 046638 218 EA-----ESFINSMSR-NP-GPSVYKALLSACQVHG--NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD-------- 280 (306)
Q Consensus 218 ~a-----~~~~~~~~~-~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 280 (306)
+| +..|++... .| +...|..+...+...| ++++|++.++++ +..|+++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 87 477887765 34 5567888888888887 689999999998 899999999999999999874
Q ss_pred -ChhhHHHHHHHH-hh
Q 046638 281 -CWDDAGDIRTLM-YN 294 (306)
Q Consensus 281 -~~~~a~~~~~~m-~~ 294 (306)
.+++|+++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999988 44
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.80 E-value=1.6e-17 Score=130.16 Aligned_cols=230 Identities=9% Similarity=-0.019 Sum_probs=190.2
Q ss_pred hhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CCch----hHHHHH
Q 046638 62 YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLV----SWNSLL 135 (306)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~ 135 (306)
...+......+...|++++|...++++++..+. +...+..++.+|...|++++|++.|++..+ ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 345566677888999999999999999988643 566888899999999999999999998875 2322 488999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCC
Q 046638 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215 (306)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (306)
..+...|++++|+..|++..+..+. +...+..+..++...|++++|...+++..+.. |.+..++..+...+...++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887544 55788999999999999999999999988653 5578888888834444559
Q ss_pred hHHHHHHHHHhcC-CC-ChhhHHHHHHHHHhcCC---HHHHHHHHHHHhhcC---CCc-----hHHHHHHHHHHhhcCCh
Q 046638 216 LNEAESFINSMSR-NP-GPSVYKALLSACQVHGN---REIAVRSAKRVLDLW---PND-----PAIYVLLSNVSKATDCW 282 (306)
Q Consensus 216 ~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~ 282 (306)
+++|.+.|+++.. .| +...+..+...+...|+ +++|...++++++.. |+. ..++..++..|...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999876 24 45677778888888888 888999999999854 432 25788899999999999
Q ss_pred hhHHHHHHHHhhcC
Q 046638 283 DDAGDIRTLMYNRG 296 (306)
Q Consensus 283 ~~a~~~~~~m~~~~ 296 (306)
++|.+.+++..+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988743
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=1e-16 Score=121.59 Aligned_cols=204 Identities=11% Similarity=0.038 Sum_probs=130.7
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhc
Q 046638 65 ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHH 141 (306)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 141 (306)
+..+...+...|++++|...++++.+..+ .+...+..++.+|...|++++|.+.++++.+ .+..++..++..+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 33344444444444444444444444332 1344455555555555555555555555442 2344566666677777
Q ss_pred -CCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHH
Q 046638 142 -GYSREAVQLFEQMQKTEIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219 (306)
Q Consensus 142 -~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (306)
|++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. |.+...+..++..+...|++++|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHcCCHHHH
Confidence 77777777777776622223 34566777777888888888888887777644 34677788888888888888888
Q ss_pred HHHHHHhcC--C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHH
Q 046638 220 ESFINSMSR--N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLL 272 (306)
Q Consensus 220 ~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 272 (306)
...++++.. + .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 888887765 2 3455566666677888888888888888888888876655443
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.80 E-value=3.9e-18 Score=133.73 Aligned_cols=245 Identities=7% Similarity=-0.106 Sum_probs=193.8
Q ss_pred hhhhcCChHHHHhhhhhccC-------cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccc
Q 046638 5 TYSRCDSSLDFQNVYSSVRT-------RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 77 (306)
.+...|++++|++.|+++.. .+...|..+...+...|++++|+..|+++.+.+ +.+..++..+...+...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 45667999999999998754 256788899999999999999999999999874 3467889999999999999
Q ss_pred hhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046638 78 FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155 (306)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 155 (306)
+++|...++++++..+. +..++..++.+|...|++++|...|+++.+ |+.......+..+...|++++|...+++..
T Consensus 93 ~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999998643 678899999999999999999999999874 555555555666677899999999998887
Q ss_pred hcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC-CCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CChh
Q 046638 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE-PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPS 233 (306)
Q Consensus 156 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 233 (306)
.... ++...+ .++..+...++.++|...+.......... |.+..++..++..|...|++++|...|++.... |+.
T Consensus 172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 248 (275)
T 1xnf_A 172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN- 248 (275)
T ss_dssp HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-
T ss_pred hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-
Confidence 6643 343444 46777888889999999998876533100 012578899999999999999999999999864 433
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 046638 234 VYKALLSACQVHGNREIAVRSA 255 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~ 255 (306)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 333455678889999888776
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.79 E-value=1.2e-17 Score=138.27 Aligned_cols=268 Identities=13% Similarity=0.053 Sum_probs=179.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhhHHHHHHHhccccchhhHHHHHHHHHHc----CCCc-c
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID----YFTITSIVGAIGVISGFKEGKQMHALIFKI----GYDS-N 96 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 96 (306)
....+......+...|++++|+..|++..+.+. .+ ...+..+...+...|++++|...++++.+. +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344556667777788888888888888777532 12 245666777777788888888888776543 2111 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcCc-----CC----chhHHHHHHHHHhcCC--------------------HHHH
Q 046638 97 VFVQNRLVFMYAICGAINDANKVFSSMDE-----RD----LVSWNSLLLGCAHHGY--------------------SREA 147 (306)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a 147 (306)
..++..+..+|...|++++|...+++..+ ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45667777788888888888888777653 22 3367777777888888 8888
Q ss_pred HHHHHHHHhc----CCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC---CcHhHHHHHHHHHhccCChHHH
Q 046638 148 VQLFEQMQKT----EIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP---PRAEHYTAIVGLLGRAGFLNEA 219 (306)
Q Consensus 148 ~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 219 (306)
...+++.... +..| ...++..+...+...|++++|...+++..+.....+ ....++..++..|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8777766432 1111 234566777778888888888888877654321111 1123677777888888888888
Q ss_pred HHHHHHhcCC----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------chHHHHHHHHHHhhcCChhhH
Q 046638 220 ESFINSMSRN----PG----PSVYKALLSACQVHGNREIAVRSAKRVLDLWPN------DPAIYVLLSNVSKATDCWDDA 285 (306)
Q Consensus 220 ~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a 285 (306)
...+++.... ++ ..++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888776541 12 345667777788888888888888888774322 245677788888888888888
Q ss_pred HHHHHHHhh
Q 046638 286 GDIRTLMYN 294 (306)
Q Consensus 286 ~~~~~~m~~ 294 (306)
...+++..+
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776543
No 48
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=7.3e-20 Score=160.37 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=104.4
Q ss_pred CchhhhhhcCChHHHHhhhhhcc-------CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 046638 1 LQILTYSRCDSSLDFQNVYSSVR-------TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73 (306)
Q Consensus 1 ali~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (306)
+||++|++.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+++
T Consensus 132 aLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glc 211 (1134)
T 3spa_A 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211 (1134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 47888888888888888886642 57888888888888888888888888888888888888888888888888
Q ss_pred cccch-hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-----CCchhHHHHHHHHHhcC
Q 046638 74 VISGF-KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-----RDLVSWNSLLLGCAHHG 142 (306)
Q Consensus 74 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 142 (306)
+.|+. +.|.++|++|.+.|+.||..+|+.++..+.+.+-++.+.++...+.- +.+.+...|...|.+.+
T Consensus 212 K~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred hCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 88874 67888888888888888888888888766654333333332222221 12344555666666554
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=3.8e-18 Score=141.74 Aligned_cols=265 Identities=12% Similarity=0.027 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHhccccchhhHHHHHHHHHHc----C-CCccH
Q 046638 28 ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY-----FTITSIVGAIGVISGFKEGKQMHALIFKI----G-YDSNV 97 (306)
Q Consensus 28 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 97 (306)
..+..+...+...|++++|+..|+++.+.+ |+. ..+..+...+...|++++|...++++++. + .+...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345567778999999999999999999864 432 46778888999999999999999998764 1 12345
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcCc-----C----CchhHHHHHHHHHhcCC-----------------HHHHHHHH
Q 046638 98 FVQNRLVFMYAICGAINDANKVFSSMDE-----R----DLVSWNSLLLGCAHHGY-----------------SREAVQLF 151 (306)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 151 (306)
.++..+..+|...|++++|...|++..+ . ...++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6788899999999999999999998764 1 23478889999999999 99999999
Q ss_pred HHHHhc----CCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC---CcHhHHHHHHHHHhccCChHHHHHHH
Q 046638 152 EQMQKT----EIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP---PRAEHYTAIVGLLGRAGFLNEAESFI 223 (306)
Q Consensus 152 ~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (306)
++..+. +..| ...++..+...+...|++++|...+++..+.....+ ....++..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887542 2222 234778888999999999999999988765331101 11237888999999999999999999
Q ss_pred HHhcCC----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------chHHHHHHHHHHhhcCChhhHHHHH
Q 046638 224 NSMSRN----PG----PSVYKALLSACQVHGNREIAVRSAKRVLDLWPN------DPAIYVLLSNVSKATDCWDDAGDIR 289 (306)
Q Consensus 224 ~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~ 289 (306)
++.... .+ ..++..+...+...|++++|...+++++...+. ...++..++.+|...|++++|..++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 987652 11 456778888999999999999999999985332 3458889999999999999999999
Q ss_pred HHHhh
Q 046638 290 TLMYN 294 (306)
Q Consensus 290 ~~m~~ 294 (306)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.79 E-value=1.3e-17 Score=128.33 Aligned_cols=198 Identities=8% Similarity=0.008 Sum_probs=158.6
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 046638 95 SNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171 (306)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 171 (306)
.....+..++..+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.... +...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 4556788888999999999999999999864 35678888999999999999999999999887543 6778888999
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHH
Q 046638 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNRE 249 (306)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 249 (306)
.+...|++++|.+.++++.+.. |.+..++..++..+...|++++|...++++... .+...+..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998765 457888999999999999999999999998752 45678888999999999999
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 250 IAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 250 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
+|...++++++..|+++.++..++.++...|++++|...+++..+..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999987643
No 51
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=8.6e-20 Score=159.93 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=118.5
Q ss_pred hhhHHHHHHHhccccchhhHHHHHHHHH---HcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcC----cCCchhHHHH
Q 046638 62 YFTITSIVGAIGVISGFKEGKQMHALIF---KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD----ERDLVSWNSL 134 (306)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l 134 (306)
..||+++|.+|++.|++++|.++|++|. +.|+.||..|||+||.+|++.|++++|.++|++|. .||+.|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3689999999999999999999998876 45789999999999999999999999999999997 4999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC---CCcHhHHHHHHHHH
Q 046638 135 LLGCAHHGY-SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE---PPRAEHYTAIVGLL 210 (306)
Q Consensus 135 ~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 210 (306)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+. ..++..+++....... +|.+.+...|.+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 999999998 478999999999999999999999888655443 3444444443322211 11234445667777
Q ss_pred hccC
Q 046638 211 GRAG 214 (306)
Q Consensus 211 ~~~~ 214 (306)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 7655
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.78 E-value=2e-17 Score=133.18 Aligned_cols=267 Identities=13% Similarity=0.060 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhhHHHHHHHhccccchhhHHHHHHHHHHc----CCC-ccHH
Q 046638 28 ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID----YFTITSIVGAIGVISGFKEGKQMHALIFKI----GYD-SNVF 98 (306)
Q Consensus 28 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 98 (306)
..+......+...|++++|+..|+++.+... .+ ...+..+...+...|++++|...+++..+. +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455567788899999999999999988642 22 356777888888999999999999887643 212 2356
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCc-----CC----chhHHHHHHHHHhcCC--------------------HHHHHH
Q 046638 99 VQNRLVFMYAICGAINDANKVFSSMDE-----RD----LVSWNSLLLGCAHHGY--------------------SREAVQ 149 (306)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 149 (306)
++..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788889999999999999999988763 22 3378888889999999 999999
Q ss_pred HHHHHHhc----CCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC---CCcHhHHHHHHHHHhccCChHHHHH
Q 046638 150 LFEQMQKT----EIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE---PPRAEHYTAIVGLLGRAGFLNEAES 221 (306)
Q Consensus 150 ~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (306)
.+++.... +..| ....+..+...+...|++++|...+++..+..... +....++..++..+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98886542 2122 23467788889999999999999998876432110 1123478889999999999999999
Q ss_pred HHHHhcCC----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------chHHHHHHHHHHhhcCChhhHHH
Q 046638 222 FINSMSRN----PG----PSVYKALLSACQVHGNREIAVRSAKRVLDLWPN------DPAIYVLLSNVSKATDCWDDAGD 287 (306)
Q Consensus 222 ~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~ 287 (306)
.+++.... ++ ..++..+...+...|++++|...++++++..|. ...++..++.++...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99987641 22 446777888899999999999999999885332 24578889999999999999999
Q ss_pred HHHHHhhc
Q 046638 288 IRTLMYNR 295 (306)
Q Consensus 288 ~~~~m~~~ 295 (306)
.+++..+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99988763
No 53
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=2.2e-15 Score=129.34 Aligned_cols=166 Identities=10% Similarity=0.051 Sum_probs=123.7
Q ss_pred chhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 046638 128 LVSWNSLLLGCAH-------HGYSR-------EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193 (306)
Q Consensus 128 ~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (306)
...|..++..+.+ .|+++ +|..+|++..+.-.+-+...+..++..+.+.|++++|..+|+++.+..
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~ 351 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 351 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence 3455555555554 57766 788888888752122246677788888888889999999988888643
Q ss_pred CCCCCcH-hHHHHHHHHHhccCChHHHHHHHHHhcCCCC--hhhHHHHHHH-HHhcCCHHHHHHHHHHHhhcCCCchHHH
Q 046638 194 SLEPPRA-EHYTAIVGLLGRAGFLNEAESFINSMSRNPG--PSVYKALLSA-CQVHGNREIAVRSAKRVLDLWPNDPAIY 269 (306)
Q Consensus 194 ~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 269 (306)
|.+. .+|..++..+.+.|++++|.++|++....|. ...|...+.. +...|+.++|..+|+++++..|+++..+
T Consensus 352 ---p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~ 428 (530)
T 2ooe_A 352 ---DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV 428 (530)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence 3233 4788888888888889999999988876422 2223222222 3358999999999999999999999999
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 270 VLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 270 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
..++..+.+.|+.++|..+|++....+
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999999999999999999999988753
No 54
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=6.7e-16 Score=130.57 Aligned_cols=266 Identities=11% Similarity=0.036 Sum_probs=181.0
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCC-ChhhHHHHHHHhccccchhhHHHHHHHHHHcC-----
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQA-----G--IDI-DYFTITSIVGAIGVISGFKEGKQMHALIFKIG----- 92 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 92 (306)
....||.|...+...|++++|++.|++.++. + ..| ...+|..+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999987652 1 123 34678899999999999999999999887531
Q ss_pred --CCccHHHHHHHHHHHHhc--CChHHHHHHHHhcCc--CC-chhHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCcc
Q 046638 93 --YDSNVFVQNRLVFMYAIC--GAINDANKVFSSMDE--RD-LVSWNSLLLG---CAHHGYSREAVQLFEQMQKTEIKPD 162 (306)
Q Consensus 93 --~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~--~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p~ 162 (306)
......++..+..++... +++++|++.|++..+ |+ ...+..+..+ +...++.++|++.+++..+..+. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 112356677776666655 469999999999874 43 3445444444 34567778888888887766443 4
Q ss_pred HHHHHHHHHHHHc----cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCC-hhhHH
Q 046638 163 GTTFLVVLSACCH----AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPG-PSVYK 236 (306)
Q Consensus 163 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~ 236 (306)
...+..+...+.. .|++++|.+++++..... |.+..++..++..|...|++++|...+++... .|+ ..++.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 4455555444433 456778888888777644 45777788888888888888888888887765 233 34444
Q ss_pred HHHHHHHh-------------------cCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 237 ALLSACQV-------------------HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 237 ~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
.+...|.. .+..+.|...++++.+..|.+..++..++..+...|++++|+..|++..+.
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 44444322 123456666667766677766666777777777777777777777666543
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.76 E-value=3e-16 Score=115.55 Aligned_cols=163 Identities=11% Similarity=0.048 Sum_probs=96.4
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHH
Q 046638 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207 (306)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (306)
...|..+...|.+.|++++|+..|++..+..+. +..++..+..++.+.|++++|...+....... |.+...+..+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHHHH
Confidence 345555566666666666666666665554433 44555556666666666666666666555433 23455555556
Q ss_pred HHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhH
Q 046638 208 GLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDA 285 (306)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 285 (306)
..+...++++.|...+.+... +.+...+..+...+...|++++|++.|+++++.+|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 666666666666666655543 133445555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhh
Q 046638 286 GDIRTLMYN 294 (306)
Q Consensus 286 ~~~~~~m~~ 294 (306)
++.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.75 E-value=3.6e-17 Score=135.38 Aligned_cols=281 Identities=12% Similarity=0.050 Sum_probs=217.2
Q ss_pred hhhhhcCChHHHHhhhhhccC--c-c----hHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChhhHHHHHHH
Q 046638 4 LTYSRCDSSLDFQNVYSSVRT--R-N----QISWNAIIAGFCNLGSGEQALKCFSEMRQA----GIDI-DYFTITSIVGA 71 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~ 71 (306)
..+.+.|++++|...|++... | + ...|..+...+...|++++|+..+++..+. +..| ...++..+...
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 467889999999999998632 2 3 357888999999999999999999987553 1112 24567778888
Q ss_pred hccccchhhHHHHHHHHHHcCCC-----ccHHHHHHHHHHHHhcCC--------------------hHHHHHHHHhcCc-
Q 046638 72 IGVISGFKEGKQMHALIFKIGYD-----SNVFVQNRLVFMYAICGA--------------------INDANKVFSSMDE- 125 (306)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~- 125 (306)
+...|++++|...+++..+.... ....++..+..+|...|+ +++|.+.+++..+
T Consensus 97 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 97 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764211 124578889999999999 9999999887653
Q ss_pred ----C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 046638 126 ----R----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE----IKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192 (306)
Q Consensus 126 ----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (306)
+ ...++..+...+...|++++|...+++..+.. ..+ ...++..+...+...|++++|...+++..+.
T Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 177 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 23478888999999999999999999886531 111 1237788899999999999999999887653
Q ss_pred CCCC---CCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 046638 193 ASLE---PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----PG----PSVYKALLSACQVHGNREIAVRSAKRVLDL 261 (306)
Q Consensus 193 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (306)
.... +....++..++..|...|++++|...+++.... ++ ..++..+...+...|++++|...++++++.
T Consensus 257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2111 112567888999999999999999999987651 22 446778888999999999999999999984
Q ss_pred C------CCchHHHHHHHHHHhhcCChhh
Q 046638 262 W------PNDPAIYVLLSNVSKATDCWDD 284 (306)
Q Consensus 262 ~------p~~~~~~~~l~~~~~~~g~~~~ 284 (306)
. +....++..++.++...|+...
T Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 337 SREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 2 2245678888999988887643
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.75 E-value=5.7e-17 Score=137.04 Aligned_cols=210 Identities=8% Similarity=-0.046 Sum_probs=182.8
Q ss_pred chhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh-HHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHH
Q 046638 77 GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI-NDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFE 152 (306)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 152 (306)
.++++...++...+.. +.+...+..+..+|...|++ ++|++.|++..+ | +...|..+..+|...|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566677777666544 34788899999999999999 999999998874 3 46789999999999999999999999
Q ss_pred HHHhcCCCccHHHHHHHHHHHHcc---------CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc--------CC
Q 046638 153 QMQKTEIKPDGTTFLVVLSACCHA---------GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA--------GF 215 (306)
Q Consensus 153 ~m~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 215 (306)
+..+.. |+...+..+..++... |++++|.+.+++..+.. |.+...|..+..+|... |+
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 998764 5568888999999999 99999999999998755 55788999999999998 99
Q ss_pred hHHHHHHHHHhcC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHH
Q 046638 216 LNEAESFINSMSR-NP----GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRT 290 (306)
Q Consensus 216 ~~~a~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 290 (306)
+++|...|++... .| +...|..+...|...|++++|...|+++++..|+++..+..++.++...|++++|.+.+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999876 45 677899999999999999999999999999999999999999999999999999987654
Q ss_pred HH
Q 046638 291 LM 292 (306)
Q Consensus 291 ~m 292 (306)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 58
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=2.8e-15 Score=135.78 Aligned_cols=235 Identities=11% Similarity=0.090 Sum_probs=179.1
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (306)
++.+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+++....+... +....+.++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHH
Confidence 4667778888888888888888888553 4667778888888888888888888888777652 3333335888
Q ss_pred HHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHH
Q 046638 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 185 (306)
+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..++.++.+.|+++.|.+.
T Consensus 1176 aYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence 888888887544432 3456667777888888888888888888874 3688888888888888888888
Q ss_pred HHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 046638 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
+++.. +..+|..+..+|...|++..|......+. .++..+..++..|...|.+++|+.+++..+.++|.+
T Consensus 1244 arKA~--------n~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1244 ARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred HHHhC--------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 87662 56778888888888888888888776644 345556688888999999999999999999999888
Q ss_pred hHHHHHHHHHHhhc--CChhhHHHHHH
Q 046638 266 PAIYVLLSNVSKAT--DCWDDAGDIRT 290 (306)
Q Consensus 266 ~~~~~~l~~~~~~~--g~~~~a~~~~~ 290 (306)
...|.-|+.+|.+- ++..++.++|.
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88887777777663 44445555553
No 59
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=2.6e-16 Score=129.54 Aligned_cols=286 Identities=9% Similarity=-0.030 Sum_probs=208.8
Q ss_pred hhhcCChHHHHhhhhhccC--------cchHHHHHHHHH--HHhcCChHHHH-----------HHHHHHHHcCCCCChhh
Q 046638 6 YSRCDSSLDFQNVYSSVRT--------RNQISWNAIIAG--FCNLGSGEQAL-----------KCFSEMRQAGIDIDYFT 64 (306)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 64 (306)
+.+.+++++|..+++.+.. ++...|..++.. ....++++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 5678999999999988632 234444444432 22234444444 6666665432 11122
Q ss_pred HH------HHHHHhccccchhhHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHhcCc-----CC-
Q 046638 65 IT------SIVGAIGVISGFKEGKQMHALIFKI----GYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDE-----RD- 127 (306)
Q Consensus 65 ~~------~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~- 127 (306)
+. .....+...|++++|...+++..+. +-++ ...++..+..+|...|++++|...+++..+ ++
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 22 2455677899999999999999864 2122 346888999999999999999999998763 22
Q ss_pred ----chhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhc---CCC
Q 046638 128 ----LVSWNSLLLGCAHHGYSREAVQLFEQMQKT----EIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRND---ASL 195 (306)
Q Consensus 128 ----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 195 (306)
..+++.+..+|...|++++|...|++..+. +-.+ ...++..+..+|...|++++|.+.+++..+. ...
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 347888999999999999999999988653 1111 1247888999999999999999999987762 111
Q ss_pred CCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC----CCh---hhHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCc
Q 046638 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----PGP---SVYKALLSACQVHGN---REIAVRSAKRVLDLWPND 265 (306)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~ 265 (306)
.|....++..++..|.+.|++++|...+++...- +++ ..+..+...+...|+ +++|+.++++. ...|..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~ 338 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL 338 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH
Confidence 1335778899999999999999999999987651 232 234567777888888 78888888876 333445
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 266 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
..++..++..|...|++++|..++++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56888999999999999999999998864
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=8.3e-15 Score=116.93 Aligned_cols=234 Identities=7% Similarity=-0.003 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHhc----CCh----HHHHHHHHHHHHcCCCCChhhHHHHHHHhc-------cccch-------hhHHHH
Q 046638 27 QISWNAIIAGFCNL----GSG----EQALKCFSEMRQAGIDIDYFTITSIVGAIG-------VISGF-------KEGKQM 84 (306)
Q Consensus 27 ~~~~~~li~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~ 84 (306)
...|...+..-.+. ++. ++|+.+|++.+... +-+...|..++..+. +.|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44566666554443 233 68888999988853 345667777776664 34775 899999
Q ss_pred HHHHHHc-CCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CC-ch-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046638 85 HALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RD-LV-SWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159 (306)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 159 (306)
|++.++. .+ .+...|..++..+.+.|++++|..+|+++.+ |+ .. .|..++..+.+.|++++|..+|++..+..+
T Consensus 87 ~~rAl~~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 87 YERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 9999983 43 3677899999999999999999999998875 43 33 789999999999999999999999987654
Q ss_pred CccHHHHHHHHHHH-HccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC----C--Ch
Q 046638 160 KPDGTTFLVVLSAC-CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----P--GP 232 (306)
Q Consensus 160 ~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~ 232 (306)
. +...|....... ...|+.++|.++|++..+.. |.++..|..++..+.+.|++++|..+|++.... | ..
T Consensus 166 ~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 166 T-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp C-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 2 344444333332 23799999999999988754 457888999999999999999999999998762 2 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 046638 233 SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 266 (306)
..|..++..+...|+.+.|..+++++++..|+++
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 5788888888899999999999999999888743
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.73 E-value=5.4e-17 Score=134.78 Aligned_cols=262 Identities=11% Similarity=-0.002 Sum_probs=205.2
Q ss_pred hhhhhhcCChHHHHhhhhhccC--c-ch----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChhhHHHHHH
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRT--R-NQ----ISWNAIIAGFCNLGSGEQALKCFSEMRQA----GI-DIDYFTITSIVG 70 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~ 70 (306)
...+...|++++|+..|++... | +. ..|..+...|...|++++|+..+++..+. +. .....++..+..
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 3467889999999999998642 2 33 47888999999999999999999988653 11 123456778888
Q ss_pred HhccccchhhHHHHHHHHHHcC-----CCccHHHHHHHHHHHHhcCC-----------------hHHHHHHHHhcCc---
Q 046638 71 AIGVISGFKEGKQMHALIFKIG-----YDSNVFVQNRLVFMYAICGA-----------------INDANKVFSSMDE--- 125 (306)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~~~--- 125 (306)
.+...|++++|...++++.+.. .+....++..+..+|...|+ +++|++.+++..+
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987641 12235678889999999999 9999999888653
Q ss_pred --C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---Cc--cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 046638 126 --R----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI---KP--DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194 (306)
Q Consensus 126 --~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (306)
. ...++..+...+...|++++|...+++..+... .+ ....+..+..++...|++++|...+++..+...
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 1 234788899999999999999999998865321 11 123678889999999999999999988765321
Q ss_pred CC---CCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 046638 195 LE---PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----PG----PSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263 (306)
Q Consensus 195 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 263 (306)
.. .....++..+...|...|++++|...+++.... ++ ..++..+...|...|++++|...++++++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11 112567888999999999999999999988652 22 34677888899999999999999999998766
Q ss_pred C
Q 046638 264 N 264 (306)
Q Consensus 264 ~ 264 (306)
.
T Consensus 375 ~ 375 (411)
T 4a1s_A 375 X 375 (411)
T ss_dssp H
T ss_pred h
Confidence 3
No 62
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.73 E-value=3.1e-15 Score=125.67 Aligned_cols=268 Identities=10% Similarity=0.007 Sum_probs=157.7
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch---hhHHHH
Q 046638 13 LDFQNVYSSVRTRNQISWNAIIAGFCNLG-----SGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF---KEGKQM 84 (306)
Q Consensus 13 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~ 84 (306)
++|.++|++....++..+..|...+...+ ++++|+.+|++..+.|. + ..+..+...|...+.. ..+.+.
T Consensus 55 ~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~ 131 (452)
T 3e4b_A 55 KQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQ 131 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 44444444443334444444444333333 44555555555554432 1 1333333333333222 222333
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcC----ChHHHHHHHHhcCcCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHhc
Q 046638 85 HALIFKIGYDSNVFVQNRLVFMYAICG----AINDANKVFSSMDERDLVSWNSLLLGCAHHG---YSREAVQLFEQMQKT 157 (306)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~ 157 (306)
+....+.| +......|...|...+ +.+.+..+++.....+...+..|...|...| +.++|+..|++..+.
T Consensus 132 ~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 132 ISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp HHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 33333322 1223444555555555 3444555566666666668888888888888 888888888888877
Q ss_pred CCCccHHHHHHHHHHHHcc----CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHH-H--hccCChHHHHHHHHHhcCCC
Q 046638 158 EIKPDGTTFLVVLSACCHA----GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL-L--GRAGFLNEAESFINSMSRNP 230 (306)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~ 230 (306)
|.. +...+..+...|... +++++|.++|++.. . .++..+..+... | ...+++++|.+.|++.....
T Consensus 209 g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~-----g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 209 GTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P-----GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp TCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-----GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred CCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 754 445445566666554 68888888888876 2 255667777776 4 45788888888888887666
Q ss_pred ChhhHHHHHHHHHhcC-----CHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh----cCChhhHHHHHHHHhhcCC
Q 046638 231 GPSVYKALLSACQVHG-----NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA----TDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 231 ~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 297 (306)
++..+..+...|. .| ++++|...|+++. |.++..+..|+..|.. ..++++|...|++..+.|.
T Consensus 282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 7777777777776 55 8888888888887 7777888888888776 3378888888887766553
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.72 E-value=1e-15 Score=112.63 Aligned_cols=167 Identities=11% Similarity=0.059 Sum_probs=133.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 046638 96 NVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172 (306)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 172 (306)
+..+|..++..|...|++++|++.|++..+ .+..++..+..+|.+.|++++|...+.+....... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 566788888888888888888888887764 35567888888888888888888888888776544 55667777788
Q ss_pred HHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHH
Q 046638 173 CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREI 250 (306)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~ 250 (306)
+...++++.|...+.+..... |.+..++..+...|.+.|++++|++.|++... . .+...|..+...|...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN---TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888888999888888877654 45778888888999999999999999988765 2 456678888888999999999
Q ss_pred HHHHHHHHhhcCCCch
Q 046638 251 AVRSAKRVLDLWPNDP 266 (306)
Q Consensus 251 a~~~~~~~~~~~p~~~ 266 (306)
|+..|+++++.+|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999888653
No 64
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=3.7e-14 Score=121.73 Aligned_cols=196 Identities=11% Similarity=0.041 Sum_probs=155.9
Q ss_pred cHHHHHHHHHHHHh-------cCChH-------HHHHHHHhcCc---C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046638 96 NVFVQNRLVFMYAI-------CGAIN-------DANKVFSSMDE---R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157 (306)
Q Consensus 96 ~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 157 (306)
+...|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 44555556666664 68877 89999998874 4 4678999999999999999999999999886
Q ss_pred CCCcc-HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHH-HhccCChHHHHHHHHHhcCC-C-Chh
Q 046638 158 EIKPD-GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL-LGRAGFLNEAESFINSMSRN-P-GPS 233 (306)
Q Consensus 158 ~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~-~-~~~ 233 (306)
.+. + ...|...+..+.+.|++++|.++|++..+.. |.+...+...+.. +...|++++|..+|++.... | ++.
T Consensus 351 ~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~---~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~ 426 (530)
T 2ooe_A 351 EDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE 426 (530)
T ss_dssp SSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHH
Confidence 432 2 3578888888899999999999999998753 3244444433333 34689999999999988763 4 567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchH----HHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA----IYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
.|..++..+...|+.++|..+|++++...|.++. .+...+......|+.+.+.++++++.+.
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998765544 7878888888999999999999888653
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=8.3e-17 Score=128.32 Aligned_cols=244 Identities=10% Similarity=0.038 Sum_probs=122.3
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCChhhHHHHHHHhccccchhhHHHHHHHHHHc------C
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQA-------GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKI------G 92 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 92 (306)
+..++..+...+...|++++|+.+++++.+. .......++..+...+...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566778888888888888888888887663 12223445666666777777777777777776653 1
Q ss_pred C-CccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHH
Q 046638 93 Y-DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVL 170 (306)
Q Consensus 93 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~ 170 (306)
. +....++..+..+|...|++++|...|+++.+. .++... +..| ....+..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------------~~~~~~-~~~~~~~~~~~~la 160 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI------------------------REKVLG-KDHPDVAKQLNNLA 160 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------------------HHHHHC-TTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH------------------------HHHhcC-CCChHHHHHHHHHH
Confidence 1 122345555566666666666666665554320 000000 1111 122334444
Q ss_pred HHHHccCChHHHHHHHHHHHhc-----CCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC----------CC----
Q 046638 171 SACCHAGFIDKGLQYFYLMRND-----ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----------PG---- 231 (306)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~---- 231 (306)
..+...|++++|.++++++.+. +...|....++..++..|...|++++|.+.++++... +.
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 4444444444444444443332 0001112334444455555555555555555444320 00
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 232 ---PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 232 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
...+..+...+...+.+.++...++......|....++..++.+|.+.|++++|.++|++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 011122222334455556666666666666676777777778888888888888877776654
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.71 E-value=9.5e-16 Score=123.30 Aligned_cols=261 Identities=13% Similarity=0.063 Sum_probs=200.7
Q ss_pred hhhhhcCChHHHHhhhhhccC--c-c----hHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChhhHHHHHHH
Q 046638 4 LTYSRCDSSLDFQNVYSSVRT--R-N----QISWNAIIAGFCNLGSGEQALKCFSEMRQA----GIDI-DYFTITSIVGA 71 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~ 71 (306)
..+.+.|++++|+..|++... | + ...+..+...+...|++++|+..+++..+. +..| ...++..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 467889999999999998632 2 3 457888999999999999999999987553 1112 24567778888
Q ss_pred hccccchhhHHHHHHHHHHcCCC-c----cHHHHHHHHHHHHhcCC--------------------hHHHHHHHHhcCc-
Q 046638 72 IGVISGFKEGKQMHALIFKIGYD-S----NVFVQNRLVFMYAICGA--------------------INDANKVFSSMDE- 125 (306)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~- 125 (306)
+...|++++|...+++..+.... + ...++..+...|...|+ +++|.+.+++..+
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998754211 1 13478889999999999 9999999887653
Q ss_pred ----C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 046638 126 ----R----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE----IKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192 (306)
Q Consensus 126 ----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (306)
+ ....+..+...+...|++++|...+++..+.. ..+ ...++..+...+...|++++|...+++..+.
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 23468888999999999999999999886431 111 1336788889999999999999999887653
Q ss_pred CCC---CCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 046638 193 ASL---EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----PG----PSVYKALLSACQVHGNREIAVRSAKRVLDL 261 (306)
Q Consensus 193 ~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (306)
... .+....++..+...+...|++++|...+++.... ++ ..++..+...+...|++++|...++++++.
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 211 1112567888999999999999999999987642 22 346778888999999999999999999987
Q ss_pred CCC
Q 046638 262 WPN 264 (306)
Q Consensus 262 ~p~ 264 (306)
.+.
T Consensus 333 ~~~ 335 (338)
T 3ro2_A 333 SRE 335 (338)
T ss_dssp ---
T ss_pred HHh
Confidence 653
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=4.2e-14 Score=112.86 Aligned_cols=213 Identities=11% Similarity=0.010 Sum_probs=174.8
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHh-------cCCh-------HHHHHHHHhcCc---C-CchhHHHHHHHHHh
Q 046638 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAI-------CGAI-------NDANKVFSSMDE---R-DLVSWNSLLLGCAH 140 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 140 (306)
++|...|+++++..+ .+...|..++..+.. .|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 678899999998754 478888888887763 5886 999999998865 3 44589999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHh-ccCChHH
Q 046638 141 HGYSREAVQLFEQMQKTEIKPDGT-TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLG-RAGFLNE 218 (306)
Q Consensus 141 ~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 218 (306)
.|++++|..+|+++.+..+. +.. .|..++..+.+.|++++|..+|++..+.. |++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999875432 233 78889999999999999999999998754 345666655544432 3799999
Q ss_pred HHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCC-chHHHHHHHHHHhhcCChhhHHHHHHHH
Q 046638 219 AESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDL---WPN-DPAIYVLLSNVSKATDCWDDAGDIRTLM 292 (306)
Q Consensus 219 a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 292 (306)
|..+|++.... .++..|..++..+...|++++|..+|++++.. .|+ ....+..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998763 45678888999999999999999999999995 443 6778899999999999999999999998
Q ss_pred hhcC
Q 046638 293 YNRG 296 (306)
Q Consensus 293 ~~~~ 296 (306)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7653
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=126.01 Aligned_cols=234 Identities=12% Similarity=0.061 Sum_probs=139.0
Q ss_pred chhhhhhcCChHHHHhhhhhccC-----------cchHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-Chh
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRT-----------RNQISWNAIIAGFCNLGSGEQALKCFSEMRQA------GIDI-DYF 63 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~ 63 (306)
+...|...|++++|...|++... .....+..+...|...|++++|+..+++..+. +-.| ...
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA 112 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 35678899999999999988643 13556888999999999999999999998764 2122 346
Q ss_pred hHHHHHHHhccccchhhHHHHHHHHHHc------CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHhcCcC----------
Q 046638 64 TITSIVGAIGVISGFKEGKQMHALIFKI------GYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDER---------- 126 (306)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------- 126 (306)
++..+...+...|++++|...++++.+. +..| ...++..+..+|...|++++|+++|+++.+.
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 7788888999999999999999998864 2112 2345555666666666666666665554321
Q ss_pred -CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC------c
Q 046638 127 -DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP------R 199 (306)
Q Consensus 127 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~ 199 (306)
...++..+..+|...|++++|...++++.+... +. . .+...+. .
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~-~--------------------------~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH--ER-E--------------------------FGSVDDENKPIWMH 243 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HH-H--------------------------HC------CCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--Hh-c--------------------------CCCCCcchHHHHHH
Confidence 112344444444445555555555544433210 00 0 0000011 1
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 200 AEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
...+..+...+...+.+.++...++..... ....++..+...|...|++++|...+++++++.|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 122223333444556666666777666643 23456778888888999999999999988886653
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.68 E-value=3.5e-15 Score=131.23 Aligned_cols=163 Identities=19% Similarity=0.148 Sum_probs=128.3
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHH
Q 046638 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207 (306)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (306)
..+++.|...|.+.|++++|++.|++..+..+. +..++..+..+|.+.|++++|++.|++..+.. |.+..+|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 456777777777788888888888777766443 45677778888888888888888888777644 45677888888
Q ss_pred HHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhH
Q 046638 208 GLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDA 285 (306)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 285 (306)
.+|...|++++|++.|++..+ . .+...|..+...|...|++++|+..|+++++++|+++..+..++.++...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 888888888888888887765 3 34567888888888888888899999988888888888888888899889998888
Q ss_pred HHHHHHHhh
Q 046638 286 GDIRTLMYN 294 (306)
Q Consensus 286 ~~~~~~m~~ 294 (306)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877653
No 70
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.68 E-value=6.7e-14 Score=127.04 Aligned_cols=258 Identities=10% Similarity=0.069 Sum_probs=209.4
Q ss_pred chhhhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhH
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (306)
+..++.+.|++++|++.|.+. .|...|..++.++.+.|++++|++.|....+.. +++.....++.+|++.++++..
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHH
Confidence 346788899999999999764 678888999999999999999999999887754 4444444588899999888854
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 046638 82 KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 161 (306)
..+ ++ .++...+..++..|...|++++|..+|... ..|..++.+|++.|++++|.+.+++. .
T Consensus 1187 e~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1187 EEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred HHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 443 22 346667778999999999999999999996 48999999999999999999999987 2
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHH
Q 046638 162 DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALL 239 (306)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~ 239 (306)
+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++....- .....|+-+.
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Ii-------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELa 1321 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIV-------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 1321 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHH
Confidence 56889999999999999999998776432 25667889999999999999999999988753 3444566666
Q ss_pred HHHHh--cCCHHHHHHHHHHHhhcCC-----CchHHHHHHHHHHhhcCChhhHHHH
Q 046638 240 SACQV--HGNREIAVRSAKRVLDLWP-----NDPAIYVLLSNVSKATDCWDDAGDI 288 (306)
Q Consensus 240 ~~~~~--~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 288 (306)
..|++ -++..++.+.|..-....| .+...|.-++..|.+.|+++.|...
T Consensus 1322 iLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 66554 5677778888877666555 4667899999999999999999843
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.68 E-value=3.5e-15 Score=126.09 Aligned_cols=213 Identities=13% Similarity=0.092 Sum_probs=178.7
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch-hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 046638 43 GEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF-KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121 (306)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 121 (306)
+++++..++...... +.+...+..+..++...|++ ++|...|+++++..+. +..+|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566677777665542 34677888888999999999 9999999999998644 68899999999999999999999999
Q ss_pred hcCc--CCchhHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHcc--------CChHHH
Q 046638 122 SMDE--RDLVSWNSLLLGCAHH---------GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA--------GFIDKG 182 (306)
Q Consensus 122 ~~~~--~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a 182 (306)
+..+ |+...+..+...+... |++++|+..|++..+..+. +...+..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 9874 7778888999999999 9999999999999887544 677888999999988 999999
Q ss_pred HHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRV 258 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (306)
...|++..+.....+.+...|..+..+|...|++++|.+.|++... . .+...+..+...+...|++++|++.+.++
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999875421015888999999999999999999999999875 3 44567888888899999999998766544
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.67 E-value=6.8e-14 Score=106.55 Aligned_cols=202 Identities=10% Similarity=0.035 Sum_probs=107.0
Q ss_pred hHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHh
Q 046638 64 TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAH 140 (306)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~ 140 (306)
.+......+...|++++|...|++.++..++++...+..+..++...|++++|++.|++..+ | +...|..+..+|..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 33333344444444444444444444443323334444444444445555555554444432 1 22344555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC--cHhHHHHHHHHHh
Q 046638 141 HGYSREAVQLFEQMQKTEIKPDG-------TTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP--RAEHYTAIVGLLG 211 (306)
Q Consensus 141 ~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 211 (306)
.|++++|+..|++..+..+. +. ..|..+...+...|++++|.+.|++..+.. |. +...+..+..+|.
T Consensus 89 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYSLGVLFY 164 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHHHHHHHH
Confidence 55555555555555544322 22 235555666666777777777777666432 33 3456666666665
Q ss_pred ccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 046638 212 RAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276 (306)
Q Consensus 212 ~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 276 (306)
..|+ ..++++.. ..+...|.... ....+.+++|...++++++..|+++.+...+....
T Consensus 165 ~~~~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 165 NNGA-----DVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHH-----HHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4432 22333332 12233333322 34456789999999999999999988777776554
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.67 E-value=4.9e-15 Score=121.76 Aligned_cols=287 Identities=9% Similarity=-0.053 Sum_probs=200.6
Q ss_pred hhcCChHHHHhhhhhccC--------cchHHHHHHHHH--HHhcCChHHHH---------HHHHHHHHcCCCCCh-h---
Q 046638 7 SRCDSSLDFQNVYSSVRT--------RNQISWNAIIAG--FCNLGSGEQAL---------KCFSEMRQAGIDIDY-F--- 63 (306)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~--~~~~~~~~~a~---------~~~~~~~~~~~~~~~-~--- 63 (306)
.+.+++++|.++++.+.. ++...|..++.. ....+.+..+. +.++.+.....+.+. .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 788999999999987532 234444544432 11122222222 555555432111111 1
Q ss_pred hHHHHHHHhccccchhhHHHHHHHHHHcCC--C---ccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-----CC-----c
Q 046638 64 TITSIVGAIGVISGFKEGKQMHALIFKIGY--D---SNVFVQNRLVFMYAICGAINDANKVFSSMDE-----RD-----L 128 (306)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~ 128 (306)
.+......+...|++++|...++++.+... . ....++..++.+|...|+++.|...+++..+ ++ .
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 122334456789999999999999986421 1 1346788899999999999999999988763 22 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC--CCCCcHh
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKT----EIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS--LEPPRAE 201 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 201 (306)
.+++.+..+|...|++++|.+.|++..+. +..+ ...++..+..+|...|++++|.+.+++..+... ..|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 46788999999999999999999988653 2111 235678899999999999999999998876110 1133577
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhcC---C-CC---hhhHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCchHHHHH
Q 046638 202 HYTAIVGLLGRAGFLNEAESFINSMSR---N-PG---PSVYKALLSACQVHGN---REIAVRSAKRVLDLWPNDPAIYVL 271 (306)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~---~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~ 271 (306)
++..++..|.+.|++++|...+++... . ++ ...+..+...+...++ +.+|+..+++. ...|.....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 888999999999999999999998764 1 22 1234445555667777 78888888773 233444567889
Q ss_pred HHHHHhhcCChhhHHHHHHHHhh
Q 046638 272 LSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 272 l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
++..|...|++++|...|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.66 E-value=8e-15 Score=107.57 Aligned_cols=158 Identities=19% Similarity=0.090 Sum_probs=82.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc
Q 046638 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213 (306)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (306)
+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. |.+..++..++..+...
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA---PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHh
Confidence 33334444444444444444332221 123334444444444444444444444444332 22444455555555555
Q ss_pred CChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHH
Q 046638 214 GFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTL 291 (306)
Q Consensus 214 ~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 291 (306)
|++++|.+.++++.. +.+...+..+...+...|++++|...++++++..|+++.++..++.++...|++++|.+.+++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555555443 123444555556666666666666666666666666666666666666666666666666666
Q ss_pred Hhhc
Q 046638 292 MYNR 295 (306)
Q Consensus 292 m~~~ 295 (306)
..+.
T Consensus 170 ~~~~ 173 (186)
T 3as5_A 170 ANEL 173 (186)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6543
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.66 E-value=2.4e-13 Score=111.39 Aligned_cols=264 Identities=9% Similarity=-0.052 Sum_probs=174.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----hHHHHHHHhccccchhhHHHHHHHHHHcCC---Cc--cHHHHH
Q 046638 31 NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF----TITSIVGAIGVISGFKEGKQMHALIFKIGY---DS--NVFVQN 101 (306)
Q Consensus 31 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~ 101 (306)
......+...|++++|...+++........+.. ++..+...+...|++++|...+++..+... .+ ...++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344456677888888888888877753222221 345555667778888888888888765321 11 123456
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCc-------C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--c--cHHHH
Q 046638 102 RLVFMYAICGAINDANKVFSSMDE-------R----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK--P--DGTTF 166 (306)
Q Consensus 102 ~l~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~ 166 (306)
.+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 677788888888888888887653 1 1234566777888888888888888887654321 1 23456
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHH----HHHHHHhccCChHHHHHHHHHhcCC-CC-----hhhHH
Q 046638 167 LVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT----AIVGLLGRAGFLNEAESFINSMSRN-PG-----PSVYK 236 (306)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~-~~-----~~~~~ 236 (306)
..+...+...|++++|...+++................ ..+..+...|++++|...+++.... +. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 67777888888888888888877643211110111111 2334467888888888888887753 21 11345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCC-----c-hHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 237 ALLSACQVHGNREIAVRSAKRVLDLWPN-----D-PAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
.+...+...|++++|...++++....+. + ..++..++.++...|+.++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6677788888888888888888763221 1 23667778888888888888888877653
No 76
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=5.7e-15 Score=124.04 Aligned_cols=277 Identities=10% Similarity=0.032 Sum_probs=187.6
Q ss_pred hhhhhhcCChHHHHhhhhhccC-cchHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCChhhHHHHHHHhccc---
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRT-RNQISWNAIIAGFCNLGSG---EQALKCFSEMRQAGIDIDYFTITSIVGAIGVI--- 75 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 75 (306)
...+.+.|++++|.++|++... .++..+..|...|...|+. ++|+.+|++..+. +...+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 4567788999999999998743 4666677777778888888 9999999998864 455566666634333
Q ss_pred --cchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHH---HHHHHhcCc-CCchhHHHHHHHHHhcCCHHHHHH
Q 046638 76 --SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA---NKVFSSMDE-RDLVSWNSLLLGCAHHGYSREAVQ 149 (306)
Q Consensus 76 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a---~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 149 (306)
+++++|..+|++..+.|.. + .+..|..+|...+..+++ .+.+....+ .+...+..|...|...+.++++..
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHH
Confidence 4889999999999998743 2 677788888887765444 344443332 466788888899988886555544
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHccC---ChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc----CChHHHHHH
Q 046638 150 LFEQMQKTEIKPDGTTFLVVLSACCHAG---FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA----GFLNEAESF 222 (306)
Q Consensus 150 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~ 222 (306)
....+.+.-...+...+..+...|...| +.++|++.|++..+.+. ++...+..+...|... +++++|.+.
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~---~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT---VTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---SCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 4333322211222337778888899999 99999999999988763 4666667888888765 799999999
Q ss_pred HHHhcCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcC-----ChhhHHHHHHHHh
Q 046638 223 INSMSRNPGPSVYKALLSA-C--QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD-----CWDDAGDIRTLMY 293 (306)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~m~ 293 (306)
|++.. ..++..+..+... + ...+++++|...|+++.+.. ++..+..|+..|. .| ++++|.+.|++..
T Consensus 240 ~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 240 LEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 99999 6677778888777 4 56899999999999998654 6788999999998 45 9999999998765
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=2.2e-14 Score=118.01 Aligned_cols=229 Identities=10% Similarity=-0.026 Sum_probs=180.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHhccccchhhHHHHHHHHHHcCC------CccHHHHH
Q 046638 33 IIAGFCNLGSGEQALKCFSEMRQAGI-DID----YFTITSIVGAIGVISGFKEGKQMHALIFKIGY------DSNVFVQN 101 (306)
Q Consensus 33 li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 101 (306)
....+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+++..+... .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 56678899999999999999876410 122 35778888899999999999999999886421 11246788
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCc-----CC----chhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CccHHHHH
Q 046638 102 RLVFMYAICGAINDANKVFSSMDE-----RD----LVSWNSLLLGCAHHGYSREAVQLFEQMQKT----EI-KPDGTTFL 167 (306)
Q Consensus 102 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~ 167 (306)
.++.+|...|++++|...|++..+ ++ ..++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999998874 22 247888999999999999999999998762 33 33456788
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCC--CCCcHhHHHHHHHHHhccCC---hHHHHHHHHHhcCCCC-hhhHHHHHHH
Q 046638 168 VVLSACCHAGFIDKGLQYFYLMRNDASL--EPPRAEHYTAIVGLLGRAGF---LNEAESFINSMSRNPG-PSVYKALLSA 241 (306)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~l~~~ 241 (306)
.+..++...|++++|...+++..+.... .+.....+..+...|...|+ +++|..++++....|. ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999887653211 11123345778889999999 8899999998854433 3467778889
Q ss_pred HHhcCCHHHHHHHHHHHhhc
Q 046638 242 CQVHGNREIAVRSAKRVLDL 261 (306)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~ 261 (306)
|...|++++|...++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999874
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.63 E-value=4.8e-14 Score=107.40 Aligned_cols=191 Identities=13% Similarity=-0.002 Sum_probs=136.2
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHhcCc----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 046638 95 SNVFVQNRLVFMYAICGAINDANKVFSSMDE----RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170 (306)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 170 (306)
.++..+...+..+...|++++|+..|++..+ ++...+..+..++...|++++|+..|++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3557777788888888888888888887763 45666666888888888888888888888776543 556777788
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCCCCCcH-------hHHHHHHHHHhccCChHHHHHHHHHhcCC-CC---hhhHHHHH
Q 046638 171 SACCHAGFIDKGLQYFYLMRNDASLEPPRA-------EHYTAIVGLLGRAGFLNEAESFINSMSRN-PG---PSVYKALL 239 (306)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~---~~~~~~l~ 239 (306)
.++...|++++|...+++..+.. |.+. .+|..+...+...|++++|++.|++.... |+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 88888888888888888877654 3344 45777777888888888888888887763 44 34566666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
..+...| ...++++....+.++..+.... ....+.+++|+..+++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 6665443 4456666666665554444333 344566799999999887643
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.62 E-value=8.7e-14 Score=101.96 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 046638 97 VFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173 (306)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 173 (306)
...+..++..+...|++++|...|+++.+ .+...+..++..+...|++++|...++++.+..+. +...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 45677788889999999999999998875 35667888889999999999999999998876433 567788888999
Q ss_pred HccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHH
Q 046638 174 CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIA 251 (306)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 251 (306)
...|++++|.+.++++.+.. |.+...+..++..+...|++++|...+++.... .+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN---PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC---cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988754 457788899999999999999999999988752 4567788888999999999999
Q ss_pred HHHHHHHhhcCCCch
Q 046638 252 VRSAKRVLDLWPNDP 266 (306)
Q Consensus 252 ~~~~~~~~~~~p~~~ 266 (306)
...++++++..|+++
T Consensus 164 ~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 164 LPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCch
Confidence 999999998777654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.59 E-value=3.7e-13 Score=110.52 Aligned_cols=230 Identities=11% Similarity=-0.017 Sum_probs=179.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHhccccchhhHHHHHHHHHHcCC-----C-ccHHH
Q 046638 31 NAIIAGFCNLGSGEQALKCFSEMRQAGI-DID----YFTITSIVGAIGVISGFKEGKQMHALIFKIGY-----D-SNVFV 99 (306)
Q Consensus 31 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~ 99 (306)
......+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+++..+... . ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445667899999999999999876421 122 35677788899999999999999999876421 1 12567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCc-----CC----chhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCccHHH
Q 046638 100 QNRLVFMYAICGAINDANKVFSSMDE-----RD----LVSWNSLLLGCAHHGYSREAVQLFEQMQK-----TEIKPDGTT 165 (306)
Q Consensus 100 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 165 (306)
++.++.+|...|++++|.+.|++..+ ++ ..++..+..+|...|++++|...+++... ..+ ....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHH
Confidence 88899999999999999999988764 22 34788899999999999999999999876 332 23677
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCC--CCCcHhHHHHHHHHHhccCC---hHHHHHHHHHhcCCCC-hhhHHHHH
Q 046638 166 FLVVLSACCHAGFIDKGLQYFYLMRNDASL--EPPRAEHYTAIVGLLGRAGF---LNEAESFINSMSRNPG-PSVYKALL 239 (306)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~l~ 239 (306)
+..+..++.+.|++++|...+++..+.... .+.....+..+...|...++ +.+|...+++....++ ...+..+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la 343 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 888999999999999999999988764322 12234556777778888888 8899999988654333 34566788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhc
Q 046638 240 SACQVHGNREIAVRSAKRVLDL 261 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~ 261 (306)
..|...|++++|...|+++++.
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 8899999999999999998763
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.58 E-value=5.8e-14 Score=110.10 Aligned_cols=221 Identities=10% Similarity=0.051 Sum_probs=130.0
Q ss_pred cccchhhHHHHHHHHHHc-------CCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-------C----CchhHHHHH
Q 046638 74 VISGFKEGKQMHALIFKI-------GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-------R----DLVSWNSLL 135 (306)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~ 135 (306)
..|++++|..++++.++. ..+....++..+..+|...|++++|+..|+++.+ + ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445555555555554431 1122345666667777777777777777666542 1 234566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc------CCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhc-----CCCCCCcHhHH
Q 046638 136 LGCAHHGYSREAVQLFEQMQKT------EIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRND-----ASLEPPRAEHY 203 (306)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ 203 (306)
..|...|++++|...+++.... ...| ...++..+...+...|++++|..++++..+. +...|....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7777777777777777776543 1112 3456677777777788888887777776653 11122345667
Q ss_pred HHHHHHHhccCChHHHHHHHHHhcCC----------CC-hhhHHHHHHHHHhcCC------HHHHHHHHHHHhhcCCCch
Q 046638 204 TAIVGLLGRAGFLNEAESFINSMSRN----------PG-PSVYKALLSACQVHGN------REIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~~ 266 (306)
..++..|...|++++|...+++.... +. ...|..+...+...+. +..+...++......|...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 77778888888888888887776531 12 2223333333333222 3333333333333445566
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 267 AIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 267 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
.++..++.+|...|++++|..++++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888999999999999998887764
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=1.5e-12 Score=106.66 Aligned_cols=259 Identities=10% Similarity=-0.007 Sum_probs=187.7
Q ss_pred hhhhhcCChHHHHhhhhhcc----Ccch----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hhHHHHHH
Q 046638 4 LTYSRCDSSLDFQNVYSSVR----TRNQ----ISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDY----FTITSIVG 70 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~ 70 (306)
..+...|++++|...+++.. ..+. ..++.+...+...|++++|...+++..+.... ++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 35667899999999988742 2222 25667778899999999999999988653211 122 23456677
Q ss_pred HhccccchhhHHHHHHHHHHc----CCC--c-cHHHHHHHHHHHHhcCChHHHHHHHHhcCc--C------CchhHHHHH
Q 046638 71 AIGVISGFKEGKQMHALIFKI----GYD--S-NVFVQNRLVFMYAICGAINDANKVFSSMDE--R------DLVSWNSLL 135 (306)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------~~~~~~~l~ 135 (306)
.+...|++++|...+++..+. +.. | ...++..+..++...|++++|...+++..+ + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 888999999999999988753 221 2 345677788999999999999999998753 1 124677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcc--HHHHH----HHHHHHHccCChHHHHHHHHHHHhcCCCCC-CcHhHHHHHHH
Q 046638 136 LGCAHHGYSREAVQLFEQMQKTEIKPD--GTTFL----VVLSACCHAGFIDKGLQYFYLMRNDASLEP-PRAEHYTAIVG 208 (306)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~ 208 (306)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++........+ .....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 899999999999999999865421111 11111 233457799999999999998875432111 11235677889
Q ss_pred HHhccCChHHHHHHHHHhcCC----C---Ch-hhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 046638 209 LLGRAGFLNEAESFINSMSRN----P---GP-SVYKALLSACQVHGNREIAVRSAKRVLDLW 262 (306)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~----~---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (306)
.+...|++++|...+++.... + +. ..+..+..++...|+.++|...+++++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 999999999999999987642 1 11 245566777889999999999999998743
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.57 E-value=2.4e-13 Score=119.69 Aligned_cols=163 Identities=8% Similarity=-0.070 Sum_probs=143.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (306)
+..+|+.|...|.+.|++++|++.|++.++.. +-+..++..+..++.+.|++++|+..|++.++..+. +..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 57789999999999999999999999999864 234678889999999999999999999999998754 6889999999
Q ss_pred HHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHH
Q 046638 106 MYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (306)
+|...|++++|++.|++..+ .+..+|+.+..+|.+.|++++|++.|++..+..+. +...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999998874 35678999999999999999999999999887544 567888999999999999999
Q ss_pred HHHHHHHHh
Q 046638 183 LQYFYLMRN 191 (306)
Q Consensus 183 ~~~~~~~~~ 191 (306)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887654
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.56 E-value=1.9e-13 Score=108.14 Aligned_cols=100 Identities=11% Similarity=0.012 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcc-CChHHHHHHHHHHHhcCCCCCC---cHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CChh------
Q 046638 165 TFLVVLSACCHA-GFIDKGLQYFYLMRNDASLEPP---RAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPS------ 233 (306)
Q Consensus 165 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------ 233 (306)
++..+...|... |++++|+..|++..+....... ...++..++..+.+.|++++|+..|++.... |+..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 344445555553 5555555555544432110000 0233455555555555555555555554431 1110
Q ss_pred --hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 234 --VYKALLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 234 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
.|..+..++...|++++|...|++++++.|+
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 2344444555555555555555555555554
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.55 E-value=5.8e-13 Score=105.37 Aligned_cols=213 Identities=8% Similarity=-0.078 Sum_probs=156.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHc----CCCcc-HHHHHHHHHHHHhcCChHHH
Q 046638 42 SGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKI----GYDSN-VFVQNRLVFMYAICGAINDA 116 (306)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a 116 (306)
++++|...|++. ...+...|++++|...|++..+. |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 23466788999999988887654 32222 56888899999999999999
Q ss_pred HHHHHhcCc-----CC----chhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC---c-c-HHHHHHHHHHHHccCChHH
Q 046638 117 NKVFSSMDE-----RD----LVSWNSLLLGCAHH-GYSREAVQLFEQMQKTEIK---P-D-GTTFLVVLSACCHAGFIDK 181 (306)
Q Consensus 117 ~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~---p-~-~~~~~~l~~~~~~~~~~~~ 181 (306)
+..|++..+ .+ ..+++.+...|... |++++|+..|++..+.... + . ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999888764 11 34788899999996 9999999999998754211 1 1 3467888999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcH-----hHHHHHHHHHhccCChHHHHHHHHHhcCC-CChh------hHHHHHHHHH--hcCC
Q 046638 182 GLQYFYLMRNDASLEPPRA-----EHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPS------VYKALLSACQ--VHGN 247 (306)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~l~~~~~--~~~~ 247 (306)
|+..|++..+.....+ .. ..+..++.++...|++++|...|++...- |+.. .+..++.++. ..++
T Consensus 177 A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNR-LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHTTSSCT-TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHhcCC-cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 9999999887543221 21 25778888999999999999999998862 3321 2344555554 4567
Q ss_pred HHHHHHHHHHHhhcCCCchHHHH
Q 046638 248 REIAVRSAKRVLDLWPNDPAIYV 270 (306)
Q Consensus 248 ~~~a~~~~~~~~~~~p~~~~~~~ 270 (306)
+++|+..|+++..++|.....+.
T Consensus 256 ~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHhccCCccHHHHHHHHH
Confidence 89999999888888886544333
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.54 E-value=3.1e-12 Score=99.92 Aligned_cols=238 Identities=9% Similarity=0.021 Sum_probs=144.6
Q ss_pred cCChHHHHhhhhhccCcchHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHH
Q 046638 9 CDSSLDFQNVYSSVRTRNQIS-WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87 (306)
Q Consensus 9 ~g~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (306)
.|.+..++.-...+.+.+... -.-+.++|...|++... ....|....+..+...+ .. .++..+++
T Consensus 26 ~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~----~a~~~l~~ 91 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DT----KNIEELEN 91 (310)
T ss_dssp TTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TT----TCCHHHHH
T ss_pred hhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-cc----cHHHHHHH
Confidence 466666666444443322222 22244667777766532 11223333444443333 21 26667777
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcC-----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-
Q 046638 88 IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER-----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP- 161 (306)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p- 161 (306)
..+.+ .++..++..+..++...|++++|++++.+...+ +...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 92 l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d 168 (310)
T 3mv2_B 92 LLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IED 168 (310)
T ss_dssp TTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCH
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc
Confidence 66654 344555567778888888888888888877432 3456667777888888888888888888665 34
Q ss_pred ----cHHHHHHHHHHHH--ccC--ChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-----
Q 046638 162 ----DGTTFLVVLSACC--HAG--FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR----- 228 (306)
Q Consensus 162 ----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----- 228 (306)
+..+...+..++. ..| +..+|..+|+++.+.. |+......+..++.+.|++++|.+.++.+..
T Consensus 169 ~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~----p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 169 TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF----PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS----CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 3455555655532 233 7888888888876543 2422333444477788888888888876554
Q ss_pred -------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHH
Q 046638 229 -------NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIY 269 (306)
Q Consensus 229 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 269 (306)
..++.+...+|......|+ +|.++++++.+..|+++.+.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 2244555455555555665 77888888888888776543
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.53 E-value=2.9e-12 Score=97.30 Aligned_cols=186 Identities=9% Similarity=-0.011 Sum_probs=120.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH--HHHH
Q 046638 96 NVFVQNRLVFMYAICGAINDANKVFSSMDE--RDL----VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG--TTFL 167 (306)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~ 167 (306)
+...+..++..+.+.|++++|+..|+++.+ |+. ..+..++.+|.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677778888888888888888764 432 46777788888888888888888888765443211 2344
Q ss_pred HHHHHHHc------------------cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC
Q 046638 168 VVLSACCH------------------AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229 (306)
Q Consensus 168 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (306)
.+..++.. .|++++|...|+++.+.. |.+..++........ +...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~~----------~~~~~--- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLVF----------LKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHHH----------HHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHH----------HHHHH---
Confidence 44555543 344555555555554433 112222211110000 00000
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch---HHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCC
Q 046638 230 PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDP---AIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299 (306)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 299 (306)
......+...|...|++++|+..|+++++..|+++ ..+..++.++.+.|++++|.+.++.+...+...
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00112456678899999999999999999999865 578899999999999999999999888765443
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.53 E-value=9.5e-12 Score=97.15 Aligned_cols=239 Identities=10% Similarity=-0.022 Sum_probs=171.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 34 IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 34 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
++-..-.|++..++.-. .+.....+...-..+.+++...|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 44566789999998733 3222122223334455777778877642 12344444555444443 322
Q ss_pred HHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046638 114 NDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK-PDGTTFLVVLSACCHAGFIDKGLQYFYLM 189 (306)
Q Consensus 114 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (306)
|+..|++..+ ++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7788887763 45556678889999999999999999998776642 25677888999999999999999999999
Q ss_pred HhcCCCCCC-----cHhHHHHHHHHH--hc--cCChHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 046638 190 RNDASLEPP-----RAEHYTAIVGLL--GR--AGFLNEAESFINSMSRN-PGPSVYKALLSACQVHGNREIAVRSAKRVL 259 (306)
Q Consensus 190 ~~~~~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (306)
.+.. | +..+...++.++ .. .+++.+|..+|+++..+ |+..+-..++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~~----~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNAI----EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHS----CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcC----ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8754 3 245556666553 33 34899999999999876 543344445558999999999999999877
Q ss_pred hc----------CCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 260 DL----------WPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 260 ~~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
+. +|+++.++..++.+....|+ +|.++++++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 75 58899999888877777886 889999999874
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.53 E-value=7.7e-13 Score=102.86 Aligned_cols=187 Identities=12% Similarity=0.044 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcCc--CC----chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-c-cHHHHHH
Q 046638 97 VFVQNRLVFMYAICGAINDANKVFSSMDE--RD----LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK-P-DGTTFLV 168 (306)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~~~~ 168 (306)
...+..++..+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|...|++..+..+. | ....+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444455555555555555555555543 21 234455555555556666666666555544221 1 1233444
Q ss_pred HHHHHHc--------cCChHHHHHHHHHHHhcCCCCCCcHhH-----------------HHHHHHHHhccCChHHHHHHH
Q 046638 169 VLSACCH--------AGFIDKGLQYFYLMRNDASLEPPRAEH-----------------YTAIVGLLGRAGFLNEAESFI 223 (306)
Q Consensus 169 l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~~~a~~~~ 223 (306)
+..++.. .|++++|...|+++.+.... +... +..++..|.+.|++++|+..|
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN---HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4555555 56666666666655544321 2222 256788899999999999999
Q ss_pred HHhcCC-CC----hhhHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCch---HHHHHHHHHHhhcCChhhH
Q 046638 224 NSMSRN-PG----PSVYKALLSACQVH----------GNREIAVRSAKRVLDLWPNDP---AIYVLLSNVSKATDCWDDA 285 (306)
Q Consensus 224 ~~~~~~-~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a 285 (306)
+++... |+ ...+..+..+|... |++++|...|+++++..|+++ .....+..++.+.++++++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 988752 44 23566777777766 889999999999999999874 3455556666666655544
Q ss_pred H
Q 046638 286 G 286 (306)
Q Consensus 286 ~ 286 (306)
.
T Consensus 252 ~ 252 (261)
T 3qky_A 252 A 252 (261)
T ss_dssp T
T ss_pred h
Confidence 3
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.52 E-value=5.1e-13 Score=104.65 Aligned_cols=199 Identities=14% Similarity=0.095 Sum_probs=108.1
Q ss_pred hhHHHHHHHhccccchhhHHHHHHHHHHc------CC-CccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-------C--
Q 046638 63 FTITSIVGAIGVISGFKEGKQMHALIFKI------GY-DSNVFVQNRLVFMYAICGAINDANKVFSSMDE-------R-- 126 (306)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~-- 126 (306)
.++..+...+...|++++|...++++.+. +- +....++..+..+|...|++++|.+.|++..+ +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444455555555555555555555433 11 12234555566666666666666666655542 1
Q ss_pred --CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhc-----
Q 046638 127 --DLVSWNSLLLGCAHHGYSREAVQLFEQMQKT------EIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRND----- 192 (306)
Q Consensus 127 --~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 192 (306)
...++..+...|...|++++|...++++.+. +..| ...++..+..++...|++++|..++++..+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 1345666666777777777777777766543 1122 2445667777777777777777777766542
Q ss_pred -CCCCCCcHhHHHHHHHHHhccCC------hHHHHHHHHHhcCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 046638 193 -ASLEPPRAEHYTAIVGLLGRAGF------LNEAESFINSMSRN-P-GPSVYKALLSACQVHGNREIAVRSAKRVLDL 261 (306)
Q Consensus 193 -~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (306)
+...+.....+..+...+...+. +..+...++..... | ...++..+...|...|++++|...++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11122233444444444443333 33333344433322 1 2345677788888888888888888887764
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.51 E-value=1.8e-12 Score=100.77 Aligned_cols=170 Identities=9% Similarity=-0.018 Sum_probs=141.4
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHH
Q 046638 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD--GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203 (306)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 203 (306)
.+...+..+...+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|...|+++.+.....+....++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4566778888899999999999999999988654311 56788899999999999999999999998764434456778
Q ss_pred HHHHHHHhc--------cCChHHHHHHHHHhcCC-CCh-hhH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 046638 204 TAIVGLLGR--------AGFLNEAESFINSMSRN-PGP-SVY-----------------KALLSACQVHGNREIAVRSAK 256 (306)
Q Consensus 204 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~-~~~-~~~-----------------~~l~~~~~~~~~~~~a~~~~~ 256 (306)
..+..++.. .|++++|...|+++... |+. ... ..+...|...|++++|+..|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 889999998 99999999999998763 443 333 455777999999999999999
Q ss_pred HHhhcCCC---chHHHHHHHHHHhhc----------CChhhHHHHHHHHhhc
Q 046638 257 RVLDLWPN---DPAIYVLLSNVSKAT----------DCWDDAGDIRTLMYNR 295 (306)
Q Consensus 257 ~~~~~~p~---~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 295 (306)
++++..|+ .+..+..++.+|... |++++|...|+++.+.
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 99999887 456888999999876 8899999999998864
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.49 E-value=1.2e-13 Score=97.83 Aligned_cols=143 Identities=11% Similarity=0.031 Sum_probs=113.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhc
Q 046638 134 LLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR 212 (306)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (306)
|...+...|++++|+..+++.... .| +...+..+...|.+.|++++|++.|++..+.. |.++.+|..+..+|..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 445566678888998888887554 23 34456678888999999999999999888754 5588889999999999
Q ss_pred cCChHHHHHHHHHhcC-CC-ChhhHHHHHHHHHhcCCHHHHHHH-HHHHhhcCCCchHHHHHHHHHHhhcCC
Q 046638 213 AGFLNEAESFINSMSR-NP-GPSVYKALLSACQVHGNREIAVRS-AKRVLDLWPNDPAIYVLLSNVSKATDC 281 (306)
Q Consensus 213 ~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 281 (306)
.|++++|+..|++... .| ++..|..+...|...|++++|.+. +++++++.|+++.+|......+...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999998876 34 467788888899999998776655 589999999999999998888888774
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.48 E-value=6e-13 Score=117.36 Aligned_cols=169 Identities=13% Similarity=-0.016 Sum_probs=145.6
Q ss_pred HhcCChHHHHHHHHhcC--------c---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHcc
Q 046638 108 AICGAINDANKVFSSMD--------E---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176 (306)
Q Consensus 108 ~~~g~~~~a~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 176 (306)
...|++++|++.+++.. + .+...+..+..++.+.|++++|+..|++..+..+. +...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 67899999999999886 2 45678888999999999999999999999887544 677888899999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHH
Q 046638 177 GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRS 254 (306)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~ 254 (306)
|++++|.+.|++..+.. |.+...+..+..+|.+.|++++ ++.|++... . .+...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998765 4577889999999999999999 999999875 3 4567788999999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHhhcCC
Q 046638 255 AKRVLDLWPNDPAIYVLLSNVSKATDC 281 (306)
Q Consensus 255 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 281 (306)
|+++++.+|++...+..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999877665
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.45 E-value=8.4e-12 Score=86.12 Aligned_cols=125 Identities=17% Similarity=0.190 Sum_probs=70.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHh
Q 046638 167 LVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQV 244 (306)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~ 244 (306)
..+...+...|++++|..+++++.+.. |.+...+..++..+...|++++|...++++.. +.+...+..+...+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444445555555555555544332 22444455555555555555555555555443 1233445555556666
Q ss_pred cCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
.|++++|...++++.+..|+++..+..++.++...|++++|.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666666666666666666666666666666666666654
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.43 E-value=1.5e-11 Score=84.88 Aligned_cols=131 Identities=17% Similarity=0.249 Sum_probs=97.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHH
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (306)
.|..++..+...|++++|..+++++.+.... +...+..+...+...|++++|..+++++.... |.+...+..++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHHHHH
Confidence 4666777777788888888888877765433 45666777777788888888888888777644 3466677778888
Q ss_pred HhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 210 LGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
+...|++++|.+.++++... .+...+..+...+...|++++|...++++++..|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888888877652 34566777778888888888888888888877774
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.43 E-value=1.1e-11 Score=92.80 Aligned_cols=129 Identities=10% Similarity=0.016 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHh
Q 046638 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLG 211 (306)
Q Consensus 132 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (306)
..+..+|.+.|++++|+..|++..+..+. +...+..+..++...|++++|...|+++.+.. |.+..++..+..+|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHH
Confidence 44888899999999999999999887654 67788889999999999999999999988755 558888999998887
Q ss_pred ccCC--hHHHHHHHHHhcCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 046638 212 RAGF--LNEAESFINSMSRNPGPS--VYKALLSACQVHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 212 ~~~~--~~~a~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
..|+ .+.+...++.... |++. .+.....++...|++++|+..|+++++..|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSS-PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC---C-CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 4456666666653 3332 34445666777899999999999999999964
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.43 E-value=1.5e-11 Score=97.00 Aligned_cols=175 Identities=8% Similarity=-0.056 Sum_probs=124.5
Q ss_pred HHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 046638 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194 (306)
Q Consensus 115 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (306)
.....+......+...+..+...+.+.|++++|...|++..+..+. +...+..+...+...|++++|...++++....
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~- 181 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD- 181 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-
Confidence 3334444444344556667777778888888888888888776543 55667777888888888888888888776543
Q ss_pred CCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc--hHHHH
Q 046638 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND--PAIYV 270 (306)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~ 270 (306)
|............+...++.++|...+++... . .+...+..+...+...|++++|...|+++++..|++ ...+.
T Consensus 182 --p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 182 --QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp --CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred --cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 21222233333446667777778888877765 2 345677778888888888888888888888888876 77888
Q ss_pred HHHHHHhhcCChhhHHHHHHHHh
Q 046638 271 LLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 271 ~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
.++.++...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 88888888888888888876654
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.43 E-value=3.8e-11 Score=90.20 Aligned_cols=105 Identities=13% Similarity=-0.009 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcC-CchhHHHHHHHHHhcC----CHHHHHHHHHHH
Q 046638 80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER-DLVSWNSLLLGCAHHG----YSREAVQLFEQM 154 (306)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~----~~~~a~~~~~~m 154 (306)
+|.++|++..+.| +...+..|...|...+++++|++.|++..+. +...+..|...|.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3455555555543 4445555555555555555555555554432 33344444444444 3 455555555544
Q ss_pred HhcCCCccHHHHHHHHHHHHc----cCChHHHHHHHHHHHh
Q 046638 155 QKTEIKPDGTTFLVVLSACCH----AGFIDKGLQYFYLMRN 191 (306)
Q Consensus 155 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 191 (306)
.+.| +...+..+...|.. .+++++|.++|++..+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 4332 22333334444433 4444444444444443
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.40 E-value=1e-09 Score=86.49 Aligned_cols=230 Identities=9% Similarity=0.017 Sum_probs=179.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHhcccc--chhhHHHHHHHHHHcCCCccHHHHHHHHHHH----Hhc-
Q 046638 39 NLGSGEQALKCFSEMRQAGIDIDY-FTITSIVGAIGVIS--GFKEGKQMHALIFKIGYDSNVFVQNRLVFMY----AIC- 110 (306)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 110 (306)
.....++|+++++.++..+ |+. ..|+.--.++...+ ++++++.+++.++...++ +..+|+.-..++ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 45 AEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 3444579999999999864 544 55677777777777 999999999999998765 666777665555 555
Q ss_pred --CChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC-----
Q 046638 111 --GAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSR--EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF----- 178 (306)
Q Consensus 111 --g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----- 178 (306)
+++++++++++++.+ .+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 789999999999875 46678888888888888888 999999999988766 77777777777777776
Q ss_pred -hHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHH-HHHHHHHhcC-----CCChhhHHHHHHHHHhcCCHHHH
Q 046638 179 -IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE-AESFINSMSR-----NPGPSVYKALLSACQVHGNREIA 251 (306)
Q Consensus 179 -~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a 251 (306)
++++++.++.+.... |.+..+|+.+...+.+.|+..+ +..+.++... ..++..+..+...+.+.|+.++|
T Consensus 201 ~~~eEl~~~~~aI~~~---p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC---PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhC---CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 888999998888755 4588889998888888887444 5567777654 24667788888889899999999
Q ss_pred HHHHHHHhh-cCCCchHHHHHHHHH
Q 046638 252 VRSAKRVLD-LWPNDPAIYVLLSNV 275 (306)
Q Consensus 252 ~~~~~~~~~-~~p~~~~~~~~l~~~ 275 (306)
.++++.+.+ .+|.....+...+..
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHhccChHHHHHHHHHHhh
Confidence 999999987 789877777665543
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.40 E-value=2.8e-11 Score=106.76 Aligned_cols=169 Identities=10% Similarity=-0.056 Sum_probs=130.7
Q ss_pred ccccchhhHHHHHHHHH--------HcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhc
Q 046638 73 GVISGFKEGKQMHALIF--------KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHH 141 (306)
Q Consensus 73 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 141 (306)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|+..|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788899999998888 443 33567788888889999999999999988874 3567888888888999
Q ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHH
Q 046638 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES 221 (306)
Q Consensus 142 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (306)
|++++|...|++..+..+. +...+..+..++.+.|++++ .+.|++..+.. |.+...+..+..++.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN---DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC---CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988876543 55667788888889999988 88888887654 4577888889999999999999999
Q ss_pred HHHHhcCC-CC-hhhHHHHHHHHHhcCC
Q 046638 222 FINSMSRN-PG-PSVYKALLSACQVHGN 247 (306)
Q Consensus 222 ~~~~~~~~-~~-~~~~~~l~~~~~~~~~ 247 (306)
.|++.... |+ ...+..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99988763 54 4556666666655444
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.38 E-value=2e-11 Score=105.72 Aligned_cols=160 Identities=10% Similarity=-0.010 Sum_probs=124.3
Q ss_pred cCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHH
Q 046638 110 CGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186 (306)
Q Consensus 110 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (306)
.|++++|++.|++..+ .+...|..+...+.+.|++++|.+.|++..+.... +...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 35678899999999999999999999999877543 5778888999999999999999999
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhc---CCHHHHHHHHHHHhhc
Q 046638 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVH---GNREIAVRSAKRVLDL 261 (306)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 261 (306)
++..+.. |.+...+..+..+|...|++++|.+.|++... . .+...+..+...+... |+.++|.+.++++++.
T Consensus 81 ~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA---PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9988755 45788999999999999999999999999876 2 4566788888899999 9999999999999999
Q ss_pred CCCchHHHHHHH
Q 046638 262 WPNDPAIYVLLS 273 (306)
Q Consensus 262 ~p~~~~~~~~l~ 273 (306)
.|++...+..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 998777776665
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.37 E-value=2.3e-11 Score=96.92 Aligned_cols=133 Identities=14% Similarity=0.004 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCcc--HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC---CCcHh
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTE---IKPD--GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE---PPRAE 201 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 201 (306)
+|+.+..+|...|++++|+..|++..+.- -.|. ..++..+..+|.. |++++|+..|++..+..... .....
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 34444445555555555555554443210 0111 2344445555555 55555555555544321100 00134
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhcCC----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 202 HYTAIVGLLGRAGFLNEAESFINSMSRN----PG----PSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
++..+...|.+.|++++|+..|++.... +. ...+..++..+...|++++|...|++++ ..|.
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 4555555566666666666666555431 11 1133344444555566666666666666 5553
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.37 E-value=1.6e-11 Score=89.43 Aligned_cols=75 Identities=11% Similarity=-0.016 Sum_probs=41.8
Q ss_pred HHHHHHHhcC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc--hHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 219 AESFINSMSR-NP-GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND--PAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 219 a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
|...+++... .| +...+..+...+...|++++|...|+++++..|+. +..+..++.++...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4444444443 22 34455555555666666666666666666665542 3456666666666666666666665443
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.36 E-value=8.3e-11 Score=89.22 Aligned_cols=185 Identities=11% Similarity=-0.016 Sum_probs=132.7
Q ss_pred ChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CCch----hHH
Q 046638 61 DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS--NVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLV----SWN 132 (306)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~ 132 (306)
+...+..+...+.+.|++++|...|+++++..+.. ....+..++.+|.+.|++++|+..|+++.+ |+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667778889999999999999999876432 246788899999999999999999999874 4332 455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 046638 133 SLLLGCAH------------------HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194 (306)
Q Consensus 133 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (306)
.+..++.. .|++++|...|+++.+..+. +........ ....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~--------------~l~~~~~~-- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATK--------------RLVFLKDR-- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHH--------------HHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHH--------------HHHHHHHH--
Confidence 56666654 57899999999999876433 222222111 11111100
Q ss_pred CCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 046638 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGP----SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 266 (306)
.......++..|.+.|++++|...|+++... |+. ..+..+..++.+.|+.++|.+.++.+....|++.
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 1112345677888899999999999988763 543 3577788889999999999999998888888653
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.35 E-value=9.1e-10 Score=86.75 Aligned_cols=214 Identities=10% Similarity=0.039 Sum_probs=175.7
Q ss_pred cchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC--ChHHHHHHHHhcCc---CCchhHHHHHHHH----Hhc---CC
Q 046638 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG--AINDANKVFSSMDE---RDLVSWNSLLLGC----AHH---GY 143 (306)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 143 (306)
...++|+.+.+.++..++. +..+|+.-..++...| +++++++.++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3446899999999998755 7788999888999999 99999999999875 3556777666665 555 78
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChH--HHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCC------
Q 046638 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID--KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF------ 215 (306)
Q Consensus 144 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 215 (306)
+++++++++++.+..++ +...|+.-.-.+.+.|.++ ++++.++++.+.. |.+..+|+.....+...++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccchhhh
Confidence 99999999999988765 7778877777778888888 9999999999866 4588889888888888777
Q ss_pred hHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHH-HHHHHHHHHhhcC---CCchHHHHHHHHHHhhcCChhhHHHHH
Q 046638 216 LNEAESFINSMSR-N-PGPSVYKALLSACQVHGNRE-IAVRSAKRVLDLW---PNDPAIYVLLSNVSKATDCWDDAGDIR 289 (306)
Q Consensus 216 ~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~ 289 (306)
++++++.++++.. . .|...|+.+...+.+.|+.. .+..+..++.+.. |.++..+..++.+|.+.|+.++|.+++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 8899999988875 3 56677888888888888744 4566777777765 778899999999999999999999999
Q ss_pred HHHhh
Q 046638 290 TLMYN 294 (306)
Q Consensus 290 ~~m~~ 294 (306)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.35 E-value=3.1e-11 Score=104.48 Aligned_cols=149 Identities=9% Similarity=-0.090 Sum_probs=111.1
Q ss_pred ccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHH
Q 046638 75 ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLF 151 (306)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 151 (306)
.|++++|.+.++++.+..+. +...+..+...|...|++++|.+.|++..+ .+...+..+..+|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999998887543 678888999999999999999999998875 34668888999999999999999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc---CChHHHHHHHHHhcC
Q 046638 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA---GFLNEAESFINSMSR 228 (306)
Q Consensus 152 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 228 (306)
++..+.... +...+..+..++...|++++|.+.+++..+.. |.+...+..+..++... |++++|.+.+++...
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 998877543 56788889999999999999999999988754 44778888999999999 999999999988875
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.34 E-value=3.2e-10 Score=85.13 Aligned_cols=171 Identities=11% Similarity=-0.035 Sum_probs=101.6
Q ss_pred HHHHHHhcCc-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccC----ChHHHHHHHHHHH
Q 046638 116 ANKVFSSMDE-RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG----FIDKGLQYFYLMR 190 (306)
Q Consensus 116 a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 190 (306)
|++.|++..+ .+..++..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444433 355566666666666666666666666666554 33444555555555 4 6666666666665
Q ss_pred hcCCCCCCcHhHHHHHHHHHhc----cCChHHHHHHHHHhcCCCC----hhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 046638 191 NDASLEPPRAEHYTAIVGLLGR----AGFLNEAESFINSMSRNPG----PSVYKALLSACQV----HGNREIAVRSAKRV 258 (306)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 258 (306)
+.+ ++.++..|...|.. .+++++|.++|++.....+ +..+..|...|.. .+++++|...|+++
T Consensus 81 ~~g-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 81 EAG-----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HTT-----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HCC-----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 432 45556666666665 5666666666666665433 5556666666665 55666666666666
Q ss_pred hhcCCCchHHHHHHHHHHhhc-C-----ChhhHHHHHHHHhhcC
Q 046638 259 LDLWPNDPAIYVLLSNVSKAT-D-----CWDDAGDIRTLMYNRG 296 (306)
Q Consensus 259 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 296 (306)
.+. |.++..+..|+.+|... | ++++|...|++..+.|
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 665 33445666666666543 2 5666666666665554
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.34 E-value=1e-10 Score=87.60 Aligned_cols=181 Identities=9% Similarity=0.017 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 046638 30 WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY-FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA 108 (306)
Q Consensus 30 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (306)
+......+...|++++|+..|++..+.. |+. ..|.. .. ... .........+.+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-~~----~~~--------------~~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW-TN----VDK--------------NSEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH-HH----SCT--------------TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH-hh----hcc--------------hhhhhHHHHHHHHHHHH
Confidence 3344556677888888888888877743 432 22222 00 000 00111223344666677
Q ss_pred hcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCh--HHHH
Q 046638 109 ICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI--DKGL 183 (306)
Q Consensus 109 ~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~--~~a~ 183 (306)
+.|++++|+..|++..+ | +...+..+..++...|++++|+..|++..+..+. +..++..+..++...|+. +.+.
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHH
Confidence 77777777777776653 2 4556666777777777777777777777665433 455666666666554432 3344
Q ss_pred HHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CChhhHH
Q 046638 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPSVYK 236 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ 236 (306)
..++.... . +|....+.....++...|++++|...|++.... |+.....
T Consensus 145 ~~~~~~~~---~-~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 194 (208)
T 3urz_A 145 TDYKKLSS---P-TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194 (208)
T ss_dssp HHHC---C---C-CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHH
T ss_pred HHHHHHhC---C-CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHH
Confidence 44444321 1 112223444555566667777777777777653 6554333
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.33 E-value=1.3e-11 Score=87.42 Aligned_cols=139 Identities=13% Similarity=0.025 Sum_probs=66.1
Q ss_pred HhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHH
Q 046638 71 AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREA 147 (306)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 147 (306)
.+...|++++|+..++......+ .+...+..+..+|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 33444555555555555443321 1223334455555555555555555555442 2344555555555555555555
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHH-HHHHHhcCCCCCCcHhHHHHHHHHHhccC
Q 046638 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY-FYLMRNDASLEPPRAEHYTAIVGLLGRAG 214 (306)
Q Consensus 148 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (306)
+..|++..+..+. +...+..+...+.+.|++++|.+. +++..+.. |.++.+|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHhC
Confidence 5555555544332 344455555555555555444333 34444322 334445554444444444
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.32 E-value=1.5e-10 Score=91.13 Aligned_cols=163 Identities=12% Similarity=-0.015 Sum_probs=128.2
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 046638 94 DSNVFVQNRLVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170 (306)
Q Consensus 94 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 170 (306)
+.+...+..+...+...|++++|...|++..+ | +...+..+...+.+.|++++|...++++....+. .........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHHH
Confidence 44667777888889999999999999998864 4 5567888889999999999999999988765442 222233333
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCC---hhhHHHHHHHHHhcC
Q 046638 171 SACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPG---PSVYKALLSACQVHG 246 (306)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~---~~~~~~l~~~~~~~~ 246 (306)
..+...++.+.|.+.+++..... |.+...+..+...+...|++++|...|+++.. .|+ ...+..++..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 44667788888888888887755 56888899999999999999999999998876 344 456888888999999
Q ss_pred CHHHHHHHHHHHhh
Q 046638 247 NREIAVRSAKRVLD 260 (306)
Q Consensus 247 ~~~~a~~~~~~~~~ 260 (306)
+.++|...|++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999888764
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.32 E-value=1.1e-10 Score=84.86 Aligned_cols=156 Identities=12% Similarity=-0.001 Sum_probs=104.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHc
Q 046638 100 QNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA-CCH 175 (306)
Q Consensus 100 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~ 175 (306)
+..+...+...|++++|...|++..+ .+...+..+..++...|++++|+..+++.....+ +.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 34456667777777777777777764 3456677777777777888888777777655433 32222221111 122
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC---hhhHHHHHHHHHhcCCHHHH
Q 046638 176 AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG---PSVYKALLSACQVHGNREIA 251 (306)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~---~~~~~~l~~~~~~~~~~~~a 251 (306)
.++...|...+++..+.. |.++..+..+..++...|++++|...|+++... |+ ...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN---PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 223334677777776644 446778888888888888888888888887763 43 34677788888888888888
Q ss_pred HHHHHHHhh
Q 046638 252 VRSAKRVLD 260 (306)
Q Consensus 252 ~~~~~~~~~ 260 (306)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.31 E-value=4.1e-11 Score=95.39 Aligned_cols=196 Identities=10% Similarity=-0.046 Sum_probs=141.8
Q ss_pred ccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 046638 75 ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI-CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153 (306)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 153 (306)
.|++++|.+++++..+.... . +.+ .+++++|...|.+. +..|...|++++|...|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 46667777777766654221 1 111 46677777766553 4567777888888888877
Q ss_pred HHhc----CCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC--CC-CcHhHHHHHHHHHhccCChHHHHHHHHH
Q 046638 154 MQKT----EIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL--EP-PRAEHYTAIVGLLGRAGFLNEAESFINS 225 (306)
Q Consensus 154 m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (306)
..+. +-.+ -..+|..+..+|...|++++|...|++..+.... .+ ....++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 6542 1111 1347788889999999999999999886643211 01 124678889999988 999999999998
Q ss_pred hcCC----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc------hHHHHHHHHHHhhcCChhhHHHHHHH
Q 046638 226 MSRN----PG----PSVYKALLSACQVHGNREIAVRSAKRVLDLWPND------PAIYVLLSNVSKATDCWDDAGDIRTL 291 (306)
Q Consensus 226 ~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 291 (306)
...- .+ ..++..+...+...|++++|+..|+++++..|.+ ...+..++.++...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8651 11 3567888999999999999999999999864432 23677788888999999999999998
Q ss_pred Hh
Q 046638 292 MY 293 (306)
Q Consensus 292 m~ 293 (306)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.29 E-value=2.7e-09 Score=84.30 Aligned_cols=160 Identities=10% Similarity=0.010 Sum_probs=121.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-CccHH----HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCc----HhHH
Q 046638 133 SLLLGCAHHGYSREAVQLFEQMQKTEI-KPDGT----TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR----AEHY 203 (306)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 203 (306)
..+..+...|++++|...+++..+... .|+.. .+..+...+...|++++|+..+++..+.....+ + ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~-~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-DVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS-CTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc-cHHHHHHHH
Confidence 346678889999999999999876432 23321 333567777788899999999999887332211 2 3368
Q ss_pred HHHHHHHhccCChHHHHHHHHHhcC-------C-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CchHH
Q 046638 204 TAIVGLLGRAGFLNEAESFINSMSR-------N-P-GPSVYKALLSACQVHGNREIAVRSAKRVLDLWP------NDPAI 268 (306)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~-------~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~ 268 (306)
+.++..|...|++++|...|+++.. . + ...++..+...|...|++++|...++++++..+ .-..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 8999999999999999999998873 1 1 123678888999999999999999999998432 22678
Q ss_pred HHHHHHHHhhcCC-hhhHHHHHHHHh
Q 046638 269 YVLLSNVSKATDC-WDDAGDIRTLMY 293 (306)
Q Consensus 269 ~~~l~~~~~~~g~-~~~a~~~~~~m~ 293 (306)
+..++.++.+.|+ +++|.+.+++..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999995 699999888765
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.28 E-value=1.4e-10 Score=79.31 Aligned_cols=114 Identities=13% Similarity=0.025 Sum_probs=91.9
Q ss_pred CCccH-HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhH
Q 046638 159 IKPDG-TTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVY 235 (306)
Q Consensus 159 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 235 (306)
+.|+. ..+......+.+.|++++|++.|++..+.. |.+..+|..+..+|.+.|++++|+..|++... +.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44543 456777888888899999998888887654 45788888888899999999999998888765 2456678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 046638 236 KALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNV 275 (306)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 275 (306)
..+..++...|++++|++.|+++++++|+++..+..|..+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 8888889999999999999999999999888887777654
No 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.27 E-value=3.7e-11 Score=84.76 Aligned_cols=96 Identities=14% Similarity=0.010 Sum_probs=54.1
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 276 (306)
+...+..+...+.+.|++++|...|++... . .++..|..+..++...|++++|+..|+++++..|+++..+..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 444555555555555555555555555543 1 23444555555555556666666666666555555555555566666
Q ss_pred hhcCChhhHHHHHHHHhh
Q 046638 277 KATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~ 294 (306)
...|++++|+..|++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666655555544
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.27 E-value=8.7e-10 Score=82.62 Aligned_cols=129 Identities=9% Similarity=-0.087 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC
Q 046638 99 VQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178 (306)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 178 (306)
.+..+...+...|++++|+..|++...++...|..+..++...|++++|+..|++.....+. +...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHccc
Confidence 45566777888888888888888888778888888888888888888888888888776533 56677788888888888
Q ss_pred hHHHHHHHHHHHhcCCCC-------------CCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 179 IDKGLQYFYLMRNDASLE-------------PPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
+++|.+.|++..+..... |....++..++.+|...|++++|.+.|++...
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 888888888877643211 11225666667777777777777777776665
No 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.27 E-value=4.3e-11 Score=93.98 Aligned_cols=192 Identities=8% Similarity=-0.015 Sum_probs=107.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 046638 96 NVFVQNRLVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172 (306)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 172 (306)
+...+..++..+.+.|++++|+..|++..+ | +...|..+..+|.+.|++++|...+++..+..+. +...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344555566666666666666666666542 3 4456666666666777777777777766654332 45556666667
Q ss_pred HHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 046638 173 CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252 (306)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (306)
+...|++++|...|++..+.... +...+...+....+..+...... ........+......+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE---QRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH---TTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc---chhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 77777777777777665543211 10001111111111111111111 1111112333333333 222 368888888
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHhhc-CChhhHHHHHHHHhh
Q 046638 253 RSAKRVLDLWPNDPAIYVLLSNVSKAT-DCWDDAGDIRTLMYN 294 (306)
Q Consensus 253 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 294 (306)
+.++++++..|++......+...+.+. +.+++|.++|++..+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888888888776666776666665 667888888887765
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.26 E-value=7.8e-10 Score=87.39 Aligned_cols=164 Identities=9% Similarity=-0.015 Sum_probs=114.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-----HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC-Cc--Hh
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG-----TTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP-PR--AE 201 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~--~~ 201 (306)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+...... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455666777888888888888877664332111 2234455667778888888888887764321111 11 44
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhcC----CCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ch
Q 046638 202 HYTAIVGLLGRAGFLNEAESFINSMSR----NPG-----PSVYKALLSACQVHGNREIAVRSAKRVLDLWPN------DP 266 (306)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 266 (306)
+++.++..|...|++++|...|++... .|+ ..++..+...|...|++++|...++++++..++ ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 778888888888999888888887762 122 146777888888999999999999988874321 25
Q ss_pred HHHHHHHHHHhhcCChhhH-HHHHHHHh
Q 046638 267 AIYVLLSNVSKATDCWDDA-GDIRTLMY 293 (306)
Q Consensus 267 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 293 (306)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788889999999999888 67676553
No 119
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=4e-09 Score=92.11 Aligned_cols=233 Identities=9% Similarity=0.007 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHH-HHHHHHHHcCCCccHHH
Q 046638 28 ISWNAIIAGFCNLG-------SGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK-QMHALIFKIGYDSNVFV 99 (306)
Q Consensus 28 ~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 99 (306)
..|...+..--..+ ..+.+..+|++.+.. .+-....|...+..+...|+.++|. .+|++..... +.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHH
Confidence 35666665433332 134567788888876 3456778888888888889999997 9999999764 456777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCc-------------CC------------chhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 100 QNRLVFMYAICGAINDANKVFSSMDE-------------RD------------LVSWNSLLLGCAHHGYSREAVQLFEQM 154 (306)
Q Consensus 100 ~~~l~~~~~~~g~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m 154 (306)
|..++...-+.|++++|.++|+++.+ |+ ...|...+....+.|+.+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88889999999999999999998864 21 235788888888889999999999999
Q ss_pred Hhc-CCCccHHHHHHHHHHHHcc-CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC
Q 046638 155 QKT-EIKPDGTTFLVVLSACCHA-GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG 231 (306)
Q Consensus 155 ~~~-~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 231 (306)
.+. +. +....|...+..-.+. ++.+.|.++|+...+.. |.++..+...++.....|+.+.|..+|++.... |+
T Consensus 461 ~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~---p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 461 RRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF---ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 876 21 1223343333222333 45899999999988764 346777888888888899999999999999875 42
Q ss_pred ----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 046638 232 ----PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 232 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 266 (306)
...|...+..-...|+.+.+..+.+++.+..|+++
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 34677788878889999999999999999999764
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.22 E-value=5.6e-10 Score=79.97 Aligned_cols=127 Identities=11% Similarity=0.006 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHH
Q 046638 164 TTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSA 241 (306)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~ 241 (306)
..+..+...+...|++++|...|++..+.. |.+..++..++.++...|++++|...+++... ..+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 445666777777888888888887777644 34677788888888888888888888887765 2345677778888
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHH--HhhcCChhhHHHHHHHHh
Q 046638 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNV--SKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 293 (306)
+...|++++|...++++++..|.++..+..+..+ +...|++++|++.++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888999999999999988888877777444444 777888888888887664
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.21 E-value=1.9e-10 Score=78.69 Aligned_cols=100 Identities=12% Similarity=0.006 Sum_probs=90.9
Q ss_pred CCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHH
Q 046638 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLS 273 (306)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 273 (306)
.|.....+...+..|.+.|++++|++.|++... +.++..|..+..++...|++++|+..++++++++|+++..|..++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 344567788899999999999999999999875 346778899999999999999999999999999999999999999
Q ss_pred HHHhhcCChhhHHHHHHHHhhc
Q 046638 274 NVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
.++...|++++|++.|++..+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998774
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.20 E-value=7e-10 Score=83.12 Aligned_cols=130 Identities=10% Similarity=-0.059 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHH
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (306)
..+..+...+...|++++|...|++. +.|+...+..+..++...|++++|...+++..+.. |.+..++..++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHH
Confidence 44667788889999999999999876 36688889999999999999999999999988754 457888999999
Q ss_pred HHhccCChHHHHHHHHHhcCC-C-Ch----------------hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 046638 209 LLGRAGFLNEAESFINSMSRN-P-GP----------------SVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~-~-~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
+|...|++++|.+.|++.... | +. ..+..+...+...|++++|...|+++++..|++
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999988752 2 22 567888888999999999999999999999976
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.18 E-value=6.9e-08 Score=76.97 Aligned_cols=238 Identities=9% Similarity=0.054 Sum_probs=165.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc-chhhHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 046638 30 WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS-GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA 108 (306)
Q Consensus 30 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (306)
++.+-......+..++|++++++++..+. -+..+|+.--.++...+ ++++++.+++.+++..++ +..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 33333444556667899999999998642 34456677666666777 599999999999998765 7888888888887
Q ss_pred hc-C-ChHHHHHHHHhcCcC---CchhHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCccHHHHHHHHHHHHc
Q 046638 109 IC-G-AINDANKVFSSMDER---DLVSWNSLLLGCAHHGYSR--------EAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175 (306)
Q Consensus 109 ~~-g-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 175 (306)
+. + ++++++++++++.+. +..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 77 7 899999999999864 4556766666666666665 899999999888765 77788877777777
Q ss_pred cCC-------hHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCCh--------------------HHHHHHHHHhcC
Q 046638 176 AGF-------IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL--------------------NEAESFINSMSR 228 (306)
Q Consensus 176 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~ 228 (306)
.++ ++++++.+++..... |.+...|+.+-..+.+.|+. ....++..++..
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~---P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI---PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred ccccccchHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 776 678888888877654 45788888777777766654 233333333332
Q ss_pred C--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHh-hcCCCchHHHHHHH
Q 046638 229 N--------PGPSVYKALLSACQVHGNREIAVRSAKRVL-DLWPNDPAIYVLLS 273 (306)
Q Consensus 229 ~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 273 (306)
. +++..+..++..|...|+.++|.++++.+. +.+|-....+...+
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 1 344556667777777777778888887776 35665544444443
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.18 E-value=1.3e-09 Score=73.88 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHH
Q 046638 163 GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLS 240 (306)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~ 240 (306)
...+..+...+...|++++|.+.++++.+.. |.+..++..++..+...|++++|...++++.. ..+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4566777778888888888888888877654 34677788888888888888888888888765 245667778888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcC
Q 046638 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD 280 (306)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 280 (306)
.+...|++++|...++++++..|+++..+..++.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8889999999999999999988988888888877776543
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.17 E-value=1.2e-10 Score=82.12 Aligned_cols=114 Identities=9% Similarity=-0.012 Sum_probs=80.5
Q ss_pred HHHHHHhcCCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 150 LFEQMQKTEIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 150 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
.|+++... .| +...+..+...+...|++++|...|++..... |.+...|..+..+|...|++++|...|++...
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44555433 33 34456667777788888888888888777644 44777777888888888888888888877764
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHH
Q 046638 229 --NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAI 268 (306)
Q Consensus 229 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 268 (306)
+.++..+..+..++...|++++|...|+++++..|+++..
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 2345667777777888888888888888888877765543
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.17 E-value=1.1e-09 Score=75.30 Aligned_cols=118 Identities=11% Similarity=-0.039 Sum_probs=93.8
Q ss_pred ccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHH
Q 046638 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKAL 238 (306)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l 238 (306)
.+...+..+...+...|++++|...+++..+.. |.+..++..++.++...|++++|...+++... ..+...+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN---PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 345667778888888888888888888877643 44777888888888888888888888888765 2445677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCC
Q 046638 239 LSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDC 281 (306)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 281 (306)
...+...|++++|...++++++..|.+...+..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888899999999999999999888888888888888776653
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.17 E-value=1.1e-09 Score=74.81 Aligned_cols=118 Identities=11% Similarity=0.014 Sum_probs=96.0
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHH
Q 046638 162 DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALL 239 (306)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~ 239 (306)
+...+..+...+...|+++.|...+++..... |.+...+..++..+...|++++|...+++... . .+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN---PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 34566777778888888888888888877654 34677888888888888899988888888765 2 3466778888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCCh
Q 046638 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCW 282 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 282 (306)
..+...|++++|...++++++..|+++..+..++.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999998888999999998888775
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.14 E-value=3.2e-10 Score=87.46 Aligned_cols=193 Identities=11% Similarity=-0.034 Sum_probs=123.1
Q ss_pred ccchhhHHHHHHHHHHcCCCccHHHHHHH-------HHHHHhcCChHHHHHHHHhcCc--C-------C-----------
Q 046638 75 ISGFKEGKQMHALIFKIGYDSNVFVQNRL-------VFMYAICGAINDANKVFSSMDE--R-------D----------- 127 (306)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~--~-------~----------- 127 (306)
.++...|.+.|.++.+..+. ....|..+ ...+.+.++..+++..++...+ | +
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 45566666666666665433 44555555 3445555555555555554443 1 1
Q ss_pred ----chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCc--Hh
Q 046638 128 ----LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR--AE 201 (306)
Q Consensus 128 ----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~ 201 (306)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... +|. ..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d~~~~~~ 172 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP---DKFLAGA 172 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS---CHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---CcccHHH
Confidence 1123445667778888888888888776544 333355556667788888888888887554311 111 23
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhcCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 046638 202 HYTAIVGLLGRAGFLNEAESFINSMSRNPG-----PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSN 274 (306)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 274 (306)
.+..+..++...|++++|+..|++....|. .........++.+.|+.++|...|+++...+|+ +.....|..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 677778888888888888888888865432 224455666788888888888888888888887 666665543
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.14 E-value=1.2e-09 Score=88.06 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=76.3
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHh
Q 046638 200 AEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSK 277 (306)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 277 (306)
..+|..+..+|.+.|++++|+..+++... ..+...|..+..+|...|++++|...|+++++..|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46788888888888888888888888765 2456678888888888999999999999999999988888888999998
Q ss_pred hcCChhhH-HHHHHHHh
Q 046638 278 ATDCWDDA-GDIRTLMY 293 (306)
Q Consensus 278 ~~g~~~~a-~~~~~~m~ 293 (306)
+.|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888 44555553
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.13 E-value=4.8e-10 Score=81.50 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=91.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHH-HhccCCh
Q 046638 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL-LGRAGFL 216 (306)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 216 (306)
+...|++++|...+++..+..+. +...+..+..++...|++++|...|++..+.. |.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCCc
Confidence 34567788888888887766543 56677788888888888888888888877654 3466777777777 7778887
Q ss_pred --HHHHHHHHHhcC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchH
Q 046638 217 --NEAESFINSMSR-NP-GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267 (306)
Q Consensus 217 --~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 267 (306)
++|...+++... .| +...+..+...+...|++++|...|+++++..|+++.
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 888888887765 23 4566777777788888888888888888888887643
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.13 E-value=8.2e-10 Score=81.96 Aligned_cols=148 Identities=8% Similarity=-0.021 Sum_probs=74.9
Q ss_pred hhcCChHHHHh---hhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChhhHHHHHHHhccccch
Q 046638 7 SRCDSSLDFQN---VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA----GID-IDYFTITSIVGAIGVISGF 78 (306)
Q Consensus 7 ~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~ 78 (306)
...|++++|.+ .+..-+......++.+...+...|++++|+..+++..+. +.. ....++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35677777777 444333345566777777777777777777777766542 111 1223444555555666666
Q ss_pred hhHHHHHHHHHHc----CCCc--cHHHHHHHHHHHHhcCChHHHHHHHHhcCc-----CC----chhHHHHHHHHHhcCC
Q 046638 79 KEGKQMHALIFKI----GYDS--NVFVQNRLVFMYAICGAINDANKVFSSMDE-----RD----LVSWNSLLLGCAHHGY 143 (306)
Q Consensus 79 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~ 143 (306)
++|...+++..+. +..+ ....+..+..++...|++++|...+++..+ .+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666655443 1011 123445555555555555555555554431 11 1123444444445555
Q ss_pred HHHHHHHHHHH
Q 046638 144 SREAVQLFEQM 154 (306)
Q Consensus 144 ~~~a~~~~~~m 154 (306)
+++|...+++.
T Consensus 163 ~~~A~~~~~~a 173 (203)
T 3gw4_A 163 LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 132
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.12 E-value=1e-10 Score=86.87 Aligned_cols=96 Identities=13% Similarity=-0.003 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh
Q 046638 201 EHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278 (306)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 278 (306)
.++..+..+|...|++++|+..+++... ..+...+..+..++...|++++|...|+++++..|+++.++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5677888888888999999988888765 24566788888889999999999999999999999999999999999999
Q ss_pred cCChhhHH-HHHHHHhhcC
Q 046638 279 TDCWDDAG-DIRTLMYNRG 296 (306)
Q Consensus 279 ~g~~~~a~-~~~~~m~~~~ 296 (306)
.++.+++. ..+..|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888887 5566665443
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.12 E-value=9.1e-09 Score=81.21 Aligned_cols=165 Identities=14% Similarity=-0.036 Sum_probs=111.2
Q ss_pred hhHHHHHHHhccccchhhHHHHHHHHHHcCCCcc-----HHHHHHHHHHHHhcCChHHHHHHHHhcCc-----CC----c
Q 046638 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-----VFVQNRLVFMYAICGAINDANKVFSSMDE-----RD----L 128 (306)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~ 128 (306)
..+...+..+...|++++|.+.+++.++...... ...+..++..+...|++++|+..+++..+ .+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445556667777888888888877776543221 12344566677778888888888877642 11 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh---cC-CCc--cHHHHHHHHHHHHccCChHHHHHHHHHHHhcC---CCCCCc
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQMQK---TE-IKP--DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA---SLEPPR 199 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 199 (306)
.+++.+...|...|++++|...|++..+ .. ..+ ...++..+..+|...|++++|...+++..+.. ......
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3677888888888888888888888762 21 111 12477788888888888888888887765421 111112
Q ss_pred HhHHHHHHHHHhccCChHHH-HHHHHHhc
Q 046638 200 AEHYTAIVGLLGRAGFLNEA-ESFINSMS 227 (306)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 227 (306)
..+|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66788888888888888888 66676654
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.11 E-value=3.1e-10 Score=80.00 Aligned_cols=96 Identities=11% Similarity=0.038 Sum_probs=51.3
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 276 (306)
+...+..+...+...|++++|...|++... ..+...|..+..++...|++++|+..|++++...|+++..+..++.++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 444455555555555555555555555443 123444555555555555555555555555555555555555555555
Q ss_pred hhcCChhhHHHHHHHHhh
Q 046638 277 KATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~ 294 (306)
...|++++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.11 E-value=3e-09 Score=84.00 Aligned_cols=167 Identities=5% Similarity=-0.000 Sum_probs=128.0
Q ss_pred cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChh----hHHHHHHHhccccchhhHHHHHHHHHHcCCC-cc--
Q 046638 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DIDYF----TITSIVGAIGVISGFKEGKQMHALIFKIGYD-SN-- 96 (306)
Q Consensus 25 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-- 96 (306)
.....+...+..+...|++++|...+++..+... .|+.. .+..+...+...+++++|...++++++.... ++
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 3466777778889999999999999999887432 22221 2335666777888999999999999984322 22
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHhcCc------C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC
Q 046638 97 --VFVQNRLVFMYAICGAINDANKVFSSMDE------R----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKT----EIK 160 (306)
Q Consensus 97 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~ 160 (306)
..+++.++.+|...|++++|+..|+++.+ . ...++..+...|.+.|++++|...+++..+. +..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 34789999999999999999999998873 1 1247888999999999999999999987642 222
Q ss_pred c-cHHHHHHHHHHHHccCC-hHHHHHHHHHHHh
Q 046638 161 P-DGTTFLVVLSACCHAGF-IDKGLQYFYLMRN 191 (306)
Q Consensus 161 p-~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 191 (306)
+ -..+|..+..++.+.|+ +++|.+.+++...
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2 25678889999999995 6999998887654
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.11 E-value=2.1e-09 Score=75.77 Aligned_cols=101 Identities=6% Similarity=-0.077 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHH
Q 046638 163 GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLS 240 (306)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~ 240 (306)
...+..+...+.+.|++++|...|+++.... |.++..|..+..+|...|++++|+..|++... +.++..|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 3456677777888888888888888877654 45777888888888888888888888888765 234567777888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCch
Q 046638 241 ACQVHGNREIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~p~~~ 266 (306)
+|...|++++|...|+++++..|+++
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888888888888653
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.11 E-value=1.5e-09 Score=72.01 Aligned_cols=101 Identities=12% Similarity=-0.019 Sum_probs=85.3
Q ss_pred CCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--chHHHHHH
Q 046638 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN--DPAIYVLL 272 (306)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l 272 (306)
|.+...+..++..+...|++++|...|++... ..+...+..+...+...|++++|...++++++..|. +...+..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 34566778888888899999999999888765 245667888888899999999999999999999998 88999999
Q ss_pred HHHHhhc-CChhhHHHHHHHHhhcCC
Q 046638 273 SNVSKAT-DCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 273 ~~~~~~~-g~~~~a~~~~~~m~~~~~ 297 (306)
+.++... |++++|.+.+++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999 999999999988877544
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.09 E-value=1.1e-09 Score=76.47 Aligned_cols=103 Identities=13% Similarity=-0.028 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHH
Q 046638 164 TTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSA 241 (306)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~ 241 (306)
..+..+...+.+.|++++|...|+++.... |.+...|..+..+|...|++++|...|++... +.++..+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 345556667777777777777777776544 34667777777777777777777777777654 2344556667777
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCchHHH
Q 046638 242 CQVHGNREIAVRSAKRVLDLWPNDPAIY 269 (306)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 269 (306)
+...|++++|...|+++++..|+++...
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 7777777777777777777776655443
No 139
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.08 E-value=1.5e-08 Score=88.49 Aligned_cols=216 Identities=6% Similarity=-0.120 Sum_probs=168.0
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH-HHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN-KVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQM 154 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 154 (306)
+.+..+|++++...+ -+...|...+..+...|+.++|. ++|++... | +...|...+...-+.|++++|.++|+++
T Consensus 326 ~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345677888887743 47888999999999999999997 99998874 4 4456778888889999999999999998
Q ss_pred HhcCC---------Cc------------cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc
Q 046638 155 QKTEI---------KP------------DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213 (306)
Q Consensus 155 ~~~~~---------~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (306)
..... .| ....|...+....+.|+.+.|..+|.+..+... +.....|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~--~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK--LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG--GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHh
Confidence 76410 13 123577778888889999999999999987511 12344555444444444
Q ss_pred -CChHHHHHHHHHhcCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---chHHHHHHHHHHhhcCChhhHHH
Q 046638 214 -GFLNEAESFINSMSRN-P-GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN---DPAIYVLLSNVSKATDCWDDAGD 287 (306)
Q Consensus 214 -~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~ 287 (306)
++.+.|..+|+...+. | +...|...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4599999999998874 4 4555677888888899999999999999998773 55688888999999999999999
Q ss_pred HHHHHhhcCC
Q 046638 288 IRTLMYNRGI 297 (306)
Q Consensus 288 ~~~~m~~~~~ 297 (306)
+.+++.+...
T Consensus 563 v~~R~~~~~P 572 (679)
T 4e6h_A 563 LEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHhCC
Confidence 9999987543
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.07 E-value=2e-09 Score=73.46 Aligned_cols=111 Identities=14% Similarity=-0.009 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHH
Q 046638 163 GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLS 240 (306)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~ 240 (306)
...+......+.+.|++++|...|++..+.. |.+...+..+..+|.+.|++++|+..+++... . .+...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3455666667777777777777777766543 34666677777777777777777777776654 2 33455666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhcC------CCchHHHHHHHHHH
Q 046638 241 ACQVHGNREIAVRSAKRVLDLW------PNDPAIYVLLSNVS 276 (306)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 276 (306)
++...|++++|...|+++++.. |+++.....+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 6777777777777777777766 66655555555443
No 141
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.07 E-value=2.9e-07 Score=77.92 Aligned_cols=273 Identities=8% Similarity=-0.053 Sum_probs=146.6
Q ss_pred CChHHHHhhhhhcc--CcchHHHHHHHHHHHhcCC-hHHHHHHHHHHHHc-CCC-CChhhHHHHHHHhc----cccchhh
Q 046638 10 DSSLDFQNVYSSVR--TRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQA-GID-IDYFTITSIVGAIG----VISGFKE 80 (306)
Q Consensus 10 g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~----~~~~~~~ 80 (306)
|+++.+..+|++.. .|+...|...+....+.+. .+....+|+..+.. |.. .+...|...+..+. ..++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 78889999998864 3788899988887766663 45677788877664 432 35567777776554 3567888
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHH--------------------------------------------HHh--cCC--
Q 046638 81 GKQMHALIFKIGYDSNVFVQNRLVFM--------------------------------------------YAI--CGA-- 112 (306)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------------------~~~--~g~-- 112 (306)
+.++|+++++..+..-...|...... |.. .++
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 99999998874221111222211110 000 011
Q ss_pred -------hHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHH
Q 046638 113 -------INDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182 (306)
Q Consensus 113 -------~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (306)
.+.+..+|+++.. .+...|...+..+.+.|+.++|..+|++.... |....+.. .|....+.++.
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~ 261 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV 261 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH
T ss_pred cCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH
Confidence 1234445555543 23456666677777778888888888887766 22221111 11111111111
Q ss_pred HHHHHHHHhcCC----------CCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCC--hhhHHHHHHHHHh-cCCHH
Q 046638 183 LQYFYLMRNDAS----------LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPG--PSVYKALLSACQV-HGNRE 249 (306)
Q Consensus 183 ~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~l~~~~~~-~~~~~ 249 (306)
++.+.+... ..+....+|...+....+.+..+.|..+|++. ..|. ...|......-.. .++.+
T Consensus 262 ---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 262 ---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp ---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSH
T ss_pred ---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChH
Confidence 111111100 00001234455555555566677777777777 3332 2223222222122 23577
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHH
Q 046638 250 IAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLM 292 (306)
Q Consensus 250 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 292 (306)
.|..+|+.+++..|+++..+...+....+.|+.+.|+.+|+++
T Consensus 338 ~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 338 TPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777766666655555566556666666666666554
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.07 E-value=3e-07 Score=72.93 Aligned_cols=243 Identities=9% Similarity=0.029 Sum_probs=161.2
Q ss_pred chHHHHHHHHH---HHhcCChH-HHHHHHHHHHHcCCCCCh-hhHHHHHHHhccccc----------hhhHHHHHHHHHH
Q 046638 26 NQISWNAIIAG---FCNLGSGE-QALKCFSEMRQAGIDIDY-FTITSIVGAIGVISG----------FKEGKQMHALIFK 90 (306)
Q Consensus 26 ~~~~~~~li~~---~~~~~~~~-~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~ 90 (306)
....|..+... ..+.|.++ +|++++..++..+ |+. .+|+.--.++...+. +++++.+++.++.
T Consensus 25 ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~ 102 (331)
T 3dss_A 25 KLKLYQSATQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR 102 (331)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence 34455554433 34556654 8999999998853 554 445544333333333 6788899999998
Q ss_pred cCCCccHHHHHHHHHHHHhcCC--hHHHHHHHHhcCc---CCchhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCccHH
Q 046638 91 IGYDSNVFVQNRLVFMYAICGA--INDANKVFSSMDE---RDLVSWNSLLLGCAHHGY-SREAVQLFEQMQKTEIKPDGT 164 (306)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~ 164 (306)
..++ +..+|+.-..++.+.|+ +++++.+++++.+ .|..+|+.-...+...|. ++++++.+.++.+..+. |..
T Consensus 103 ~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~S 180 (331)
T 3dss_A 103 VNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYS 180 (331)
T ss_dssp HCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHH
T ss_pred hCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHH
Confidence 8754 78888888888888884 8899999998885 466678777777788888 58999999999887765 666
Q ss_pred HHHHHHHHHHcc--------------CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc-----------CChHHH
Q 046638 165 TFLVVLSACCHA--------------GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA-----------GFLNEA 219 (306)
Q Consensus 165 ~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a 219 (306)
.|+.....+.+. +.++++++.++...... |.+..+|+-+-..+.+. +.++++
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~---P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~e 257 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSE 257 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccCccccchHHHHHHHHH
Confidence 776665555544 45677888888877654 45777777555555544 345667
Q ss_pred HHHHHHhcC-CCChhhHHHHHHH-----HHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 046638 220 ESFINSMSR-NPGPSVYKALLSA-----CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276 (306)
Q Consensus 220 ~~~~~~~~~-~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 276 (306)
++.++++.+ .|+. .|..+..+ ....|..+++...+.++++++|....-|.-+...+
T Consensus 258 l~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 258 LESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 777776665 3443 23322111 11345666777777777777777666665554443
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.07 E-value=4.5e-09 Score=81.09 Aligned_cols=182 Identities=11% Similarity=-0.019 Sum_probs=140.4
Q ss_pred hcCChHHHHHHHHhcCc--C-CchhHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCcc----------------
Q 046638 109 ICGAINDANKVFSSMDE--R-DLVSWNSL-------LLGCAHHGYSREAVQLFEQMQKTEIKPD---------------- 162 (306)
Q Consensus 109 ~~g~~~~a~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------- 162 (306)
..++...|.+.|.++.+ | ....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999985 3 34678777 4566666666666666665543 2221
Q ss_pred ------HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCCh----
Q 046638 163 ------GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGP---- 232 (306)
Q Consensus 163 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---- 232 (306)
..........+...|++++|.+.|+.+...+ |.+. ....+...+.+.+++++|+..|+.....|+.
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG---SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 1223345677889999999999998887543 3244 7777788999999999999999977765533
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CC-chHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 233 SVYKALLSACQVHGNREIAVRSAKRVLDLW--PN-DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
..+..+..++...|++++|+..|+++.... |. .+......+.++.+.|+.++|...|+++...+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 357778889999999999999999998643 65 55688999999999999999999999998754
No 144
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.06 E-value=6.8e-08 Score=77.01 Aligned_cols=216 Identities=10% Similarity=0.001 Sum_probs=161.9
Q ss_pred cccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHhcCc---CCchhHHHHHHHHHhc-C-CHHHH
Q 046638 74 VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG-AINDANKVFSSMDE---RDLVSWNSLLLGCAHH-G-YSREA 147 (306)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-~-~~~~a 147 (306)
+.+..++|++++++++..++. +..+|+.-..++...| ++++++.+++.+.. .+..+|+.-..++.+. + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 344557899999999998765 7888998888888888 59999999999885 3556788877777776 7 89999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHccCChH--------HHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCC----
Q 046638 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID--------KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF---- 215 (306)
Q Consensus 148 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 215 (306)
+++++++.+..++ +...|+.-.-.+.+.|.++ ++++.++++.+.. |.+..+|+.....+.+.++
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccccc
Confidence 9999999887655 6777776666666666666 8999999988765 4588899999999888886
Q ss_pred ---hHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHhhcC------CC
Q 046638 216 ---LNEAESFINSMSR-N-PGPSVYKALLSACQVHGNR--------------------EIAVRSAKRVLDLW------PN 264 (306)
Q Consensus 216 ---~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~ 264 (306)
++++++.+++... . .|...|+.+-..+.+.|+. ........++.... +.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 6888888887765 3 4556677666666665553 22333333333322 45
Q ss_pred chHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 265 DPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 265 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
++.....|+..|...|+.++|.++++.+.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 778889999999999999999999999863
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.05 E-value=2.6e-09 Score=77.54 Aligned_cols=115 Identities=4% Similarity=-0.077 Sum_probs=54.6
Q ss_pred cCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHccCCh--HHHH
Q 046638 110 CGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA-CCHAGFI--DKGL 183 (306)
Q Consensus 110 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~--~~a~ 183 (306)
.|++++|...+++..+ .+...|..+...|...|++++|...|++..+..+. +...+..+..+ +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4455555555554432 23344555555555555555555555555443322 33344444444 4455554 5555
Q ss_pred HHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
..++++.+.. |.+...+..++..|...|++++|...|++...
T Consensus 102 ~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555554432 22444555555555555555555555555443
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.05 E-value=6.6e-09 Score=70.83 Aligned_cols=95 Identities=13% Similarity=-0.025 Sum_probs=60.3
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHh
Q 046638 200 AEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSK 277 (306)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 277 (306)
...+..++..+.+.|++++|...|++... . .+...|..+..++...|++++|+..++++++..|+++..+..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34455666666666666666666666554 2 344556666666666666666666666666666666666666666666
Q ss_pred hcCChhhHHHHHHHHhh
Q 046638 278 ATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 278 ~~g~~~~a~~~~~~m~~ 294 (306)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666666554
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.04 E-value=1.2e-08 Score=68.17 Aligned_cols=110 Identities=17% Similarity=0.055 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHH
Q 046638 163 GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLS 240 (306)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~ 240 (306)
...+..+...+...|++++|...+++..... |.+...+..++..+...|++++|...+++... . .+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3445556666667777777777777666543 33566667777777777777777777776654 2 34556666777
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 046638 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNV 275 (306)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 275 (306)
.+...|++++|...++++++..|+++..+..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777777776666655544
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.03 E-value=1.4e-09 Score=87.68 Aligned_cols=137 Identities=8% Similarity=-0.084 Sum_probs=80.5
Q ss_pred hcCChHHHHhhhhhccC---cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----------------hhHHHH
Q 046638 8 RCDSSLDFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY----------------FTITSI 68 (306)
Q Consensus 8 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l 68 (306)
..+++++|.+.|+.... .+...|..+...+.+.|++++|+..|++.++.. |+. ..|..+
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHH
Confidence 34556667766666432 356678888999999999999999999998864 332 445555
Q ss_pred HHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHH
Q 046638 69 VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSR 145 (306)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 145 (306)
..++.+.|++++|+..++++++..+. +..++..+..+|...|++++|+..|++..+ | +...+..+..++.+.|+.+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554422 444555555555555555555555554442 2 2334444444555555554
Q ss_pred HH
Q 046638 146 EA 147 (306)
Q Consensus 146 ~a 147 (306)
+|
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 149
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.03 E-value=1.8e-08 Score=71.94 Aligned_cols=128 Identities=8% Similarity=-0.077 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHH
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (306)
..+..+...+...|++++|...|++..+..+. +...+..+..++...|++++|...+++..+.. |.+..++..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHHHH
Confidence 34556666677777777777777776665432 45566667777777777777777777766543 346667777777
Q ss_pred HHhccCChHHHHHHHHHhcC-CC-ChhhHH--HHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 209 LLGRAGFLNEAESFINSMSR-NP-GPSVYK--ALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
++...|++++|...|++... .| +...+. ..+..+...|++++|...+.+...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77777777777777777654 23 333332 233336667777888777776654
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.02 E-value=4.5e-09 Score=77.93 Aligned_cols=132 Identities=17% Similarity=0.025 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhc---CCCCC-Cc
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQMQK----TEIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRND---ASLEP-PR 199 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~ 199 (306)
.++..+...+...|++++|...+++... .+..| ...++..+...+...|++++|.+.+++..+. .+..+ ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444555555555555555554433 11111 2234445555555556665555555554332 11000 11
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHhcC----CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 200 AEHYTAIVGLLGRAGFLNEAESFINSMSR----NPGP----SVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
..++..+...+...|++++|...+++... .++. .++..+...+...|++++|.+.++++++
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 23345555555666666666666555442 1111 1234555556666666666666666665
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.02 E-value=3e-07 Score=72.93 Aligned_cols=218 Identities=8% Similarity=-0.023 Sum_probs=161.2
Q ss_pred ccccchh-hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC----------hHHHHHHHHhcCc---CCchhHHHHHHHH
Q 046638 73 GVISGFK-EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA----------INDANKVFSSMDE---RDLVSWNSLLLGC 138 (306)
Q Consensus 73 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~---~~~~~~~~l~~~~ 138 (306)
.+.|.++ +|+.+.+.++..++. +..+|+.--.++...++ +++++.+++.+.. .+..+|+.-..++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455554 799999999998754 66777765555554443 6788888888774 4667888888888
Q ss_pred HhcC--CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC-hHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc--
Q 046638 139 AHHG--YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF-IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA-- 213 (306)
Q Consensus 139 ~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 213 (306)
.+.+ +++++++.++++.+..+. |...|+.-.-.+...|. ++++++.++.+.+.. |.+..+|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~---p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHHSC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhhh
Confidence 8888 489999999999988766 77778777777778888 589999999998765 45888888877777665
Q ss_pred ------------CChHHHHHHHHHhcC-CC-ChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHhhcCCCchHH
Q 046638 214 ------------GFLNEAESFINSMSR-NP-GPSVYKALLSACQVH-----------GNREIAVRSAKRVLDLWPNDPAI 268 (306)
Q Consensus 214 ------------~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~ 268 (306)
+.++++++.+++... .| |...|+-+-..+... +.++++++.++++++..|++.-.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~ 274 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWC 274 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchH
Confidence 457888888888765 34 455565444444443 46789999999999999998655
Q ss_pred HHHHHHH---HhhcCChhhHHHHHHHHhhc
Q 046638 269 YVLLSNV---SKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 269 ~~~l~~~---~~~~g~~~~a~~~~~~m~~~ 295 (306)
+..++.. ....|..++....+.++.+.
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 5444432 23467778888899888763
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.01 E-value=4.1e-09 Score=73.60 Aligned_cols=95 Identities=16% Similarity=0.003 Sum_probs=46.5
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 276 (306)
+...+..+...+.+.|++++|...|++... . .+...|..+..++...|++++|+..|++++...|+++..+..++.++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 333444444445555555555555554433 1 23334444444455555555555555555555555555555555555
Q ss_pred hhcCChhhHHHHHHHHh
Q 046638 277 KATDCWDDAGDIRTLMY 293 (306)
Q Consensus 277 ~~~g~~~~a~~~~~~m~ 293 (306)
...|++++|.+.|++..
T Consensus 97 ~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555554443
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.01 E-value=4.4e-09 Score=82.52 Aligned_cols=192 Identities=5% Similarity=-0.020 Sum_probs=114.1
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (306)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++++++..+. +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567777788888888888888888887753 235667777777888888888888888888876543 5677777888
Q ss_pred HHHhcCChHHHHHHHHhcCc--CC-chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHH
Q 046638 106 MYAICGAINDANKVFSSMDE--RD-LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (306)
+|...|++++|...|++..+ |+ ...+...+....+ ..++... ..........+......+ ..+ ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 88888888888888877664 21 1111111211111 1111111 112222222222222222 222 25777777
Q ss_pred HHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc-CChHHHHHHHHHhcC
Q 046638 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRA-GFLNEAESFINSMSR 228 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 228 (306)
.+.++...+.. |.+......+...+.+. +.+++|.++|.+...
T Consensus 155 ~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGH---EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTT---SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccc---cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77776665432 33444445555555554 567778888876654
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.99 E-value=9.4e-09 Score=71.05 Aligned_cols=100 Identities=9% Similarity=-0.109 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHH
Q 046638 162 DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALL 239 (306)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~ 239 (306)
+...+..+...+...|++++|...|++..... |.+...+..++.++...|++++|...+++... . .+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34445555555555555555555555555433 23445555555555555555555555555543 1 2334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 240 SACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
..+...|++++|...|+++++..|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 5555555555555555555554443
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.99 E-value=2.6e-08 Score=67.23 Aligned_cols=93 Identities=15% Similarity=0.212 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 046638 98 FVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174 (306)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 174 (306)
..+..++..+...|++++|.+.|+++.+ .+...+..+...+...|++++|...++++....+. +..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 3444444444444444444444444432 12334444444455555555555555554443221 3334444445555
Q ss_pred ccCChHHHHHHHHHHHh
Q 046638 175 HAGFIDKGLQYFYLMRN 191 (306)
Q Consensus 175 ~~~~~~~a~~~~~~~~~ 191 (306)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555554443
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.98 E-value=6.5e-09 Score=74.49 Aligned_cols=110 Identities=10% Similarity=-0.023 Sum_probs=94.0
Q ss_pred ccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHH
Q 046638 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKAL 238 (306)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l 238 (306)
.+...+..+...+...|++++|+..|++..+.. |.+...+..+..+|...|++++|+..|++... . .+...|..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 356678888999999999999999999988765 45888999999999999999999999999876 2 456788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHH
Q 046638 239 LSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLS 273 (306)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 273 (306)
...+...|++++|...|+++++..|+++..+....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999998776554443
No 157
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.98 E-value=1e-08 Score=70.29 Aligned_cols=100 Identities=12% Similarity=0.041 Sum_probs=90.7
Q ss_pred CCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 046638 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSN 274 (306)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 274 (306)
|.+...+..++..+...|++++|...|++.... .+...+..+...+...|++++|...++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 457788999999999999999999999998763 466778888999999999999999999999999999999999999
Q ss_pred HHhhcCChhhHHHHHHHHhhcC
Q 046638 275 VSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
++...|++++|.+.+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999887643
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.97 E-value=1.2e-08 Score=73.13 Aligned_cols=98 Identities=10% Similarity=-0.057 Sum_probs=81.9
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHH
Q 046638 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAI 206 (306)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 206 (306)
+...+..+...+.+.|++++|+..|++..+..+. +...+..+..++...|++++|+..|++..+.. |.+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD---PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 3456788888889999999999999998877543 67778888889999999999999998888755 4578888899
Q ss_pred HHHHhccCChHHHHHHHHHhcC
Q 046638 207 VGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
..+|...|++++|...|++...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999988875
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.97 E-value=4.8e-09 Score=71.04 Aligned_cols=94 Identities=12% Similarity=-0.017 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhc
Q 046638 202 HYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKAT 279 (306)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 279 (306)
.+..++..+.+.|++++|...|++... . .+...|..+..++...|++++|+..|+++++..|+++..+..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 355667778888888888888888875 2 35667778888888889999999999999999998888888899999999
Q ss_pred CChhhHHHHHHHHhhc
Q 046638 280 DCWDDAGDIRTLMYNR 295 (306)
Q Consensus 280 g~~~~a~~~~~~m~~~ 295 (306)
|++++|+..+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999988887653
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.96 E-value=3.3e-08 Score=67.33 Aligned_cols=114 Identities=10% Similarity=-0.097 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 046638 98 FVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174 (306)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 174 (306)
..+..++..+...|++++|...|++..+ .+...+..+..++...|++++|...+++.....+. +...+..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 3444444555555555555555554432 23344445555555555555555555555443222 3344445555555
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCC
Q 046638 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215 (306)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (306)
..|++++|...+++..+.. |.+...+..+..++...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD---PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHhc
Confidence 5555555555555554432 2244444555555544443
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.93 E-value=2.3e-08 Score=66.77 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=88.0
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 276 (306)
....+..++..+...|++++|...|++... . .+...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 456788899999999999999999999875 2 46677888899999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhhc
Q 046638 277 KATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~ 295 (306)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988764
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=6.2e-08 Score=67.68 Aligned_cols=114 Identities=13% Similarity=0.000 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCc---HhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHH
Q 046638 162 DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR---AEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYK 236 (306)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~ 236 (306)
+...+..+...+...|++++|...|++..+.. |.+ ...+..+..+|...|++++|...+++... . .+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34556666666777777777777777766533 222 56677777777777777777777777654 2 3455667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh
Q 046638 237 ALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278 (306)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 278 (306)
.+...+...|++++|...|+++++..|+++..+..+.....+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 777778888888888888888888888777766666655443
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.91 E-value=7e-09 Score=70.89 Aligned_cols=105 Identities=13% Similarity=0.058 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC--------hh
Q 046638 163 GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG--------PS 233 (306)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--------~~ 233 (306)
...+..+...+.+.|++++|+..|++..+.. |.+..+|..+..+|...|++++|++.+++...- |+ ..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3456677888888888888888888877644 457778888888888888888888888877641 11 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHH
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVL 271 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 271 (306)
+|..+...+...|++++|++.|++.+...| ++.....
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~ 121 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHH
Confidence 466667777778888888888888887777 4555443
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=3.5e-08 Score=68.98 Aligned_cols=100 Identities=10% Similarity=-0.100 Sum_probs=90.6
Q ss_pred CCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHH
Q 046638 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG----PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVL 271 (306)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 271 (306)
+.+...+..+...+...|++++|...|++.... |+ ...+..+...+...|++++|...++++++..|+++..+..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 347788899999999999999999999998874 66 5678888889999999999999999999999999999999
Q ss_pred HHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 272 LSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 272 l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
++.++...|++++|...|++..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999887643
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.90 E-value=2.8e-08 Score=67.87 Aligned_cols=103 Identities=8% Similarity=-0.039 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCc----HhHHHH
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR----AEHYTA 205 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ 205 (306)
++..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|++.+++..+.....++. ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4555566666666666666666666554332 44555556666666666666666665554422111111 124555
Q ss_pred HHHHHhccCChHHHHHHHHHhcC-CCChh
Q 046638 206 IVGLLGRAGFLNEAESFINSMSR-NPGPS 233 (306)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~ 233 (306)
+..++...|++++|++.|++... .|++.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 55556666666666666655543 24443
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.90 E-value=2.1e-08 Score=69.23 Aligned_cols=95 Identities=16% Similarity=0.057 Sum_probs=51.0
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 276 (306)
+...+..++..+...|++++|...|++... . .+...|..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 444555555555555555555555555443 1 23344555555555555555555555555555555555555555555
Q ss_pred hhcCChhhHHHHHHHHh
Q 046638 277 KATDCWDDAGDIRTLMY 293 (306)
Q Consensus 277 ~~~g~~~~a~~~~~~m~ 293 (306)
...|++++|...|++..
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 55555555555555544
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.90 E-value=1.1e-08 Score=75.84 Aligned_cols=159 Identities=9% Similarity=-0.105 Sum_probs=80.8
Q ss_pred hhhhhcCChHHHHhhhhhccC---cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhh
Q 046638 4 LTYSRCDSSLDFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE 80 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (306)
......|+++.+.+.|+.-.. .....+..+...+...|++++|+..|++..+.. |+...+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~------------ 77 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ------------ 77 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH------------
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh------------
Confidence 344556777888887775433 245567788888899999999999999988743 222100000
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046638 81 GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157 (306)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 157 (306)
. ...-. ......++..+..+|...|++++|+..+++..+ .+...+..+..+|...|++++|...|++..+.
T Consensus 78 ~---~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 78 I---LLDKK---KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HHHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred h---HHHHH---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 00000 000124445555555555666666655555542 23445555566666666666666666665554
Q ss_pred CCCccHHHHHHHHHHHHccCChHHHH
Q 046638 158 EIKPDGTTFLVVLSACCHAGFIDKGL 183 (306)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~ 183 (306)
.+. +...+..+..++...++.+++.
T Consensus 152 ~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 152 NPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp STT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred CCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 322 3444555555555555555444
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.2e-07 Score=78.90 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=14.3
Q ss_pred HHhccccchhhHHHHHHHHHHcC
Q 046638 70 GAIGVISGFKEGKQMHALIFKIG 92 (306)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~ 92 (306)
..+.+.|++++|.+.|..+++..
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~ 34 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKD 34 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSC
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC
Confidence 34456667777777776666643
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.86 E-value=1.4e-07 Score=78.58 Aligned_cols=162 Identities=11% Similarity=-0.012 Sum_probs=73.2
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHcCCC-ccH----HHHHHHHHHHHhcCChHHHHHHHHhcCc-----C----Cchh
Q 046638 65 ITSIVGAIGVISGFKEGKQMHALIFKIGYD-SNV----FVQNRLVFMYAICGAINDANKVFSSMDE-----R----DLVS 130 (306)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~ 130 (306)
+..+...|...|++++|.+.+..+.+.-.. ++. .+.+.+...+...|+++.|.+++++... . -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344455555555555555555554432100 011 1222233333344555555555554431 0 1224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcC--CCCCCc--Hh
Q 046638 131 WNSLLLGCAHHGYSREAVQLFEQMQKT----EIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA--SLEPPR--AE 201 (306)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~ 201 (306)
+..++..|...|++++|..+++++... +-.| ...++..++..|...|++++|..++++..... ...|+. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 455555555666666666655554321 1111 12345555555666666666666655543221 111111 23
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh
Q 046638 202 HYTAIVGLLGRAGFLNEAESFINSM 226 (306)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (306)
.+..++..+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444455555556666655555444
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.86 E-value=1.2e-07 Score=64.61 Aligned_cols=105 Identities=14% Similarity=0.009 Sum_probs=64.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCC----hhhHHHHHHHH
Q 046638 168 VVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPG----PSVYKALLSAC 242 (306)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----~~~~~~l~~~~ 242 (306)
.+...+...|++++|...|+.+.+.....+.....+..++.++...|++++|...|++... .|+ +..+..+..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445556666677776666666654321111114566666667777777777777766654 233 34456666677
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCchHHHHHH
Q 046638 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLL 272 (306)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 272 (306)
...|++++|...|+++++..|+++......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 777777777777777777777765544433
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.84 E-value=3.2e-08 Score=67.52 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=82.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhcC-CCChh----hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hHHHHHHHH
Q 046638 203 YTAIVGLLGRAGFLNEAESFINSMSR-NPGPS----VYKALLSACQVHGNREIAVRSAKRVLDLWPND---PAIYVLLSN 274 (306)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 274 (306)
+..++..+...|++++|...|++... .|+.. .+..+...+...|++++|...|+++++..|++ +.++..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 45677888999999999999999876 34433 67788889999999999999999999999988 788999999
Q ss_pred HHhhcCChhhHHHHHHHHhhcC
Q 046638 275 VSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
++...|++++|...|+++.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999988753
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.83 E-value=4.7e-08 Score=66.59 Aligned_cols=110 Identities=10% Similarity=0.032 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-C----C----hhh
Q 046638 164 TTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-P----G----PSV 234 (306)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~----~----~~~ 234 (306)
..+..+...+...|++++|...+++..... |.+..++..++..+...|++++|...+++.... | + ...
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 345555666666666666666666665543 335566666666666677777777666665541 1 1 445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHh
Q 046638 235 YKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSK 277 (306)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 277 (306)
+..+...+...|++++|...|+++++..| ++.....+..+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 66677777788888888888888888777 4555555555443
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.83 E-value=4e-08 Score=82.56 Aligned_cols=128 Identities=11% Similarity=-0.019 Sum_probs=81.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC------------CcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CC
Q 046638 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP------------PRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NP 230 (306)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 230 (306)
.+..+...+.+.|++++|...|++..+.....+ ....+|..+..+|.+.|++++|+..+++... ..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 344445555555555555555555444221100 0146677777788888888888888877765 24
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHH-HHHHH
Q 046638 231 GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGD-IRTLM 292 (306)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m 292 (306)
+...|..+..+|...|++++|+..|++++++.|++..++..+..++.+.|+.+++.+ .++.|
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777778888888888888888888888777788888888888777777653 34444
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.83 E-value=4.1e-08 Score=66.40 Aligned_cols=97 Identities=15% Similarity=0.025 Sum_probs=63.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CC-ChhhHHHHHHHHH
Q 046638 166 FLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NP-GPSVYKALLSACQ 243 (306)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~ 243 (306)
+..+...+.+.|++++|...|++..+.. |.+...+..+..++...|++++|+..|++... .| +...+..+...+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4445566667777777777777776644 34667777777777777777777777777655 23 4456666777777
Q ss_pred hcCCHHHHHHHHHHHhhcCCCc
Q 046638 244 VHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
..|++++|...++++++..|++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHHHHHhCcCC
Confidence 7777777777777777777754
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.83 E-value=1.3e-08 Score=85.99 Aligned_cols=119 Identities=12% Similarity=0.011 Sum_probs=88.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcC
Q 046638 169 VLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHG 246 (306)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 246 (306)
+...+.+.|++++|.+.+++..+.. |.+..++..+..+|.+.|++++|++.+++.... .+...+..+..+|...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445567788888888888777654 446777888888888888888888888877652 34567778888888888
Q ss_pred CHHHHHHHHHHHhhcCCCchHHHHHHHHH--HhhcCChhhHHHHHH
Q 046638 247 NREIAVRSAKRVLDLWPNDPAIYVLLSNV--SKATDCWDDAGDIRT 290 (306)
Q Consensus 247 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 290 (306)
++++|.+.|+++++..|++...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888888888877777777777 778888888888887
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.83 E-value=4.1e-08 Score=68.65 Aligned_cols=61 Identities=11% Similarity=-0.027 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhc-------CCCchHHH----HHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLDL-------WPNDPAIY----VLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
.|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777888888888888888888887 88888888 8888888888999988888887764
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.83 E-value=1.1e-08 Score=68.68 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=63.4
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHH
Q 046638 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAV 252 (306)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~ 252 (306)
..|++++|+..|++..+.+...|.+..++..+..+|...|++++|...|++... . .+...+..+..++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356777777777777764311234566777777778888888888888877765 2 34556777777788888888888
Q ss_pred HHHHHHhhcCCCchHHH
Q 046638 253 RSAKRVLDLWPNDPAIY 269 (306)
Q Consensus 253 ~~~~~~~~~~p~~~~~~ 269 (306)
..+++++...|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888777765543
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.80 E-value=4.8e-08 Score=69.70 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=64.1
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch-HHHHHHHHH
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDP-AIYVLLSNV 275 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 275 (306)
+..+|..+..+|.+.|++++|+..+++... +.+...|..+..++...|++++|...|++++++.|+++ .....+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 557788888999999999999999988875 24566788888899999999999999999999999877 445555444
Q ss_pred Hhhc
Q 046638 276 SKAT 279 (306)
Q Consensus 276 ~~~~ 279 (306)
..+.
T Consensus 142 ~~~~ 145 (162)
T 3rkv_A 142 TERR 145 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.80 E-value=2.7e-08 Score=67.83 Aligned_cols=98 Identities=7% Similarity=0.011 Sum_probs=86.4
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-------hHHH
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND-------PAIY 269 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~ 269 (306)
....+..++..+...|++++|...|++... +.+...+..+...+...|++++|...+++++...|++ +.++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456788899999999999999999999875 2456778888999999999999999999999977755 7889
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 270 VLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 270 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
..++.++...|++++|.+.|++..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999988753
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.80 E-value=6.8e-08 Score=78.73 Aligned_cols=91 Identities=13% Similarity=-0.014 Sum_probs=80.3
Q ss_pred CcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 046638 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNV 275 (306)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 275 (306)
.+..+|..+..+|.+.|++++|+..+++.... .+...|..+..+|...|++++|...|+++++..|++...+..+..+
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 36678899999999999999999999998873 4567788899999999999999999999999999999999999999
Q ss_pred HhhcCChhhHHHH
Q 046638 276 SKATDCWDDAGDI 288 (306)
Q Consensus 276 ~~~~g~~~~a~~~ 288 (306)
+...++.+++.+.
T Consensus 351 ~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 351 KQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9998888877653
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.79 E-value=5.3e-08 Score=64.36 Aligned_cols=94 Identities=15% Similarity=0.096 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC--cHhHHHHHH
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP--RAEHYTAIV 207 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l~ 207 (306)
.+..+...+...|++++|...|++..+.... +...+..+..++...|++++|.+.+++..+.. |. +..++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~l~ 83 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI---EDEYNKDVWAAKA 83 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccchHHHHHHHH
Confidence 4444444455555555555555554443322 33344444444444455555544444444322 22 334444444
Q ss_pred HHHhcc-CChHHHHHHHHHhc
Q 046638 208 GLLGRA-GFLNEAESFINSMS 227 (306)
Q Consensus 208 ~~~~~~-~~~~~a~~~~~~~~ 227 (306)
.++... |++++|.+.+++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHhCCHHHHHHHHHHHh
Confidence 444444 44444444444443
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.78 E-value=1.1e-06 Score=75.51 Aligned_cols=167 Identities=10% Similarity=-0.029 Sum_probs=113.5
Q ss_pred HHHHHHHHhcCc--C-CchhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccC--C
Q 046638 114 NDANKVFSSMDE--R-DLVSWNSLLLGCAHHGY----------SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG--F 178 (306)
Q Consensus 114 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~ 178 (306)
++|++.++++.+ | +..+|+.-..++...|+ ++++++.++++.+..++ +..+|+.-.-++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 445555555543 2 23345554444444444 67777777777766554 5556666666666666 5
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccC-ChHHHHHHHHHhcCC--CChhhHHHHHHHHHhc----------
Q 046638 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG-FLNEAESFINSMSRN--PGPSVYKALLSACQVH---------- 245 (306)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~---------- 245 (306)
++++++.++++.+.. |.+..+|+.-...+.+.| .++++++.++++.+. .+...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~d---~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 125 WARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred HHHHHHHHHHHHhhc---cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 577777777777654 346677777777777777 677777777777653 3445566655554442
Q ss_pred ----CCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhh
Q 046638 246 ----GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDD 284 (306)
Q Consensus 246 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 284 (306)
+.++++++.+++++...|++..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999888555
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.75 E-value=3.9e-08 Score=79.20 Aligned_cols=147 Identities=14% Similarity=0.015 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHH
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (306)
..+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+ ...+|..+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l------------~~~~~~nla~ 238 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV------------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH------------HTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH------------HHHHHHHHHH
Confidence 34666667777777888888877777654 233321 22333333332221 1136788888
Q ss_pred HHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHH-HhhcCChhhH
Q 046638 209 LLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNV-SKATDCWDDA 285 (306)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a 285 (306)
+|.+.|++++|+..+++... . .+...|..+..+|...|++++|...|+++++..|+++.++..+..+ ....+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988865 2 4567788888889999999999999999999999888888888777 3445667778
Q ss_pred HHHHHHHhhcC
Q 046638 286 GDIRTLMYNRG 296 (306)
Q Consensus 286 ~~~~~~m~~~~ 296 (306)
...|+.|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888876543
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.74 E-value=3.9e-08 Score=82.59 Aligned_cols=154 Identities=10% Similarity=-0.109 Sum_probs=82.4
Q ss_pred hcCChHHHHhhhhhccC---cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHH
Q 046638 8 RCDSSLDFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84 (306)
Q Consensus 8 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (306)
..+++++|.+.|+.... .....|+.+...+.+.|++++|+..|++.++.. |+...+ . .+..
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~--- 309 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKES--- 309 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHH---
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHH---
Confidence 34455666666665432 346678888899999999999999999988753 332100 0 0000
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 046638 85 HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161 (306)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 161 (306)
.+.. .....+|..+..+|.+.|++++|+..|++..+ .+...|..+..+|...|++++|...|++..+..+.
T Consensus 310 -~~~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~- 383 (457)
T 1kt0_A 310 -KASE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ- 383 (457)
T ss_dssp -HHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred -HHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Confidence 0000 01133445555555555555555555555542 23445555555555556666666655555544322
Q ss_pred cHHHHHHHHHHHHccCChHHHH
Q 046638 162 DGTTFLVVLSACCHAGFIDKGL 183 (306)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~ 183 (306)
+...+..+..++.+.++.+++.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555443
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.73 E-value=4.1e-08 Score=82.85 Aligned_cols=118 Identities=10% Similarity=-0.016 Sum_probs=65.1
Q ss_pred HHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCh
Q 046638 103 LVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179 (306)
Q Consensus 103 l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 179 (306)
+...+.+.|++++|++.|++..+ | +...|..+..+|.+.|++++|+..+++..+..+. +...+..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 34445556666666666666543 2 3455666666666666666666666666655332 445555666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCcHhHHHHHHHH--HhccCChHHHHHHHH
Q 046638 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGL--LGRAGFLNEAESFIN 224 (306)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 224 (306)
++|.+.|++..+.. |.+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK---PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS---TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666665543 2233444444444 555666666666666
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.72 E-value=1e-07 Score=67.49 Aligned_cols=137 Identities=10% Similarity=0.020 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hhHHHHHHHhccccchhhHHHHHHHHHHcCCC-ccHHHHH
Q 046638 28 ISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDY----FTITSIVGAIGVISGFKEGKQMHALIFKIGYD-SNVFVQN 101 (306)
Q Consensus 28 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 101 (306)
.++..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|...+++..+.... ++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--- 86 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--- 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH---
Confidence 45666777777778888888777776553110 110 23444444555555555555555554432100 0000
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHHcc
Q 046638 102 RLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT----EIKP-DGTTFLVVLSACCHA 176 (306)
Q Consensus 102 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~ 176 (306)
.....+..+...+...|++++|...+++..+. +..+ ....+..+...+...
T Consensus 87 ------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 87 ------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp ------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 00223444455555555555555555554321 1111 123455556666666
Q ss_pred CChHHHHHHHHHHHh
Q 046638 177 GFIDKGLQYFYLMRN 191 (306)
Q Consensus 177 ~~~~~a~~~~~~~~~ 191 (306)
|++++|.+.+++..+
T Consensus 143 g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 666666666665543
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.71 E-value=1.2e-07 Score=67.64 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 232 PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
...|..+..+|...|++++|+..++++++.+|+++..|..++.++...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3568888999999999999999999999999999999999999999999999999999988764
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.71 E-value=6.9e-08 Score=68.38 Aligned_cols=130 Identities=12% Similarity=-0.041 Sum_probs=74.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC---CcHhHHHHHHHHHhccCChHHHHHHHHHhcCC----CC----hh
Q 046638 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP---PRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----PG----PS 233 (306)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~----~~ 233 (306)
++..+...+...|++++|...+++..+.....+ ....++..+...+...|++++|.+.+++.... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444455555555555555544433210000 01134555566666666666666666555431 11 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcC---C---CchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLDLW---P---NDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
.+..+...+...|++++|...++++++.. + ....++..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45556666777777777777777777631 1 1245677788888888888888888877654
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.69 E-value=4.1e-08 Score=65.92 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=71.5
Q ss_pred ccCChHHHHHHHHHhcCC----CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHH
Q 046638 212 RAGFLNEAESFINSMSRN----PG-PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAG 286 (306)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 286 (306)
..|++++|+..|++.... |+ ...+..+...+...|++++|+..|+++++..|+++.++..++.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468899999999998864 32 3567888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 046638 287 DIRTLMYNR 295 (306)
Q Consensus 287 ~~~~~m~~~ 295 (306)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.67 E-value=9.8e-08 Score=80.28 Aligned_cols=125 Identities=10% Similarity=0.003 Sum_probs=100.4
Q ss_pred HHHccCChHHHHHHHHHHHhc-----CCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC---------CCCh-hhHH
Q 046638 172 ACCHAGFIDKGLQYFYLMRND-----ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR---------NPGP-SVYK 236 (306)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~-~~~~ 236 (306)
.+..+|++++|..++++..+. +..+|....+++.|+.+|...|++++|+.++++... +|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999876543 222333567789999999999999999999988764 1333 4688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh-----cCCCchH---HHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 237 ALLSACQVHGNREIAVRSAKRVLD-----LWPNDPA---IYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
.|...|...|++++|..+++++++ ..|+.|. +...+..++...+.+++|+..|+++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999997 5676554 45678888999999999999999998644
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.7e-08 Score=65.91 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=78.5
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc------hHHHH
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND------PAIYV 270 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 270 (306)
+...+..+...+...|++++|.+.|++... . .+...+..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 566788888888899999999999988765 2 456778888888999999999999999999999987 77888
Q ss_pred HHHHHHhhcCChhhHHHHHHHH
Q 046638 271 LLSNVSKATDCWDDAGDIRTLM 292 (306)
Q Consensus 271 ~l~~~~~~~g~~~~a~~~~~~m 292 (306)
.++.++...|+++.|...++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8889998888888887766544
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.65 E-value=1.8e-07 Score=75.31 Aligned_cols=153 Identities=7% Similarity=-0.059 Sum_probs=87.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHc
Q 046638 96 NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175 (306)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 175 (306)
....+..+...+.+.|++++|+..|++....+.... .+...++.+++...+. ...|..+..++.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 355678888999999999999999999775222111 1223344444443321 1367788889999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC-hhhHHHHHHH-HHhcCCHHHHH
Q 046638 176 AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG-PSVYKALLSA-CQVHGNREIAV 252 (306)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~l~~~-~~~~~~~~~a~ 252 (306)
.|++++|+..+++..+.. |.+..++..+..+|...|++++|...|++.... |+ ...+..+... ....+..+++.
T Consensus 243 ~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEE---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred cCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988754 458889999999999999999999999998763 43 3445545444 34456778888
Q ss_pred HHHHHHhhcCCCch
Q 046638 253 RSAKRVLDLWPNDP 266 (306)
Q Consensus 253 ~~~~~~~~~~p~~~ 266 (306)
..|++++...|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999998888653
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.56 E-value=1e-06 Score=71.82 Aligned_cols=135 Identities=8% Similarity=-0.109 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccC
Q 046638 98 FVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177 (306)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 177 (306)
..+..+...+.+.|++++|+..|++..+..... ..... .++..... +.+...|..+..++.+.|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~--------~~~~~-------~~~~~~~~-~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS--------RAAAE-------DADGAKLQ-PVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------HHHSC-------HHHHGGGH-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC--------ccccC-------hHHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 345666677777777777777776655300000 00000 00000000 012334445555555555
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CC-ChhhHHHHHHHHHhcCCHHHH
Q 046638 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NP-GPSVYKALLSACQVHGNREIA 251 (306)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a 251 (306)
++++|+..+++..+.. |.+..++..+..+|...|++++|...|++... .| +...+..+...+...++.+++
T Consensus 288 ~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 288 DWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555422 33445555555555555555555555555443 12 233344444444444444443
No 194
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.54 E-value=8.9e-05 Score=62.75 Aligned_cols=203 Identities=8% Similarity=-0.039 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH-HHHHh
Q 046638 44 EQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN-KVFSS 122 (306)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~ 122 (306)
+.+..+|++++... +.+...|...+..+.+.|+.+.|..++++.+.. + .+...+.. |....+.++.. .+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 45667777777653 344566766677677778888888888888877 2 23333322 22221111111 11111
Q ss_pred cC------------cCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHc-cCChHHHHHHHHHH
Q 046638 123 MD------------ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH-AGFIDKGLQYFYLM 189 (306)
Q Consensus 123 ~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 189 (306)
.. ......|...+....+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 001234555666666677788888888877 22 12233334322222122 23577888888877
Q ss_pred HhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
.+..+ .++..+...++.....|+.+.|..+|+++.. ....|...+..-...|+.+.+..+++++..
T Consensus 347 l~~~~---~~~~~~~~yid~e~~~~~~~~aR~l~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHP---DSTLLKEEFFLFLLRIGDEENARALFKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 76542 2445566667767777888888888888742 455666666666667888888777777765
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.54 E-value=7.4e-07 Score=56.39 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=66.9
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 276 (306)
+...+..+...+...|++++|...|++... +.+...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456777788888888888888888888765 235567788888899999999999999999999999888888888887
Q ss_pred hhcC
Q 046638 277 KATD 280 (306)
Q Consensus 277 ~~~g 280 (306)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6654
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.49 E-value=6.3e-06 Score=70.95 Aligned_cols=151 Identities=7% Similarity=-0.047 Sum_probs=125.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC----------hHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHH
Q 046638 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF----------IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLL 210 (306)
Q Consensus 141 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (306)
....++|++.++++....+. +...|+.-..++...|+ ++++++.++.+.+.. |.+..+|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 34457889999999987655 55667766666666776 899999999998765 56899999999999
Q ss_pred hccC--ChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhc------
Q 046638 211 GRAG--FLNEAESFINSMSR--NPGPSVYKALLSACQVHG-NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKAT------ 279 (306)
Q Consensus 211 ~~~~--~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 279 (306)
.+.+ ++++++++++++.+ ..+...|+.-...+...| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 67999999999986 356778888888888888 899999999999999999999999998887774
Q ss_pred --------CChhhHHHHHHHHhhc
Q 046638 280 --------DCWDDAGDIRTLMYNR 295 (306)
Q Consensus 280 --------g~~~~a~~~~~~m~~~ 295 (306)
+.++++++++++....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5578888888877753
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.47 E-value=1.1e-06 Score=58.63 Aligned_cols=82 Identities=11% Similarity=-0.028 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046638 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKR 257 (306)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (306)
+.|+..|++..+.. |.+...+..++..|...|++++|...|++... . .+...|..+...+...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG---TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35677777777543 45777888888888888888888888888765 2 3456777788888888888888888888
Q ss_pred HhhcCCC
Q 046638 258 VLDLWPN 264 (306)
Q Consensus 258 ~~~~~p~ 264 (306)
+++..|.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 8887663
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.47 E-value=2.2e-06 Score=59.89 Aligned_cols=27 Identities=15% Similarity=-0.015 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQK 156 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 156 (306)
.|..+..++.+.|++++|+..+++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444445555555555555555544443
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.44 E-value=6.3e-06 Score=56.88 Aligned_cols=111 Identities=12% Similarity=-0.021 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhc----cCChH
Q 046638 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR----AGFLN 217 (306)
Q Consensus 142 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 217 (306)
+++++|+.+|++..+.|. |+.. +...|...+..++|.++|++..+.+ ++..+..|...|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCccHH
Confidence 355666666666666552 2222 4555555555666666666665543 44555666666655 55666
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhcC
Q 046638 218 EAESFINSMSRNPGPSVYKALLSACQV----HGNREIAVRSAKRVLDLW 262 (306)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 262 (306)
+|.++|++..+..++..+..|...|.. .++.++|...|+++.+..
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666666555555555555555555 556666666666665543
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.44 E-value=1.3e-06 Score=56.67 Aligned_cols=66 Identities=8% Similarity=-0.029 Sum_probs=40.6
Q ss_pred CcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 046638 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263 (306)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 263 (306)
.++..+..++.+|...|++++|+..|++... . .+...|..+..+|...|++++|...|+++++..|
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3556666666666666666666666666654 1 2344566666666666666666666666665433
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.39 E-value=9.8e-06 Score=55.91 Aligned_cols=112 Identities=11% Similarity=-0.024 Sum_probs=80.5
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHh----cCCHHHHH
Q 046638 177 GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV----HGNREIAV 252 (306)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 252 (306)
+++++|.++|++..+.+. +.. . +...|...+.+++|.+.|++..+..++..+..+...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g~---~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE---MFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC---TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC---Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 356777777877776552 122 3 677777777777788888877766677777777777776 67888888
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHhh----cCChhhHHHHHHHHhhcCC
Q 046638 253 RSAKRVLDLWPNDPAIYVLLSNVSKA----TDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 253 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 297 (306)
..|+++.+. .++..+..|+..|.. .++.++|.++|++..+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 888887765 356677778888777 7788888888877766654
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.38 E-value=2.8e-06 Score=71.49 Aligned_cols=124 Identities=8% Similarity=-0.067 Sum_probs=79.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-----CC-Ccc-HHHHHHHHHHHHccCChHHHHHHHHHHHh-----cCCCCCCcHhHHH
Q 046638 137 GCAHHGYSREAVQLFEQMQKT-----EI-KPD-GTTFLVVLSACCHAGFIDKGLQYFYLMRN-----DASLEPPRAEHYT 204 (306)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~-----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~ 204 (306)
.+...|++++|+.++++..+. |. .|+ ..+++.+..+|...|++++|..++++..+ .+..+|....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777777777766542 11 222 34677777777777887777777766443 2344444556677
Q ss_pred HHHHHHhccCChHHHHHHHHHhcC---------CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 205 AIVGLLGRAGFLNEAESFINSMSR---------NPGP-SVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
.|+..|...|++++|+.++++... +|+. .+...+..++...+.+++|...|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888887777776653 1222 2344555666777788888888887765
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.37 E-value=1.1e-06 Score=61.30 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=66.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCCh----------HHHHHHHHHhcC-CC-ChhhHHHHHHHHH
Q 046638 176 AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL----------NEAESFINSMSR-NP-GPSVYKALLSACQ 243 (306)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~-~~-~~~~~~~l~~~~~ 243 (306)
.+.+++|.+.++...+.. |.+...|..+..++...+++ ++|+..|++... .| +...|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 344555555555555433 33555555555555555443 466666666654 23 3455666666666
Q ss_pred hc-----------CCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 244 VH-----------GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 244 ~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
.. |++++|+..|+++++++|++...... +. ..++|-++.-.+...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a-l~------~~~ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS-LE------MTAKAPQLHAEAYKQGL 149 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-HH------HHHTHHHHHHHHHHSSS
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH-HH------HHHhCHhccCccccccc
Confidence 55 58999999999999999987533322 22 23456666655555444
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.34 E-value=6.5e-07 Score=62.48 Aligned_cols=85 Identities=9% Similarity=-0.005 Sum_probs=72.8
Q ss_pred hccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCH----------HHHHHHHHHHhhcCCCchHHHHHHHHHHhh
Q 046638 211 GRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNR----------EIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278 (306)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 278 (306)
.+.+.+++|.+.+++... . .+...|..+..++...+++ ++|+..|+++++++|++..+|..++.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 356778999999998875 3 4667788888888888765 599999999999999999999999999998
Q ss_pred cC-----------ChhhHHHHHHHHhhc
Q 046638 279 TD-----------CWDDAGDIRTLMYNR 295 (306)
Q Consensus 279 ~g-----------~~~~a~~~~~~m~~~ 295 (306)
.| ++++|++.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999988874
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.34 E-value=8.4e-07 Score=58.48 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCc------HhHH
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR------AEHY 203 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ 203 (306)
.+..+...+...|++++|+..|++..+..+. +...+..+..++...|++++|.+.+++..+.. |.+ ...+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT---STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC---SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCccHHHHHHHHH
Confidence 4444555555555555555555555544322 34445555555555555555555555555432 222 3344
Q ss_pred HHHHHHHhccCChHHHHHHHH
Q 046638 204 TAIVGLLGRAGFLNEAESFIN 224 (306)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~ 224 (306)
..+..++...|+++.|...++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 444444444444444444333
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.30 E-value=4e-06 Score=55.73 Aligned_cols=79 Identities=11% Similarity=-0.023 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHH
Q 046638 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225 (306)
Q Consensus 146 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (306)
+|+..|++..+..+. +...+..+..++...|++++|...|++..+.. |.+...+..+..+|...|++++|...|++
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456666666655432 45666677777777777777777777776544 34566677777777777777777777776
Q ss_pred hcC
Q 046638 226 MSR 228 (306)
Q Consensus 226 ~~~ 228 (306)
...
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.18 E-value=1.6e-05 Score=50.45 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=48.5
Q ss_pred CChhhHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 230 PGPSVYKALLSACQVHGN---REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
.++..+..+..++...++ .++|...++++++.+|+++.....++..+.+.|++++|+..|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345556666666544433 57788888888888888888888888888888888888888877776543
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.17 E-value=3.3e-05 Score=48.48 Aligned_cols=83 Identities=8% Similarity=0.075 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (306)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+..+. +..++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45567777888888888888888888887754 235566777777888888888888888888877543 5666666666
Q ss_pred HHHhc
Q 046638 106 MYAIC 110 (306)
Q Consensus 106 ~~~~~ 110 (306)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66544
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.13 E-value=9.2e-06 Score=52.52 Aligned_cols=61 Identities=21% Similarity=0.109 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 233 SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
..+..+...+...|++++|+..|+++++..|+++.++..++.+|...|++++|++.|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555555555555555554443
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.09 E-value=7.4e-06 Score=52.68 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=55.6
Q ss_pred HHHHHhccCChHHHHHHHHHhcC-CC-Chh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCCh
Q 046638 206 IVGLLGRAGFLNEAESFINSMSR-NP-GPS-VYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCW 282 (306)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 282 (306)
.+..+...|++++|...|++... .| +.. .+..+...+...|++++|...|+++++..|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 45566777888888888877765 23 445 67777777888888888888888888888877666532 445
Q ss_pred hhHHHHHHHHh
Q 046638 283 DDAGDIRTLMY 293 (306)
Q Consensus 283 ~~a~~~~~~m~ 293 (306)
.++...|++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 55566554443
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.04 E-value=1.7e-05 Score=65.74 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=66.2
Q ss_pred ccCChHHHHHHHHHHHhc-----CCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC---------CCCh-hhHHHHH
Q 046638 175 HAGFIDKGLQYFYLMRND-----ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR---------NPGP-SVYKALL 239 (306)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~-~~~~~l~ 239 (306)
..|++++|..++++..+. +..+|....+++.|+.+|...|++++|+.++++... +|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457788888888775542 222233346677888888888888888888877653 1333 3577788
Q ss_pred HHHHhcCCHHHHHHHHHHHhh-----cCCCchHHH
Q 046638 240 SACQVHGNREIAVRSAKRVLD-----LWPNDPAIY 269 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 269 (306)
..|..+|++++|..+++++++ ..|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 888888888888888888876 467666544
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.00 E-value=5.5e-05 Score=62.71 Aligned_cols=103 Identities=11% Similarity=-0.023 Sum_probs=77.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcC-----CCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC---------CCCh-h
Q 046638 169 VLSACCHAGFIDKGLQYFYLMRNDA-----SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR---------NPGP-S 233 (306)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~-~ 233 (306)
.+..+.+.|++++|..++++..+.. ..+|....+++.++..|...|++++|+.++++... +|+. .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667889999999998876532 12222456788889999999999999999887764 1333 3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCchHHHHH
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLD-----LWPNDPAIYVL 271 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 271 (306)
+++.|...|...|++++|..+++++++ ..|++|.+-..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 578888899999999999999999887 57777655443
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.93 E-value=0.0015 Score=52.26 Aligned_cols=146 Identities=11% Similarity=-0.055 Sum_probs=93.2
Q ss_pred CCchhHHHHHHHH--HhcC---CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHc---cC-----ChHHHHHHHHHHHhc
Q 046638 126 RDLVSWNSLLLGC--AHHG---YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH---AG-----FIDKGLQYFYLMRND 192 (306)
Q Consensus 126 ~~~~~~~~l~~~~--~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~-----~~~~a~~~~~~~~~~ 192 (306)
.+...|...+.+. ...+ +..+|..+|++..+..+. ....+..+.-++.. .+ ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a- 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT- 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT-
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh-
Confidence 4566677666553 3333 357888888888876543 23344433333321 11 11111112222111
Q ss_pred CCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHH
Q 046638 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVL 271 (306)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 271 (306)
....|.++.+|..+...+...|++++|...++++.. +|+...|..+...+...|++++|.+.|++++.++|..+ +|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~ 348 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYW 348 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHH
Confidence 122255888888888888888999999999998876 47777777778888899999999999999999999654 5544
Q ss_pred HHH
Q 046638 272 LSN 274 (306)
Q Consensus 272 l~~ 274 (306)
.-.
T Consensus 349 ~~~ 351 (372)
T 3ly7_A 349 IEN 351 (372)
T ss_dssp HHH
T ss_pred HhC
Confidence 433
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.89 E-value=5.4e-05 Score=48.50 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=54.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCchH-HHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPA-IYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
....+...|++++|+..++++++..|+++. .+..++.++...|++++|...|++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456688999999999999999999999999 99999999999999999999999988754
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.85 E-value=7.6e-05 Score=61.87 Aligned_cols=88 Identities=11% Similarity=0.053 Sum_probs=71.6
Q ss_pred HHHHHhccCChHHHHHHHHHhcCC------CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCC---chH
Q 046638 206 IVGLLGRAGFLNEAESFINSMSRN------PG----PSVYKALLSACQVHGNREIAVRSAKRVLD-----LWPN---DPA 267 (306)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~~ 267 (306)
.+..+.+.|++++|+.++++.... |+ ..+++.+..+|...|++++|+.++++++. ..|+ ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345566789999999999988652 22 24688899999999999999999999987 3444 445
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 268 IYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 268 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
+++.|+..|...|++++|+.++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 68899999999999999999998765
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.82 E-value=2.6e-05 Score=64.54 Aligned_cols=83 Identities=6% Similarity=-0.013 Sum_probs=67.8
Q ss_pred ccCChHHHHHHHHHhcC---C------CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCC---chHHHHHHH
Q 046638 212 RAGFLNEAESFINSMSR---N------PG-PSVYKALLSACQVHGNREIAVRSAKRVLD-----LWPN---DPAIYVLLS 273 (306)
Q Consensus 212 ~~~~~~~a~~~~~~~~~---~------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~~~~~~l~ 273 (306)
..|++++|+.++++... + |+ ..+++.+..+|...|++++|+.+++++++ ..|+ ...+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45789999999987654 1 22 24688999999999999999999999997 3444 445688999
Q ss_pred HHHhhcCChhhHHHHHHHHhh
Q 046638 274 NVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~ 294 (306)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999987753
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.75 E-value=0.0022 Score=51.37 Aligned_cols=133 Identities=8% Similarity=0.029 Sum_probs=71.6
Q ss_pred CCCChhhHHHHHHHhcc-----ccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---C-C-------hHHHHHHHH
Q 046638 58 IDIDYFTITSIVGAIGV-----ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---G-A-------INDANKVFS 121 (306)
Q Consensus 58 ~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~-------~~~a~~~~~ 121 (306)
.+.+...|...+++... ..+..+|..+|+++++..+. ....+..+..+|... + . ...+.+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 45566777776665432 23457888888888887643 344555444444311 0 0 011111111
Q ss_pred hcC--cCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 046638 122 SMD--ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193 (306)
Q Consensus 122 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (306)
.+. ..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.....
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 111 1344455555555555566666666666666554 455555555666666666666666666665543
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.63 E-value=0.0032 Score=56.71 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=25.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 168 VVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
.+.......|+++.|...+-... + +...++.|.+.+++++|..+-+...
T Consensus 728 ~~~~~a~~~~~~~~A~~~~~~~g--------~---~~~a~~~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 728 TLAKDAETTGKFNLAFNAYWIAG--------D---IQGAKDLLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT--------C---HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCchHHHHHHHHHcC--------C---HHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34444455555555555543321 1 2344555666666666666666543
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.58 E-value=0.0096 Score=53.60 Aligned_cols=155 Identities=10% Similarity=0.066 Sum_probs=98.6
Q ss_pred HHHhcCChHHHHH-HHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 046638 36 GFCNLGSGEQALK-CFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114 (306)
Q Consensus 36 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 114 (306)
.....+++++|.+ ++.. + |+......++..+.+.|.++.|.++.+. |. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHH
Confidence 3456788888876 4411 1 1122336666777778888877765531 11 1133456789999
Q ss_pred HHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 046638 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194 (306)
Q Consensus 115 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (306)
.|.++.+.+. +...|..+...+.+.++++.|...|.++.. |..+...+...|+.+...++-+.....+.
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 9999887764 457899999999999999999999988742 33444555557777766655555544331
Q ss_pred CCCCcHhHHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
++.-..+|.+.|++++|++++.++.
T Consensus 739 --------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 739 --------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp --------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred --------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2334445666777777777665554
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.56 E-value=0.00056 Score=43.25 Aligned_cols=68 Identities=10% Similarity=-0.044 Sum_probs=41.2
Q ss_pred CCcHhHHHHHHHHHhccCC---hHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 197 PPRAEHYTAIVGLLGRAGF---LNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
|+++..+..+..++...++ .++|..++++... +.++.....+...+...|++++|+..|+++++..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456666666666644333 5666666666654 233445555566666677777777777777766665
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.53 E-value=0.00094 Score=46.10 Aligned_cols=89 Identities=10% Similarity=-0.032 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccC---ChHHHHHHHHHhcCC--C--ChhhHHHHHHHHHhcCCHHHH
Q 046638 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG---FLNEAESFINSMSRN--P--GPSVYKALLSACQVHGNREIA 251 (306)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a 251 (306)
...+.+.|.+....+ +++..+...+..++++.+ ++++++.+|+...+. | ....+-.+.-++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344555555555433 247788888888888887 566888888887653 3 234455566678999999999
Q ss_pred HHHHHHHhhcCCCchHHHH
Q 046638 252 VRSAKRVLDLWPNDPAIYV 270 (306)
Q Consensus 252 ~~~~~~~~~~~p~~~~~~~ 270 (306)
.++++.+++.+|++.....
T Consensus 91 ~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 9999999999998765543
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.52 E-value=0.00074 Score=43.74 Aligned_cols=74 Identities=20% Similarity=0.139 Sum_probs=52.5
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHH
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRN---------PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIY 269 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 269 (306)
+..-+..++..+.+.|++..|...|+..... +....+..+..++.+.|+++.|...++++++..|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444556666666777777777666665431 2345677888888999999999999999999999887665
Q ss_pred HHH
Q 046638 270 VLL 272 (306)
Q Consensus 270 ~~l 272 (306)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.44 E-value=0.0011 Score=50.98 Aligned_cols=86 Identities=10% Similarity=0.067 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcC-CCC---hhhHHHHHHHHHh-----cCCHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHhh-cCChhhH
Q 046638 217 NEAESFINSMSR-NPG---PSVYKALLSACQV-----HGNREIAVRSAKRVLDLWPND-PAIYVLLSNVSKA-TDCWDDA 285 (306)
Q Consensus 217 ~~a~~~~~~~~~-~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~g~~~~a 285 (306)
..|...+++..+ .|+ ...|..+...|.. -|+.++|.+.|+++++++|+. ..++...+..++. .|+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 455555655554 344 4456667777776 378888888888888888863 7777777777777 4778888
Q ss_pred HHHHHHHhhcCCCCCCC
Q 046638 286 GDIRTLMYNRGIRKKPG 302 (306)
Q Consensus 286 ~~~~~~m~~~~~~~~~~ 302 (306)
.+.+++........+|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 88887777765554343
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.36 E-value=0.00077 Score=46.53 Aligned_cols=80 Identities=9% Similarity=-0.086 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhcC--CCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhcC-C-CchHHHHHHHHHHhhcCChhhHHHH
Q 046638 216 LNEAESFINSMSR--NPGPSVYKALLSACQVHG---NREIAVRSAKRVLDLW-P-NDPAIYVLLSNVSKATDCWDDAGDI 288 (306)
Q Consensus 216 ~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~ 288 (306)
...+.+-|.+... .++..+...+..++++.+ +.++++.+++...+.. | ++...+..|+.+|.+.|++++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 4455555655433 367777778888899988 6779999999999987 7 4577889999999999999999999
Q ss_pred HHHHhhc
Q 046638 289 RTLMYNR 295 (306)
Q Consensus 289 ~~~m~~~ 295 (306)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999863
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.25 E-value=6.1e-09 Score=84.68 Aligned_cols=242 Identities=10% Similarity=0.122 Sum_probs=157.1
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (306)
.+..|..|..+....+++.+|++.|-+. -|+..|..++.+..+.|.++.-..++....+..-+ +..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke--~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS--TTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc--cccHHHHHH
Confidence 4567999999999999999998776322 36678899999999999999999999988876433 344467899
Q ss_pred HHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------------------CCCccHHH
Q 046638 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT--------------------EIKPDGTT 165 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------------------~~~p~~~~ 165 (306)
+|++.++..+..+++. .|+..-...+..-|...|.++.|.-+|..+... .-.-+..|
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 9999998776443322 356655666666677777776666665543211 01124567
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHH
Q 046638 166 FLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQ 243 (306)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~ 243 (306)
|-.+-.+|...+++.-|...--.+.-.. .-...++..|-..|.+++.+.+++.... +.....|+-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvha-------deL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVHA-------DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCCS-------SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcccH-------HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 7777777777777776655443333211 1133466777778888888888877664 456667777777776
Q ss_pred hcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHH
Q 046638 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTL 291 (306)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 291 (306)
+- ++++..+.++.... .-+- --++++|.+..-|.++.-++..
T Consensus 275 KY-~PeKlmEHlklf~s-riNi----pKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWS-RVNI----PKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp SS-CTTHHHHHHTTSSS-SSCC----TTTHHHHTTTTCHHHHHHHHHH
T ss_pred hc-CHHHHHHHHHHHHH-hccH----HHHHHHHHHHhhHHHHHHHHhc
Confidence 65 34444433333222 1111 2346777777777777766653
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.029 Score=39.72 Aligned_cols=102 Identities=8% Similarity=0.063 Sum_probs=57.4
Q ss_pred hhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHH
Q 046638 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85 (306)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (306)
...+|+++.|.++.+.+ .+...|..|.......|+++-|+++|.+... +..+.-.|.-.|+.++..++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34567777777766655 3455677777777777777777777765532 233333444456555555444
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcC
Q 046638 86 ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124 (306)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 124 (306)
+.....|- ++....++.-.|+++++.++|.+..
T Consensus 84 ~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44444431 2333334445566666666655444
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.19 E-value=0.095 Score=45.45 Aligned_cols=70 Identities=10% Similarity=0.028 Sum_probs=35.7
Q ss_pred hhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 046638 5 TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (306)
.+.+.++.......+.. ++.+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|
T Consensus 81 ~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 81 ELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 34455566666665554 33344444445555666666666655555554443 233444455555444433
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.10 E-value=0.0065 Score=39.16 Aligned_cols=68 Identities=1% Similarity=-0.177 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCC
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAG------IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 93 (306)
+...+..|...+...|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34456677888888888888888888776531 112345566666677777777777777777776543
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.052 Score=38.43 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=46.5
Q ss_pred HhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHH
Q 046638 108 AICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187 (306)
Q Consensus 108 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (306)
...|+++.|.++.+++ .+...|..|.......|+++-|...|.+... +..+.-.|.-.|+.+.-.++-+
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHH
Confidence 4445555555555444 2344555555555555555555555554421 2223333334444444443333
Q ss_pred HHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
.....+. ++.-...+...|+++++.++|.+..
T Consensus 85 iA~~~g~--------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 85 IAQTRED--------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHCcc--------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 3332221 2333344445555555555554443
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.91 E-value=0.027 Score=37.38 Aligned_cols=90 Identities=11% Similarity=-0.014 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHH---HHHHHHHhcCCCCh----hhHHHHHHHHHhcCCHHH
Q 046638 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE---AESFINSMSRNPGP----SVYKALLSACQVHGNREI 250 (306)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 250 (306)
....+.+-|......+. ++..+-..+..++.+...... ++.+++.+....++ ...-.+.-++.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~~---~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34445555555544332 477778888888888877665 88888888764211 233445667899999999
Q ss_pred HHHHHHHHhhcCCCchHHHH
Q 046638 251 AVRSAKRVLDLWPNDPAIYV 270 (306)
Q Consensus 251 a~~~~~~~~~~~p~~~~~~~ 270 (306)
|.+.++.+++..|++..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999998866543
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.85 E-value=0.0098 Score=40.60 Aligned_cols=57 Identities=7% Similarity=-0.019 Sum_probs=28.2
Q ss_pred cCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHH
Q 046638 213 AGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIY 269 (306)
Q Consensus 213 ~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 269 (306)
.++.++|.++|+.+.. +.-...|.....--.++|++..|.+++.+++...|.+...+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 3555555555555532 11133343334444555666666666666666555443333
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.78 E-value=0.058 Score=36.15 Aligned_cols=141 Identities=13% Similarity=0.080 Sum_probs=97.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChH
Q 046638 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLN 217 (306)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (306)
+.-.|..++..++..+..... +..-|+-++.-....-+=+-..++++.+-+-..+ ..+|+..
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi---------------s~C~NlK 78 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL---------------DKCQNLK 78 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG---------------GGCSCTH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc---------------HhhhcHH
Confidence 445678888888888776542 3344555555545555555556666655443321 2456666
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 218 EAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
.....+-.+. .+.......++.+...|+-++-.+++..++...|.++.....++.+|.+.|+..+|.+++.+.-++|+
T Consensus 79 rVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 79 SVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 6666666554 34555666788888999999999999997776666788999999999999999999999999888887
Q ss_pred C
Q 046638 298 R 298 (306)
Q Consensus 298 ~ 298 (306)
.
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.53 E-value=0.017 Score=44.53 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccc-cchhhHHHHHHHHHHcCCC
Q 046638 27 QISWNAIIAGFCN-----LGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI-SGFKEGKQMHALIFKIGYD 94 (306)
Q Consensus 27 ~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~ 94 (306)
...|..+...|.. .|+.++|.+.|++.++.+..-+..++......++.. ++.+.+.+.+++.+...+.
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3456666666665 366666666666666643211345555555555553 6666666666666665544
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.44 E-value=0.00022 Score=58.64 Aligned_cols=229 Identities=10% Similarity=0.103 Sum_probs=163.0
Q ss_pred hhhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHH
Q 046638 4 LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (306)
.++.+.|++.+|++-|- ...|+..|..+|.+..+.|++++-+..+.-.++.. -++..=+.|+-+|++.++..+-.+
T Consensus 62 kAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEe 137 (624)
T 3lvg_A 62 KAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 137 (624)
T ss_dssp HHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTS
T ss_pred HHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHH
Confidence 34445556666655543 34567778999999999999999999987766643 344445678889999998776544
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc------------------------CCchhHHHHHHHHH
Q 046638 84 MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE------------------------RDLVSWNSLLLGCA 139 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~~~~l~~~~~ 139 (306)
++. .|+..-...+++-|...|.++.|.-+|..+.. .++.+|..+-.+|.
T Consensus 138 fl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv 210 (624)
T 3lvg_A 138 FIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 210 (624)
T ss_dssp TTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH
T ss_pred HHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Confidence 432 35555566788888889999888888877652 36779999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHH
Q 046638 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219 (306)
Q Consensus 140 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (306)
..+.+.-|.-.--.++- .|+ ....++..|...|.+++-+.+++.-.. ........|+.|.-.|++- ++++.
T Consensus 211 d~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglg---lErAHmGmFTELaILYsKY-~PeKl 281 (624)
T 3lvg_A 211 DGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKF-KPQKM 281 (624)
T ss_dssp HSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT---STTCCHHHHHHHHHHHHSS-CTTHH
T ss_pred CchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHhc-CHHHH
Confidence 99998877655444332 222 123467788899999999999887763 3345888899999888875 66666
Q ss_pred HHHHHHhcCC----------CChhhHHHHHHHHHhcCCHHHHH
Q 046638 220 ESFINSMSRN----------PGPSVYKALLSACQVHGNREIAV 252 (306)
Q Consensus 220 ~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~ 252 (306)
.+-++..-.+ .....|.-++-.|.+-.+++.|.
T Consensus 282 mEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 282 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 6665544332 34556888888888888888664
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.03 Score=49.49 Aligned_cols=123 Identities=14% Similarity=0.117 Sum_probs=80.1
Q ss_pred HHHHHHHHccCC-hHHHHHHHHHHHhcCCCCCCcHhHH--HHHHHHHhccCC-hHHHHHHHHHhcC--------CC--Ch
Q 046638 167 LVVLSACCHAGF-IDKGLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGF-LNEAESFINSMSR--------NP--GP 232 (306)
Q Consensus 167 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~-~~~a~~~~~~~~~--------~~--~~ 232 (306)
..++..+...++ .+.|..+++++.... | ...++ ..++..+...++ --+|.+++.+..+ .+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~---p-~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD---P-IHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC---G-GGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC---C-chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 345555555666 577888888887754 2 33222 223333333332 2244444443321 11 11
Q ss_pred h----------hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 233 S----------VYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 233 ~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
. ....=..-+...|+++-|+.+.+++....|.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0 111112336678999999999999999999999999999999999999999999999884
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.26 E-value=0.56 Score=42.60 Aligned_cols=250 Identities=9% Similarity=-0.011 Sum_probs=136.6
Q ss_pred hhhcCChHHHHhhhhhccC----cchH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCC--C-----CChhhHHHHHHHh
Q 046638 6 YSRCDSSLDFQNVYSSVRT----RNQI--SWNAIIAGFCNLGSGEQALKCFSEMRQAGI--D-----IDYFTITSIVGAI 72 (306)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~~ 72 (306)
....|+.+++..+++.... .+.. .-..+.-+....|..+++..++...+...- . +....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3456778888888877543 2222 223344556667766778887777655321 0 1011111222222
Q ss_pred ccccc-hhhHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCChHHHHHHHHhcCc-CCch--hHHHHHHHHHhcCCHHH
Q 046638 73 GVISG-FKEGKQMHALIFKIGYDSNV--FVQNRLVFMYAICGAINDANKVFSSMDE-RDLV--SWNSLLLGCAHHGYSRE 146 (306)
Q Consensus 73 ~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~ 146 (306)
+-.|. -+++...+..++...- +.. .+-..|...+.-.|+-+-...++..+.+ .+.. -.-.+.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22232 2455666666655321 111 1222344556666777766777666543 2222 22333444557888888
Q ss_pred HHHHHHHHHhcCCCccHHH--HHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 046638 147 AVQLFEQMQKTEIKPDGTT--FLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224 (306)
Q Consensus 147 a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (306)
+..+++.+... ..|.... -..+..+|+..|+.....++++.+..... .++.-...+.-++...|+.+.+.++++
T Consensus 543 ~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~---d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN---DDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc---HHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888887654 2333222 12445577888998777778888876432 244444455556666777777888887
Q ss_pred HhcCCCChhhHHH--HHHHHHhcCCH-HHHHHHHHHHhh
Q 046638 225 SMSRNPGPSVYKA--LLSACQVHGNR-EIAVRSAKRVLD 260 (306)
Q Consensus 225 ~~~~~~~~~~~~~--l~~~~~~~~~~-~~a~~~~~~~~~ 260 (306)
.+....++.+-.. +.-+....|+. .+++..+..+..
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7765544443322 23333444443 567777777754
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.08 E-value=0.028 Score=37.32 Aligned_cols=82 Identities=9% Similarity=-0.107 Sum_probs=62.2
Q ss_pred CChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHH---HHHHHHHHhhcC-C-CchHHHHHHHHHHhhcCChhhHH
Q 046638 214 GFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREI---AVRSAKRVLDLW-P-NDPAIYVLLSNVSKATDCWDDAG 286 (306)
Q Consensus 214 ~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~ 286 (306)
.....+.+-|.+... .++..+--.+..++.+..+... ++.+++...+.. | ........|+.++.+.|++++|+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344455555554433 4677777777888888776655 999999999876 5 35667888999999999999999
Q ss_pred HHHHHHhhc
Q 046638 287 DIRTLMYNR 295 (306)
Q Consensus 287 ~~~~~m~~~ 295 (306)
++++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998863
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.04 E-value=0.39 Score=43.63 Aligned_cols=254 Identities=10% Similarity=-0.050 Sum_probs=120.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHH--HHHHHhccccchhhHHHHHHHHHHcCC-------CccHHHHHHHHHH
Q 046638 36 GFCNLGSGEQALKCFSEMRQAGIDIDYFTIT--SIVGAIGVISGFKEGKQMHALIFKIGY-------DSNVFVQNRLVFM 106 (306)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 106 (306)
+....|+.++++..+...+..+-..+..+-. .+.-.....|..+++..++...+...- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3555666666666655543311011222111 112223344444456776666554321 0112222223333
Q ss_pred HHhcCC-hHHHHHHHHhcCc-CCch----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChH
Q 046638 107 YAICGA-INDANKVFSSMDE-RDLV----SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180 (306)
Q Consensus 107 ~~~~g~-~~~a~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 180 (306)
.+-.|. -+++.+.+..+.. .+.. +--+|...++..|+.+....++..+.+.. .-+..-...+.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 332332 2344555544442 3321 11233344556677777777777665432 112222233333445678888
Q ss_pred HHHHHHHHHHhcCCCCCCcHhHHH--HHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHH--HHHhcCCHHHHHHHHH
Q 046638 181 KGLQYFYLMRNDASLEPPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS--ACQVHGNREIAVRSAK 256 (306)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~ 256 (306)
.+..+.+.+..... |....-. .+.-+|+..|+.....+++..+...++..+-...+. ++...|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~d---p~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASDE---SLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCSC---HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCCC---HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888877775331 2332222 344567777887777778888776544433332222 3444666666666666
Q ss_pred HHhhcCCCchHHHHHHHHHHhhcCCh-hhHHHHHHHHh
Q 046638 257 RVLDLWPNDPAIYVLLSNVSKATDCW-DDAGDIRTLMY 293 (306)
Q Consensus 257 ~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 293 (306)
.+.+........-..++.+....|.. .++.+.+..+.
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 55542211222223333333333332 45666666664
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.86 E-value=0.22 Score=46.88 Aligned_cols=49 Identities=8% Similarity=0.042 Sum_probs=27.9
Q ss_pred hhhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046638 4 LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM 53 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 53 (306)
..+.+.|..+.+.++..-. +.++..-..+..++...|++++|.++|++.
T Consensus 820 ~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 820 EKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344555555555543333 334444445566777777777777777654
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.83 E-value=0.058 Score=37.58 Aligned_cols=31 Identities=6% Similarity=-0.007 Sum_probs=20.2
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcCC
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (306)
+.+.--.+..+|.+.+++++|+.+++.+..+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 4445555667777777777777777776543
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.81 E-value=0.036 Score=45.25 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh-----hcCCCCCCC
Q 046638 236 KALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY-----NRGIRKKPG 302 (306)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~ 302 (306)
..++..+...|+++++...++.+...+|-+...+..++.++.+.|+..+|++.|+++. +.|+.|.|.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3456666777888888888888777888777788888888888888888887777664 346666553
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.77 E-value=0.2 Score=34.30 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=25.1
Q ss_pred cCcchHHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCC
Q 046638 23 RTRNQISWNAIIAGFCNLGSG------EQALKCFSEMRQAGIDID 61 (306)
Q Consensus 23 ~~~~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~ 61 (306)
.+.|..+|-..+...-+.|+. ++..++|++.... ++|+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 345677777777776666777 7777777777664 4454
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.11 Score=46.03 Aligned_cols=122 Identities=11% Similarity=-0.012 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhH--HHHHHHhcccc-chhhHHHHHHHHHHc------CCC-ccH--
Q 046638 31 NAIIAGFCNLGS-GEQALKCFSEMRQAGIDIDYFTI--TSIVGAIGVIS-GFKEGKQMHALIFKI------GYD-SNV-- 97 (306)
Q Consensus 31 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~-~~~-- 97 (306)
..++..+...++ .+.|+.+|+++.+.. |...++ ..++..+...+ +--+|.+++.+.++. ..+ .+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555556666 588999999998864 443332 23333333333 233455555554431 111 111
Q ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 98 --------FVQNRLVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQM 154 (306)
Q Consensus 98 --------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 154 (306)
...+.-+..+...|+++-|+++-++... | +-.+|..|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1222334556778999999999999874 5 4679999999999999999999999887
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.48 E-value=0.31 Score=34.00 Aligned_cols=61 Identities=3% Similarity=-0.069 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCh-------hhHHHHHHHhccccchhhHHHHHHHHHH
Q 046638 30 WNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDY-------FTITSIVGAIGVISGFKEGKQMHALIFK 90 (306)
Q Consensus 30 ~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 90 (306)
+-.-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...+++.+|...|++.++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3344566777778888777776654321 12331 2445566677777888888888877643
No 245
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.94 E-value=0.51 Score=31.75 Aligned_cols=139 Identities=9% Similarity=-0.030 Sum_probs=74.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHH
Q 046638 37 FCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116 (306)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 116 (306)
+.-.|..++..++..+.... .+..-|+-+|.-....-+-+-..+.++..-+. -|. ..+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 44566677777777666653 23444444444433333433333333333221 111 223333333
Q ss_pred HHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 046638 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193 (306)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (306)
...+-.+. .+....+..+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.+.-+.|
T Consensus 81 i~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 81 VECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33333332 2333445556666777777777777777533 234556666677777777777777777777766655
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=1.4 Score=36.55 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=32.3
Q ss_pred ccchhhHHHHHHHHHHc-----CCCccHHHHHHHHHHHHhcCChHHHHHHHHhcC
Q 046638 75 ISGFKEGKQMHALIFKI-----GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124 (306)
Q Consensus 75 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 124 (306)
.++++.|.+.+-.+.+. +...+......++..|...|+++...+.+.-+.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 36777777776665542 233345667777777888888877766655444
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.74 E-value=1.2 Score=35.17 Aligned_cols=170 Identities=11% Similarity=0.064 Sum_probs=93.2
Q ss_pred hhhcCCh---HHHHhhhhhccCc-----c-hHH---HHHHHHHHHhcCChHHHHHHH----HHHHHcCCCCChhhHHHHH
Q 046638 6 YSRCDSS---LDFQNVYSSVRTR-----N-QIS---WNAIIAGFCNLGSGEQALKCF----SEMRQAGIDIDYFTITSIV 69 (306)
Q Consensus 6 ~~~~g~~---~~A~~~~~~~~~~-----~-~~~---~~~li~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~ 69 (306)
-...|++ =+|.+.++.+-.+ + ..+ ...-...+.+.|+...|-++. +.+.+.++++|......++
T Consensus 22 ~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3455666 5666666654221 1 111 112223466677776665554 5556677888888888888
Q ss_pred HHhccccchh-hHHHHHHHHH----HcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcC
Q 046638 70 GAIGVISGFK-EGKQMHALIF----KIG--YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142 (306)
Q Consensus 70 ~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 142 (306)
..+.....-+ .=.++.++++ +.| ..-|+.....+...|.+.+++.+|...|---.++....+..++.-+...+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 8776554311 1233444433 223 34467888888999999999999988874322223345544433332222
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 046638 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190 (306)
Q Consensus 143 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (306)
... .++... ...+--|.-.++...|..+++...
T Consensus 182 ~~~--------------e~dlfi-aRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 182 ESH--------------TAPLYC-ARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp CGG--------------GHHHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCc--------------cHHHHH-HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 211 112222 222334556778888877665544
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.74 E-value=0.6 Score=31.62 Aligned_cols=73 Identities=10% Similarity=0.052 Sum_probs=55.1
Q ss_pred CCcHhHHHHHHHHHhccCCh---HHHHHHHHHhcCC-CC-h-hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHH
Q 046638 197 PPRAEHYTAIVGLLGRAGFL---NEAESFINSMSRN-PG-P-SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIY 269 (306)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~-~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 269 (306)
.|+..+-..+..++.+..+. .+++.+++.+... |. . ...-.+.-++.+.|++++|.++.+.+++..|++..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 45888888888888887764 4678888887652 32 2 3344456678999999999999999999999876544
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.38 E-value=1.4 Score=34.45 Aligned_cols=169 Identities=9% Similarity=0.057 Sum_probs=86.0
Q ss_pred hhcCChHHHHhhhhhccCc-----c-hH---HHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCChhhHHHHHHHhc
Q 046638 7 SRCDSSLDFQNVYSSVRTR-----N-QI---SWNAIIAGFCNLGSGEQALKC----FSEMRQAGIDIDYFTITSIVGAIG 73 (306)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~-----~-~~---~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~ 73 (306)
...|++=+|.+.++.+-.+ + .. ....-...+.+.|+...|-++ .+.+.+.+.+++......++..+.
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred hhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456666666666654211 1 11 111222345566776665554 344455677777777777777665
Q ss_pred cccch-hhHHHHHHHHHH----cC--CCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhc---CC
Q 046638 74 VISGF-KEGKQMHALIFK----IG--YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH---GY 143 (306)
Q Consensus 74 ~~~~~-~~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 143 (306)
....- ..-.++++++++ .| ..-++..+..+...|.+.|++.+|...|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 43211 122344444432 22 2236677778888888888888887766533322333333333222222 22
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 046638 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190 (306)
Q Consensus 144 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (306)
..++ +.. ....+--|.-.|+...|..+++...
T Consensus 184 ~~e~--------------dlf-~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTV--------------AEF-FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHH--------------HHH-HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cchH--------------HHH-HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2221 111 1122224456678888888777654
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.37 E-value=0.41 Score=30.13 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHH
Q 046638 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209 (306)
Q Consensus 143 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (306)
+.-+...-++.+...++.|+.....+.+.+|.+.+++..|.++++-++...+. ...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~---~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP---HKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---CTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC---chhhHHHHHHH
Confidence 45566777777877888888888888999999999999999999888776542 34456666653
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.33 E-value=1.8 Score=35.27 Aligned_cols=279 Identities=9% Similarity=-0.004 Sum_probs=154.5
Q ss_pred chhhhhhcCChHHHHhhhhhccC--------cchHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCChhhHH------
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRT--------RNQISWNAIIAGFCNL-GSGEQALKCFSEMRQAGIDIDYFTIT------ 66 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~------ 66 (306)
|...|.+.|+.++..+++....+ .....-..++..+... +..+.-.++..+..+.. .-+..+|-
T Consensus 25 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l~~ 103 (394)
T 3txn_A 25 QGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 46788999999999998887643 2455667788877664 44444455555544321 11223441
Q ss_pred HHHHHhccccchhhHHHHHHHHHHcCCC-----ccHHHHHHHHHHHHhcCChHHHHHHHHhcCc------CCchhH----
Q 046638 67 SIVGAIGVISGFKEGKQMHALIFKIGYD-----SNVFVQNRLVFMYAICGAINDANKVFSSMDE------RDLVSW---- 131 (306)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~---- 131 (306)
.++..|...|++.+|.+++..+.+.--. .-..++-.-+..|...+++.++...+..... +++..-
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4677888999999999988888763111 1234556667788899999999988877652 222111
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHhc--CC-Cc---cHHHHHHHHHHHHccCChHHHHHHHH-HHHhcCCCCCCcHhHH
Q 046638 132 NSLLLGCA-HHGYSREAVQLFEQMQKT--EI-KP---DGTTFLVVLSACCHAGFIDKGLQYFY-LMRNDASLEPPRAEHY 203 (306)
Q Consensus 132 ~~l~~~~~-~~~~~~~a~~~~~~m~~~--~~-~p---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ 203 (306)
..-+..+. ..++|..|...|-+.... .. .| +...|..+ .+... ++..+...++. ...... ..|....+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~--~~pei~~l 259 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITY--SGRDIDAM 259 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTT--CSHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhcccccccc--CCccHHHH
Confidence 11223455 789999998888766421 11 12 12233222 22222 22222222221 111111 22466666
Q ss_pred HHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCchHHHHHHHHHHhhc
Q 046638 204 TAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKAT 279 (306)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~ 279 (306)
..++.+| ..+++.+...+++..... .|+..... +..+. .++..+.+. ..|-....+..++..+.-
T Consensus 260 ~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h-~~~L~--------~~Ir~~~L~~i~~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 260 KSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAH-LGTLY--------DTMLEQNLCRIIEPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHH-HHHHH--------HHHHHHHHHHHHTTCSEEEHHHHHHHHTC-
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHH-HHHHH--------HHHHHHHHHHHhHhhceeeHHHHHHHHCc-
Confidence 6677665 456777777777765442 33321111 11000 011111111 345455566666666654
Q ss_pred CChhhHHHHHHHHhhcCC
Q 046638 280 DCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 280 g~~~~a~~~~~~m~~~~~ 297 (306)
..++++..+-+|...|.
T Consensus 329 -s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 -PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -CHHHHHHHHHHHHHTTS
T ss_pred -CHHHHHHHHHHHHHCCC
Confidence 56788888888876654
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.20 E-value=0.81 Score=34.79 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=71.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCCh
Q 046638 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL 216 (306)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (306)
.+.+.|++++|++....-++..+. |...-..++..+|-.|+++.|.+-++...+......|....|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 456778888888888777776544 666777788888888888888888877766442111122233333332
Q ss_pred HHHH-HHHHHhcCC----CChhhHHHHHHHH--HhcCCHHHHHHHHHHHhhcCCCc
Q 046638 217 NEAE-SFINSMSRN----PGPSVYKALLSAC--QVHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 217 ~~a~-~~~~~~~~~----~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
+... ++|..-... ....-...++.+. ...|+.++|.++-.++.+..|..
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1111 122111111 1122234455553 44688888888888888766643
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.72 E-value=1 Score=30.47 Aligned_cols=66 Identities=9% Similarity=0.010 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHHHccCCh---HHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 161 PDGTTFLVVLSACCHAGFI---DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
|+..+--....++.++.+. .+++.+++.+.+.... ......-.|.-++.+.|++++|.+..+.+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444433444455544433 3455555555543321 1333444555566666666666666666554
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.64 E-value=0.42 Score=31.89 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=53.1
Q ss_pred CcHhHHHHHHHHHhccCCh---HHHHHHHHHhcCC-CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHH
Q 046638 198 PRAEHYTAIVGLLGRAGFL---NEAESFINSMSRN-PG--PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIY 269 (306)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 269 (306)
|++.+-..++.++.+..+. .+++.+++.+... |. ...+-.+.-++.+.|++++|.++.+.+++..|++..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 4777777788888877654 4678888777642 31 23444566678899999999999999999999876544
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.56 E-value=5.1 Score=37.87 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=81.0
Q ss_pred HHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcC---------------------
Q 046638 68 IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER--------------------- 126 (306)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------------- 126 (306)
++..+...+.++.+..+..- .+.+......++.+|...|++++|...|++....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 33444455555544443221 2234444456777888889999999888876420
Q ss_pred -----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Cc-c--HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 046638 127 -----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI-KP-D--GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197 (306)
Q Consensus 127 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 197 (306)
-..-|..++..+-+.+.++.+.++-+...+... .+ + ...|..+.+++...|++++|...+-.+.....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--- 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--- 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS---
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH---
Confidence 001255666677777777777766665554321 11 1 12456677777777777777777765544321
Q ss_pred CcHhHHHHHHHHHhccCChHH
Q 046638 198 PRAEHYTAIVGLLGRAGFLNE 218 (306)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~ 218 (306)
.......|+...+..|..+.
T Consensus 970 -r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHHhCCChhh
Confidence 34455666665565554433
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.55 E-value=0.45 Score=31.78 Aligned_cols=67 Identities=9% Similarity=0.011 Sum_probs=38.3
Q ss_pred CccHHHHHHHHHHHHccCCh---HHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 160 KPDGTTFLVVLSACCHAGFI---DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
.|+..|--...-++.++.+. .+++.+++.+.+.+.. .....+-.|.-++.+.|++++|.+..+.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~--~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444555555443 3566666666654311 1345555666677777777777777777665
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.51 E-value=2.6 Score=34.32 Aligned_cols=166 Identities=14% Similarity=-0.016 Sum_probs=104.5
Q ss_pred hhhHHHHHHHhccccchhhHHHHHHHHHHcC--C--CccHHHHHHHHHHHHhcC-ChHHHHHHHHhcCc---CCchhH--
Q 046638 62 YFTITSIVGAIGVISGFKEGKQMHALIFKIG--Y--DSNVFVQNRLVFMYAICG-AINDANKVFSSMDE---RDLVSW-- 131 (306)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~-- 131 (306)
......|...|.+.|+.++..+++......- + .........+++.+.... ..+.-.++..+..+ ..-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888889999988888887754321 1 113345667788777653 34555555555543 222233
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-----HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC--CCCcH
Q 046638 132 ----NSLLLGCAHHGYSREAVQLFEQMQKTEIKPD-----GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL--EPPRA 200 (306)
Q Consensus 132 ----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 200 (306)
..++..|...|++.+|..++.++.+.=...| ...+..-+..|...+++.++...+......... .||..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2578889999999999999988876311111 234556667788899999999999877643321 22222
Q ss_pred hHHH--HHHHHHh-ccCChHHHHHHHHHhc
Q 046638 201 EHYT--AIVGLLG-RAGFLNEAESFINSMS 227 (306)
Q Consensus 201 ~~~~--~l~~~~~-~~~~~~~a~~~~~~~~ 227 (306)
.... .-+..+. ..+++..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2221 1223455 7889999988776653
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.50 E-value=0.49 Score=38.53 Aligned_cols=65 Identities=8% Similarity=-0.011 Sum_probs=34.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHH-----cCCCccHHH
Q 046638 34 IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK-----IGYDSNVFV 99 (306)
Q Consensus 34 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 99 (306)
+..+...|++++++..+..+.... +.+...+..++.++.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344455566666665555555442 23445555566666666666666655555432 355555443
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.58 E-value=1 Score=30.11 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHH
Q 046638 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209 (306)
Q Consensus 143 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (306)
|.-+...-++.+...++.|+.......+.+|.+.+++..|.++|+-++...+. ...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~---~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP---HKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---CTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---chhhHHHHHHH
Confidence 34456777778888888999999999999999999999999999988876542 34567766653
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=92.44 E-value=0.71 Score=28.90 Aligned_cols=51 Identities=10% Similarity=-0.196 Sum_probs=31.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcC
Q 046638 36 GFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIG 92 (306)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 92 (306)
.+...|++++|..+.+.+ ..||...|..|-. .+.|-.+++...+..+...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 466677777776655443 3566666655543 35666666666666666655
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.36 E-value=1.3 Score=36.65 Aligned_cols=96 Identities=9% Similarity=-0.087 Sum_probs=58.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC----CCChhhHHHH--
Q 046638 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR----NPGPSVYKAL-- 238 (306)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~l-- 238 (306)
+...+...|.+.|+++.|.+.+.++.........-...+..++..+...+++..+...+.++.. .++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566777777777777777777777664433233456666777777777777777777776643 1222221111
Q ss_pred --HHHHHhcCCHHHHHHHHHHHhh
Q 046638 239 --LSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 239 --~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
+..+...+++..|...|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1113446677777777776665
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.27 E-value=3.3 Score=32.40 Aligned_cols=169 Identities=12% Similarity=0.022 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHH----HHHHHhcCCCccHHHHHHHHHHHH
Q 046638 99 VQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL----FEQMQKTEIKPDGTTFLVVLSACC 174 (306)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~ 174 (306)
.|.++..=|.+.+++++|++++..- ...+.+.|+...|-++ ++...+.+.+++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455556677778888888775442 2334556666555543 455556678888877777777765
Q ss_pred ccCChH-HHHHHHHHHH----hcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhc---C
Q 046638 175 HAGFID-KGLQYFYLMR----NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH---G 246 (306)
Q Consensus 175 ~~~~~~-~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 246 (306)
.....+ .=.++.+++. +.+...-.++.....+...|.+.|++.+|..-|-.-. +.++..+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCC
Confidence 533211 1122222222 2222222478889999999999999999988775221 12345555555554443 4
Q ss_pred CHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 247 NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 247 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
...++--+ ....+--|...|+...|..+++...
T Consensus 183 ~~~e~dlf--------------~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAEF--------------FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHHH--------------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHHH--------------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33332111 1222334556677888887777654
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.13 E-value=0.8 Score=28.73 Aligned_cols=82 Identities=9% Similarity=-0.068 Sum_probs=49.4
Q ss_pred ChHHHHhhhhhcc-CcchHHHHHHH--HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHH
Q 046638 11 SSLDFQNVYSSVR-TRNQISWNAII--AGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87 (306)
Q Consensus 11 ~~~~A~~~~~~~~-~~~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (306)
+-++|..+-+-+. .++ .-.-.+| ..+...|++++|..+.+.+ ..||...|..|-. .+.|-.+++...+..
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 3455555554432 223 3333344 4577888888888776554 3678777766644 367777777777777
Q ss_pred HHHcCCCccHHHH
Q 046638 88 IFKIGYDSNVFVQ 100 (306)
Q Consensus 88 ~~~~~~~~~~~~~ 100 (306)
+...| .|....|
T Consensus 95 la~sg-~p~~q~F 106 (116)
T 2p58_C 95 LARSQ-DPRIQTF 106 (116)
T ss_dssp HTTCC-CHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 77666 3444444
No 264
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.85 E-value=6.2 Score=32.75 Aligned_cols=188 Identities=10% Similarity=0.040 Sum_probs=116.1
Q ss_pred CChHHHHHHHHHHHHc-----CCCCChhhHHHHHHHhccccchhhHHHHHHHHHHc-CCCccHHH--HHHHHHHHHhcCC
Q 046638 41 GSGEQALKCFSEMRQA-----GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFV--QNRLVFMYAICGA 112 (306)
Q Consensus 41 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--~~~l~~~~~~~g~ 112 (306)
|+++.|++.+..+.+. +..........++..|...++++...+.+..+.+. |..+...+ .+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6677888777666542 23334556777888888888888887777665543 32222211 1222232333333
Q ss_pred hH--HHHHHHHhcCc---C-------CchhHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCcc---HHHHHHHHHHHHc
Q 046638 113 IN--DANKVFSSMDE---R-------DLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPD---GTTFLVVLSACCH 175 (306)
Q Consensus 113 ~~--~a~~~~~~~~~---~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~p~---~~~~~~l~~~~~~ 175 (306)
.+ .-..+.+.... . .......|...+...|++.+|..++.++.. .|..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22233333321 1 112345688889999999999999999853 232222 2456677888999
Q ss_pred cCChHHHHHHHHHHHhcC--CCCCCc--HhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 176 AGFIDKGLQYFYLMRNDA--SLEPPR--AEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~--~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
.+++..|..++.++.... ...+|. ...+...+..+...+++.+|.+.|.++..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999998864311 111222 24566777888889999999988887754
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.74 E-value=5.2 Score=31.64 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHH----HHHHhcCCCccHHHHHHHHHHHH
Q 046638 99 VQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF----EQMQKTEIKPDGTTFLVVLSACC 174 (306)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~l~~~~~ 174 (306)
+|.++..=|.+.+++++|++++..- ...+.+.|+...|-++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455566688888999988875442 23345556655554433 45556777888877777777776
Q ss_pred ccCChHHH-HHHHHHHH----hcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 046638 175 HAGFIDKG-LQYFYLMR----NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249 (306)
Q Consensus 175 ~~~~~~~a-~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (306)
....-+.. .++.+++. +.+.....++.....+...|.+.+++.+|+.-|- ...++++..+..++..+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 55432111 11222221 1222223478888999999999999999998873 2223344666666655544443
Q ss_pred HHHHHHHHHhhcCCCchHHH-HHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 250 IAVRSAKRVLDLWPNDPAIY-VLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 250 ~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
|.....| ...+--|...++...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2222222 2334456667788888877666553
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.51 E-value=3.8 Score=29.67 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=17.5
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHH
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 241 (306)
+..+-...+.++.+.+. .++...+..+...++...-...+.+
T Consensus 156 ~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d~~~~vr~~A~~a 197 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG-ERVRAAMEKLAETGTGFARKVAVNY 197 (211)
T ss_dssp SHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34444444445544443 3344444444333444333333333
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.24 E-value=0.98 Score=34.32 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=43.8
Q ss_pred HHHhccCChHHHHHHHHHhcC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 046638 208 GLLGRAGFLNEAESFINSMSR-NPG-PSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
..+.+.|++++|+.....-.+ +|. ...-..++..++-.|++++|.+-++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345678888888887765544 444 4455667888899999999999999988888864
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.09 E-value=3.5 Score=34.06 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHhccccchhhHHHHHHHHHHc---CCCccHHH--H
Q 046638 28 ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYFTITSIVGAIGVISGFKEGKQMHALIFKI---GYDSNVFV--Q 100 (306)
Q Consensus 28 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 100 (306)
.++..+...|.+.|+++.|.++|.++......+ -...+-.+++.+...+++..+...+.++... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356678888999999999999999987753323 3456777888888999999999999887642 33333221 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcC
Q 046638 101 NRLVFMYAICGAINDANKVFSSMD 124 (306)
Q Consensus 101 ~~l~~~~~~~g~~~~a~~~~~~~~ 124 (306)
..-+..+...+++..|.+.|-+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 112223455688999988887764
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.02 E-value=2.4 Score=26.61 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=60.8
Q ss_pred cchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046638 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155 (306)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 155 (306)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346777777777666543 22222233456778899999999999888899998877655 47788888888888887
Q ss_pred hcCCCccHHHHH
Q 046638 156 KTEIKPDGTTFL 167 (306)
Q Consensus 156 ~~~~~p~~~~~~ 167 (306)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 34555554
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.66 E-value=2.6 Score=26.50 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=60.2
Q ss_pred cchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046638 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155 (306)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 155 (306)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346777777777666543 22222233456778899999999999999999998877765 46778888888887776
Q ss_pred hcCCCccHHHHH
Q 046638 156 KTEIKPDGTTFL 167 (306)
Q Consensus 156 ~~~~~p~~~~~~ 167 (306)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 34555554
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.41 E-value=1.1 Score=29.87 Aligned_cols=57 Identities=4% Similarity=-0.013 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHH
Q 046638 80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLL 136 (306)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~ 136 (306)
+..+-++.+...++-|++.+....+.+|.+.+|+.-|..+|+.++. +....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3445555555666667777777777777777777777777776652 33344555543
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.43 E-value=6.5 Score=28.41 Aligned_cols=47 Identities=11% Similarity=-0.081 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 214 GFLNEAESFINSMSRN----PGPSVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 214 ~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
+...++.++|..|..+ .-+..|......+-..|++.+|..+|+..++
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555432 2333455555555666666666666666665
No 273
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.59 E-value=6.4 Score=24.86 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=31.9
Q ss_pred HHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHH
Q 046638 218 EAESFINSMSR---NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLS 273 (306)
Q Consensus 218 ~a~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 273 (306)
+..+-++.+.. -|++....+.+.+|.+.+++..|.++++-+.....+...+|-.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 44444444443 266666666677777777777777777666654433333444433
No 274
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=80.63 E-value=16 Score=27.60 Aligned_cols=222 Identities=12% Similarity=0.000 Sum_probs=101.5
Q ss_pred cCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhh----HHHHHHHHHHcCCCccHH
Q 046638 23 RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE----GKQMHALIFKIGYDSNVF 98 (306)
Q Consensus 23 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~ 98 (306)
..++...-...+.++...|. ..+...+..+... ++...-...+.++.+.+.... ...++..+... .++..
T Consensus 33 ~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~ 106 (280)
T 1oyz_A 33 DDHNSLKRISSARVLQLRGG-QDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSAC 106 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHH
T ss_pred HcCCHHHHHHHHHHHHccCC-chHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHH
Confidence 34555544445555555554 3455555555542 455544555555555553222 22233322122 24555
Q ss_pred HHHHHHHHHHhcCC-----hHHHHHHHHhc-CcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 046638 99 VQNRLVFMYAICGA-----INDANKVFSSM-DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172 (306)
Q Consensus 99 ~~~~l~~~~~~~g~-----~~~a~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 172 (306)
+....+.++...|. ...+...+... ..++..+-...+.++...|+. .+...+.++... ++...-...+.+
T Consensus 107 vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~a~~a 182 (280)
T 1oyz_A 107 VRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK-ATIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHTC---SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 55555555555441 23444444333 346665555666666666653 244444444332 344444444455
Q ss_pred HHccC-ChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 046638 173 CCHAG-FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251 (306)
Q Consensus 173 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (306)
+...| ....+...+..+..+ ++..+-...+.++.+.|+.+..-.+... ...++ .-...+.++...|+ ..+
T Consensus 183 L~~~~~~~~~~~~~L~~~l~d-----~~~~vR~~A~~aL~~~~~~~~~~~L~~~-l~d~~--vr~~a~~aL~~i~~-~~~ 253 (280)
T 1oyz_A 183 ININKYDNSDIRDCFVEMLQD-----KNEEVRIEAIIGLSYRKDKRVLSVLCDE-LKKNT--VYDDIIEAAGELGD-KTL 253 (280)
T ss_dssp HHHHTCCCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHTTCGGGHHHHHHH-HTSSS--CCHHHHHHHHHHCC-GGG
T ss_pred HHhhccCcHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHhCCHhhHHHHHHH-hcCcc--HHHHHHHHHHhcCc-hhh
Confidence 55444 123344444333321 2555556666666666654433333333 33333 22333455555555 344
Q ss_pred HHHHHHHhhcCC
Q 046638 252 VRSAKRVLDLWP 263 (306)
Q Consensus 252 ~~~~~~~~~~~p 263 (306)
...+.+++...+
T Consensus 254 ~~~L~~~l~~~~ 265 (280)
T 1oyz_A 254 LPVLDTMLYKFD 265 (280)
T ss_dssp HHHHHHHHTTSS
T ss_pred hHHHHHHHhcCC
Confidence 555555554333
No 275
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.67 E-value=13 Score=31.41 Aligned_cols=124 Identities=10% Similarity=0.105 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--hhHH-HHHHHhccccchhhHHHHHHHHHHcCCCcc------
Q 046638 27 QISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DIDY--FTIT-SIVGAIGVISGFKEGKQMHALIFKIGYDSN------ 96 (306)
Q Consensus 27 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------ 96 (306)
...+|.+++.|...+.+++|..+..+..--.. .++. ..|. .+...+.-.+++.+|.+.+..+...-+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence 55688888999999999999988887631000 0111 2222 233455667888888888888776533211
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcC-cCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 046638 97 VFVQNRLVFMYAICGAINDANKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFE 152 (306)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 152 (306)
..++..++-+-.-.|++.+ ..+|.+-. ++....|..|..++ +.|+.+.-...++
T Consensus 311 ~~a~K~lI~V~LLlG~iP~-r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~ 365 (523)
T 4b4t_S 311 QQSNKLHCCIQLLMGDIPE-LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTIT 365 (523)
T ss_dssp HHHHHHHHHHHHHHTCCCC-HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHH
T ss_pred HHHHHHHHhHHhhcCCCCC-hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 1122222222222466543 22232211 12234566666665 5577665444443
No 276
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=79.20 E-value=10 Score=26.04 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=11.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 046638 32 AIIAGFCNLGSGEQALKCFSEM 53 (306)
Q Consensus 32 ~li~~~~~~~~~~~a~~~~~~~ 53 (306)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444555555555555555554
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=78.90 E-value=13 Score=25.47 Aligned_cols=49 Identities=6% Similarity=-0.006 Sum_probs=27.6
Q ss_pred HHHHHHHHhh--cCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCC
Q 046638 251 AVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299 (306)
Q Consensus 251 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 299 (306)
+.++|..+.. ++-.....|...+..+...|++++|.++|+.-++++-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5556665555 333345556666666666666666666665555444433
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=78.26 E-value=13 Score=25.84 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
.|......+-..|++.+|.++|+..++
T Consensus 98 fY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 98 FYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555555555555555
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=76.94 E-value=14 Score=24.55 Aligned_cols=22 Identities=5% Similarity=0.104 Sum_probs=11.1
Q ss_pred hhhhhhcCChHHHHhhhhhccC
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRT 24 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~ 24 (306)
+.=|...|+.++|.+.++.+..
T Consensus 14 l~EY~~~~D~~Ea~~cl~eL~~ 35 (129)
T 2nsz_A 14 LKEYLLSGDISEAEHCLKELEV 35 (129)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHHHhCC
Confidence 3344445555555555555543
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=75.80 E-value=22 Score=26.46 Aligned_cols=88 Identities=8% Similarity=-0.062 Sum_probs=45.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc--CCCC----ChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHH
Q 046638 33 IIAGFCNLGSGEQALKCFSEMRQA--GIDI----DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFM 106 (306)
Q Consensus 33 li~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (306)
-++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 567888999999999999876542 2221 1112222222222222223333333333 22 3344445555566
Q ss_pred HHhcCChHHHHHHHHhc
Q 046638 107 YAICGAINDANKVFSSM 123 (306)
Q Consensus 107 ~~~~g~~~~a~~~~~~~ 123 (306)
+.+.|+-++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 66667777666666544
No 281
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.21 E-value=41 Score=31.09 Aligned_cols=85 Identities=7% Similarity=-0.169 Sum_probs=48.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC---CC--------------
Q 046638 169 VLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN---PG-------------- 231 (306)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-------------- 231 (306)
++..|...|..+-+.++..- .|.++..--.++.+|...|++++|.+.|++.-.. ++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccC
Confidence 44555566666554443211 1224444445677778888888888888776421 00
Q ss_pred --------hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 232 --------PSVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 232 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
..-|..++..+-+.+-++-+.++.+.+++
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 01345555556666666666666666665
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=72.11 E-value=17 Score=26.73 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 046638 218 EAESFINSMSRN----PGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261 (306)
Q Consensus 218 ~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (306)
.+.++|..|..+ .....|......+-..|++.+|..+|+..++.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 445555555432 33445666666666777777777777777763
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.83 E-value=48 Score=30.66 Aligned_cols=124 Identities=10% Similarity=-0.057 Sum_probs=59.3
Q ss_pred hhhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHH
Q 046638 4 LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (306)
..+...|..+-|.++..-.+. ++..-..+..+|...|++++|..+|++.- .|+..+...... ......
T Consensus 818 ~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~~~ 885 (950)
T 4gq2_M 818 EKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREFQE 885 (950)
T ss_dssp HHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHHHH
T ss_pred HHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhhhh
Confidence 344555666666554443433 44433456667777777777777776642 222211110000 000000
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc----CCc----hhHHHHHHHHHhc
Q 046638 84 MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE----RDL----VSWNSLLLGCAHH 141 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~ 141 (306)
++... +. ......-|..++..+-+.+-++-+.++-+...+ .|. ..|+.+..+.+..
T Consensus 886 ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 886 IAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 00000 00 011223566777777777877777766655442 122 2455566555543
No 284
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=70.17 E-value=15 Score=25.25 Aligned_cols=57 Identities=9% Similarity=0.165 Sum_probs=27.3
Q ss_pred chhhhhhcCChHHHHhhhhhccCcc---hHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCC
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRTRN---QISWNAIIAGFCNLGS--GEQALKCFSEMRQAGI 58 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~ 58 (306)
++.=|...|+.++|.+.++.+..|. ......+..++-+.++ .+.+..++..+.+.++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 3445566666677766666665442 2223333333333221 3344555555554443
No 285
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=69.56 E-value=7.8 Score=24.18 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=15.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccc
Q 046638 42 SGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77 (306)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 77 (306)
+.++|.+++..+...|. .+|..++.++...++
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCc
Confidence 45555555555544431 345555555544343
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.66 E-value=24 Score=26.41 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=9.3
Q ss_pred HHHHHHhhcCCCCCCCC
Q 046638 287 DIRTLMYNRGIRKKPGY 303 (306)
Q Consensus 287 ~~~~~m~~~~~~~~~~~ 303 (306)
++.+.+.+.|..++..-
T Consensus 267 ~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 267 KIAELLCKRGASTDCGD 283 (285)
T ss_dssp HHHHHHHHHSSCSCCSS
T ss_pred HHHHHHHHcCCCCCccc
Confidence 34444556676666543
No 287
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=67.45 E-value=30 Score=24.42 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHH
Q 046638 164 TTFLVVLSACCHAGFIDKGLQYFYLM 189 (306)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (306)
..++.+...|.+.|+.++|+..+..-
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 34555666666777777777766543
No 288
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=67.33 E-value=16 Score=26.65 Aligned_cols=51 Identities=10% Similarity=0.168 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHhHHH-----HHHHHHhccCChHHHHHHHHHhcCC
Q 046638 179 IDKGLQYFYLMRNDASLEPPRAEHYT-----AIVGLLGRAGFLNEAESFINSMSRN 229 (306)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (306)
.+.|+-+|+.+.+...+..+-..... ..+-.|.+.|.+++|.+++++...+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 57788888888776643221111111 2234567778888888888877764
No 289
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.26 E-value=36 Score=24.59 Aligned_cols=53 Identities=15% Similarity=0.065 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHcCCCCCh-hhHHHHHHHhccccchhhHHHHHHHHHHcCCCc
Q 046638 43 GEQALKCFSEMRQAGIDIDY-FTITSIVGAIGVISGFKEGKQMHALIFKIGYDS 95 (306)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 95 (306)
...+.++|..|...|+--.. .-|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555566665555543332 233444444555556666666666555555554
No 290
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.18 E-value=35 Score=24.36 Aligned_cols=154 Identities=13% Similarity=0.036 Sum_probs=89.9
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 046638 95 SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174 (306)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 174 (306)
++..+-...+..+.+.|+.+..-.+.+.+..++...-...+.++.+.++. ++...+.++.. .++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34555555555666666644444444445556665555566666666653 33344444432 345555666677777
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 046638 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254 (306)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 254 (306)
+.++.+.. ..+..+.. .++..+-...+.++.+.|..+ +...+..+...++...-...+.++...+. .++...
T Consensus 107 ~~~~~~~~-~~L~~~l~-----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~ 178 (211)
T 3ltm_A 107 QIGDERAV-EPLIKALK-----DEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAA 178 (211)
T ss_dssp HHCCGGGH-HHHHHHTT-----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHH
T ss_pred HhCcHHHH-HHHHHHHh-----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHH
Confidence 77775433 33333332 136666777777787777654 55555666666777776777777777776 455666
Q ss_pred HHHHhh
Q 046638 255 AKRVLD 260 (306)
Q Consensus 255 ~~~~~~ 260 (306)
+.++++
T Consensus 179 L~~~l~ 184 (211)
T 3ltm_A 179 MEKLAE 184 (211)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666655
No 291
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=64.86 E-value=26 Score=25.18 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=11.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhcC
Q 046638 241 ACQVHGNREIAVRSAKRVLDLW 262 (306)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~ 262 (306)
.|.+.|.+++|.+++++.....
T Consensus 126 VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHccchHHHHHHHHHHhcCC
Confidence 3555666666666666655433
No 292
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=64.17 E-value=38 Score=24.43 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=23.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 046638 39 NLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76 (306)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (306)
+..+.+.|+-++-+|++.| .|.-..-..++.+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4577777777777777777 555555555555554444
No 293
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.12 E-value=35 Score=24.08 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=10.6
Q ss_pred hhhccCcchHHHHHHHHHHHhcCC
Q 046638 19 YSSVRTRNQISWNAIIAGFCNLGS 42 (306)
Q Consensus 19 ~~~~~~~~~~~~~~li~~~~~~~~ 42 (306)
++.+..++...-...+.++...+.
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~ 43 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGD 43 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCC
Confidence 333444444444444444444443
No 294
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.74 E-value=55 Score=26.18 Aligned_cols=29 Identities=10% Similarity=0.252 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCcCC
Q 046638 99 VQNRLVFMYAICGAINDANKVFSSMDERD 127 (306)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 127 (306)
....++.=|...|+.++|...++++..|.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 34556777888888888888888887554
No 295
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=63.35 E-value=30 Score=25.25 Aligned_cols=49 Identities=8% Similarity=0.120 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCccH--HHHHHHHH-----HHHccCChHHHHHHHHHHHhc
Q 046638 144 SREAVQLFEQMQKTEIKPDG--TTFLVVLS-----ACCHAGFIDKGLQYFYLMRND 192 (306)
Q Consensus 144 ~~~a~~~~~~m~~~~~~p~~--~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~ 192 (306)
.+.|+.+|+.+.+.-..|+. .....++. .|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 78999999999776433222 23344433 578899999999999998754
No 296
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=63.27 E-value=27 Score=23.59 Aligned_cols=23 Identities=4% Similarity=-0.044 Sum_probs=10.4
Q ss_pred HHHHHccCChHHHHHHHHHHHhc
Q 046638 170 LSACCHAGFIDKGLQYFYLMRND 192 (306)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~ 192 (306)
+..+...+..-.|.++++.+.+.
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~ 50 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGK 50 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGG
T ss_pred HHHHHhCCCCCCHHHHHHHHHHh
Confidence 33333334444455555555443
No 297
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=62.43 E-value=36 Score=23.55 Aligned_cols=69 Identities=10% Similarity=0.118 Sum_probs=48.5
Q ss_pred HHHHHHHHH-HHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCCh
Q 046638 44 EQALKCFSE-MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKI--GYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 44 ~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
+.+++-+.+ +.+.|++++. .-..++..+...+..-.|.++++.+.+. ++..+..|...-+..+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 445554444 5667877755 3445566666777888999999999988 7777777777777777777753
No 298
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=62.33 E-value=8.2 Score=21.51 Aligned_cols=47 Identities=23% Similarity=0.208 Sum_probs=27.8
Q ss_pred HHHHHhhcCCC-chHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCC
Q 046638 254 SAKRVLDLWPN-DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302 (306)
Q Consensus 254 ~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 302 (306)
-.+.+.+..|+ +. ...-...-...|+++.|+..+-.|...+..|+.+
T Consensus 12 ~l~~L~emFP~ld~--~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~~ 59 (59)
T 1wgl_A 12 DLKAIQDMFPNMDQ--EVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSSG 59 (59)
T ss_dssp HHHHHHHHCSSSCH--HHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCCC
T ss_pred HHHHHHHHCCCCCH--HHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCCC
Confidence 33444455775 32 2222222345678888888888887777766653
No 299
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.29 E-value=46 Score=24.78 Aligned_cols=16 Identities=6% Similarity=-0.068 Sum_probs=7.5
Q ss_pred hhhcCChHHHHhhhhh
Q 046638 6 YSRCDSSLDFQNVYSS 21 (306)
Q Consensus 6 ~~~~g~~~~A~~~~~~ 21 (306)
.++.|+++....+++.
T Consensus 12 A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 12 AVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3444555444444444
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.18 E-value=31 Score=22.78 Aligned_cols=65 Identities=12% Similarity=0.262 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCcCCc---hhHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCccH
Q 046638 99 VQNRLVFMYAICGAINDANKVFSSMDERDL---VSWNSLLLGCAHHGY--SREAVQLFEQMQKTEIKPDG 163 (306)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 163 (306)
....++.=|...|+.++|...++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 345677788888999999999999886632 234444455555432 35677778888777655443
No 301
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=61.16 E-value=9.5 Score=21.23 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 046638 43 GEQALKCFSEMRQAGIDIDYFTITSIVGAI 72 (306)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (306)
.++|++.|.+|++..-.+..-||...+...
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 367888888887765556667888777766
No 302
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=61.04 E-value=43 Score=24.07 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=29.1
Q ss_pred HHHHH---HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 046638 33 IIAGF---CNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76 (306)
Q Consensus 33 li~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (306)
+|+++ .+..+.+.|+-++-+|++.|-.|.-..-..++.+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44444 345788888888888888876665555555555554444
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.03 E-value=32 Score=29.09 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcH---hHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 163 GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA---EHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
...++.+++.|...+.++.|..+..+..--... .++. ..+.-++..+.-.+++.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~-~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTD-VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCccc-CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345666667777777777777776665311000 0111 1112234555566677777776666554
No 304
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=60.41 E-value=42 Score=23.68 Aligned_cols=153 Identities=14% Similarity=0.036 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHc
Q 046638 96 NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175 (306)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 175 (306)
+..+....+..+.+.|+.+....+.+.+..++...-...+.++...+..+ +...+.++.. .++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 44444444444444444333334444444455544444555555555432 3333333332 2455555556666666
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 046638 176 AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255 (306)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (306)
.++.+....+ ..+.. .++..+-...+.++.+.+.. ++...+..+...++...-...+.++...|. +++...+
T Consensus 103 ~~~~~~~~~L-~~~l~-----d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L 174 (201)
T 3ltj_A 103 IGDERAVEPL-IKALK-----DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAM 174 (201)
T ss_dssp HCCGGGHHHH-HHHTT-----CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred hCcHHHHHHH-HHHHc-----CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 6664433333 33322 12555556666666666654 344445555555666655666666666665 3455555
Q ss_pred HHHhh
Q 046638 256 KRVLD 260 (306)
Q Consensus 256 ~~~~~ 260 (306)
..+++
T Consensus 175 ~~~l~ 179 (201)
T 3ltj_A 175 EKLAE 179 (201)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55553
No 305
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=60.38 E-value=52 Score=24.75 Aligned_cols=192 Identities=8% Similarity=0.003 Sum_probs=99.6
Q ss_pred hhccCcchHHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCChhhHHHHHHHhccccc-----hhhHHHHHHHHHH
Q 046638 20 SSVRTRNQISWNAIIAGFCNLGSG----EQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG-----FKEGKQMHALIFK 90 (306)
Q Consensus 20 ~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~ 90 (306)
+.+..++...-...+.++...|.. ...+.++..+... .++...-...+.++...+. .+.+...+..+..
T Consensus 61 ~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~ 138 (280)
T 1oyz_A 61 EFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF 138 (280)
T ss_dssp HHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh
Confidence 333445555555555666665532 2333344322222 2555555566666655542 2334444443333
Q ss_pred cCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCccHHHHHHH
Q 046638 91 IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG-YSREAVQLFEQMQKTEIKPDGTTFLVV 169 (306)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l 169 (306)
.++..+-...+.+....|+.+..-.+.+.+..++...-...+.++...+ +...+...+..+.. .++...-...
T Consensus 139 ---d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A 212 (280)
T 1oyz_A 139 ---DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEA 212 (280)
T ss_dssp ---CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHH
Confidence 4677777777778888777443334444445566666555666666554 23455666655543 3455666667
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 170 LSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
+.++.+.|+.+....+...+. .. ++ ....+.++.+.|.. ++...+.++..
T Consensus 213 ~~aL~~~~~~~~~~~L~~~l~-d~-----~v--r~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 213 IIGLSYRKDKRVLSVLCDELK-KN-----TV--YDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHTTCGGGHHHHHHHHT-SS-----SC--CHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred HHHHHHhCCHhhHHHHHHHhc-Cc-----cH--HHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 778888886554444444443 21 22 23345566666663 45555555543
No 306
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=59.88 E-value=91 Score=27.43 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=19.3
Q ss_pred CchhhhhhcCChHHHHhhhhhcc
Q 046638 1 LQILTYSRCDSSLDFQNVYSSVR 23 (306)
Q Consensus 1 ali~~~~~~g~~~~A~~~~~~~~ 23 (306)
++|-.|.|+|++++|.++.++..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTG
T ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Confidence 36778999999999999887753
No 307
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=58.48 E-value=26 Score=24.65 Aligned_cols=18 Identities=0% Similarity=0.060 Sum_probs=11.0
Q ss_pred hhhhcCChHHHHhhhhhc
Q 046638 5 TYSRCDSSLDFQNVYSSV 22 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~ 22 (306)
..+..|+.+....++...
T Consensus 11 ~A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHHTTCHHHHHHHHTCT
T ss_pred HHHHhccHHHHHHHHHcC
Confidence 345566666666666554
No 308
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.26 E-value=70 Score=25.59 Aligned_cols=79 Identities=9% Similarity=0.089 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC--hHHHHHHHHHHHhcCCCCCCcHhHHHHHHH
Q 046638 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF--IDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208 (306)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (306)
.+.++.=|...|+.++|...++++..-... .......+..++-+.++ .+...+++..+...+.+. .......+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls--~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT--IDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHH
Confidence 456677777778888888888777422111 22334444445444333 345666666666655442 3333444444
Q ss_pred HHhc
Q 046638 209 LLGR 212 (306)
Q Consensus 209 ~~~~ 212 (306)
.+..
T Consensus 297 vl~~ 300 (358)
T 3eiq_C 297 IYNE 300 (358)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 309
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.04 E-value=50 Score=24.54 Aligned_cols=90 Identities=8% Similarity=-0.041 Sum_probs=56.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--CCCc----cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHH
Q 046638 133 SLLLGCAHHGYSREAVQLFEQMQKT--EIKP----DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAI 206 (306)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 206 (306)
--+..+....++++|.+++++.... +.++ ........+..-.....-.-+..+.+.+.. .+.+......
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-----~~~~~~~r~~ 97 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-----SNEIVHLKSG 97 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSSHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCHHHHHHH
Confidence 3577888999999999999887542 2332 112223334444443444445555555532 1256666777
Q ss_pred HHHHhccCChHHHHHHHHHhc
Q 046638 207 VGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~ 227 (306)
+..+.+.|+.++|.++|-+..
T Consensus 98 v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHHH
Confidence 788899999999999987765
No 310
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=58.04 E-value=40 Score=22.72 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=40.7
Q ss_pred HHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 51 SEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34566777666532 33444444555 678999999998888777777776677777776643
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=57.70 E-value=24 Score=23.78 Aligned_cols=63 Identities=8% Similarity=0.052 Sum_probs=43.7
Q ss_pred HHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 046638 51 SEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114 (306)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 114 (306)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.++..+..|...-+..+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 34667777666533 3344455555667789999999988887777777777788888877543
No 312
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=57.48 E-value=47 Score=23.34 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=31.5
Q ss_pred hhhhcCChHHHHhhhhhccCc-chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 046638 5 TYSRCDSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 62 (306)
..++.|+++....+++.-... +...-.+.+...+..|+.+.-.++.+.+++.|..++.
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 345667777776666654321 1111123344445566666556666667777765554
No 313
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=56.38 E-value=60 Score=25.32 Aligned_cols=94 Identities=11% Similarity=0.118 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc--chhhHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 046638 30 WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS--GFKEGKQMHALIFKIGYDSNVFVQNRLVFMY 107 (306)
Q Consensus 30 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (306)
.+.++.-|...|+.++|.+.++++..... -...+...+..++-+.+ ..+.+.+++..+.+.|+-+.......+...+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 44566677777777777777777642111 01122333334444432 2455666777777666554444444444444
Q ss_pred HhcC----ChHHHHHHHHhcC
Q 046638 108 AICG----AINDANKVFSSMD 124 (306)
Q Consensus 108 ~~~g----~~~~a~~~~~~~~ 124 (306)
.... |...|..++.++.
T Consensus 248 ~~l~Dl~lDiP~A~~~la~~v 268 (307)
T 2zu6_B 248 NEIPDINLDVPHSYSVLERFV 268 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHH
T ss_pred HhccHhhcccccHHHHHHHHH
Confidence 4433 2345555555544
No 314
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=55.83 E-value=1.1e+02 Score=27.00 Aligned_cols=82 Identities=6% Similarity=-0.038 Sum_probs=37.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCC-CccHHHHHHHHHHHHh---
Q 046638 34 IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAI--- 109 (306)
Q Consensus 34 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~--- 109 (306)
...+.-.|+++.|++.+-.. ...|.+.+...+..+.-.+- -+.+..... .| ..-+..||..|.+
T Consensus 301 f~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcc-cccHHHHHHHHHHHhh
Confidence 34455667777777766533 22344444444433322221 011111100 11 1224556666654
Q ss_pred cCChHHHHHHHHhcCcCC
Q 046638 110 CGAINDANKVFSSMDERD 127 (306)
Q Consensus 110 ~g~~~~a~~~~~~~~~~~ 127 (306)
..+..+|.++|--+.-++
T Consensus 369 ~td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TTCHHHHHHHHHGGGGSC
T ss_pred cCCHHHHHHHHHHHhccC
Confidence 367888888777665443
No 315
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=55.83 E-value=56 Score=23.75 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=38.7
Q ss_pred HHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccc-----hhhHHHHHHHHHHcCC
Q 046638 29 SWNAIIAGFC---NLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG-----FKEGKQMHALIFKIGY 93 (306)
Q Consensus 29 ~~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 93 (306)
.+..+|+++. +..+.+.|+-++-+|++.|-.|.-..-..++.+....|. ...|...++.....|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3344555554 457888888888888888866666555666666555443 2233344444444443
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=55.72 E-value=38 Score=22.99 Aligned_cols=62 Identities=8% Similarity=0.055 Sum_probs=42.1
Q ss_pred HHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 51 SEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3456677665543 3344555555666788999999998888777777777778888887754
No 317
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=53.47 E-value=28 Score=21.32 Aligned_cols=33 Identities=9% Similarity=-0.080 Sum_probs=16.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 046638 40 LGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76 (306)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (306)
....++|..+++.+...| ...|..++.++.+.+
T Consensus 49 ~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~ 81 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEG 81 (94)
T ss_dssp SSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcC
Confidence 344555555555554332 344555555554443
No 318
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=52.90 E-value=31 Score=23.84 Aligned_cols=63 Identities=8% Similarity=0.143 Sum_probs=39.9
Q ss_pred HHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChhhHHHHHHHhccccc
Q 046638 15 FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA--GIDIDYFTITSIVGAIGVISG 77 (306)
Q Consensus 15 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 77 (306)
+.+.+..-.-+-+..-..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+.+.|-
T Consensus 20 ~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 20 FKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 333333333344555666777788888888999999999887 655566555545555555543
No 319
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=52.85 E-value=53 Score=27.69 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=35.2
Q ss_pred HHHHHhccCChHHHHHHHHHhcC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHh
Q 046638 206 IVGLLGRAGFLNEAESFINSMSR-NPG-PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSK 277 (306)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 277 (306)
|++...-...++.|...|.+... .|+ ...|+.|.-.....|+.-.|.-.|-+.+....+-+.+...|...+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 33333334445556666655543 233 2345555555555555555555555555433334455555554444
No 320
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=52.66 E-value=38 Score=22.66 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=34.6
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
..++..+...+..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345556666666778888888888887777777777677777777643
No 321
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=51.85 E-value=4 Score=26.59 Aligned_cols=69 Identities=4% Similarity=-0.220 Sum_probs=36.0
Q ss_pred hhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHH
Q 046638 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82 (306)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (306)
|.+.+++++++.+..+ ...|.-.|...+..++.+-|.++++-.++.| +...|...+-.|...=+++-++
T Consensus 16 ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 16 PRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp SSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred hhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 4445555555444332 1123334555556666666666666666554 4455555555555555554443
No 322
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=51.08 E-value=1.2e+02 Score=26.34 Aligned_cols=198 Identities=13% Similarity=-0.028 Sum_probs=103.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHH----HHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH
Q 046638 42 SGEQALKCFSEMRQAGIDIDYFTIT----SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117 (306)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 117 (306)
+.+.|...+....+.. ..+..... .+.......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777765543 22332222 22222333343455666666654433 23333333444445668888888
Q ss_pred HHHHhcCcC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 046638 118 KVFSSMDER---DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194 (306)
Q Consensus 118 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (306)
..|+.|... .....--+..++...|+.++|..+|+++... .+|..++ +..+.|..-.. ....
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~l-Aa~~Lg~~~~~--------~~~~ 370 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPMV-AAQRIGEEYEL--------KIDK 370 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHH-HHHHTTCCCCC--------CCCC
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHH-HHHHcCCCCCC--------CCCC
Confidence 888887652 1222334555667778888888888877531 1333333 22333321000 0000
Q ss_pred CCCCcH-----hHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046638 195 LEPPRA-----EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257 (306)
Q Consensus 195 ~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (306)
..+... ..-...+..+...|....|...+..+....+......+.......|..+.++....+
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 000000 011233456777888889988888877655544444455555667777777655544
No 323
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=50.62 E-value=33 Score=21.25 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=24.1
Q ss_pred ChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHH
Q 046638 112 AINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148 (306)
Q Consensus 112 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 148 (306)
+.+.|.++++.+..+...+|..++.++...|+..-|.
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 5666777777777766667777777776656554443
No 324
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.83 E-value=34 Score=25.97 Aligned_cols=233 Identities=9% Similarity=-0.001 Sum_probs=111.1
Q ss_pred hhcCChHHHHhhhhhc--cCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHH
Q 046638 7 SRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84 (306)
Q Consensus 7 ~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (306)
.+..+.++..+++..- ..+|..-++.| ...+..|+.+-+..+ .+.|..++...-.+.+...+..|+.+-+
T Consensus 7 i~~~~~~~v~~lL~~~~~~~~d~~g~t~L-~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v--- 78 (285)
T 3kea_A 7 INTWKSKQLKSFLSSKDTFKADVHGHSAS-YYAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIV--- 78 (285)
T ss_dssp GGGCCHHHHHHHHHSTTTTCCCTTSCCHH-HHHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHH---
T ss_pred HHhcCHHHHHHHHHhCCCCccCCCCCCHH-HHHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHH---
Confidence 3456666777776543 22333333333 344567777655444 4445444433223344445566776544
Q ss_pred HHHHHHcCCCccHHH--HHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046638 85 HALIFKIGYDSNVFV--QNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159 (306)
Q Consensus 85 ~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 159 (306)
+.+++.|..++... -.+.+...+..|+.+-+.-+++.-.. .+...+.+.+...+..|+.+-+. .+.+.|.
T Consensus 79 -~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~ 153 (285)
T 3kea_A 79 -KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIP 153 (285)
T ss_dssp -HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSC
T ss_pred -HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCC
Confidence 44455565443211 11234445667888777777776433 33333334445556667765443 3444444
Q ss_pred CccHH-HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHH
Q 046638 160 KPDGT-TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238 (306)
Q Consensus 160 ~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 238 (306)
.+... .-...+...+..|+.+-+..+++.-..-... +..-.+..+...+..|+.+-+.-+++.-. .++....
T Consensus 154 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~---~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga-d~~~~~~--- 226 (285)
T 3kea_A 154 STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN---NSLLFIPDIKLAIDNKDIEMLQALFKYDI-NIYSANL--- 226 (285)
T ss_dssp TTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT---CCCBCCTTHHHHHHHTCHHHHHHHTTSCB-CSTTTTG---
T ss_pred ccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc---cCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCCh---
Confidence 33111 2233444556778887776666553322211 11111111223334566665555555432 3332221
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc
Q 046638 239 LSACQVHGNREIAVRSAKRVLDL 261 (306)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~ 261 (306)
.-...|+.+-+.-+++.-.+.
T Consensus 227 --~a~~~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 227 --ENVLLDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp --GGGTTTCHHHHHHHHHHHHHH
T ss_pred --hhhhcCCHHHHHHHHHcCCCC
Confidence 113355555555555554443
No 325
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.59 E-value=38 Score=19.91 Aligned_cols=61 Identities=10% Similarity=0.217 Sum_probs=41.1
Q ss_pred HHHHHcCCCCChhhHHHHHHHhcccc-chhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 046638 51 SEMRQAGIDIDYFTITSIVGAIGVIS-GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112 (306)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (306)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..|....+..+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566777666544 34555555554 567788899888887766677777777777776664
No 326
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.09 E-value=61 Score=22.18 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHH
Q 046638 79 KEGKQMHALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 138 (306)
+.+..+|..|...|+.. -...|......+...|++.+|.++|+.-.+........|...+
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 142 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQY 142 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 34677777777666532 3455666667777777777777777776665555555554443
No 327
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=48.53 E-value=41 Score=22.14 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=29.7
Q ss_pred HHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 046638 68 IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112 (306)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (306)
++..+...+..-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444555667778888888777766666666666666666654
No 328
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.87 E-value=84 Score=23.75 Aligned_cols=168 Identities=7% Similarity=-0.056 Sum_probs=79.8
Q ss_pred cCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 046638 40 LGSGEQALKCFSEMRQAGI-DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118 (306)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 118 (306)
..+..+..+++.. .++ ..|..-.+. +...+..|+.+-+. .+++.|..++..--.+.+...+..|+.+-+..
T Consensus 9 ~~~~~~v~~lL~~---~~~~~~d~~g~t~-L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 9 TWKSKQLKSFLSS---KDTFKADVHGHSA-SYYAIADNNVRLVC----TLLNAGALKNLLENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp GCCHHHHHHHHHS---TTTTCCCTTSCCH-HHHHHHTTCHHHHH----HHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHH
T ss_pred hcCHHHHHHHHHh---CCCCccCCCCCCH-HHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 4455555555533 232 123333333 33344567665444 44444544332212234455566788877777
Q ss_pred HHHhcCcC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHH---HHHHHHHHHccCChHHHHHHHHHHHhc
Q 046638 119 VFSSMDER---DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT---FLVVLSACCHAGFIDKGLQYFYLMRND 192 (306)
Q Consensus 119 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (306)
+++.-..+ |...++.|.. .+..|+.+-+.-+++ .|..++... +...+...+..|+.+-+..+ .+.
T Consensus 81 Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L----l~~ 151 (285)
T 3kea_A 81 LLFSGLDDSQFDDKGNTALYY-AVDSGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF----LSE 151 (285)
T ss_dssp HHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH----HTT
T ss_pred HHHCCCCCCCcCCCCCcHHHH-HHHcCCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH----HhC
Confidence 77654432 3333333433 345677655444443 354444321 12344445566776544433 333
Q ss_pred CCCCCCcH-hHHHHHHHHHhccCChHHHHHHHHHh
Q 046638 193 ASLEPPRA-EHYTAIVGLLGRAGFLNEAESFINSM 226 (306)
Q Consensus 193 ~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (306)
+.... +. ...+. +...+..|..+-+.-+++.-
T Consensus 152 g~~~~-~~~~g~t~-L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 152 IPSTF-DLAILLSC-IHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp SCTTC-CCSTHHHH-HHHHHHTTCHHHHHHHHHHH
T ss_pred CCccc-cccCCccH-HHHHHHcChHHHHHHHHHcC
Confidence 32211 22 23333 34445677777776666553
No 329
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=47.10 E-value=29 Score=22.91 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=26.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC
Q 046638 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178 (306)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 178 (306)
++..+...+..-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444455556666677776666555566665555666655553
No 330
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.84 E-value=74 Score=25.79 Aligned_cols=23 Identities=4% Similarity=-0.067 Sum_probs=12.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 046638 238 LLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
+...|...|+.+.|..+++++..
T Consensus 133 i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 133 IARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445556666666666655553
No 331
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=45.90 E-value=72 Score=22.08 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=33.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHH-Hh-----ccccchhhHHHHHHHHHH
Q 046638 37 FCNLGSGEQALKCFSEMRQAGIDI--DYFTITSIVG-AI-----GVISGFKEGKQMHALIFK 90 (306)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~~-----~~~~~~~~a~~~~~~~~~ 90 (306)
+...|++=+|-++|+..-.....+ +...|..||+ .. .+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334488888888888775543344 3455666666 22 346777777777776654
No 332
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.49 E-value=44 Score=22.49 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHcc
Q 046638 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176 (306)
Q Consensus 146 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 176 (306)
.|.++++.+.+.++..+..|...-+..+...
T Consensus 35 ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 35 TPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp CHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 3444444444444333444433333333333
No 333
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=45.39 E-value=68 Score=21.69 Aligned_cols=62 Identities=10% Similarity=0.227 Sum_probs=44.7
Q ss_pred HHHHHcCCCCChhhHHHHHHHhcccc-chhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 51 SEMRQAGIDIDYFTITSIVGAIGVIS-GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
+.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44667787766543 33455555566 6788999999999988777887777777777777754
No 334
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=45.27 E-value=64 Score=21.33 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=41.5
Q ss_pred HHHHcCCCCChhhHHHHHHHhcccc-chhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 52 EMRQAGIDIDYFTITSIVGAIGVIS-GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35667776665433 3444555555 6788999999999888777777777677777776643
No 335
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=44.97 E-value=1.1e+02 Score=24.08 Aligned_cols=57 Identities=9% Similarity=0.057 Sum_probs=31.3
Q ss_pred chhhhhhcCChHHHHhhhhhccCcc---hHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCC
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRTRN---QISWNAIIAGFCNLG-SGEQALKCFSEMRQAGI 58 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~ 58 (306)
++.=|...|+.++|.+.++.+..|. ......+..++-+.. ..+.+..++..+.+.|+
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 4556777788888888888886653 122222222222211 23455556666665554
No 336
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.40 E-value=79 Score=21.87 Aligned_cols=53 Identities=13% Similarity=-0.051 Sum_probs=34.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc--cHHHHHHHHH-H-----HHccCChHHHHHHHHHHHh
Q 046638 139 AHHGYSREAVQLFEQMQKTEIKP--DGTTFLVVLS-A-----CCHAGFIDKGLQYFYLMRN 191 (306)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 191 (306)
...|++-+|-++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34488888888888876654445 4455666666 2 2356788778777776654
No 337
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=43.39 E-value=25 Score=23.53 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=21.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccC
Q 046638 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177 (306)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 177 (306)
+..+...++.-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3334444444455556666555555555555544555555444
No 338
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=42.51 E-value=43 Score=23.25 Aligned_cols=25 Identities=12% Similarity=0.345 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 046638 30 WNAIIAGFCNLGSGEQALKCFSEMR 54 (306)
Q Consensus 30 ~~~li~~~~~~~~~~~a~~~~~~~~ 54 (306)
...++.-|...|+.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567788888899999999988875
No 339
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=42.35 E-value=92 Score=22.31 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=24.5
Q ss_pred hhhhhhcCChHHHHhhhhh-ccC---cchHHHHHHHHHHHhcCChHHHHHHHH
Q 046638 3 ILTYSRCDSSLDFQNVYSS-VRT---RNQISWNAIIAGFCNLGSGEQALKCFS 51 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~-~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 51 (306)
+...++.|+.+....+++. ... +|..-++.|. ..+..|+.+-+..+++
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~ 58 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALH-IAALYDNLEAAMVLME 58 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHH-HHHHcCCHHHHHHHHH
Confidence 3445677777777777765 221 2332333333 3345566554444443
No 340
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=42.30 E-value=77 Score=21.42 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=11.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 046638 32 AIIAGFCNLGSGEQALKCFSEMRQAG 57 (306)
Q Consensus 32 ~li~~~~~~~~~~~a~~~~~~~~~~~ 57 (306)
.++..+...+..-.|.++++.+.+.+
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~ 56 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKD 56 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC
Confidence 33444444444444444444444443
No 341
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.64 E-value=86 Score=21.77 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHhcCcC
Q 046638 81 GKQMHALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDER 126 (306)
Q Consensus 81 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 126 (306)
...+|..|...|+.. -...|......+-..|++.+|.++|+.-.+.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 444555555444322 2333444444455555555555555544443
No 342
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.43 E-value=75 Score=21.00 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 046638 26 NQISWNAIIAGFCNLG-SGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (306)
.+..-..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 16 ~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 16 VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444556677777666 77889999999988876666666555555555444
No 343
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=38.12 E-value=56 Score=18.58 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 046638 30 WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72 (306)
Q Consensus 30 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (306)
++.++..++...-.+.++..+.++.+.| ..+..+|..-++.+
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~L 46 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGREL 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4455555555555566666666666655 24445554444433
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.91 E-value=55 Score=22.16 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 046638 26 NQISWNAIIAGFCNLG-SGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (306)
-+..-..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 15 ~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 15 VTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp CCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3444455666666666 67789999999988876666666555555555544
No 345
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.60 E-value=1.2e+02 Score=22.31 Aligned_cols=51 Identities=8% Similarity=0.042 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHHhccccchhhHHHHHHHHHHcCCCc
Q 046638 45 QALKCFSEMRQAGIDIDY-FTITSIVGAIGVISGFKEGKQMHALIFKIGYDS 95 (306)
Q Consensus 45 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 95 (306)
.+.++|..|...|+--.. .-|......+...|++.+|..+|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444555555555443332 223344444445555555555555555554444
No 346
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=35.82 E-value=1.7e+02 Score=23.56 Aligned_cols=67 Identities=9% Similarity=0.124 Sum_probs=39.7
Q ss_pred ChhhHHHHHHHHHhcCCH--HHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 231 GPSVYKALLSACQVHGNR--EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
+..+|-.++..+....++ +++..+++.+..-..++...-..|+....+.-..+|-..+.+.|++.+.
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~ 90 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAH 90 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCC
Confidence 334666666666655543 6777777777775554555555555555555566666666666666553
No 347
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=35.05 E-value=1.3e+02 Score=25.85 Aligned_cols=65 Identities=6% Similarity=-0.081 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcC---CchhHHHHHHHHHhcCCHHH
Q 046638 81 GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER---DLVSWNSLLLGCAHHGYSRE 146 (306)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 146 (306)
.....++++.+-+--+..-..-++..|.+.|-.+.|.++++.+-.. +...+ .-+..|++.|+++.
T Consensus 500 gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 500 KKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp HHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhh
Confidence 3334444443322223334444555566666666666666555432 22233 33344555555543
No 348
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.03 E-value=79 Score=22.78 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=13.0
Q ss_pred HHHHHccCChHHHHHHHHHHHh
Q 046638 170 LSACCHAGFIDKGLQYFYLMRN 191 (306)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~ 191 (306)
+..|.+.|.+++|.+++++...
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHccchHHHHHHHHHHhc
Confidence 3456666666666666666543
No 349
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=33.54 E-value=2.9e+02 Score=25.47 Aligned_cols=49 Identities=6% Similarity=-0.076 Sum_probs=22.2
Q ss_pred HccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 174 CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
.+.|..++-..++++..... +..--..++.+++...+.+...++++...
T Consensus 737 ~~~g~~~~~~~l~~~~~~~~-----~~~ek~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 737 IAQGGQDQWDFAWGQLQQAQ-----LVNEADKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHSCHHHHHHHHHHHHHCC-----SHHHHHHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHccC-----CHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 34444444444444444321 22233445555555555555555555444
No 350
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=31.19 E-value=1.1e+02 Score=24.24 Aligned_cols=108 Identities=7% Similarity=0.027 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHcC---CCCChhh---HHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHH
Q 046638 43 GEQALKCFSEMRQAG---IDIDYFT---ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116 (306)
Q Consensus 43 ~~~a~~~~~~~~~~~---~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 116 (306)
-+.|..+|..+...- ..++... ....+..+.+..++ ++++.+.+.|+.|...++.-++..+.+.=.++.+
T Consensus 188 E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP----~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~ 263 (345)
T 2qfz_A 188 EADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDE----QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCT 263 (345)
T ss_dssp HHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHH
T ss_pred HHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHH
Confidence 345667777766531 2222222 12222233333333 4666777888888888888888888888889999
Q ss_pred HHHHHhcCcC-Cc----hhHH--HHHHH----HHhcCCHHHHHHHHHHH
Q 046638 117 NKVFSSMDER-DL----VSWN--SLLLG----CAHHGYSREAVQLFEQM 154 (306)
Q Consensus 117 ~~~~~~~~~~-~~----~~~~--~l~~~----~~~~~~~~~a~~~~~~m 154 (306)
..+++.+... +. ..+- +++.. .....++++.+.+++.+
T Consensus 264 lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~ 312 (345)
T 2qfz_A 264 IRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312 (345)
T ss_dssp HHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSC
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Confidence 9999988742 21 1121 22211 23356777777777654
No 351
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.77 E-value=49 Score=23.81 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=9.3
Q ss_pred HHhccCChHHHHHHHHH
Q 046638 209 LLGRAGFLNEAESFINS 225 (306)
Q Consensus 209 ~~~~~~~~~~a~~~~~~ 225 (306)
..+..|+.+-+.-+++.
T Consensus 183 ~A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 183 WAVLAGNTTVISLLLEA 199 (240)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33455666655555554
No 352
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=30.76 E-value=49 Score=15.68 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=11.5
Q ss_pred HHHHHhccCChHHHHHHHHHhc
Q 046638 206 IVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
.+..|...|..++|..+-.++.
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 3445555555555555544444
No 353
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.63 E-value=1.5e+02 Score=21.15 Aligned_cols=56 Identities=7% Similarity=-0.101 Sum_probs=24.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
.+...+..|+.+-+.-+++.-......+..-. ..+....+.|+.+-+.-+++...+
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhc
Confidence 34455677777666555554322211111111 122333455666555555544433
No 354
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=30.29 E-value=1e+02 Score=19.23 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHH-----HHcCCCccHHHHHH
Q 046638 45 QALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI-----FKIGYDSNVFVQNR 102 (306)
Q Consensus 45 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~ 102 (306)
.|.++.+++..-|+.|+..+...++..|...+- + +.++.++. ...|..|+....+.
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 456677777777888888777777776655442 2 33332222 23466676665554
No 355
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=29.92 E-value=99 Score=19.00 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=31.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH-----HccCChHHHHHHHHHHHh
Q 046638 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----CHAGFIDKGLQYFYLMRN 191 (306)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~ 191 (306)
...|++-+|-+++++.-.....|....+..+|... .+.|+. |..++.+...
T Consensus 12 fn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 12 WRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 34588888888888887665444455566555532 245665 6666655443
No 356
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=29.51 E-value=1.3e+02 Score=23.71 Aligned_cols=80 Identities=10% Similarity=0.112 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHcC-----CCCChhhH---HHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 42 SGEQALKCFSEMRQAG-----IDIDYFTI---TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 42 ~~~~a~~~~~~~~~~~-----~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
.-+.|..+|..+...- ..++.... ...+..+.+..++ ++++.+.+.|+.|...++.-++..+.+.=.+
T Consensus 169 ~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P----~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 244 (334)
T 2qq8_A 169 DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLP----KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPL 244 (334)
T ss_dssp CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCH
T ss_pred CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCH----HHHHHHHHcCCCccchHHHHHHHHhcccCCH
Confidence 4567788877765421 22333222 2222333333333 4666777788888888888888888887788
Q ss_pred HHHHHHHHhcCc
Q 046638 114 NDANKVFSSMDE 125 (306)
Q Consensus 114 ~~a~~~~~~~~~ 125 (306)
+.+..+++.+..
T Consensus 245 ~~~lriWD~~l~ 256 (334)
T 2qq8_A 245 DLACRIWDVFCR 256 (334)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887763
No 357
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=26.96 E-value=1.7e+02 Score=23.57 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--------CCchhHHHHHHHHH
Q 046638 68 IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--------RDLVSWNSLLLGCA 139 (306)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~ 139 (306)
++--.....++.-|+--+.++.+..+.|+... ++.+|.+... ..+..|..+...+.
T Consensus 244 LLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~----------------~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~y 307 (472)
T 3re2_A 244 LLYDMGHIKTYPMAIANLGDLEEISPTPGRPP----------------AEELFKEAITVAKREYSDHHIYPYTYLGGYYY 307 (472)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCC----------------HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred HHHhccchhhCchhhcchhhHHhcCCCCCCCC----------------HHHHHHHHHHHHHHHhccCCccchhhhhhhhh
Q ss_pred hcCCHHHHHHHHHHH
Q 046638 140 HHGYSREAVQLFEQM 154 (306)
Q Consensus 140 ~~~~~~~a~~~~~~m 154 (306)
+++++.+|+..+.+.
T Consensus 308 R~~~~reAl~~WA~A 322 (472)
T 3re2_A 308 RKKKYYEAIASWVDA 322 (472)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHH
No 358
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.64 E-value=1.4e+02 Score=23.28 Aligned_cols=211 Identities=9% Similarity=0.047 Sum_probs=104.3
Q ss_pred hhhhhhcCChHHHHhhhhhccCc---chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchh
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (306)
+...+..|+++-+..+++....+ |..-++.| ...+..|+.+-+ +.+.+.|..++...-.+.+...+..|+.+
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~ 98 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-HLACKFGCVDTA----KYLASVGEVHSLWHGQKPIHLAVMANKTD 98 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHCCHHHH----HHHHHHCCCCCCBTTBCHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-HHHHHcCCHHHH----HHHHHCCCCccccCCCCHHHHHHHcCCHH
Confidence 45567889999998888875332 33233333 344456666444 44455555444422223344445678887
Q ss_pred hHHHHHHHHHHcCCCccHHH-------------------HHHHHHHHHhcC--ChHHHHHHHHhcCcC---CchhHHHHH
Q 046638 80 EGKQMHALIFKIGYDSNVFV-------------------QNRLVFMYAICG--AINDANKVFSSMDER---DLVSWNSLL 135 (306)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~-------------------~~~l~~~~~~~g--~~~~a~~~~~~~~~~---~~~~~~~l~ 135 (306)
-+..+++.....|..++... -.+.+...+..| +.+-+..+++.-..+ |...++.|.
T Consensus 99 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~ 178 (364)
T 3ljn_A 99 LVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLM 178 (364)
T ss_dssp HHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred HHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 77777776555555443310 112344455667 666666666654332 323333343
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-cCCCcc---HHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-CCCCcHhHHHHHHHHH
Q 046638 136 LGCAHHGYSREAVQLFEQMQK-TEIKPD---GTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS-LEPPRAEHYTAIVGLL 210 (306)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~m~~-~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~l~~~~ 210 (306)
. .+..|+.+-+..+++.-.. .+..++ ..-.+ .+...+..|+.+-+..+++ .+. ....+..-.+.| ..-
T Consensus 179 ~-A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~gad~~~~d~~g~tpL-~~A 251 (364)
T 3ljn_A 179 R-AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS-HLHWAILINWEDVAMRFVE----MGIDVNMEDNEHTVPL-YLS 251 (364)
T ss_dssp H-HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC-TTHHHHTTTCHHHHHHHHT----TTCCTTCCCTTSCCHH-HHH
T ss_pred H-HHHcCCHHHHHHHHhcccccccccccccCCCCCc-HHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHH-HHH
Confidence 3 3466776655555543211 000011 11112 2233456677665444443 221 111122222223 333
Q ss_pred hccCChHHHHHHHHH
Q 046638 211 GRAGFLNEAESFINS 225 (306)
Q Consensus 211 ~~~~~~~~a~~~~~~ 225 (306)
+..|+.+-+.-+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 455777777777765
No 359
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.12 E-value=2.4e+02 Score=22.19 Aligned_cols=61 Identities=10% Similarity=0.070 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCcCCc---hhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC
Q 046638 100 QNRLVFMYAICGAINDANKVFSSMDERDL---VSWNSLLLGCAHHG-YSREAVQLFEQMQKTEIK 160 (306)
Q Consensus 100 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~ 160 (306)
...++.=|...|+.++|...++++..|.. .+...+..++-+.. .-+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 34577778888899999998888876642 12222222222211 133445566666655543
No 360
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=25.94 E-value=2.3e+02 Score=21.86 Aligned_cols=106 Identities=8% Similarity=0.074 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChhh--HHH------HHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 42 SGEQALKCFSEMRQAGIDIDYFT--ITS------IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~--~~~------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
+-+.|..++..+......++... ... .+..+.+..++ ++++.+.+.|+.|...++.-++..+.+.=.+
T Consensus 130 ~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p----~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 205 (310)
T 3hzj_A 130 PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLP----DLHSHFSDLNLEAHMYASQWFLTLFTAKFPL 205 (310)
T ss_dssp CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCH
T ss_pred CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhCh----HHHHHHHHcCCChHHHHHHHHHHHHhccCCH
Confidence 56778888888765421222211 111 12222222222 4566677788888888888888888887778
Q ss_pred HHHHHHHHhcCc--CCchhHHHH--HH----HHHhcCCHHHHHHHHH
Q 046638 114 NDANKVFSSMDE--RDLVSWNSL--LL----GCAHHGYSREAVQLFE 152 (306)
Q Consensus 114 ~~a~~~~~~~~~--~~~~~~~~l--~~----~~~~~~~~~~a~~~~~ 152 (306)
+.+..+++.+.. +....+-++ +. -.. ..+.++....+.
T Consensus 206 ~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll-~~d~~~~l~~l~ 251 (310)
T 3hzj_A 206 CMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLL-QADFEGALKFFR 251 (310)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHH-TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 888888887763 222222111 11 112 247888888886
No 361
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=25.88 E-value=2.1e+02 Score=25.21 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=39.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhh
Q 046638 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDD 284 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 284 (306)
........|++.-|.++.+.++..+|++...-..++.+|.+.|.-.+
T Consensus 455 ~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 455 QARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 34456678999999999999999999999999999999988775443
No 362
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.39 E-value=1.2e+02 Score=18.62 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 046638 237 ALLSACQVHGNREIAVRSAKRVL 259 (306)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~ 259 (306)
.....+.+.|++++|++..+++.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455556666666655544433
No 363
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=25.25 E-value=2.2e+02 Score=21.39 Aligned_cols=57 Identities=4% Similarity=-0.137 Sum_probs=36.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcc-ccchhhHHHHHHHHH
Q 046638 33 IIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV-ISGFKEGKQMHALIF 89 (306)
Q Consensus 33 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 89 (306)
+....-+.+++++.....+.+.+.+...+..--+.|-.+|-. .|....+.+++..+.
T Consensus 10 ~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissie 67 (248)
T 3uzd_A 10 KARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIE 67 (248)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 445566778888888888888777766666666655555532 244455555554444
No 364
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=25.16 E-value=85 Score=17.34 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=16.9
Q ss_pred cCChHHHHHHHHHHHHcC-CCCC
Q 046638 40 LGSGEQALKCFSEMRQAG-IDID 61 (306)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~-~~~~ 61 (306)
.-+++.|...|.++...| ++|+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 458999999999998765 4443
No 365
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.06 E-value=2.7e+02 Score=22.39 Aligned_cols=114 Identities=11% Similarity=0.023 Sum_probs=55.3
Q ss_pred hhhhhhcCChHHHHhhhhhccCcchHH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh--HHHHHHHhccccch
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRTRNQIS--WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT--ITSIVGAIGVISGF 78 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 78 (306)
+..-+..|+++-+..+++....++... ..+.+...+..|+.+-+.. +.+.|..++... -.+.+...+..|+.
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 93 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY----LLQNKAKVNAKAKDDQTPLHCAARIGHT 93 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHH----HHHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 455677888888888887754332211 1123334456666654443 344444333211 11233333455655
Q ss_pred hhHHHHHHHHHHcCCCccHHH--HHHHHHHHHhcCChHHHHHHHHhcC
Q 046638 79 KEGKQMHALIFKIGYDSNVFV--QNRLVFMYAICGAINDANKVFSSMD 124 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~ 124 (306)
+ +.+.+++.|..++... -.+.+...+..|+.+-+..+++.-.
T Consensus 94 ~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 137 (437)
T 1n11_A 94 N----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137 (437)
T ss_dssp H----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred H----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence 4 3344444454433110 1122334456677777666666543
No 366
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=24.82 E-value=96 Score=19.19 Aligned_cols=30 Identities=3% Similarity=0.066 Sum_probs=16.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 046638 40 LGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73 (306)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (306)
.-..+++..+++.+...| ..+|..++.++.
T Consensus 48 ~t~~~k~~~Lld~L~~rG----~~Af~~F~~aL~ 77 (100)
T 3crd_A 48 TTGLRKTMLLLDILPSRG----PKAFDTFLDSLQ 77 (100)
T ss_dssp SSSHHHHHHHHHHTTTSC----SSCHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHC----HHHHHHHHHHHH
Confidence 445566666666655544 245555555554
No 367
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=24.55 E-value=2.5e+02 Score=21.86 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=64.1
Q ss_pred CChHHHHHHHHHHHHcC-----CCCChhhHHHHH---HHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 046638 41 GSGEQALKCFSEMRQAG-----IDIDYFTITSIV---GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112 (306)
Q Consensus 41 ~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (306)
-+-+.|..+|..+...- ..|+.......+ ..+.+..++ ++++.+.+.|+.|...+..-++..+.+.=.
T Consensus 163 ~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p----~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp 238 (331)
T 3qye_A 163 MSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHR----DLYNHLEEHEIGPSLYAAPWFLTMFASQFP 238 (331)
T ss_dssp SCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGGGTSHHHHHSTTTTTSC
T ss_pred hhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCChHHHHHHHHHHHhhhhCC
Confidence 35677888888876531 234433222221 222222222 466777788888888888888888888777
Q ss_pred hHHHHHHHHhcCc--CCchhHHHH--HH----HHHhcCCHHHHHHHHHHH
Q 046638 113 INDANKVFSSMDE--RDLVSWNSL--LL----GCAHHGYSREAVQLFEQM 154 (306)
Q Consensus 113 ~~~a~~~~~~~~~--~~~~~~~~l--~~----~~~~~~~~~~a~~~~~~m 154 (306)
++.+..+++.+.. +....+-++ +. ...+..+.++....++..
T Consensus 239 ~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 239 LGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 8888888887763 222222211 11 122334677777777653
No 368
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=24.43 E-value=1.9e+02 Score=20.47 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=23.4
Q ss_pred CCccHHHHH--HHHHHHHccCChHHHHHHHHHHHhcC
Q 046638 159 IKPDGTTFL--VVLSACCHAGFIDKGLQYFYLMRNDA 193 (306)
Q Consensus 159 ~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (306)
..|...+|. .....+...|..++...+|..+.+..
T Consensus 202 ~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kD 238 (242)
T 3kae_A 202 HVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKD 238 (242)
T ss_dssp STTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcC
Confidence 345555553 33455677888888888888877654
No 369
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=24.15 E-value=1.4e+02 Score=24.91 Aligned_cols=25 Identities=4% Similarity=0.010 Sum_probs=14.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhc
Q 046638 203 YTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
.+.+...|.+.|+..-+..+++.+.
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~ 203 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQ 203 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 3455566666666666666665553
No 370
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=24.12 E-value=1.3e+02 Score=21.42 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 046638 31 NAIIAGFCNLGSGEQALKCFSEMRQ 55 (306)
Q Consensus 31 ~~li~~~~~~~~~~~a~~~~~~~~~ 55 (306)
-.+|.++.+.|++++|.+++.++..
T Consensus 36 LqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 36 LQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677777777777777766644
No 371
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.86 E-value=2.1e+02 Score=20.68 Aligned_cols=44 Identities=5% Similarity=0.067 Sum_probs=33.9
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC
Q 046638 134 LLLGC---AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178 (306)
Q Consensus 134 l~~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 178 (306)
+|+++ .+..+++.|+-++-+|++.| .|....-..++.+.-..|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 44444 46689999999999999999 8877777777777766664
No 372
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.44 E-value=2.9e+02 Score=22.26 Aligned_cols=84 Identities=8% Similarity=-0.007 Sum_probs=45.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC------------C----CCChhhHHHHHHHhccccchhhHHHHHHHHHHc-----CC
Q 046638 35 AGFCNLGSGEQALKCFSEMRQAG------------I----DIDYFTITSIVGAIGVISGFKEGKQMHALIFKI-----GY 93 (306)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~------------~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 93 (306)
.......+.+++.+.++++...- . .+-......+...+...++.+.|..++++.... ++
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 34556677888888887663310 0 011122234445566677777777777776531 23
Q ss_pred Ccc--HHHHHHHHHHHHhcCChHHHHH
Q 046638 94 DSN--VFVQNRLVFMYAICGAINDANK 118 (306)
Q Consensus 94 ~~~--~~~~~~l~~~~~~~g~~~~a~~ 118 (306)
.|. ...|...+..|...+++..+..
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~ 190 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYY 190 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 322 2344455555666666655443
No 373
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.26 E-value=3.2e+02 Score=22.69 Aligned_cols=62 Identities=8% Similarity=0.024 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--------hhHHH-HHHHhccccchhhHHHHHHHHHHc
Q 046638 30 WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY--------FTITS-IVGAIGVISGFKEGKQMHALIFKI 91 (306)
Q Consensus 30 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 91 (306)
.|.+.+.|.+.|+...+..+++.+...+..|+. .+|.- +...+...+++.+|.+.+..+.+.
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 566778889999999999999888776653332 33433 233445667777887777776654
No 374
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=23.23 E-value=3.6e+02 Score=23.22 Aligned_cols=72 Identities=6% Similarity=0.048 Sum_probs=31.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHH
Q 046638 176 AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREI 250 (306)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 250 (306)
..+.....+....+..+..+. +..-...++..|.+.|-.+.|.++++.+..+ .+...+ .-+..+.+.|+++.
T Consensus 494 ~~~~~~gr~~IselLpr~Pl~--Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 494 TGTRSAKKMVIAELLPHYPFV--TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp SSCHHHHHHHHHHHGGGCCCC--SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC------------------------
T ss_pred ccchhHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhh
Confidence 344445555566665554432 3444566777777777777777777777654 233333 33444666666654
No 375
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.10 E-value=1.9e+02 Score=20.32 Aligned_cols=49 Identities=4% Similarity=-0.126 Sum_probs=34.2
Q ss_pred ChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 046638 61 DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC 110 (306)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (306)
....++.++..++.-.-.+.++.++.++++.|. .+..+|---+..+++.
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 345567778888777788888888888888874 4566666555555553
No 376
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=23.06 E-value=2.1e+02 Score=23.62 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--------CCchhHHHHHHHHH
Q 046638 68 IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--------RDLVSWNSLLLGCA 139 (306)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~ 139 (306)
++--.....++.-|+--+.++.+..+.|+... ++.+|.+... ..+..|+.+...+.
T Consensus 266 lLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~----------------~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~y 329 (550)
T 3u84_A 266 LLYDLGHLERYPMALGNLADLEELEPTPGRPD----------------PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHC 329 (550)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCC----------------HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred HHHhccchhhCchhhcchhhHhhcCCCCCCCC----------------HHHHHHHHHHHHHHHhccCCccceeecchhhh
Q ss_pred hcCCHHHHHHHHHHH
Q 046638 140 HHGYSREAVQLFEQM 154 (306)
Q Consensus 140 ~~~~~~~a~~~~~~m 154 (306)
+++++.+|+..+.+.
T Consensus 330 R~~~~reAl~~WA~A 344 (550)
T 3u84_A 330 RNRNVREALQAWADT 344 (550)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHH
No 377
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.73 E-value=90 Score=18.48 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 237 ALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
.+.+-|+..|+++.|..+|+.+++
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHH
Confidence 355668888888888888887775
No 378
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=22.21 E-value=77 Score=20.60 Aligned_cols=50 Identities=4% Similarity=0.017 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHhh--cCCCchHHHHHHHHHHhh---cCChhhHHHHHHHHhhcCCCC
Q 046638 247 NREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA---TDCWDDAGDIRTLMYNRGIRK 299 (306)
Q Consensus 247 ~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~ 299 (306)
++++|.+++..+.+ ..-+.|..|+..+..+.. .++. ..+++.+.+.++.+
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lgL 96 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITL 96 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCCS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcCC
Confidence 55666666666655 222245556655554432 2222 44455555555543
No 379
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=21.78 E-value=1.3e+02 Score=17.54 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=18.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 238 LLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
+...+...|+.++|...|-.++...|.
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 556677777777777777777776664
No 380
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=21.77 E-value=1e+02 Score=16.47 Aligned_cols=10 Identities=30% Similarity=0.507 Sum_probs=4.4
Q ss_pred HHHHHHHcCC
Q 046638 49 CFSEMRQAGI 58 (306)
Q Consensus 49 ~~~~~~~~~~ 58 (306)
.+..|...|+
T Consensus 13 al~qMl~MGF 22 (52)
T 1q02_A 13 SLSQMLSMGF 22 (52)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHcCC
Confidence 3344444444
No 381
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=21.73 E-value=1.1e+02 Score=16.76 Aligned_cols=7 Identities=14% Similarity=0.254 Sum_probs=0.7
Q ss_pred hcCCHHH
Q 046638 244 VHGNREI 250 (306)
Q Consensus 244 ~~~~~~~ 250 (306)
..|++++
T Consensus 52 NrG~Yq~ 58 (61)
T 3ph0_C 52 NQGDYQR 58 (61)
T ss_dssp HC-----
T ss_pred ccchHhH
Confidence 3333333
No 382
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.18 E-value=1.5e+02 Score=17.93 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=20.5
Q ss_pred cCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCC
Q 046638 110 CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143 (306)
Q Consensus 110 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 143 (306)
....++|..+++.+......+|..+..++...+.
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 3455666666666666666666666666655554
No 383
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.12 E-value=1.8e+02 Score=18.86 Aligned_cols=42 Identities=12% Similarity=-0.088 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 046638 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191 (306)
Q Consensus 150 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (306)
+|+.+....+.|+...-..-+..+...++++.|..+.-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555655544444444455677788888887766654
No 384
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.04 E-value=4.5e+02 Score=25.64 Aligned_cols=79 Identities=10% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHh---------------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCc
Q 046638 31 NAIIAGFCN---------------LGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS 95 (306)
Q Consensus 31 ~~li~~~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 95 (306)
+.|+.++++ ....+...+.|.++.+.--.-|.......+.-....+++..|.+++.++.+. +|
T Consensus 1238 ~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~ 1315 (1354)
T 3lxu_X 1238 NTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KR 1315 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cc
Q ss_pred cHHHHHHHHHHHHhcC
Q 046638 96 NVFVQNRLVFMYAICG 111 (306)
Q Consensus 96 ~~~~~~~l~~~~~~~g 111 (306)
+...|..++..+...|
T Consensus 1316 ~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1316 TRDHFVELAAINGALG 1331 (1354)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHcC
No 385
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=21.03 E-value=4.9e+02 Score=23.94 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=47.6
Q ss_pred HHHHHHHHccCCh---HHHHHHHHHHHhcCC--CCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHH
Q 046638 167 LVVLSACCHAGFI---DKGLQYFYLMRNDAS--LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241 (306)
Q Consensus 167 ~~l~~~~~~~~~~---~~a~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 241 (306)
..++...|..|.. +.|.+.|+....... ..||+... .+-+..- |.-++-..+++......+..--..++.+
T Consensus 684 ~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~---~vy~~~~-g~~~~~~~l~~~y~~~~~~~ek~~ll~a 759 (897)
T 2xdt_A 684 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL---AVFAVGA-QSTEGWDFLYSKYQFSLSSTEKSQIEFA 759 (897)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHH---HHHHHHT-TSHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhh---hEEEEec-CCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 3455556666663 456667766655431 22334322 1111111 5544444555555544444445566777
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 046638 242 CQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~ 260 (306)
+....+.....++++..+.
T Consensus 760 L~c~~~~~~l~~~L~~~~~ 778 (897)
T 2xdt_A 760 LCRTQNKEKLQWLLDESFK 778 (897)
T ss_dssp HTTCCCHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHhC
Confidence 7777777777777766664
No 386
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.99 E-value=3e+02 Score=21.41 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=20.8
Q ss_pred chhhhhhcCChHHHHhhhhhccCcc
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRTRN 26 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~~~ 26 (306)
+|.=|...|+.++|...++.+..|.
T Consensus 9 ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 9 IIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 5677888899999999999987654
No 387
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=20.73 E-value=35 Score=19.94 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=21.5
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhhcCCCCCC
Q 046638 270 VLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301 (306)
Q Consensus 270 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 301 (306)
..++.--.+.| +..|-++.++|...|+...+
T Consensus 27 ~S~lQR~lrIG-YnRAArlid~lE~~GiVgp~ 57 (73)
T 2ve8_A 27 ISAVQRKLKIG-YNRAARMIEAMEMAGVVTPM 57 (73)
T ss_dssp HHHHHHHHTCC-HHHHHHHHHHHHHTTSBCCC
T ss_pred HHHHHHHHccC-hHHHHHHHHHHHHCCcCCcc
Confidence 34445555555 67788999999988886544
No 388
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.15 E-value=1.8e+02 Score=20.39 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 046638 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76 (306)
Q Consensus 25 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (306)
|....++.++..++...-.+.++-++.+....|. .+..+|.--++.+++..
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQ 159 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQ 159 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 4556689999999999999999999999999984 77788877777665543
No 389
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.13 E-value=2.5e+02 Score=20.22 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=34.0
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC
Q 046638 134 LLLGC---AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178 (306)
Q Consensus 134 l~~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 178 (306)
+|+++ .+..+++.|+-++-+|++.|-.|....-..++-+.-..|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 44444 4568999999999999999988877776777766665554
Done!