BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046642
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 22 LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
+S N G IP I ++ L L+L +N++ G IP + +L + +DLSSN L G IPQ
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 82 QLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEA 137
+S LT L D+S+N L+GPIP QF+TF + F NPGLCG PL +CD S A
Sbjct: 696 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNA 750
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%)
Query: 15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM 74
N + + L NN F G+IP +++N L +L LS N L G IP SL +L+ + + L NM
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 75 LSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
L G IPQ+L + +LE + N LTG IP G
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 7 ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIE 66
EL Y K + +IL N GEIP+ ++N L + LSNN L G IP + L +
Sbjct: 458 ELMYVKT---LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 67 SMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGK 114
+ LS+N SGNIP +L + SL + D++ NL G IP F GK
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP-AAMFKQSGK 561
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 54/89 (60%)
Query: 17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS 76
+ ++ LS N G IP+S+ +L LR+L L N L+G IP L + +E++ L N L+
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 77 GNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
G IP LS T+L + +S+N LTG IP+
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 25 NSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLS 84
N GEIP + +K L L L N+L G IP LSN T + + LS+N L+G IP+ +
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 85 ELTSLEFFDVSDNLLTGPIP 104
L +L +S+N +G IP
Sbjct: 509 RLENLAILKLSNNSFSGNIP 528
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS 76
+ + +S N G++ ++ L LD+S+NN IP L + +A++ +D+S N LS
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 233
Query: 77 GNIPQQLSELTSLEFFDVSDNLLTGPIP----RGKQFDTFGKSSFDG 119
G+ + +S T L+ ++S N GPIP + Q+ + ++ F G
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 280
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 25 NSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTA-IESMDLSSNMLSGNIPQQ 82
N+F GE+P ++ ++GL+ LDLS N G +P SL+NL+A + ++DLSSN SG I
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 83 LSE--LTSLEFFDVSDNLLTGPIP 104
L + +L+ + +N TG IP
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIP 408
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPL-SLSNLTAIESMDLSSNML 75
+T + LS N F G +P + L +L LS+NN G +P+ +L + ++ +DLS N
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 76 SGNIPQQLSELT-SLEFFDVSDNLLTGPI 103
SG +P+ L+ L+ SL D+S N +GPI
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 22 LSNNSFVGEIPTSIAN-LKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP 80
L+ N F GEIP ++ L LDLS N+ G +P + + +ES+ LSSN SG +P
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 81 QQ-LSELTSLEFFDVSDNLLTGPIPR 105
L ++ L+ D+S N +G +P
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPE 358
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
+L NL + LSNNSF G IP + + + L LDL+ N G IP ++ +S ++
Sbjct: 509 RLENL-AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIA 563
Query: 72 SNMLSG 77
+N ++G
Sbjct: 564 ANFIAG 569
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 30/122 (24%)
Query: 12 KLSNLITAIILSNNSFVGEIPT--SIANLKGLRNLDLSNNNLQ--GRIPLSLSNLTAIES 67
K S +T++ LS NS G + T S+ + GL+ L++S+N L G++ L L ++E
Sbjct: 94 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEV 152
Query: 68 MDLSSNMLSG-NI------------------------PQQLSELTSLEFFDVSDNLLTGP 102
+DLS+N +SG N+ +S +LEF DVS N +
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG 212
Query: 103 IP 104
IP
Sbjct: 213 IP 214
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 22 LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
+S N G IP I ++ L L+L +N++ G IP + +L + +DLSSN L G IPQ
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 82 QLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEA 137
+S LT L D+S+N L+GPIP QF+TF + F NPGLCG PL +CD S A
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNA 753
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%)
Query: 15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM 74
N + + L NN F G+IP +++N L +L LS N L G IP SL +L+ + + L NM
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 75 LSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
L G IPQ+L + +LE + N LTG IP G
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 7 ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIE 66
EL Y K + +IL N GEIP+ ++N L + LSNN L G IP + L +
Sbjct: 461 ELMYVKT---LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 67 SMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGK 114
+ LS+N SGNIP +L + SL + D++ NL G IP F GK
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP-AAMFKQSGK 564
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 54/89 (60%)
Query: 17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS 76
+ ++ LS N G IP+S+ +L LR+L L N L+G IP L + +E++ L N L+
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 77 GNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
G IP LS T+L + +S+N LTG IP+
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 25 NSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLS 84
N GEIP + +K L L L N+L G IP LSN T + + LS+N L+G IP+ +
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 85 ELTSLEFFDVSDNLLTGPIP 104
L +L +S+N +G IP
Sbjct: 512 RLENLAILKLSNNSFSGNIP 531
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 20 IILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNI 79
+ +S N G++ ++ L LD+S+NN IP L + +A++ +D+S N LSG+
Sbjct: 183 LAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239
Query: 80 PQQLSELTSLEFFDVSDNLLTGPIP----RGKQFDTFGKSSFDG 119
+ +S T L+ ++S N GPIP + Q+ + ++ F G
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 283
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 25 NSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTA-IESMDLSSNMLSGNIPQQ 82
N+F GE+P ++ ++GL+ LDLS N G +P SL+NL+A + ++DLSSN SG I
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 83 LSE--LTSLEFFDVSDNLLTGPIP 104
L + +L+ + +N TG IP
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIP 411
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPL-SLSNLTAIESMDLSSNML 75
+T + LS N F G +P + L +L LS+NN G +P+ +L + ++ +DLS N
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 76 SGNIPQQLSELT-SLEFFDVSDNLLTGPI 103
SG +P+ L+ L+ SL D+S N +GPI
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 22 LSNNSFVGEIPTSIAN-LKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP 80
L+ N F GEIP ++ L LDLS N+ G +P + + +ES+ LSSN SG +P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 81 QQ-LSELTSLEFFDVSDNLLTGPIPR 105
L ++ L+ D+S N +G +P
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPE 361
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
+L NL + LSNNSF G IP + + + L LDL+ N G IP ++ +S ++
Sbjct: 512 RLENL-AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIA 566
Query: 72 SNMLSG 77
+N ++G
Sbjct: 567 ANFIAG 572
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 30/122 (24%)
Query: 12 KLSNLITAIILSNNSFVGEIPT--SIANLKGLRNLDLSNNNLQ--GRIPLSLSNLTAIES 67
K S +T++ LS NS G + T S+ + GL+ L++S+N L G++ L L ++E
Sbjct: 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEV 155
Query: 68 MDLSSNMLSG-NI------------------------PQQLSELTSLEFFDVSDNLLTGP 102
+DLS+N +SG N+ +S +LEF DVS N +
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG 215
Query: 103 IP 104
IP
Sbjct: 216 IP 217
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 24/143 (16%)
Query: 9 EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG-------------RI 55
Y S L T++ +S N G+IP + ANL L +DLS N L+G +I
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 56 PLSLSNLT----------AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
L+ ++L + +DL +N + G +PQ L++L L +VS N L G IP+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 106 GKQFDTFGKSSFDGNPGLCGGPL 128
G F S++ N LCG PL
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPL 309
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 31 IPTSIANLKGLRNLDLSN-NNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89
IP+S+ANL L L + NNL G IP +++ LT + + ++ +SG IP LS++ +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 90 EFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGN 120
D S N L+G +P +FDGN
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 4 KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
K T+L Y + +++ + G IP ++ +K L LD S N L G +P S+S+L
Sbjct: 99 KLTQLHY---------LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 64 AIESMDLSSNMLSGNIPQQLSELTSL-EFFDVSDNLLTGPIP 104
+ + N +SG IP + L +S N LTG IP
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 2 SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
SNKG ++ + + +T + L N F +P ++N K L +DLSNN + S SN
Sbjct: 18 SNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76
Query: 62 LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGK--QFDTFGKSSFDG 119
+T + ++ LS N L P+ L SL + N ++ +P G +
Sbjct: 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGA 135
Query: 120 NPGLC 124
NP C
Sbjct: 136 NPLYC 140
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM 74
+ +T + L+ NS E+P I NL LR LDLS+N L +P L + ++ NM
Sbjct: 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNM 304
Query: 75 LSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQF 109
++ +P + L +L+F V N P KQF
Sbjct: 305 VT-TLPWEFGNLCNLQFLGVEGN------PLEKQF 332
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 21 ILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP 80
IL NN+ + +I T +ANL L L L NN + P L NLT + ++LSSN +S
Sbjct: 90 ILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--I 144
Query: 81 QQLSELTSLEFFDVSDNLLTGPIP 104
LS LTSL+ + S N +T P
Sbjct: 145 SALSGLTSLQQLNFSSNQVTDLKP 168
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 33 TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92
++++ L L+ L+ S+N + PL+ NLT +E +D+SSN +S L++LT+LE
Sbjct: 145 SALSGLTSLQQLNFSSNQVTDLKPLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESL 200
Query: 93 DVSDNLLTGPIPRG 106
++N ++ P G
Sbjct: 201 IATNNQISDITPLG 214
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 34 SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93
++A+L L +LDL+NN + P LS LT + + L +N +S P L+ LT+L +
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 94 VSDNLL 99
+++N L
Sbjct: 290 LNENQL 295
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 21 ILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP 80
IL NN+ + +I T +ANL L L L NN + P L NLT + ++LSSN +S
Sbjct: 90 ILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--I 144
Query: 81 QQLSELTSLEFFDVSDNLLTGPIP 104
LS LTSL+ S N +T P
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP 168
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 33 TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92
++++ L L+ L S+N + PL+ NLT +E +D+SSN +S L++LT+LE
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESL 200
Query: 93 DVSDNLLTGPIPRG 106
++N ++ P G
Sbjct: 201 IATNNQISDITPLG 214
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 34 SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93
++A+L L +LDL+NN + P LS LT + + L +N +S P L+ LT+L +
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 94 VSDNLL 99
+++N L
Sbjct: 290 LNENQL 295
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 21 ILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP 80
IL NN+ + +I T +ANL L L L NN + P L NLT + ++LSSN +S
Sbjct: 90 ILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--I 144
Query: 81 QQLSELTSLEFFDVSDNLLTGPIP 104
LS LTSL+ S N +T P
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP 168
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 33 TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92
++++ L L+ L S+N + PL+ NLT +E +D+SSN +S L++LT+LE
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESL 200
Query: 93 DVSDNLLTGPIPRG 106
++N ++ P G
Sbjct: 201 IATNNQISDITPLG 214
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 34 SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93
++A+L L +LDL+NN + P LS LT + + L +N +S P L+ LT+L +
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 94 VSDNLL 99
+++N L
Sbjct: 290 LNENQL 295
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 35 IANLKGLRNLDLSNNNLQG-RIPLSLSNLTAIESMDLSSNML 75
I +LK L+ L++++N +Q ++P SNLT +E +DLSSN +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 35 IANLKGLRNLDLSNNNLQG-RIPLSLSNLTAIESMDLSSNML 75
I +LK L+ L++++N +Q ++P SNLT +E +DLSSN +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 35 IANLKGLRNLDLSNNNLQG-RIPLSLSNLTAIESMDLSSNML 75
I +LK L+ L++++N +Q ++P SNLT +E +DLSSN +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 35 IANLKGLRNLDLSNNNLQG-RIPLSLSNLTAIESMDLSSNML 75
I +LK L+ L++++N +Q ++P SNLT +E +DLSSN +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 35 IANLKGLRNLDLSNNNLQG-RIPLSLSNLTAIESMDLSSNML 75
I +LK L+ L++++N +Q ++P SNLT +E +DLSSN +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 35 IANLKGLRNLDLSNNNLQG-RIPLSLSNLTAIESMDLSSN 73
I +LK L+ L++++N +Q ++P SNLT +E +DLSSN
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
+ +L NL T + LS PT+ +L L+ L++S+NN L +++ +D
Sbjct: 490 FTELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548
Query: 70 LSSNMLSGNIPQQLSEL-TSLEFFDVSDN 97
S N + + Q+L +SL F +++ N
Sbjct: 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 35 IANLKGLRNLDLSNNNLQG-RIPLSLSNLTAIESMDLSSN 73
I +LK L+ L++++N +Q ++P SNLT +E +DLSSN
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 32 PTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSEL-TSLE 90
PT+ +L L+ L++S+NN L +++ +D S N + + Q+L +SL
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546
Query: 91 FFDVSDN 97
F +++ N
Sbjct: 547 FLNLTQN 553
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 35 IANLKGLRNLDLSNNNLQG-RIPLSLSNLTAIESMDLSSN 73
I +LK L+ L++++N +Q ++P SNLT +E +DLSSN
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 17 ITAIILSNNSFVGE-IPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNML 75
+ + ++ NSF +P L+ L LDLS L+ P + ++L++++ ++++SN L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 76 SGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
LTSL+ + N PR
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS 76
I + LS+N G + + ++ LDL NN + IP +++L A++ ++++SN L
Sbjct: 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK 486
Query: 77 GNIPQQLSELTSLEFFDVSDN 97
LTSL++ + DN
Sbjct: 487 SVPDGVFDRLTSLQYIWLHDN 507
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 28 VGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELT 87
+ +P SIANL+ L++L + N+ L P ++ +L +E +DL N P
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 88 SLEFFDVSD--NLLTGPI 103
L+ + D NLLT P+
Sbjct: 254 PLKRLILKDCSNLLTLPL 271
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
L IT I L N+ P + + K LR +DLSNN + P + L ++ S+ L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 73 NMLSGNIPQQLSE 85
N ++ +P+ L E
Sbjct: 90 NKIT-ELPKSLFE 101
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
L IT I L N+ P + + K LR +DLSNN + P + L ++ S+ L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 73 NMLSGNIPQQLSE 85
N ++ +P+ L E
Sbjct: 90 NKIT-ELPKSLFE 101
>pdb|2LW4|A Chain A, Solution Nmr Structure Of Human Transcription Elongation
Factor A Protein 2, Central Domain, Northeast Structural
Genomics Consortium (Nesg) Target Hr8682b
Length = 113
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 45 DLSNNNLQ--GRIPLSLSNLTAIESMDLSSNMLSGNI-PQQLSELTSLEFFDVSDNL 98
D+ N +++ R+ +SNL ++ DL N+L G I PQQ++ +TS E SD L
Sbjct: 51 DVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEM--ASDEL 105
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
++KL+NL T + L++N L L LDLS N LQ LT ++ +
Sbjct: 129 FDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Query: 70 LSSNMLSGNIPQQLSELTSLEFFDVSDN 97
L N L LTSL++ + DN
Sbjct: 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 16 LITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM 74
L+T ++L N + +P I N L L +SNNNL+ + T+++++ LSSN
Sbjct: 124 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182
Query: 75 LSGNIPQQLSELTSLEFFDVSDNLL-TGPIP 104
L+ LS + SL +VS NLL T IP
Sbjct: 183 LTH---VDLSLIPSLFHANVSYNLLSTLAIP 210
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 37 NLKGLRNLDLSNNNLQG-RIPLSLSNLTAIESMDLSSNMLSGNIPQQLSEL--TSLEFFD 93
NLK L LDLS N ++ + S L +++S+D SSN + +L L +L FF
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 94 VSDNLLTGPI 103
++ N L +
Sbjct: 181 LAANSLYSRV 190
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 38 LKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS----GNIPQQLSELTSLEFFD 93
L L+ L L++N L P S+LTA+ + L+SN L+ ++P +LE D
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ANLEILD 532
Query: 94 VSDNLLTGPIP 104
+S N L P P
Sbjct: 533 ISRNQLLAPNP 543
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 35 IANLKGLRNLDLSNNNLQGR--IPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92
+ NL+ LR LDLS+++++ L L NL+ ++S++LS N + E LE
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 93 DVS 95
D++
Sbjct: 406 DLA 408
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 16 LITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM 74
L+T ++L N + +P I N L L +SNNNL+ + T+++++ LSSN
Sbjct: 118 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176
Query: 75 LSGNIPQQLSELTSLEFFDVSDNLL-TGPIP 104
L+ LS + SL +VS NLL T IP
Sbjct: 177 LTH---VDLSLIPSLFHANVSYNLLSTLAIP 204
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 25/115 (21%)
Query: 13 LSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS------------ 58
L+NL +T + L NN P + NL L L+LS+N + LS
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 59 -------LSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
L+NLT +E +D+SSN +S L++LT+LE ++N ++ P G
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 213
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 34 SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93
++A+L L +LDL+NN + P LS LT + + L +N +S P L+ LT+L +
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 94 VSDNLL 99
+++N L
Sbjct: 289 LNENQL 294
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 25/115 (21%)
Query: 13 LSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS------------ 58
L+NL +T + L NN P + NL L L+LS+N + LS
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 59 -------LSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
L+NLT +E +D+SSN +S L++LT+LE ++N ++ P G
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 213
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 34 SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93
++A+L L +LDL+NN + P LS LT + + L +N +S P L+ LT+L +
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 94 VSDNLL 99
+++N L
Sbjct: 289 LNENQL 294
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 25/115 (21%)
Query: 13 LSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS------------ 58
L+NL +T + L NN P + NL L L+LS+N + LS
Sbjct: 107 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 164
Query: 59 -------LSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
L+NLT +E +D+SSN +S L++LT+LE ++N ++ P G
Sbjct: 165 QVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 217
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 34 SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93
++A+L L +LDL+NN + P LS LT + + L +N +S P L+ LT+L +
Sbjct: 237 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 292
Query: 94 VSDNLL 99
+++N L
Sbjct: 293 LNENQL 298
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 25/115 (21%)
Query: 13 LSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS------------ 58
L+NL +T + L NN P + NL L L+LS+N + LS
Sbjct: 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 165
Query: 59 -------LSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
L+NLT +E +D+SSN +S L++LT+LE ++N ++ P G
Sbjct: 166 QVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 218
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 34 SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93
++A+L L +LDL+NN + P LS LT + + L +N +S P L+ LT+L +
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293
Query: 94 VSDNLL 99
+++N L
Sbjct: 294 LNENQL 299
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 40 GLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLL 99
GL +L + N L R+P SL +L++ +++L N LS Q L E+TS +
Sbjct: 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY------- 313
Query: 100 TGPIPRGKQFDTFGKSS 116
+GPI R FD G S+
Sbjct: 314 SGPIIR---FDMAGASA 327
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 31 IPTSIANLK----GLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSEL 86
+ ++A+L+ ++ LDLS N L L+ T +E ++LSSN+L + L L
Sbjct: 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL 79
Query: 87 TSLEFFDVSDN----LLTGP 102
++L D+++N LL GP
Sbjct: 80 STLRTLDLNNNYVQELLVGP 99
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 27/108 (25%)
Query: 15 NLITAIILSNNSFVGEIPTSIAN-------------------------LKGLRNLDLSNN 49
NL+ ++LS N F S AN L L+ LDLS+N
Sbjct: 298 NLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHN 357
Query: 50 NLQGR--IPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVS 95
+++ L L NL+ +++++LS N G Q E LE D++
Sbjct: 358 DIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 11 EKLSNLITAIILSNNSFVGEIPTSI--ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESM 68
EKL NL T + LS+N S+ NL L+ L+LS+N G + +E +
Sbjct: 344 EKLGNLQT-LDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 69 DLSSNMLSGNIPQ---------QLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDG 119
DL+ L N PQ Q+ LT F D S+ L +P + + G DG
Sbjct: 403 DLAFTRLHINAPQSPFQNLHFLQVLNLTYC-FLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 41 LRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDN--- 97
++ LDLS N L L+ T +E ++LSSN+L + L L++L D+++N
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93
Query: 98 -LLTGP 102
LL GP
Sbjct: 94 ELLVGP 99
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 18 TAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS 76
TA++ N+ + EI NLK L L L NN + P + + L +E + LS N L
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 77 GNIPQQLSELTSLEFFDVSDNLLT 100
+P+++ + +L+ V +N +T
Sbjct: 114 -ELPEKMPK--TLQELRVHENEIT 134
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 3 NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
NK T+++ L L + + LS NS S+AN LR L L+NN L ++P L+
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260
Query: 61 NLTAIESMDLSSNMLSG 77
+ I+ + L +N +S
Sbjct: 261 DHKYIQVVYLHNNNISA 277
>pdb|3NDQ|A Chain A, Structure Of Human Tfiis Domain Ii
Length = 108
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 41 LRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQL-SELTSLEF 91
+RN D+ N R+ +SNL ++ +L N+L GNIP L + +T+ E
Sbjct: 56 IRNTDMKYKN---RVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEM 104
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 18 TAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS 76
TA++ N+ + EI NLK L L L NN + P + + L +E + LS N L
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 77 GNIPQQLSELTSLEFFDVSDNLLT 100
+P+++ + +L+ V +N +T
Sbjct: 114 -ELPEKMPK--TLQELRVHENEIT 134
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 3 NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
NK T+++ L L + + LS NS S+AN LR L L+NN L ++P L+
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260
Query: 61 NLTAIESMDLSSNMLSG 77
+ I+ + L +N +S
Sbjct: 261 DHKYIQVVYLHNNNISA 277
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 20 IILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNI 79
++ N + +P I K + L L+NN + P +L ++ + +SN L+
Sbjct: 16 LVNCQNIRLASVPAGIPTDK--QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73
Query: 80 PQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTF 112
+LT L D++DN L IPRG FD
Sbjct: 74 TGVFDKLTQLTQLDLNDNHLKS-IPRGA-FDNL 104
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 43 NLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS--GNIPQQLSELTSLEFFDVSDN 97
+LD SNN L + + +LT +E++ L N L I + +++ SL+ D+S N
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 32 PTSIANLKGLRNLDLSNNNLQGRIPLS----LSNLTAIESMDLSSNMLSGNIPQQLSELT 87
P + NL LR L L +N L+ IPL LSNLT +D+S N + + +L
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLT---KLDISENKIVILLDYMFQDLY 128
Query: 88 SLEFFDVSDN 97
+L+ +V DN
Sbjct: 129 NLKSLEVGDN 138
>pdb|3AAD|B Chain B, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
pdb|3AAD|D Chain D, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 158
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 88 SLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
S E+ V D++L GP+P G+ F + NPGL
Sbjct: 53 SEEYDQVLDSVLVGPVPAGRHMFVFQADA--PNPGL 86
>pdb|2IO5|A Chain A, Crystal Structure Of The Cia- Histone H3-H4 Complex
Length = 175
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 88 SLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
S E+ V D++L GP+P G+ F + NPGL
Sbjct: 53 SEEYDQVLDSVLVGPVPAGRHMFVFQADA--PNPGL 86
>pdb|1TEY|A Chain A, Nmr Structure Of Human Histone Chaperone, Asf1a
pdb|2IIJ|A Chain A, Structure Of Human Asf1a In Complex With Histone H3
Length = 158
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 88 SLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
S E+ V D++L GP+P G+ F + NPGL
Sbjct: 52 SEEYDQVLDSVLVGPVPAGRHMFVFQADA--PNPGL 85
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 49/129 (37%), Gaps = 5/129 (3%)
Query: 10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
++KL+NL T + L +N L L LDL NN LQ LT ++ +
Sbjct: 129 FDKLTNL-TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLS 187
Query: 70 LSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLS 129
L+ N L LTSL LL P + +PGL G L+
Sbjct: 188 LNDNQLKSVPDGVFDRLTSLTHI----WLLNNPWDCACSDILYLSRWISQHPGLVFGYLN 243
Query: 130 KKCDNSEAS 138
D++ S
Sbjct: 244 LDPDSARCS 252
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 10 YEKLSNLITAIILSNNSFVGEIPTSIAN-LKGLRNLDLSNNNLQGRIPLSLSNLTAIESM 68
++KL+NL +++ N + +P + + L L L L +N LQ LT + +
Sbjct: 105 FDKLTNLKELVLVENQ--LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRL 162
Query: 69 DLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
DL +N L +LT L+ ++DN L +P G
Sbjct: 163 DLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDG 199
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
+ +L NL T + LS PT+ +L L+ L++S+NN L +++ +D
Sbjct: 171 FTELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229
Query: 70 LSSNMLSGNIPQQLSEL-TSLEFFDVSDN 97
S N + + Q+L +SL F +++ N
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
>pdb|2I32|A Chain A, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
pdb|2I32|B Chain B, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
Length = 182
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 88 SLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
S E+ V D++L GP+P G+ F + NPGL
Sbjct: 75 SEEYDQVLDSVLVGPVPAGRHMFVFQADA--PNPGL 108
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 28 VGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELT 87
+ IP+ + + +++LDLSNN + L ++++ L+SN ++ S L
Sbjct: 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100
Query: 88 SLEFFDVSDNLLT 100
SLE D+S N L+
Sbjct: 101 SLEHLDLSYNYLS 113
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
+L+NL +++LS+N + + LR LDLS+N+L S+L A+E + L
Sbjct: 62 RLTNL-HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120
Query: 72 SNML 75
+N +
Sbjct: 121 NNHI 124
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 28 VGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELT 87
+ IP+ + + +++LDLSNN + L ++++ L+SN ++ S L
Sbjct: 17 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 74
Query: 88 SLEFFDVSDNLLTG 101
SLE D+S N L+
Sbjct: 75 SLEHLDLSYNYLSN 88
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 30 EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIES--------MDLSSNMLSGNIPQ 81
++ T + + LD+S N L R+ +N+T ++ +D SSN L+
Sbjct: 171 QLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT---EI 227
Query: 82 QLSELTSLEFFDVSDNLLT 100
++ LT L +FD S N LT
Sbjct: 228 DVTPLTQLTYFDCSVNPLT 246
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS 76
+ I+L+ N + TS+ K L++L L+ + + + NL +ES+ L SN +S
Sbjct: 82 LNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHIS 141
Query: 77 G-NIPQ 81
N+P+
Sbjct: 142 SINLPE 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,914,609
Number of Sequences: 62578
Number of extensions: 233336
Number of successful extensions: 553
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 167
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)