Query 046642
Match_columns 207
No_of_seqs 306 out of 2509
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.8 9.4E-21 2E-25 166.5 12.6 118 16-133 419-538 (623)
2 PLN00113 leucine-rich repeat r 99.8 1.3E-18 2.8E-23 160.4 11.6 116 12-127 496-611 (968)
3 PLN00113 leucine-rich repeat r 99.6 4.4E-15 9.5E-20 137.1 12.1 114 14-127 474-588 (968)
4 PLN03150 hypothetical protein; 99.3 1E-11 2.2E-16 109.7 8.3 86 41-126 420-506 (623)
5 KOG0617 Ras suppressor protein 99.2 6.7E-13 1.4E-17 96.9 -1.0 83 15-100 33-115 (264)
6 KOG0617 Ras suppressor protein 99.2 2.1E-12 4.6E-17 94.3 -1.2 108 13-122 54-162 (264)
7 PF13855 LRR_8: Leucine rich r 99.1 2E-11 4.3E-16 75.2 2.1 61 15-75 1-61 (61)
8 KOG4194 Membrane glycoprotein 99.1 3.7E-12 8E-17 108.0 -2.3 106 15-121 317-427 (873)
9 PF14580 LRR_9: Leucine-rich r 99.1 4.5E-11 9.7E-16 88.8 3.6 105 13-122 17-125 (175)
10 KOG4194 Membrane glycoprotein 99.1 8.9E-12 1.9E-16 105.7 -0.9 120 10-129 336-458 (873)
11 KOG4237 Extracellular matrix p 99.1 8.5E-12 1.8E-16 101.3 -1.1 127 3-129 55-207 (498)
12 PF13855 LRR_8: Leucine rich r 99.1 4.4E-11 9.5E-16 73.6 1.7 61 39-99 1-61 (61)
13 KOG0472 Leucine-rich repeat pr 99.0 2.8E-11 6E-16 98.7 -1.5 106 14-122 182-309 (565)
14 KOG0472 Leucine-rich repeat pr 99.0 1.8E-10 3.9E-15 94.0 1.6 112 10-123 430-541 (565)
15 KOG0444 Cytoskeletal regulator 99.0 1.1E-10 2.5E-15 100.1 0.1 83 14-99 102-185 (1255)
16 KOG0618 Serine/threonine phosp 98.9 1.2E-10 2.6E-15 103.1 -0.4 109 11-123 379-489 (1081)
17 KOG4237 Extracellular matrix p 98.9 7.3E-10 1.6E-14 90.2 3.9 90 11-100 270-359 (498)
18 PF14580 LRR_9: Leucine-rich r 98.9 9.5E-10 2.1E-14 81.8 3.8 86 13-101 40-127 (175)
19 KOG1259 Nischarin, modulator o 98.8 9.3E-10 2E-14 87.1 -0.4 83 13-99 282-364 (490)
20 KOG0444 Cytoskeletal regulator 98.8 1.8E-09 3.9E-14 92.9 1.3 107 14-122 77-185 (1255)
21 KOG0618 Serine/threonine phosp 98.7 1.1E-09 2.4E-14 97.2 -2.4 107 12-121 356-463 (1081)
22 PLN03210 Resistant to P. syrin 98.7 9.7E-08 2.1E-12 90.1 9.6 106 14-121 610-715 (1153)
23 KOG1259 Nischarin, modulator o 98.6 5.5E-09 1.2E-13 82.8 0.2 107 12-123 304-412 (490)
24 PRK15370 E3 ubiquitin-protein 98.6 9.7E-08 2.1E-12 85.8 8.1 79 13-100 197-275 (754)
25 PRK15387 E3 ubiquitin-protein 98.6 1.1E-07 2.3E-12 85.5 5.9 35 88-123 423-458 (788)
26 PRK15387 E3 ubiquitin-protein 98.6 6.4E-08 1.4E-12 86.8 4.5 81 16-105 383-463 (788)
27 PRK15370 E3 ubiquitin-protein 98.5 1.3E-07 2.9E-12 84.9 5.7 100 13-122 323-427 (754)
28 KOG0532 Leucine-rich repeat (L 98.5 9.8E-09 2.1E-13 87.2 -1.4 101 17-122 145-246 (722)
29 PLN03210 Resistant to P. syrin 98.5 6.7E-07 1.4E-11 84.5 9.3 105 13-119 776-902 (1153)
30 KOG1859 Leucine-rich repeat pr 98.5 5.5E-09 1.2E-13 91.0 -4.5 110 12-126 184-295 (1096)
31 PF12799 LRR_4: Leucine Rich r 98.5 2E-07 4.3E-12 53.2 3.3 36 16-52 2-37 (44)
32 KOG4579 Leucine-rich repeat (L 98.4 3.3E-08 7.2E-13 69.8 -0.7 87 16-106 54-141 (177)
33 PF12799 LRR_4: Leucine Rich r 98.3 4.1E-07 8.8E-12 51.9 2.9 37 39-76 1-37 (44)
34 COG4886 Leucine-rich repeat (L 98.3 2.6E-07 5.5E-12 77.5 2.6 102 15-120 116-219 (394)
35 KOG0532 Leucine-rich repeat (L 98.3 5.2E-08 1.1E-12 82.9 -1.9 105 12-121 118-222 (722)
36 cd00116 LRR_RI Leucine-rich re 98.3 1.7E-07 3.6E-12 76.0 0.1 87 14-100 80-178 (319)
37 KOG4658 Apoptotic ATPase [Sign 98.3 4.3E-07 9.4E-12 82.9 2.7 86 9-95 565-650 (889)
38 COG4886 Leucine-rich repeat (L 98.2 4.5E-07 9.8E-12 76.0 2.2 81 16-99 141-221 (394)
39 cd00116 LRR_RI Leucine-rich re 98.2 5.2E-07 1.1E-11 73.1 1.9 106 16-121 109-232 (319)
40 KOG4658 Apoptotic ATPase [Sign 98.2 7.6E-07 1.7E-11 81.4 2.3 94 11-105 541-636 (889)
41 KOG4579 Leucine-rich repeat (L 98.1 4.1E-07 9E-12 64.4 -1.4 95 9-106 71-165 (177)
42 KOG0531 Protein phosphatase 1, 98.0 2.2E-06 4.9E-11 72.5 1.6 85 12-101 92-176 (414)
43 KOG0531 Protein phosphatase 1, 97.9 4.7E-06 1E-10 70.6 1.6 103 13-120 70-172 (414)
44 KOG1644 U2-associated snRNP A' 97.9 2.3E-05 4.9E-10 59.0 4.9 100 18-121 22-124 (233)
45 KOG3207 Beta-tubulin folding c 97.9 3.1E-06 6.7E-11 70.2 -0.1 115 9-123 140-259 (505)
46 KOG1859 Leucine-rich repeat pr 97.7 1.1E-06 2.4E-11 77.1 -5.3 101 15-120 164-264 (1096)
47 KOG1644 U2-associated snRNP A' 97.7 4.5E-05 9.9E-10 57.4 3.9 85 13-100 40-126 (233)
48 KOG3207 Beta-tubulin folding c 97.6 1.7E-05 3.6E-10 66.0 1.0 87 13-100 220-314 (505)
49 KOG2982 Uncharacterized conser 97.2 0.00017 3.7E-09 57.6 2.2 97 4-100 60-159 (418)
50 KOG2739 Leucine-rich acidic nu 97.0 0.00048 1E-08 53.8 2.8 63 36-100 62-129 (260)
51 KOG2739 Leucine-rich acidic nu 97.0 0.00071 1.5E-08 52.8 3.2 87 31-119 35-125 (260)
52 KOG3665 ZYG-1-like serine/thre 96.7 0.0012 2.6E-08 59.4 3.0 90 8-99 141-232 (699)
53 PF00560 LRR_1: Leucine Rich R 96.7 0.00054 1.2E-08 32.7 0.5 19 17-36 2-20 (22)
54 KOG3665 ZYG-1-like serine/thre 96.6 0.0016 3.5E-08 58.6 3.0 61 14-76 172-233 (699)
55 KOG1909 Ran GTPase-activating 96.4 0.001 2.2E-08 54.1 0.6 112 11-122 181-310 (382)
56 PF00560 LRR_1: Leucine Rich R 96.4 0.00099 2.1E-08 31.8 0.3 19 41-60 2-20 (22)
57 KOG2123 Uncharacterized conser 96.3 0.0004 8.7E-09 55.0 -2.1 84 7-93 33-123 (388)
58 PRK15386 type III secretion pr 96.3 0.0096 2.1E-07 50.2 5.8 54 14-73 51-104 (426)
59 KOG0473 Leucine-rich repeat pr 95.7 0.00015 3.3E-09 55.9 -6.8 83 15-100 42-124 (326)
60 KOG1909 Ran GTPase-activating 95.3 0.014 3E-07 47.7 2.5 88 13-100 155-254 (382)
61 PRK15386 type III secretion pr 95.1 0.053 1.1E-06 45.8 5.6 70 11-96 68-141 (426)
62 PF13504 LRR_7: Leucine rich r 94.9 0.015 3.3E-07 25.7 1.1 11 65-75 3-13 (17)
63 KOG2123 Uncharacterized conser 94.5 0.0034 7.4E-08 49.9 -2.7 85 14-103 18-104 (388)
64 KOG0473 Leucine-rich repeat pr 94.0 0.0014 3.1E-08 50.7 -5.5 87 33-121 36-122 (326)
65 smart00369 LRR_TYP Leucine-ric 93.5 0.074 1.6E-06 26.1 2.0 13 16-28 3-15 (26)
66 smart00370 LRR Leucine-rich re 93.5 0.074 1.6E-06 26.1 2.0 13 16-28 3-15 (26)
67 PF13306 LRR_5: Leucine rich r 93.0 0.15 3.3E-06 35.3 3.8 83 12-97 9-91 (129)
68 PF08693 SKG6: Transmembrane a 93.0 0.13 2.8E-06 28.3 2.6 16 163-178 21-36 (40)
69 smart00370 LRR Leucine-rich re 93.0 0.11 2.4E-06 25.5 2.2 14 63-76 2-15 (26)
70 smart00369 LRR_TYP Leucine-ric 93.0 0.11 2.4E-06 25.5 2.2 14 63-76 2-15 (26)
71 KOG2982 Uncharacterized conser 92.7 0.092 2E-06 42.5 2.5 64 12-75 94-158 (418)
72 PF13306 LRR_5: Leucine rich r 92.4 0.16 3.4E-06 35.2 3.2 82 11-96 31-112 (129)
73 COG5238 RNA1 Ran GTPase-activa 92.1 0.073 1.6E-06 42.5 1.2 89 12-100 27-133 (388)
74 COG5238 RNA1 Ran GTPase-activa 90.8 0.51 1.1E-05 37.9 4.7 85 14-99 91-197 (388)
75 PF15102 TMEM154: TMEM154 prot 90.7 0.16 3.4E-06 36.4 1.7 31 155-186 59-89 (146)
76 PF04478 Mid2: Mid2 like cell 90.6 0.33 7.1E-06 35.0 3.2 20 154-173 51-70 (154)
77 PF12273 RCR: Chitin synthesis 89.5 0.28 6.1E-06 34.6 2.2 10 166-175 9-18 (130)
78 PF01102 Glycophorin_A: Glycop 88.7 0.25 5.4E-06 34.4 1.4 16 159-174 67-82 (122)
79 smart00364 LRR_BAC Leucine-ric 87.9 0.38 8.2E-06 23.8 1.3 13 16-28 3-15 (26)
80 PF01102 Glycophorin_A: Glycop 87.5 0.22 4.8E-06 34.7 0.5 23 154-176 66-88 (122)
81 smart00365 LRR_SD22 Leucine-ri 86.8 0.57 1.2E-05 23.2 1.7 13 16-28 3-15 (26)
82 PF13516 LRR_6: Leucine Rich r 85.8 0.098 2.1E-06 25.1 -1.4 12 64-75 3-14 (24)
83 KOG2120 SCF ubiquitin ligase, 85.4 0.056 1.2E-06 43.7 -3.7 85 16-100 186-273 (419)
84 PF08374 Protocadherin: Protoc 83.6 1.8 3.9E-05 33.1 3.8 7 158-164 40-46 (221)
85 PF13908 Shisa: Wnt and FGF in 83.1 1.9 4.2E-05 32.1 3.9 22 155-176 78-99 (179)
86 PF02009 Rifin_STEVOR: Rifin/s 81.6 0.81 1.8E-05 37.1 1.4 6 175-180 278-283 (299)
87 PF04478 Mid2: Mid2 like cell 81.4 0.76 1.7E-05 33.2 1.1 24 155-178 48-71 (154)
88 KOG2120 SCF ubiquitin ligase, 81.2 1 2.2E-05 36.7 1.8 87 9-97 280-373 (419)
89 smart00368 LRR_RI Leucine rich 81.0 1.5 3.2E-05 21.9 1.8 12 40-51 3-14 (28)
90 PF06697 DUF1191: Protein of u 80.4 2.9 6.3E-05 33.4 4.1 16 156-171 214-229 (278)
91 PF15050 SCIMP: SCIMP protein 80.3 1.1 2.4E-05 30.8 1.5 24 166-190 18-41 (133)
92 PF01034 Syndecan: Syndecan do 80.1 0.53 1.1E-05 28.7 -0.1 16 157-172 14-29 (64)
93 TIGR00864 PCC polycystin catio 77.3 1.8 3.9E-05 44.7 2.6 32 70-101 2-33 (2740)
94 PF14575 EphA2_TM: Ephrin type 77.0 1.5 3.3E-05 27.7 1.4 7 175-181 21-27 (75)
95 PTZ00382 Variant-specific surf 75.8 1.6 3.4E-05 29.1 1.2 8 170-177 85-92 (96)
96 PF12191 stn_TNFRSF12A: Tumour 74.5 0.82 1.8E-05 31.8 -0.4 13 175-187 98-110 (129)
97 PTZ00046 rifin; Provisional 73.9 2.4 5.3E-05 35.1 2.1 16 170-185 332-347 (358)
98 PF05454 DAG1: Dystroglycan (D 72.9 1.1 2.5E-05 36.0 0.0 29 158-186 150-178 (290)
99 TIGR01477 RIFIN variant surfac 72.7 2.7 5.9E-05 34.7 2.1 16 170-185 327-342 (353)
100 PF08114 PMP1_2: ATPase proteo 71.4 8 0.00017 21.2 3.0 8 180-187 31-38 (43)
101 PF03229 Alpha_GJ: Alphavirus 69.7 11 0.00024 25.9 4.1 10 156-165 87-96 (126)
102 PRK11677 hypothetical protein; 68.7 1.3 2.8E-05 31.5 -0.5 17 162-178 7-23 (134)
103 PF07204 Orthoreo_P10: Orthore 67.3 3.5 7.5E-05 27.1 1.3 29 153-183 41-69 (98)
104 COG3105 Uncharacterized protei 66.3 1.5 3.3E-05 30.6 -0.5 20 161-180 11-30 (138)
105 PF15069 FAM163: FAM163 family 66.2 8 0.00017 27.6 3.1 24 156-179 6-29 (143)
106 KOG3763 mRNA export factor TAP 63.8 4.5 9.7E-05 35.5 1.7 61 15-77 218-284 (585)
107 PF07406 NICE-3: NICE-3 protei 62.9 12 0.00025 28.3 3.6 20 169-188 23-42 (186)
108 PF14991 MLANA: Protein melan- 62.6 2.2 4.7E-05 29.1 -0.3 6 158-163 28-33 (118)
109 KOG3864 Uncharacterized conser 60.9 1.6 3.5E-05 33.3 -1.2 80 17-96 103-185 (221)
110 TIGR00864 PCC polycystin catio 60.7 6.3 0.00014 41.1 2.3 32 21-52 1-32 (2740)
111 PF03672 UPF0154: Uncharacteri 60.6 11 0.00024 23.0 2.6 24 162-188 4-27 (64)
112 PF06295 DUF1043: Protein of u 59.9 2.4 5.2E-05 29.8 -0.4 15 163-177 4-18 (128)
113 PF11980 DUF3481: Domain of un 59.3 6.8 0.00015 25.2 1.5 34 154-187 16-50 (87)
114 PF12259 DUF3609: Protein of u 58.3 17 0.00036 30.5 4.2 11 189-199 332-342 (361)
115 PF14610 DUF4448: Protein of u 57.5 7 0.00015 29.4 1.7 16 156-171 159-174 (189)
116 PHA03099 epidermal growth fact 56.8 6.6 0.00014 27.5 1.3 12 123-134 68-82 (139)
117 PF04971 Lysis_S: Lysis protei 56.4 13 0.00028 23.0 2.4 23 157-179 34-56 (68)
118 PF11770 GAPT: GRB2-binding ad 56.1 1.6 3.6E-05 31.3 -1.8 25 157-181 12-36 (158)
119 KOG3763 mRNA export factor TAP 55.4 6.3 0.00014 34.7 1.2 35 63-97 218-254 (585)
120 PF12768 Rax2: Cortical protei 52.9 15 0.00033 29.6 3.0 24 158-181 233-256 (281)
121 PRK01844 hypothetical protein; 52.2 13 0.00027 23.3 1.9 26 163-191 12-37 (72)
122 KOG1947 Leucine rich repeat pr 52.1 12 0.00025 31.8 2.4 88 11-98 210-306 (482)
123 PF15050 SCIMP: SCIMP protein 51.5 4.5 9.8E-05 27.9 -0.2 29 153-181 8-36 (133)
124 PF13703 PepSY_TM_2: PepSY-ass 50.9 13 0.00028 24.1 1.9 21 158-178 19-39 (88)
125 PRK00523 hypothetical protein; 50.2 14 0.00029 23.2 1.8 24 165-191 15-38 (72)
126 PF06365 CD34_antigen: CD34/Po 50.1 12 0.00025 28.6 1.8 11 176-186 124-134 (202)
127 PF02038 ATP1G1_PLM_MAT8: ATP1 49.2 29 0.00064 20.0 2.9 18 160-177 18-35 (50)
128 PF06667 PspB: Phage shock pro 48.0 9.4 0.0002 24.2 0.9 18 165-182 13-30 (75)
129 PF10577 UPF0560: Uncharacteri 47.8 6.2 0.00013 36.2 0.0 14 174-187 294-307 (807)
130 PF15330 SIT: SHP2-interacting 47.5 14 0.0003 25.2 1.7 17 163-179 7-23 (107)
131 PF03302 VSP: Giardia variant- 44.6 16 0.00034 31.1 2.0 22 156-177 369-390 (397)
132 PF15176 LRR19-TM: Leucine-ric 43.2 18 0.00039 24.2 1.7 15 157-171 19-33 (102)
133 PF15345 TMEM51: Transmembrane 42.6 52 0.0011 25.6 4.3 7 154-160 60-66 (233)
134 PF14851 FAM176: FAM176 family 42.5 11 0.00024 27.4 0.7 20 155-174 24-43 (153)
135 COG1288 Predicted membrane pro 42.4 31 0.00068 29.7 3.3 27 180-206 234-260 (481)
136 PF05624 LSR: Lipolysis stimul 38.0 47 0.001 18.8 2.5 12 161-172 8-19 (49)
137 smart00367 LRR_CC Leucine-rich 37.2 26 0.00057 16.7 1.4 10 64-73 3-12 (26)
138 KOG3637 Vitronectin receptor, 36.4 32 0.00069 33.1 2.8 26 152-177 976-1001(1030)
139 PHA03265 envelope glycoprotein 36.4 45 0.00098 27.7 3.3 7 155-161 350-356 (402)
140 PHA03164 hypothetical protein; 35.3 12 0.00026 23.6 -0.1 19 158-176 63-81 (88)
141 PF06716 DUF1201: Protein of u 35.3 82 0.0018 17.8 3.2 9 188-196 38-46 (54)
142 PF05725 FNIP: FNIP Repeat; I 35.1 48 0.001 18.2 2.4 13 10-22 7-19 (44)
143 PF06697 DUF1191: Protein of u 34.8 1.1E+02 0.0025 24.6 5.3 35 154-189 216-250 (278)
144 TIGR02976 phageshock_pspB phag 34.6 22 0.00047 22.5 1.0 10 172-181 20-29 (75)
145 PF10389 CoatB: Bacteriophage 34.3 37 0.00079 19.3 1.8 15 162-176 25-39 (46)
146 PF06305 DUF1049: Protein of u 33.7 24 0.00053 21.3 1.1 10 165-174 28-37 (68)
147 PF15179 Myc_target_1: Myc tar 33.3 29 0.00062 26.0 1.6 11 158-168 22-32 (197)
148 PF10669 Phage_Gp23: Protein g 32.9 31 0.00066 22.9 1.5 11 178-188 40-50 (121)
149 PHA03099 epidermal growth fact 32.5 21 0.00045 25.1 0.7 14 157-170 101-114 (139)
150 KOG4308 LRR-containing protein 32.4 2.7 5.8E-05 36.6 -4.5 86 15-100 204-303 (478)
151 PF01299 Lamp: Lysosome-associ 31.4 21 0.00045 29.1 0.7 19 157-175 271-290 (306)
152 PF12732 YtxH: YtxH-like prote 31.1 55 0.0012 20.3 2.5 23 158-180 2-24 (74)
153 PF12877 DUF3827: Domain of un 30.8 49 0.0011 29.9 2.8 8 156-163 270-277 (684)
154 PF11120 DUF2636: Protein of u 29.7 69 0.0015 19.5 2.6 22 162-183 11-32 (62)
155 smart00082 LRRCT Leucine rich 29.3 29 0.00063 19.4 0.9 9 120-128 1-9 (51)
156 PF02158 Neuregulin: Neureguli 29.0 18 0.0004 30.2 0.0 7 160-166 14-20 (404)
157 PF08374 Protocadherin: Protoc 28.3 29 0.00063 26.7 0.9 22 155-176 40-61 (221)
158 PRK10132 hypothetical protein; 27.5 59 0.0013 22.2 2.2 11 166-176 95-105 (108)
159 PRK09458 pspB phage shock prot 27.3 35 0.00075 21.6 1.0 17 167-183 15-31 (75)
160 PF02480 Herpes_gE: Alphaherpe 27.0 21 0.00045 30.8 0.0 20 156-175 353-372 (439)
161 COG3763 Uncharacterized protei 26.8 74 0.0016 19.8 2.4 30 159-191 8-37 (71)
162 PHA02088 hypothetical protein 26.8 48 0.001 22.1 1.6 17 170-186 14-30 (125)
163 PF01788 PsbJ: PsbJ; InterPro 26.7 39 0.00085 18.4 1.0 19 157-175 11-29 (40)
164 PF10725 DUF2517: Protein of u 26.7 49 0.0011 19.9 1.5 25 175-199 29-54 (63)
165 PF15102 TMEM154: TMEM154 prot 24.7 39 0.00084 24.4 1.0 24 158-181 58-81 (146)
166 PF04995 CcmD: Heme exporter p 24.6 54 0.0012 18.4 1.4 6 162-167 12-17 (46)
167 PF02430 AMA-1: Apical membran 24.4 25 0.00054 30.2 0.0 21 167-187 440-460 (471)
168 PF10661 EssA: WXG100 protein 24.1 44 0.00096 24.1 1.2 17 158-174 121-137 (145)
169 TIGR00383 corA magnesium Mg(2+ 23.9 49 0.0011 26.8 1.6 13 170-182 305-317 (318)
170 KOG1834 Calsyntenin [Extracell 23.8 66 0.0014 29.3 2.4 23 155-177 829-851 (952)
171 PF02404 SCF: Stem cell factor 23.7 26 0.00057 27.7 0.0 24 153-176 214-237 (273)
172 PRK09546 zntB zinc transporter 23.4 53 0.0011 26.9 1.7 11 172-182 313-323 (324)
173 PHA02662 ORF131 putative membr 23.2 33 0.00072 26.5 0.5 8 170-177 201-208 (226)
174 KOG1094 Discoidin domain recep 22.3 96 0.0021 28.1 3.1 6 158-163 393-398 (807)
175 PF11353 DUF3153: Protein of u 21.9 50 0.0011 25.3 1.2 14 154-167 180-193 (209)
176 PF09435 DUF2015: Fungal prote 21.9 79 0.0017 22.2 2.1 18 168-185 12-29 (128)
177 PF13807 GNVR: G-rich domain o 21.6 44 0.00095 21.2 0.7 13 157-169 62-74 (82)
178 TIGR03493 cellullose_BcsF cell 21.4 1.2E+02 0.0026 18.3 2.5 23 162-184 11-33 (62)
179 COG0598 CorA Mg2+ and Co2+ tra 21.3 62 0.0013 26.5 1.7 19 164-182 303-321 (322)
180 PF14654 Epiglycanin_C: Mucin, 21.0 52 0.0011 21.9 1.0 25 153-177 17-41 (106)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.85 E-value=9.4e-21 Score=166.45 Aligned_cols=118 Identities=36% Similarity=0.657 Sum_probs=106.5
Q ss_pred cccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCC
Q 046642 16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVS 95 (207)
Q Consensus 16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~ 95 (207)
.++.|+|++|.++|.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|+.++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcCCCCCCCC--CCCCCcccccCCCCCCCCCCCCCCC
Q 046642 96 DNLLTGPIPRGKQ--FDTFGKSSFDGNPGLCGGPLSKKCD 133 (207)
Q Consensus 96 ~N~l~~~~p~~~~--~~~l~~~~~~~n~~~c~~~~~~~C~ 133 (207)
+|.++|.+|.... ...+..+++.+|+.+|+.+....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997532 2344567899999999987666674
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=1.3e-18 Score=160.39 Aligned_cols=116 Identities=39% Similarity=0.631 Sum_probs=103.6
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+.+|+.
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 45678888999999998889999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCCC
Q 046642 92 FDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 92 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 127 (207)
+++++|++.|.+|...++..+....+.||+.+|+.+
T Consensus 576 l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 576 VNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred EeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999988888888888899999999754
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.61 E-value=4.4e-15 Score=137.09 Aligned_cols=114 Identities=36% Similarity=0.541 Sum_probs=103.0
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ 93 (207)
.++|+.|++++|.+++..|..+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus 474 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 553 (968)
T PLN00113 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553 (968)
T ss_pred cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCC
Q 046642 94 VSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 94 l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 127 (207)
+++|++++.+|.. ..+..+..+++.+|+..+..|
T Consensus 554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999999988875 456678888999998876554
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.28 E-value=1e-11 Score=109.70 Aligned_cols=86 Identities=36% Similarity=0.561 Sum_probs=78.1
Q ss_pred CCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCCC-CCCCCCCcccccC
Q 046642 41 LRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG-KQFDTFGKSSFDG 119 (207)
Q Consensus 41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~ 119 (207)
++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..+..+++|+.|++++|+++|.+|.. ..+..+..+++.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 788999999999999999999999999999999999999999999999999999999999999874 5677888888988
Q ss_pred CCCCCCC
Q 046642 120 NPGLCGG 126 (207)
Q Consensus 120 n~~~c~~ 126 (207)
|...+..
T Consensus 500 N~l~g~i 506 (623)
T PLN03150 500 NSLSGRV 506 (623)
T ss_pred CcccccC
Confidence 8765543
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.24 E-value=6.7e-13 Score=96.89 Aligned_cols=83 Identities=34% Similarity=0.567 Sum_probs=50.9
Q ss_pred ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642 15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV 94 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l 94 (207)
.+++.|-||+|.++ .+|+.+..+.+|+.|++++|++. .+|.+++.++.|+.|+++.|++. ..|..|+.++.|+.||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 34555666666666 55556666666666666666665 55666666666666666666666 55666666666666666
Q ss_pred CCCcCc
Q 046642 95 SDNLLT 100 (207)
Q Consensus 95 ~~N~l~ 100 (207)
..|++.
T Consensus 110 tynnl~ 115 (264)
T KOG0617|consen 110 TYNNLN 115 (264)
T ss_pred cccccc
Confidence 655554
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=2.1e-12 Score=94.26 Aligned_cols=108 Identities=28% Similarity=0.357 Sum_probs=94.2
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCC-CCCchhhhcCCccce
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS-GNIPQQLSELTSLEF 91 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~ 91 (207)
-+.+|++|++++|+|+ .+|..++.++.|+.|+++-|++. ..|..|+.++.|+.||+.+|.+. ..+|..|..+..|+.
T Consensus 54 ~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence 3678999999999999 89999999999999999999998 89999999999999999999995 368889999999999
Q ss_pred ecCCCCcCcCCCCCCCCCCCCCcccccCCCC
Q 046642 92 FDVSDNLLTGPIPRGKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 92 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 122 (207)
|++++|.|.-..|+..++..++-+.+..|..
T Consensus 132 lyl~dndfe~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 132 LYLGDNDFEILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred HHhcCCCcccCChhhhhhcceeEEeeccCch
Confidence 9999999995555556666676666666643
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.14 E-value=2e-11 Score=75.18 Aligned_cols=61 Identities=43% Similarity=0.530 Sum_probs=40.0
Q ss_pred ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCC
Q 046642 15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNML 75 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 75 (207)
++|++|++++|.|+...+..|.++++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566777777777654445666677777777777777655556666666777777666653
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.12 E-value=3.7e-12 Score=107.97 Aligned_cols=106 Identities=25% Similarity=0.323 Sum_probs=53.8
Q ss_pred ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCch---hhhcCCccce
Q 046642 15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ---QLSELTSLEF 91 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~---~~~~l~~L~~ 91 (207)
..|++|+|++|.|+...+..|..|..|+.|+|+.|+++...-..|..+.+|+.|||++|.+++.+.+ .|..+++|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 3344444444444433333344444444444444444333333444555555555555555544433 2445566666
Q ss_pred ecCCCCcCcCCCCCC--CCCCCCCcccccCCC
Q 046642 92 FDVSDNLLTGPIPRG--KQFDTFGKSSFDGNP 121 (207)
Q Consensus 92 l~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~ 121 (207)
|++.+|++. .+|+. ..+..++.+++.+|+
T Consensus 397 L~l~gNqlk-~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 397 LRLTGNQLK-SIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred eeecCceee-ecchhhhccCcccceecCCCCc
Confidence 666666665 45543 356667777887776
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=4.5e-11 Score=88.85 Aligned_cols=105 Identities=27% Similarity=0.411 Sum_probs=38.7
Q ss_pred hcccccEEEccCCCCCCCCchhcc-CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhh-hcCCccc
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIA-NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQL-SELTSLE 90 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~ 90 (207)
-+..++.|+|++|.|+ .+. .++ .+.+|+.||+++|.++ .++ .+..++.|+.|++++|.|+ .+++.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 3446789999999998 443 455 5889999999999998 454 5788999999999999999 555444 4689999
Q ss_pred eecCCCCcCcCC--CCCCCCCCCCCcccccCCCC
Q 046642 91 FFDVSDNLLTGP--IPRGKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 91 ~l~l~~N~l~~~--~p~~~~~~~l~~~~~~~n~~ 122 (207)
.|++++|++... +-....++.+..+++.|||.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 999999999742 11223567778888999985
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.10 E-value=8.9e-12 Score=105.68 Aligned_cols=120 Identities=23% Similarity=0.305 Sum_probs=100.8
Q ss_pred hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc---ccCCCCCCCCEEecCCCCCCCCCchhhhcC
Q 046642 10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP---LSLSNLTAIESMDLSSNMLSGNIPQQLSEL 86 (207)
Q Consensus 10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l 86 (207)
-+..+..|+.|.|++|.|+..-...|..+.+|+.|||++|.+++.+- ..|..|++|+.|++.+|++.......|..+
T Consensus 336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl 415 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL 415 (873)
T ss_pred HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccC
Confidence 35678899999999999998888889999999999999999987654 357889999999999999995555689999
Q ss_pred CccceecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCCCCC
Q 046642 87 TSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLS 129 (207)
Q Consensus 87 ~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~ 129 (207)
..|++|||.+|.+....|....--.+..+-+....++|+|.+.
T Consensus 416 ~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 416 EALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred cccceecCCCCcceeecccccccchhhhhhhcccceEEeccHH
Confidence 9999999999999976666533335667777778899999653
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=8.5e-12 Score=101.29 Aligned_cols=127 Identities=24% Similarity=0.274 Sum_probs=98.8
Q ss_pred cccchhhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCC-CCCCCCCch
Q 046642 3 NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS-NMLSGNIPQ 81 (207)
Q Consensus 3 ~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~ 81 (207)
.+|+.....+++...+.++|..|.|+...|..|+.+++|+.||||.|.|+.+-|++|..+++|..|-+-+ |+|+....+
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 5777788889999999999999999988888999999999999999999988999999999887766655 999855556
Q ss_pred hhhcCCccceecCCCCcCcCCCCC-----------------------C--CCCCCCCcccccCCCCCCCCCCC
Q 046642 82 QLSELTSLEFFDVSDNLLTGPIPR-----------------------G--KQFDTFGKSSFDGNPGLCGGPLS 129 (207)
Q Consensus 82 ~~~~l~~L~~l~l~~N~l~~~~p~-----------------------~--~~~~~l~~~~~~~n~~~c~~~~~ 129 (207)
.|+.+.+|+.|.+.-|++.+.... . ..+.....+-+..||+.|+|.+.
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 788887777777777766643211 1 11223344556679999988664
No 12
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=4.4e-11 Score=73.64 Aligned_cols=61 Identities=44% Similarity=0.626 Sum_probs=55.8
Q ss_pred CCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcC
Q 046642 39 KGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLL 99 (207)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l 99 (207)
++|+.|++++|+++...+..|..+++|+.|++++|.++...|+.|..+++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999966668999999999999999999977778999999999999999975
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.01 E-value=2.8e-11 Score=98.70 Aligned_cols=106 Identities=23% Similarity=0.336 Sum_probs=78.2
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCC---------------------CCcccC-CCCCCCCEEecC
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG---------------------RIPLSL-SNLTAIESMDLS 71 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~---------------------~~p~~~-~~l~~L~~L~ls 71 (207)
++.|+.||...|-++ .+|+.++.|.+|+.|+|..|++.. .+|... +.+++|.+||+.
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc
Confidence 455556666666655 556666666666666666655541 333333 378899999999
Q ss_pred CCCCCCCCchhhhcCCccceecCCCCcCcCCCCCCCCCCCCCcccccCCCC
Q 046642 72 SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 72 ~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 122 (207)
+|+++ +.|+.+.-+.+|..||+|+|.+++..+..+.+ .+..+.+.|||.
T Consensus 261 dNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 261 DNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 99999 89999999999999999999999777766666 777788899983
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.97 E-value=1.8e-10 Score=94.02 Aligned_cols=112 Identities=26% Similarity=0.334 Sum_probs=89.9
Q ss_pred hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642 10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89 (207)
Q Consensus 10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 89 (207)
+-+.+++|+.|+|++|-+. .+|.+++.+..|+.||++.|++. .+|..+..+..|+.+-.++|++....|+.+.++.+|
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 3456777888888888887 78888888888888888888887 778777777777777777788886666668889999
Q ss_pred ceecCCCCcCcCCCCCCCCCCCCCcccccCCCCC
Q 046642 90 EFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123 (207)
Q Consensus 90 ~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 123 (207)
..||+.+|.+....|..+....+..+.+.|||+-
T Consensus 508 ~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 9999999999865566677888888899999864
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.96 E-value=1.1e-10 Score=100.06 Aligned_cols=83 Identities=36% Similarity=0.477 Sum_probs=46.4
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc-ccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP-LSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
+..|+.||||+|+++ .+|..+..-+++..|+||+|+|. .+| +-|-++..|-.||||+|++. .+|..+..+..|++|
T Consensus 102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 445555566666655 55555555555556666666655 333 33445555555666666655 445555555556666
Q ss_pred cCCCCcC
Q 046642 93 DVSDNLL 99 (207)
Q Consensus 93 ~l~~N~l 99 (207)
+|++|++
T Consensus 179 ~Ls~NPL 185 (1255)
T KOG0444|consen 179 KLSNNPL 185 (1255)
T ss_pred hcCCChh
Confidence 6666554
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.94 E-value=1.2e-10 Score=103.14 Aligned_cols=109 Identities=27% Similarity=0.409 Sum_probs=87.0
Q ss_pred hhhcccccEEEccCCCCCCCCch-hccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 89 (207)
.....+|++|+|++|.+. .+|. .+.++..|+.|+||+|+++ .+|..+.++..|++|...+|.+. .+| .+..++.|
T Consensus 379 l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL 454 (1081)
T ss_pred hccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence 345677888899999887 4554 4678888888999999988 78888888888899988889888 777 68889999
Q ss_pred ceecCCCCcCcC-CCCCCCCCCCCCcccccCCCCC
Q 046642 90 EFFDVSDNLLTG-PIPRGKQFDTFGKSSFDGNPGL 123 (207)
Q Consensus 90 ~~l~l~~N~l~~-~~p~~~~~~~l~~~~~~~n~~~ 123 (207)
+.+|++.|+++. .+|....-+.+..++++||+++
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred eEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 999999999874 3343333367889999999863
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.93 E-value=7.3e-10 Score=90.23 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=53.1
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
++.+++|+.|+|++|.|++.-+..|.++..++.|.|..|++.......|.++..|+.|+|.+|+|+...|..|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 45556666666666666655555666666666666666666544445555566666666666666655555566666666
Q ss_pred eecCCCCcCc
Q 046642 91 FFDVSDNLLT 100 (207)
Q Consensus 91 ~l~l~~N~l~ 100 (207)
.|++-.|++.
T Consensus 350 ~l~l~~Np~~ 359 (498)
T KOG4237|consen 350 TLNLLSNPFN 359 (498)
T ss_pred eeehccCccc
Confidence 6666555543
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=9.5e-10 Score=81.77 Aligned_cols=86 Identities=29% Similarity=0.412 Sum_probs=42.3
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccC-CCCCCCCEEecCCCCCCCCCc-hhhhcCCccc
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL-SNLTAIESMDLSSNMLSGNIP-QQLSELTSLE 90 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~ 90 (207)
.+.+|+.|+|++|.|+ .++ .+..++.|+.|++++|+++ .++..+ ..+++|+.|++++|+|...-- ..+..+++|+
T Consensus 40 ~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp T-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 4678999999999999 444 4788999999999999998 454444 468999999999999974211 4577899999
Q ss_pred eecCCCCcCcC
Q 046642 91 FFDVSDNLLTG 101 (207)
Q Consensus 91 ~l~l~~N~l~~ 101 (207)
.|++.+|+++.
T Consensus 117 ~L~L~~NPv~~ 127 (175)
T PF14580_consen 117 VLSLEGNPVCE 127 (175)
T ss_dssp EEE-TT-GGGG
T ss_pred eeeccCCcccc
Confidence 99999999973
No 19
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=9.3e-10 Score=87.07 Aligned_cols=83 Identities=25% Similarity=0.337 Sum_probs=52.8
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
-...|+.||||+|.|+ .+..+..-++.++.|++|+|.+. .+ +.+..+++|+.||||+|.++ .+..+-..+.+.+.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 3455777778888777 66666666777777777777776 33 33667777777777777766 344444444444444
Q ss_pred cCCCCcC
Q 046642 93 DVSDNLL 99 (207)
Q Consensus 93 ~l~~N~l 99 (207)
.+++|.+
T Consensus 358 ~La~N~i 364 (490)
T KOG1259|consen 358 KLAQNKI 364 (490)
T ss_pred ehhhhhH
Confidence 4444443
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.78 E-value=1.8e-09 Score=92.89 Aligned_cols=107 Identities=31% Similarity=0.444 Sum_probs=88.2
Q ss_pred cccccEEEccCCCCC-CCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCc-hhhhcCCccce
Q 046642 14 SNLITAIILSNNSFV-GEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP-QQLSELTSLEF 91 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~ 91 (207)
++.|+.+++.+|+++ ..+|..+..|..|+.||||+|++. ..|..+..-.++-+|+||+|+|. .+| ..|.+++.|-+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 566788889999987 467888889999999999999998 88998888899999999999998 555 45778899999
Q ss_pred ecCCCCcCcCCCCCCCCCCCCCcccccCCCC
Q 046642 92 FDVSDNLLTGPIPRGKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 92 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 122 (207)
||||+|++....|....+..+..+.+++||.
T Consensus 155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred hccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence 9999999986666655566667777777774
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.70 E-value=1.1e-09 Score=97.16 Aligned_cols=107 Identities=25% Similarity=0.378 Sum_probs=94.3
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc-ccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP-LSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
.....|+.|++.+|.++..+-+.+.++++|+.|+|++|++. .+| ..+.++..|++|+||+|.++ .+|+.+..+..|+
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH 433 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH
Confidence 34567888999999999988888999999999999999998 555 56788999999999999999 8899999999999
Q ss_pred eecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642 91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~ 121 (207)
+|...+|.+. ..|...++..+..++++.|.
T Consensus 434 tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 434 TLRAHSNQLL-SFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred HHhhcCCcee-echhhhhcCcceEEecccch
Confidence 9999999998 77887777888878877663
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.68 E-value=9.7e-08 Score=90.09 Aligned_cols=106 Identities=23% Similarity=0.343 Sum_probs=74.7
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ 93 (207)
+.+|+.|++++|.+. .++..+..+++|+.|+|+++...+.+| .+..+++|+.|++++|.....+|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 356677777777776 566667777888888887765444566 367778888888888766557888888888888888
Q ss_pred CCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642 94 VSDNLLTGPIPRGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 94 l~~N~l~~~~p~~~~~~~l~~~~~~~n~ 121 (207)
+++|.....+|....+..+..+.+.++.
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 8886544566765555666666666653
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=5.5e-09 Score=82.76 Aligned_cols=107 Identities=27% Similarity=0.326 Sum_probs=85.4
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
++.+.++.|++|+|.|. .+. .+..+++|+.||||+|.++ .+-.+-..+.+++.|.|+.|.+.. + ..+..+-+|..
T Consensus 304 KL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvn 378 (490)
T KOG1259|consen 304 KLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVN 378 (490)
T ss_pred hhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhhee
Confidence 57889999999999997 443 3888999999999999998 666666788899999999999873 3 45778889999
Q ss_pred ecCCCCcCcC--CCCCCCCCCCCCcccccCCCCC
Q 046642 92 FDVSDNLLTG--PIPRGKQFDTFGKSSFDGNPGL 123 (207)
Q Consensus 92 l~l~~N~l~~--~~p~~~~~~~l~~~~~~~n~~~ 123 (207)
||+++|++.. .+...+.++.++.+.+.+||.-
T Consensus 379 LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 379 LDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 9999998873 2223345667777888888853
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.64 E-value=9.7e-08 Score=85.79 Aligned_cols=79 Identities=29% Similarity=0.572 Sum_probs=39.8
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
++++++.|+|++|.|+ .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|
T Consensus 197 Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L 267 (754)
T PRK15370 197 IPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSL 267 (754)
T ss_pred cccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEE
Confidence 5566777777777776 4554432 35666666666665 4444332 23444444444444 3333322 234444
Q ss_pred cCCCCcCc
Q 046642 93 DVSDNLLT 100 (207)
Q Consensus 93 ~l~~N~l~ 100 (207)
++++|+++
T Consensus 268 ~Ls~N~L~ 275 (754)
T PRK15370 268 DLFHNKIS 275 (754)
T ss_pred ECcCCccC
Confidence 44444443
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.56 E-value=1.1e-07 Score=85.50 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=18.3
Q ss_pred ccceecCCCCcCcCCCCCC-CCCCCCCcccccCCCCC
Q 046642 88 SLEFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGL 123 (207)
Q Consensus 88 ~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~ 123 (207)
+|+.|++++|+++ .+|.. ..+..+..+++.+|+..
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 3444555555555 34432 23445566677777654
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.56 E-value=6.4e-08 Score=86.85 Aligned_cols=81 Identities=23% Similarity=0.380 Sum_probs=54.0
Q ss_pred cccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCC
Q 046642 16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVS 95 (207)
Q Consensus 16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~ 95 (207)
+|+.|++++|.|+ .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|.++ .+|..+..+++|+.++++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 3444444444444 23321 234566666666665 34532 235677888888888 788889999999999999
Q ss_pred CCcCcCCCCC
Q 046642 96 DNLLTGPIPR 105 (207)
Q Consensus 96 ~N~l~~~~p~ 105 (207)
+|++++..|.
T Consensus 454 ~N~Ls~~~~~ 463 (788)
T PRK15387 454 GNPLSERTLQ 463 (788)
T ss_pred CCCCCchHHH
Confidence 9999987654
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.53 E-value=1.3e-07 Score=84.94 Aligned_cols=100 Identities=26% Similarity=0.432 Sum_probs=57.4
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
++++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+. ..|+.|
T Consensus 323 l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~L 393 (754)
T PRK15370 323 LPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIM 393 (754)
T ss_pred ccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHH
Confidence 3455666666666666 3554442 56777777777766 4555442 46777777777776 4555443 256677
Q ss_pred cCCCCcCcCCCCCC-----CCCCCCCcccccCCCC
Q 046642 93 DVSDNLLTGPIPRG-----KQFDTFGKSSFDGNPG 122 (207)
Q Consensus 93 ~l~~N~l~~~~p~~-----~~~~~l~~~~~~~n~~ 122 (207)
++++|+++ .+|.. .....+..+.+.+||.
T Consensus 394 dLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 394 QASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 77777776 34432 1123344556666664
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.52 E-value=9.8e-09 Score=87.21 Aligned_cols=101 Identities=29% Similarity=0.517 Sum_probs=57.9
Q ss_pred ccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCC
Q 046642 17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSD 96 (207)
Q Consensus 17 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~ 96 (207)
|++|.+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.|++..|.+. .+|..+..|+ |..||++.
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSC 220 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeeccc
Confidence 444555555555 45555555555555555555555 45555555555555555555555 4455555433 66777777
Q ss_pred CcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642 97 NLLTGPIPRG-KQFDTFGKSSFDGNPG 122 (207)
Q Consensus 97 N~l~~~~p~~-~~~~~l~~~~~~~n~~ 122 (207)
|+++ .+|.. ..+..+..+.+++||.
T Consensus 221 Nkis-~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 221 NKIS-YLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred Ccee-ecchhhhhhhhheeeeeccCCC
Confidence 7777 45543 4455666667777774
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.47 E-value=6.7e-07 Score=84.53 Aligned_cols=105 Identities=26% Similarity=0.407 Sum_probs=69.5
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCC---------------------CCCEEecC
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT---------------------AIESMDLS 71 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~---------------------~L~~L~ls 71 (207)
.+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .++ +|+.|+++
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls 854 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLS 854 (1153)
T ss_pred ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECC
Confidence 45688899999988777889999999999999998875433566443 333 45566666
Q ss_pred CCCCCCCCchhhhcCCccceecCCC-CcCcCCCCCCCCCCCCCcccccC
Q 046642 72 SNMLSGNIPQQLSELTSLEFFDVSD-NLLTGPIPRGKQFDTFGKSSFDG 119 (207)
Q Consensus 72 ~N~l~~~~p~~~~~l~~L~~l~l~~-N~l~~~~p~~~~~~~l~~~~~~~ 119 (207)
+|.++ .+|..+..+++|+.|++++ |++.+..+....+..+..+++.+
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence 66666 5677777788888888877 44553222223344444444443
No 30
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=5.5e-09 Score=91.03 Aligned_cols=110 Identities=26% Similarity=0.346 Sum_probs=82.2
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
.+++.++.|+|++|+++. +. .+..++.|+.|||+.|.+. .+|.--..-.+|+.|.+++|.++.. ..+.++.+|..
T Consensus 184 qll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~ 258 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYG 258 (1096)
T ss_pred HHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhc
Confidence 578899999999999984 33 7888999999999999998 6664332334599999999999843 45789999999
Q ss_pred ecCCCCcCcCC--CCCCCCCCCCCcccccCCCCCCCC
Q 046642 92 FDVSDNLLTGP--IPRGKQFDTFGKSSFDGNPGLCGG 126 (207)
Q Consensus 92 l~l~~N~l~~~--~p~~~~~~~l~~~~~~~n~~~c~~ 126 (207)
||++.|-+.+- +...-.+..+..+.+.|||.-|..
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 99999987741 111112233455678899977753
No 31
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.46 E-value=2e-07 Score=53.18 Aligned_cols=36 Identities=36% Similarity=0.608 Sum_probs=22.0
Q ss_pred cccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCC
Q 046642 16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQ 52 (207)
Q Consensus 16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~ 52 (207)
+|++|++++|+|+ .+|+.+.+|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 45555666666666666666665
No 32
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.42 E-value=3.3e-08 Score=69.82 Aligned_cols=87 Identities=28% Similarity=0.472 Sum_probs=71.0
Q ss_pred cccEEEccCCCCCCCCchhcc-CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642 16 LITAIILSNNSFVGEIPTSIA-NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV 94 (207)
Q Consensus 16 ~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l 94 (207)
.|+..+|++|.+. ..|+.|. .++.++.|+|++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 4566789999988 5666664 4568889999999998 78888999999999999999998 77888888888888998
Q ss_pred CCCcCcCCCCCC
Q 046642 95 SDNLLTGPIPRG 106 (207)
Q Consensus 95 ~~N~l~~~~p~~ 106 (207)
.+|.+. .+|..
T Consensus 131 ~~na~~-eid~d 141 (177)
T KOG4579|consen 131 PENARA-EIDVD 141 (177)
T ss_pred CCCccc-cCcHH
Confidence 888877 66654
No 33
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=4.1e-07 Score=51.89 Aligned_cols=37 Identities=49% Similarity=0.749 Sum_probs=23.0
Q ss_pred CCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCC
Q 046642 39 KGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS 76 (207)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 76 (207)
++|++|++++|+++ .+|..++++++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666777777766 45555666667777777766666
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=2.6e-07 Score=77.53 Aligned_cols=102 Identities=34% Similarity=0.581 Sum_probs=64.1
Q ss_pred ccccEEEccCCCCCCCCchhccCCC-CCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642 15 NLITAIILSNNSFVGEIPTSIANLK-GLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ 93 (207)
+.++.|++.+|.++ .+|.....+. +|+.|+++.|.+. .+|..+..+++|+.|++++|.++ .+|.....++.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 45677777777777 5555555553 7777777777776 55556677777777777777777 5555554666777777
Q ss_pred CCCCcCcCCCCCC-CCCCCCCcccccCC
Q 046642 94 VSDNLLTGPIPRG-KQFDTFGKSSFDGN 120 (207)
Q Consensus 94 l~~N~l~~~~p~~-~~~~~l~~~~~~~n 120 (207)
+++|+++ .+|.. .....+..+.+.+|
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 7777776 44443 12223444444444
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.32 E-value=5.2e-08 Score=82.90 Aligned_cols=105 Identities=28% Similarity=0.333 Sum_probs=81.4
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
..+..|+.|||+.|+++ .+|..+..|+ |+.|-+++|+++ .+|..++.+.+|..||.+.|.+. .+|..++.+.+|+.
T Consensus 118 ~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~ 193 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH
Confidence 45677888888888887 7777777777 888888888887 78888888888888888888888 67788888888888
Q ss_pred ecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642 92 FDVSDNLLTGPIPRGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 92 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~ 121 (207)
|++..|++....+... --.+..++|+.|.
T Consensus 194 l~vrRn~l~~lp~El~-~LpLi~lDfScNk 222 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELC-SLPLIRLDFSCNK 222 (722)
T ss_pred HHHhhhhhhhCCHHHh-CCceeeeecccCc
Confidence 8888888874333333 3346677787775
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.27 E-value=1.7e-07 Score=76.03 Aligned_cols=87 Identities=24% Similarity=0.321 Sum_probs=52.7
Q ss_pred cccccEEEccCCCCCCCCchhccCCCC---CCEEECcCCcCCC----CCcccCCCC-CCCCEEecCCCCCCCC----Cch
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKG---LRNLDLSNNNLQG----RIPLSLSNL-TAIESMDLSSNMLSGN----IPQ 81 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~---L~~L~Ls~n~l~~----~~p~~~~~l-~~L~~L~ls~N~l~~~----~p~ 81 (207)
+++|+.|++++|.+.+..+..+..+.+ |+.|++++|++.+ .+...+..+ ++|+.|++++|.+++. ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 457777777777776555555555544 7777777777652 122334445 6677777777776632 222
Q ss_pred hhhcCCccceecCCCCcCc
Q 046642 82 QLSELTSLEFFDVSDNLLT 100 (207)
Q Consensus 82 ~~~~l~~L~~l~l~~N~l~ 100 (207)
.+..+.+|+.|++++|.++
T Consensus 160 ~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 160 ALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHhCCCcCEEECcCCCCc
Confidence 3445556777777777665
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.27 E-value=4.3e-07 Score=82.95 Aligned_cols=86 Identities=33% Similarity=0.463 Sum_probs=46.0
Q ss_pred hhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCc
Q 046642 9 EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTS 88 (207)
Q Consensus 9 ~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~ 88 (207)
+|+..++.|++|||++|.=-+.+|..++.|-+|++|++++..+. .+|..+++|..|.+|++..+.-...+|.....+.+
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccc
Confidence 33445555555555554433455555555555555555555555 55555555555555555555443344444444555
Q ss_pred cceecCC
Q 046642 89 LEFFDVS 95 (207)
Q Consensus 89 L~~l~l~ 95 (207)
|++|.+.
T Consensus 644 Lr~L~l~ 650 (889)
T KOG4658|consen 644 LRVLRLP 650 (889)
T ss_pred ccEEEee
Confidence 5555553
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.25 E-value=4.5e-07 Score=76.03 Aligned_cols=81 Identities=38% Similarity=0.635 Sum_probs=66.7
Q ss_pred cccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCC
Q 046642 16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVS 95 (207)
Q Consensus 16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~ 95 (207)
+|+.|++++|.+. .+|..+..+++|+.|+++.|++. .+|...+.++.|+.|++++|.++ .+|........|..+.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 8899999999988 67677888999999999999998 67766668888999999999998 777766566668888888
Q ss_pred CCcC
Q 046642 96 DNLL 99 (207)
Q Consensus 96 ~N~l 99 (207)
+|.+
T Consensus 218 ~N~~ 221 (394)
T COG4886 218 NNSI 221 (394)
T ss_pred CCcc
Confidence 8853
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.22 E-value=5.2e-07 Score=73.13 Aligned_cols=106 Identities=20% Similarity=0.311 Sum_probs=63.0
Q ss_pred cccEEEccCCCCCC----CCchhccCC-CCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCCCCC----Cchh
Q 046642 16 LITAIILSNNSFVG----EIPTSIANL-KGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNMLSGN----IPQQ 82 (207)
Q Consensus 16 ~L~~L~Ls~n~i~~----~~p~~~~~l-~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~----~p~~ 82 (207)
+|+.|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+..+.+|+.|++++|.+++. ++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 37778888877763 222334455 7778888888877632 233455566777788877777642 2223
Q ss_pred hhcCCccceecCCCCcCcCCCCC-----CCCCCCCCcccccCCC
Q 046642 83 LSELTSLEFFDVSDNLLTGPIPR-----GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 83 ~~~l~~L~~l~l~~N~l~~~~p~-----~~~~~~l~~~~~~~n~ 121 (207)
+..+++|+.|++++|.+++.... ....+.+..+++.+|+
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 44456777777777776532111 1233456666666654
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.18 E-value=7.6e-07 Score=81.37 Aligned_cols=94 Identities=26% Similarity=0.366 Sum_probs=79.2
Q ss_pred hhhcccccEEEccCCC--CCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCc
Q 046642 11 EKLSNLITAIILSNNS--FVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTS 88 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~--i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~ 88 (207)
....+.|++|-+..|. +....++.|..++.|++|||++|.--+.+|..+++|-+|++|++++..++ .+|..+.++..
T Consensus 541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK 619 (889)
T ss_pred CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence 3344578899898886 55455556888999999999998877799999999999999999999999 89999999999
Q ss_pred cceecCCCCcCcCCCCC
Q 046642 89 LEFFDVSDNLLTGPIPR 105 (207)
Q Consensus 89 L~~l~l~~N~l~~~~p~ 105 (207)
|.+||+..+.....+|.
T Consensus 620 L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPG 636 (889)
T ss_pred hheeccccccccccccc
Confidence 99999998865444443
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=4.1e-07 Score=64.37 Aligned_cols=95 Identities=20% Similarity=0.293 Sum_probs=74.0
Q ss_pred hhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCc
Q 046642 9 EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTS 88 (207)
Q Consensus 9 ~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~ 88 (207)
.|...++.++.|+|++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|..|+..+|.+. .+|-.+-.-..
T Consensus 71 kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~ 147 (177)
T KOG4579|consen 71 KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSL 147 (177)
T ss_pred HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhcccc
Confidence 33344557888999999999 89999999999999999999998 78888888999999999999998 66654333233
Q ss_pred cceecCCCCcCcCCCCCC
Q 046642 89 LEFFDVSDNLLTGPIPRG 106 (207)
Q Consensus 89 L~~l~l~~N~l~~~~p~~ 106 (207)
.-..++.++.+.+..+..
T Consensus 148 ~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 148 PALIKLGNEPLGDETKKK 165 (177)
T ss_pred HHHHHhcCCcccccCccc
Confidence 344555666676655543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.00 E-value=2.2e-06 Score=72.49 Aligned_cols=85 Identities=32% Similarity=0.427 Sum_probs=57.0
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
..+.+++.|++.+|.|. .+...+..+++|+.|++++|.|+... .+..+..|+.|++++|.|+ .+ ..+..+..|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccchhhhc
Confidence 34566777778888877 34433566777888888888877332 3456666777777777777 33 23455777777
Q ss_pred ecCCCCcCcC
Q 046642 92 FDVSDNLLTG 101 (207)
Q Consensus 92 l~l~~N~l~~ 101 (207)
+++++|.+..
T Consensus 167 l~l~~n~i~~ 176 (414)
T KOG0531|consen 167 LDLSYNRIVD 176 (414)
T ss_pred ccCCcchhhh
Confidence 7777777763
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=4.7e-06 Score=70.57 Aligned_cols=103 Identities=27% Similarity=0.347 Sum_probs=78.4
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
.+..+..+.+..|.|. ..-..+..+++|+.|++..|.+. .+...+..+++|++|++++|.|+... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 4667777888999988 44455788999999999999998 45444788999999999999999543 36778889999
Q ss_pred cCCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642 93 DVSDNLLTGPIPRGKQFDTFGKSSFDGN 120 (207)
Q Consensus 93 ~l~~N~l~~~~p~~~~~~~l~~~~~~~n 120 (207)
++++|.++ .+.....+..+..+++++|
T Consensus 146 ~l~~N~i~-~~~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 146 NLSGNLIS-DISGLESLKSLKLLDLSYN 172 (414)
T ss_pred eeccCcch-hccCCccchhhhcccCCcc
Confidence 99999998 4444333444455555554
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=2.3e-05 Score=59.04 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=59.5
Q ss_pred cEEEccCCCCCCCCchhcc-CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCC
Q 046642 18 TAIILSNNSFVGEIPTSIA-NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSD 96 (207)
Q Consensus 18 ~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~ 96 (207)
+.++|.+.++. .+.. ++ .+.+...+||+.|.+. .+ +.|..++.|..|.+++|.|+...|..-.-+++|..|.+.+
T Consensus 22 ~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 44566666554 2111 22 2345667777777775 22 3566777777777777777765555545556677777777
Q ss_pred CcCcC--CCCCCCCCCCCCcccccCCC
Q 046642 97 NLLTG--PIPRGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 97 N~l~~--~~p~~~~~~~l~~~~~~~n~ 121 (207)
|.+.. .+.....++.+..+.+-|||
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCc
Confidence 76652 23333445566666666765
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=3.1e-06 Score=70.19 Aligned_cols=115 Identities=25% Similarity=0.229 Sum_probs=66.3
Q ss_pred hhhhhcccccEEEccCCCCCC--CCchhccCCCCCCEEECcCCcCCCCCcc-cCCCCCCCCEEecCCCCCCCCCc-hhhh
Q 046642 9 EYEKLSNLITAIILSNNSFVG--EIPTSIANLKGLRNLDLSNNNLQGRIPL-SLSNLTAIESMDLSSNMLSGNIP-QQLS 84 (207)
Q Consensus 9 ~~~~~l~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~~p-~~~~ 84 (207)
.....+++++.|||++|-+.. .+-.....|++|+.|+|+.|++.-.... .-..+++|+.|.++.+.++...- ....
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 355678888888888888763 2223345788888888888887622211 12345677777777777763221 1234
Q ss_pred cCCccceecCCCCc-CcCCCCCCCCCCCCCcccccCCCCC
Q 046642 85 ELTSLEFFDVSDNL-LTGPIPRGKQFDTFGKSSFDGNPGL 123 (207)
Q Consensus 85 ~l~~L~~l~l~~N~-l~~~~p~~~~~~~l~~~~~~~n~~~ 123 (207)
.+++|..|++..|. +.-.--....+..+..+++++|+.+
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 45666666666663 2111111223344555555555543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.70 E-value=1.1e-06 Score=77.11 Aligned_cols=101 Identities=25% Similarity=0.349 Sum_probs=78.0
Q ss_pred ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642 15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV 94 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l 94 (207)
..|...+.++|.+. .+..++.-++.|+.|||++|+++ .. +.+..++.|++|||+.|.+. .+|..-..-..|..|++
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 44666788899998 77888888999999999999998 33 37889999999999999998 67754333345999999
Q ss_pred CCCcCcCCCCCCCCCCCCCcccccCC
Q 046642 95 SDNLLTGPIPRGKQFDTFGKSSFDGN 120 (207)
Q Consensus 95 ~~N~l~~~~p~~~~~~~l~~~~~~~n 120 (207)
++|.++ .+-...++..+..++++.|
T Consensus 240 rnN~l~-tL~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 240 RNNALT-TLRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred cccHHH-hhhhHHhhhhhhccchhHh
Confidence 999888 3333345666666776665
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=4.5e-05 Score=57.44 Aligned_cols=85 Identities=21% Similarity=0.276 Sum_probs=67.8
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCch--hhhcCCccc
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ--QLSELTSLE 90 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~--~~~~l~~L~ 90 (207)
.+.+...+||++|.+- .-+.|..++.|.+|.|.+|+|+..-|.--.-+++|..|.+.+|.|. .+.+ -+..+++|+
T Consensus 40 ~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLE 116 (233)
T ss_pred cccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccc
Confidence 4557788999999985 3345788999999999999999666655556778999999999986 3322 366788999
Q ss_pred eecCCCCcCc
Q 046642 91 FFDVSDNLLT 100 (207)
Q Consensus 91 ~l~l~~N~l~ 100 (207)
+|.+-+|+.+
T Consensus 117 ~Ltll~Npv~ 126 (233)
T KOG1644|consen 117 YLTLLGNPVE 126 (233)
T ss_pred eeeecCCchh
Confidence 9999999876
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=1.7e-05 Score=65.98 Aligned_cols=87 Identities=26% Similarity=0.374 Sum_probs=45.3
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc--ccCCCCCCCCEEecCCCCCCCC-Cchh-----hh
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP--LSLSNLTAIESMDLSSNMLSGN-IPQQ-----LS 84 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l~~~-~p~~-----~~ 84 (207)
..++|..|+|.+|..-.........+..|+.|||++|.+- ..+ ...+.++.|..|+++.+.+... .|+. ..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 3455566666666322222233334556666666666654 233 3345566666666666665421 2221 23
Q ss_pred cCCccceecCCCCcCc
Q 046642 85 ELTSLEFFDVSDNLLT 100 (207)
Q Consensus 85 ~l~~L~~l~l~~N~l~ 100 (207)
.+++|++|++..|++.
T Consensus 299 ~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIR 314 (505)
T ss_pred ccccceeeecccCccc
Confidence 4566666777666664
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.00017 Score=57.61 Aligned_cols=97 Identities=24% Similarity=0.273 Sum_probs=68.7
Q ss_pred ccchhhhhhhcccccEEEccCCCCCC--CCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCc-
Q 046642 4 KGTELEYEKLSNLITAIILSNNSFVG--EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP- 80 (207)
Q Consensus 4 ~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p- 80 (207)
.|-...+.+..+.++.|||.+|.|+. .+-.-+.+||.|+.|+|+.|.+...+-.---.+.+|+.|-|.+..+...-.
T Consensus 60 ~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~ 139 (418)
T KOG2982|consen 60 EGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST 139 (418)
T ss_pred chhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh
Confidence 34445667777888999999999983 333345689999999999999975443222356688888888877754322
Q ss_pred hhhhcCCccceecCCCCcCc
Q 046642 81 QQLSELTSLEFFDVSDNLLT 100 (207)
Q Consensus 81 ~~~~~l~~L~~l~l~~N~l~ 100 (207)
..+..++.++.|.++.|.+.
T Consensus 140 s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred hhhhcchhhhhhhhccchhh
Confidence 34566788888888888544
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.00048 Score=53.78 Aligned_cols=63 Identities=25% Similarity=0.431 Sum_probs=31.0
Q ss_pred cCCCCCCEEECcCC--cCCCCCcccCCCCCCCCEEecCCCCCCCCCchh---hhcCCccceecCCCCcCc
Q 046642 36 ANLKGLRNLDLSNN--NLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQ---LSELTSLEFFDVSDNLLT 100 (207)
Q Consensus 36 ~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---~~~l~~L~~l~l~~N~l~ 100 (207)
..|++|+.|.++.| ++.+.++.....+++|+++++++|++. . ++. +..+.+|..|++.+|..+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcchhhhhcccCCcc
Confidence 34555556666655 444444444444455666666666554 1 121 233444555555555444
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.00071 Score=52.83 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=61.8
Q ss_pred CchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCC--CCCCCCchhhhcCCccceecCCCCcCcC--CCCCC
Q 046642 31 IPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSN--MLSGNIPQQLSELTSLEFFDVSDNLLTG--PIPRG 106 (207)
Q Consensus 31 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N--~l~~~~p~~~~~l~~L~~l~l~~N~l~~--~~p~~ 106 (207)
+..-...+..|+.|.+.+..++ .+ ..+..|++|+.|.+|.| .+.+.++.....+++|+++++++|++.- .++..
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 4445556677888888888876 22 35778899999999999 7776676667777999999999999872 33333
Q ss_pred CCCCCCCcccccC
Q 046642 107 KQFDTFGKSSFDG 119 (207)
Q Consensus 107 ~~~~~l~~~~~~~ 119 (207)
..+..+..+++..
T Consensus 113 ~~l~nL~~Ldl~n 125 (260)
T KOG2739|consen 113 KELENLKSLDLFN 125 (260)
T ss_pred hhhcchhhhhccc
Confidence 3444454555443
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.71 E-value=0.0012 Score=59.37 Aligned_cols=90 Identities=18% Similarity=0.313 Sum_probs=54.1
Q ss_pred hhhhhhcccccEEEccCCCCCC-CCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCC-CCchhhhc
Q 046642 8 LEYEKLSNLITAIILSNNSFVG-EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSG-NIPQQLSE 85 (207)
Q Consensus 8 ~~~~~~l~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~ 85 (207)
..+...+++|+.|.+++-.+.. ..-....++++|..||+|+.+++ .+ ..++.|++|+.|.+.+=.+.. ..-..+.+
T Consensus 141 ~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 141 KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence 4566778888888887766542 22334557788888888888876 33 455666666666555544431 11123445
Q ss_pred CCccceecCCCCcC
Q 046642 86 LTSLEFFDVSDNLL 99 (207)
Q Consensus 86 l~~L~~l~l~~N~l 99 (207)
|++|+.||+|....
T Consensus 219 L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 219 LKKLRVLDISRDKN 232 (699)
T ss_pred ccCCCeeecccccc
Confidence 66666666665443
No 53
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.71 E-value=0.00054 Score=32.71 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=10.2
Q ss_pred ccEEEccCCCCCCCCchhcc
Q 046642 17 ITAIILSNNSFVGEIPTSIA 36 (207)
Q Consensus 17 L~~L~Ls~n~i~~~~p~~~~ 36 (207)
|++||+++|+|+ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.59 E-value=0.0016 Score=58.58 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=29.0
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCC-CCcccCCCCCCCCEEecCCCCCC
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG-RIPLSLSNLTAIESMDLSSNMLS 76 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~ 76 (207)
+++|..||+|+.+++.. ..++.|++|+.|.+.+=.+.. ..-..+.+|++|++||+|.....
T Consensus 172 FpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 172 FPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred cCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 34555555555555522 344555555555554444431 11123345555555555554443
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.42 E-value=0.001 Score=54.12 Aligned_cols=112 Identities=19% Similarity=0.242 Sum_probs=70.1
Q ss_pred hhhcccccEEEccCCCCCCC----CchhccCCCCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCCCCCCchh
Q 046642 11 EKLSNLITAIILSNNSFVGE----IPTSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNMLSGNIPQQ 82 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 82 (207)
+...+.|+.+.++.|.|... +-..|...++|+.|||..|-++.. +...++.+++|+.|+++++.+...--..
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 34457788888888887521 223466778888888888887632 2345666778888888888876432222
Q ss_pred h-----hcCCccceecCCCCcCcCCC-----CCCCCCCCCCcccccCCCC
Q 046642 83 L-----SELTSLEFFDVSDNLLTGPI-----PRGKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 83 ~-----~~l~~L~~l~l~~N~l~~~~-----p~~~~~~~l~~~~~~~n~~ 122 (207)
+ ...++|..+.+.+|.++..- -.....+.+..+.+++|..
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 23577888888888776310 0001234566667777754
No 56
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.40 E-value=0.00099 Score=31.78 Aligned_cols=19 Identities=63% Similarity=0.800 Sum_probs=9.8
Q ss_pred CCEEECcCCcCCCCCcccCC
Q 046642 41 LRNLDLSNNNLQGRIPLSLS 60 (207)
Q Consensus 41 L~~L~Ls~n~l~~~~p~~~~ 60 (207)
|++||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.0004 Score=55.03 Aligned_cols=84 Identities=24% Similarity=0.321 Sum_probs=50.4
Q ss_pred hhhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc--ccCCCCCCCCEEecCCCCCCCCCchh--
Q 046642 7 ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP--LSLSNLTAIESMDLSSNMLSGNIPQQ-- 82 (207)
Q Consensus 7 ~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l~~~~p~~-- 82 (207)
++.+-..++.|++|.||-|.|+..-| +..++.|+.|+|..|.|. .+. ..+.++++|+.|.|..|...|.-+..
T Consensus 33 DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 33 DISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred HHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence 34444556667777777777764333 456667777777777765 222 23566777777777777766554432
Q ss_pred ---hhcCCccceec
Q 046642 83 ---LSELTSLEFFD 93 (207)
Q Consensus 83 ---~~~l~~L~~l~ 93 (207)
+.-+++|+.||
T Consensus 110 ~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHcccchhcc
Confidence 33455665554
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.32 E-value=0.0096 Score=50.19 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=27.5
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCC
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSN 73 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N 73 (207)
+++++.|++++|.++ .+|. + ..+|+.|.++++.--..+|..+. .+|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 466777777777766 4452 1 23466666655322124443331 34555555544
No 59
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.70 E-value=0.00015 Score=55.95 Aligned_cols=83 Identities=19% Similarity=0.198 Sum_probs=54.7
Q ss_pred ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642 15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV 94 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l 94 (207)
...+.||++.|.+- -.-..|+.++.|..||++.|.+. ..|..++.+..+..+++..|.++ ..|.+++..+.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 34556677766655 44455566666677777777766 66666666666677777777766 66666777777777777
Q ss_pred CCCcCc
Q 046642 95 SDNLLT 100 (207)
Q Consensus 95 ~~N~l~ 100 (207)
-.|.|.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 666554
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.25 E-value=0.014 Score=47.72 Aligned_cols=88 Identities=19% Similarity=0.281 Sum_probs=56.5
Q ss_pred hcccccEEEccCCCCCCC----CchhccCCCCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCCCCCC----c
Q 046642 13 LSNLITAIILSNNSFVGE----IPTSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNMLSGNI----P 80 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~----p 80 (207)
..+.|++++...|.+... +...|...+.|+.+.++.|.|... +-..+..+++|+.|||.+|.++..- .
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 355677888888777532 222355667788888888877511 1234566778888888888776322 2
Q ss_pred hhhhcCCccceecCCCCcCc
Q 046642 81 QQLSELTSLEFFDVSDNLLT 100 (207)
Q Consensus 81 ~~~~~l~~L~~l~l~~N~l~ 100 (207)
..+..++.|+.++++++.+.
T Consensus 235 kaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHhcccchheeecccccccc
Confidence 24556677788888877665
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.09 E-value=0.053 Score=45.84 Aligned_cols=70 Identities=24% Similarity=0.500 Sum_probs=46.1
Q ss_pred hhhcccccEEEccC-CCCCCCCchhccCCCCCCEEECcCC-cCCCCCcccCCCCCCCCEEecCCCCCC--CCCchhhhcC
Q 046642 11 EKLSNLITAIILSN-NSFVGEIPTSIANLKGLRNLDLSNN-NLQGRIPLSLSNLTAIESMDLSSNMLS--GNIPQQLSEL 86 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~-n~i~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~ls~N~l~--~~~p~~~~~l 86 (207)
+.++.+|+.|.+++ +.++ .+|+.+ .++|+.|++++| .+. .+|. +|+.|+++.|.+. +.+|.
T Consensus 68 P~LP~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPs----- 132 (426)
T PRK15386 68 PVLPNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPN----- 132 (426)
T ss_pred CCCCCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcc-----
Confidence 36788899999987 4554 667655 358999999998 554 5554 4677777776643 13443
Q ss_pred CccceecCCC
Q 046642 87 TSLEFFDVSD 96 (207)
Q Consensus 87 ~~L~~l~l~~ 96 (207)
+|+.|.+.+
T Consensus 133 -sLk~L~I~~ 141 (426)
T PRK15386 133 -GLTSLSINS 141 (426)
T ss_pred -hHhheeccc
Confidence 355565543
No 62
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.90 E-value=0.015 Score=25.73 Aligned_cols=11 Identities=45% Similarity=0.770 Sum_probs=3.2
Q ss_pred CCEEecCCCCC
Q 046642 65 IESMDLSSNML 75 (207)
Q Consensus 65 L~~L~ls~N~l 75 (207)
|+.|++++|.+
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33344444433
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.0034 Score=49.94 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=67.4
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCch--hhhcCCccce
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ--QLSELTSLEF 91 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~--~~~~l~~L~~ 91 (207)
+.+.+.|+.-++.|+.+ .....|+.|+.|.||-|+|+..- .+..+++|++|+|..|.|. .+-+ -+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 55677888889888732 23467999999999999998443 4778899999999999998 4433 3678999999
Q ss_pred ecCCCCcCcCCC
Q 046642 92 FDVSDNLLTGPI 103 (207)
Q Consensus 92 l~l~~N~l~~~~ 103 (207)
|-|..|+-.|.-
T Consensus 93 LWL~ENPCc~~a 104 (388)
T KOG2123|consen 93 LWLDENPCCGEA 104 (388)
T ss_pred HhhccCCccccc
Confidence 999999876643
No 64
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.02 E-value=0.0014 Score=50.75 Aligned_cols=87 Identities=23% Similarity=0.197 Sum_probs=69.4
Q ss_pred hhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCCCCCCCCC
Q 046642 33 TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTF 112 (207)
Q Consensus 33 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l 112 (207)
.++..+..-+.||++.|++. .+-..|+.++.|..|+++.|.+. ..|..++....+..+++..|..+...-...+.+..
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 34667788999999999987 66778888999999999999999 88999999999999999999888433333455555
Q ss_pred CcccccCCC
Q 046642 113 GKSSFDGNP 121 (207)
Q Consensus 113 ~~~~~~~n~ 121 (207)
...+..+|+
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 556666665
No 65
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.49 E-value=0.074 Score=26.09 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=6.5
Q ss_pred cccEEEccCCCCC
Q 046642 16 LITAIILSNNSFV 28 (207)
Q Consensus 16 ~L~~L~Ls~n~i~ 28 (207)
+|+.|+|++|.|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4445555555554
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.49 E-value=0.074 Score=26.09 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=6.5
Q ss_pred cccEEEccCCCCC
Q 046642 16 LITAIILSNNSFV 28 (207)
Q Consensus 16 ~L~~L~Ls~n~i~ 28 (207)
+|+.|+|++|.|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4445555555554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.00 E-value=0.15 Score=35.27 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=46.6
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
.-..+|+.+.+.. .++..-...|.++++|+.+.+..+ +...-...|....+|+.+.+.+ .+.......|..+.+|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 4456777787764 455455666777878888888775 5534445677777888888865 443233445666788888
Q ss_pred ecCCCC
Q 046642 92 FDVSDN 97 (207)
Q Consensus 92 l~l~~N 97 (207)
+++..+
T Consensus 86 i~~~~~ 91 (129)
T PF13306_consen 86 IDIPSN 91 (129)
T ss_dssp EEETTT
T ss_pred cccCcc
Confidence 887654
No 68
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=92.99 E-value=0.13 Score=28.29 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHhhcc
Q 046642 163 SGTIIGVILGHIFSTR 178 (207)
Q Consensus 163 ~~~~~~~~~~~~~~~~ 178 (207)
+++++++++++++++|
T Consensus 21 V~vI~~vl~~~l~~~~ 36 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWY 36 (40)
T ss_pred hHHHHHHHHHHhheEE
Confidence 3333333333333333
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.96 E-value=0.11 Score=25.46 Aligned_cols=14 Identities=43% Similarity=0.638 Sum_probs=6.8
Q ss_pred CCCCEEecCCCCCC
Q 046642 63 TAIESMDLSSNMLS 76 (207)
Q Consensus 63 ~~L~~L~ls~N~l~ 76 (207)
++|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555544
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.96 E-value=0.11 Score=25.46 Aligned_cols=14 Identities=43% Similarity=0.638 Sum_probs=6.8
Q ss_pred CCCCEEecCCCCCC
Q 046642 63 TAIESMDLSSNMLS 76 (207)
Q Consensus 63 ~~L~~L~ls~N~l~ 76 (207)
++|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555544
No 71
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=0.092 Score=42.45 Aligned_cols=64 Identities=30% Similarity=0.327 Sum_probs=48.0
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc-ccCCCCCCCCEEecCCCCC
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP-LSLSNLTAIESMDLSSNML 75 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~ls~N~l 75 (207)
+.++.|+.|+++.|.+...+...-..+.+|+.|-|.+..+.+... ..+..++.++.|++|.|.+
T Consensus 94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 456788999999999984432221356789999999998876544 4457788999999999844
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.38 E-value=0.16 Score=35.16 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=50.3
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
+...++|+.+.+.++ +...-...|.+.+.|+.+.+.. .+.......|...++|+.+++..+ +.......|.+. .|+
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~ 106 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK 106 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence 456677999999886 6655566788888899999976 444344567788999999999876 553334456665 788
Q ss_pred eecCCC
Q 046642 91 FFDVSD 96 (207)
Q Consensus 91 ~l~l~~ 96 (207)
.+.+..
T Consensus 107 ~i~~~~ 112 (129)
T PF13306_consen 107 EINIPS 112 (129)
T ss_dssp EEE-TT
T ss_pred EEEECC
Confidence 877765
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.10 E-value=0.073 Score=42.49 Aligned_cols=89 Identities=24% Similarity=0.347 Sum_probs=57.7
Q ss_pred hhcccccEEEccCCCCCCCCch----hccCCCCCCEEECcCCcCC---CCCc-------ccCCCCCCCCEEecCCCCCCC
Q 046642 12 KLSNLITAIILSNNSFVGEIPT----SIANLKGLRNLDLSNNNLQ---GRIP-------LSLSNLTAIESMDLSSNMLSG 77 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~----~~~~l~~L~~L~Ls~n~l~---~~~p-------~~~~~l~~L~~L~ls~N~l~~ 77 (207)
..+..++.++||+|.|...-.. .+.+-.+|+..+++.-... ..++ ..+-.+++|+..+||.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3577889999999998744333 3445566777776653322 1122 234567888888888888876
Q ss_pred CCchh----hhcCCccceecCCCCcCc
Q 046642 78 NIPQQ----LSELTSLEFFDVSDNLLT 100 (207)
Q Consensus 78 ~~p~~----~~~l~~L~~l~l~~N~l~ 100 (207)
..|.. +..-+.|.+|.+++|.+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 66654 344567888888888654
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.80 E-value=0.51 Score=37.86 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=53.0
Q ss_pred cccccEEEccCCCCCCCCchhc----cCCCCCCEEECcCCcCCCCCcc-------------cCCCCCCCCEEecCCCCCC
Q 046642 14 SNLITAIILSNNSFVGEIPTSI----ANLKGLRNLDLSNNNLQGRIPL-------------SLSNLTAIESMDLSSNMLS 76 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~----~~l~~L~~L~Ls~n~l~~~~p~-------------~~~~l~~L~~L~ls~N~l~ 76 (207)
++.|+..+||.|.|....|..+ ..-+.|..|.|++|.+...--. ...+-+.|+......|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 4678899999999987777654 4557899999999987521111 1234567788888888775
Q ss_pred CCCch-----hhhcCCccceecCCCCcC
Q 046642 77 GNIPQ-----QLSELTSLEFFDVSDNLL 99 (207)
Q Consensus 77 ~~~p~-----~~~~l~~L~~l~l~~N~l 99 (207)
..|. .+..-..|+.+.+..|.+
T Consensus 171 -ngs~~~~a~~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 171 -NGSKELSAALLESHENLKEVKIQQNGI 197 (388)
T ss_pred -cCcHHHHHHHHHhhcCceeEEeeecCc
Confidence 2222 122223455555555544
No 75
>PF15102 TMEM154: TMEM154 protein family
Probab=90.71 E-value=0.16 Score=36.39 Aligned_cols=31 Identities=6% Similarity=-0.094 Sum_probs=12.5
Q ss_pred eeeeehhhhHHHHHHHHHHHhhcchhhHHHHH
Q 046642 155 KTVVIGYASGTIIGVILGHIFSTRKYEWLAKT 186 (207)
Q Consensus 155 ~~~~i~~~~~~~~~~~~~~~~~~~~~~w~~~~ 186 (207)
+.++|..++.+++++++ ++++.+.|||+.|.
T Consensus 59 LmIlIP~VLLvlLLl~v-V~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSV-VCLVIYYKRKRTKQ 89 (146)
T ss_pred EEEeHHHHHHHHHHHHH-HHheeEEeecccCC
Confidence 34444433333333333 33333445555543
No 76
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=90.57 E-value=0.33 Score=35.01 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=9.6
Q ss_pred ceeeeehhhhHHHHHHHHHH
Q 046642 154 WKTVVIGYASGTIIGVILGH 173 (207)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~~~ 173 (207)
...+++|+++++++++++++
T Consensus 51 VIGvVVGVGg~ill~il~lv 70 (154)
T PF04478_consen 51 VIGVVVGVGGPILLGILALV 70 (154)
T ss_pred EEEEEecccHHHHHHHHHhh
Confidence 34556665554444433333
No 77
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=89.47 E-value=0.28 Score=34.62 Aligned_cols=10 Identities=20% Similarity=0.447 Sum_probs=3.6
Q ss_pred HHHHHHHHHh
Q 046642 166 IIGVILGHIF 175 (207)
Q Consensus 166 ~~~~~~~~~~ 175 (207)
++++++++++
T Consensus 9 i~~i~l~~~~ 18 (130)
T PF12273_consen 9 IVAILLFLFL 18 (130)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 78
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=88.67 E-value=0.25 Score=34.45 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=6.8
Q ss_pred ehhhhHHHHHHHHHHH
Q 046642 159 IGYASGTIIGVILGHI 174 (207)
Q Consensus 159 i~~~~~~~~~~~~~~~ 174 (207)
+++++|++++++.+++
T Consensus 67 ~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHH
Confidence 4444444444443333
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.85 E-value=0.38 Score=23.81 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=6.3
Q ss_pred cccEEEccCCCCC
Q 046642 16 LITAIILSNNSFV 28 (207)
Q Consensus 16 ~L~~L~Ls~n~i~ 28 (207)
+|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444555555544
No 80
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=87.46 E-value=0.22 Score=34.70 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=14.3
Q ss_pred ceeeeehhhhHHHHHHHHHHHhh
Q 046642 154 WKTVVIGYASGTIIGVILGHIFS 176 (207)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~~~~~~ 176 (207)
..++++|+++|+++.++++.+++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHH
Confidence 45677888877766555444444
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.77 E-value=0.57 Score=23.18 Aligned_cols=13 Identities=23% Similarity=0.227 Sum_probs=6.3
Q ss_pred cccEEEccCCCCC
Q 046642 16 LITAIILSNNSFV 28 (207)
Q Consensus 16 ~L~~L~Ls~n~i~ 28 (207)
+|+.|+|+.|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444555555443
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.82 E-value=0.098 Score=25.12 Aligned_cols=12 Identities=42% Similarity=0.772 Sum_probs=4.0
Q ss_pred CCCEEecCCCCC
Q 046642 64 AIESMDLSSNML 75 (207)
Q Consensus 64 ~L~~L~ls~N~l 75 (207)
+|+.|++++|.|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 334444444433
No 83
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.41 E-value=0.056 Score=43.65 Aligned_cols=85 Identities=20% Similarity=0.233 Sum_probs=47.4
Q ss_pred cccEEEccCCCCCC-CCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCC-CCCC-CchhhhcCCcccee
Q 046642 16 LITAIILSNNSFVG-EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM-LSGN-IPQQLSELTSLEFF 92 (207)
Q Consensus 16 ~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~-l~~~-~p~~~~~l~~L~~l 92 (207)
.++.||||+..|+. .+-.-+..+.+|+.|.|.++++...+-..+..=.+|+.|+++... ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46677777777662 222334455667777777777765555555555666666666542 2210 01124556666666
Q ss_pred cCCCCcCc
Q 046642 93 DVSDNLLT 100 (207)
Q Consensus 93 ~l~~N~l~ 100 (207)
+++.+.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 66666544
No 84
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=83.56 E-value=1.8 Score=33.08 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=2.6
Q ss_pred eehhhhH
Q 046642 158 VIGYASG 164 (207)
Q Consensus 158 ~i~~~~~ 164 (207)
++|+++|
T Consensus 40 ~iaiVAG 46 (221)
T PF08374_consen 40 MIAIVAG 46 (221)
T ss_pred eeeeecc
Confidence 3333333
No 85
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=83.08 E-value=1.9 Score=32.09 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=10.0
Q ss_pred eeeeehhhhHHHHHHHHHHHhh
Q 046642 155 KTVVIGYASGTIIGVILGHIFS 176 (207)
Q Consensus 155 ~~~~i~~~~~~~~~~~~~~~~~ 176 (207)
..++++++++++++++++++++
T Consensus 78 ~~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 78 TGIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred eeeeeehhhHHHHHHHhHhhhe
Confidence 3455555554444444333333
No 86
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=81.64 E-value=0.81 Score=37.09 Aligned_cols=6 Identities=0% Similarity=-0.120 Sum_probs=2.2
Q ss_pred hhcchh
Q 046642 175 FSTRKY 180 (207)
Q Consensus 175 ~~~~~~ 180 (207)
+++|||
T Consensus 278 ILRYRR 283 (299)
T PF02009_consen 278 ILRYRR 283 (299)
T ss_pred HHHHHH
Confidence 333333
No 87
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=81.38 E-value=0.76 Score=33.17 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=17.6
Q ss_pred eeeeehhhhHHHHHHHHHHHhhcc
Q 046642 155 KTVVIGYASGTIIGVILGHIFSTR 178 (207)
Q Consensus 155 ~~~~i~~~~~~~~~~~~~~~~~~~ 178 (207)
..++||+++|+.+.++++++++.|
T Consensus 48 knIVIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhhe
Confidence 468899999987777766555543
No 88
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=81.19 E-value=1 Score=36.67 Aligned_cols=87 Identities=22% Similarity=0.262 Sum_probs=55.7
Q ss_pred hhhhhcccccEEEccCCCCC---CCCchhccCCCCCCEEECcCCcC-CCCCcccCCCCCCCCEEecCCCCCCCCCchh--
Q 046642 9 EYEKLSNLITAIILSNNSFV---GEIPTSIANLKGLRNLDLSNNNL-QGRIPLSLSNLTAIESMDLSSNMLSGNIPQQ-- 82 (207)
Q Consensus 9 ~~~~~l~~L~~L~Ls~n~i~---~~~p~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-- 82 (207)
.+..+-.+|+.|+|++..=. .-+.---...++|..||||.|.. +...-..|.+++.|++|.++.+.. .+|..
T Consensus 280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~ 357 (419)
T KOG2120|consen 280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLL 357 (419)
T ss_pred HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHee
Confidence 34556677888888874311 11111123578888999988763 333334567788888888887753 45554
Q ss_pred -hhcCCccceecCCCC
Q 046642 83 -LSELTSLEFFDVSDN 97 (207)
Q Consensus 83 -~~~l~~L~~l~l~~N 97 (207)
+...++|.+||+.+.
T Consensus 358 ~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 358 ELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeccCcceEEEEeccc
Confidence 456678888887654
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.01 E-value=1.5 Score=21.91 Aligned_cols=12 Identities=75% Similarity=1.035 Sum_probs=5.6
Q ss_pred CCCEEECcCCcC
Q 046642 40 GLRNLDLSNNNL 51 (207)
Q Consensus 40 ~L~~L~Ls~n~l 51 (207)
+|+.|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344444444444
No 90
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=80.44 E-value=2.9 Score=33.42 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=7.9
Q ss_pred eeeehhhhHHHHHHHH
Q 046642 156 TVVIGYASGTIIGVIL 171 (207)
Q Consensus 156 ~~~i~~~~~~~~~~~~ 171 (207)
.+++|+++|+++++++
T Consensus 214 ~iv~g~~~G~~~L~ll 229 (278)
T PF06697_consen 214 KIVVGVVGGVVLLGLL 229 (278)
T ss_pred EEEEEehHHHHHHHHH
Confidence 3455545555444444
No 91
>PF15050 SCIMP: SCIMP protein
Probab=80.33 E-value=1.1 Score=30.80 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhcchhhHHHHHhccC
Q 046642 166 IIGVILGHIFSTRKYEWLAKTFHLQ 190 (207)
Q Consensus 166 ~~~~~~~~~~~~~~~~w~~~~~~~~ 190 (207)
++.++++++++|. .||..|..+.|
T Consensus 18 ~vS~~lglIlyCv-cR~~lRqGkkw 41 (133)
T PF15050_consen 18 LVSVVLGLILYCV-CRWQLRQGKKW 41 (133)
T ss_pred HHHHHHHHHHHHH-HHHHHHccccc
Confidence 3333444433332 33455544444
No 92
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=80.13 E-value=0.53 Score=28.66 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=0.0
Q ss_pred eeehhhhHHHHHHHHH
Q 046642 157 VVIGYASGTIIGVILG 172 (207)
Q Consensus 157 ~~i~~~~~~~~~~~~~ 172 (207)
++.|+++|+++.++++
T Consensus 14 vIaG~Vvgll~ailLI 29 (64)
T PF01034_consen 14 VIAGGVVGLLFAILLI 29 (64)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444333333
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=77.30 E-value=1.8 Score=44.69 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=15.4
Q ss_pred cCCCCCCCCCchhhhcCCccceecCCCCcCcC
Q 046642 70 LSSNMLSGNIPQQLSELTSLEFFDVSDNLLTG 101 (207)
Q Consensus 70 ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 101 (207)
|++|+|+...+..|..+.+|+.|+|++|++.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 44555553333344445555555555554443
No 94
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=77.01 E-value=1.5 Score=27.74 Aligned_cols=7 Identities=0% Similarity=-0.273 Sum_probs=2.4
Q ss_pred hhcchhh
Q 046642 175 FSTRKYE 181 (207)
Q Consensus 175 ~~~~~~~ 181 (207)
++++|++
T Consensus 21 ~~~~rr~ 27 (75)
T PF14575_consen 21 IVCFRRC 27 (75)
T ss_dssp HCCCTT-
T ss_pred EEEEeeE
Confidence 3334433
No 95
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=75.79 E-value=1.6 Score=29.15 Aligned_cols=8 Identities=25% Similarity=0.248 Sum_probs=3.3
Q ss_pred HHHHHhhc
Q 046642 170 ILGHIFST 177 (207)
Q Consensus 170 ~~~~~~~~ 177 (207)
++.+++++
T Consensus 85 ~l~w~f~~ 92 (96)
T PTZ00382 85 FLCWWFVC 92 (96)
T ss_pred HHhheeEE
Confidence 34444433
No 96
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=74.48 E-value=0.82 Score=31.77 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred hhcchhhHHHHHh
Q 046642 175 FSTRKYEWLAKTF 187 (207)
Q Consensus 175 ~~~~~~~w~~~~~ 187 (207)
++.|||.++.+++
T Consensus 98 ~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 98 FLVWRRCRRREKF 110 (129)
T ss_dssp -------------
T ss_pred HHHHhhhhccccC
Confidence 3334443333333
No 97
>PTZ00046 rifin; Provisional
Probab=73.93 E-value=2.4 Score=35.11 Aligned_cols=16 Identities=6% Similarity=-0.041 Sum_probs=7.1
Q ss_pred HHHHHhhcchhhHHHH
Q 046642 170 ILGHIFSTRKYEWLAK 185 (207)
Q Consensus 170 ~~~~~~~~~~~~w~~~ 185 (207)
+++.+++||||+..++
T Consensus 332 vIIYLILRYRRKKKMk 347 (358)
T PTZ00046 332 VIIYLILRYRRKKKMK 347 (358)
T ss_pred HHHHHHHHhhhcchhH
Confidence 3334444555544433
No 98
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=72.92 E-value=1.1 Score=36.05 Aligned_cols=29 Identities=7% Similarity=-0.127 Sum_probs=0.0
Q ss_pred eehhhhHHHHHHHHHHHhhcchhhHHHHH
Q 046642 158 VIGYASGTIIGVILGHIFSTRKYEWLAKT 186 (207)
Q Consensus 158 ~i~~~~~~~~~~~~~~~~~~~~~~w~~~~ 186 (207)
+++++++++++++.++++++||+++.-|+
T Consensus 150 IpaVVI~~iLLIA~iIa~icyrrkR~GK~ 178 (290)
T PF05454_consen 150 IPAVVIAAILLIAGIIACICYRRKRKGKM 178 (290)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 34444444444444444455554433333
No 99
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=72.68 E-value=2.7 Score=34.71 Aligned_cols=16 Identities=6% Similarity=-0.041 Sum_probs=6.9
Q ss_pred HHHHHhhcchhhHHHH
Q 046642 170 ILGHIFSTRKYEWLAK 185 (207)
Q Consensus 170 ~~~~~~~~~~~~w~~~ 185 (207)
+++.+++||||+..++
T Consensus 327 vIIYLILRYRRKKKMk 342 (353)
T TIGR01477 327 VIIYLILRYRRKKKMK 342 (353)
T ss_pred HHHHHHHHhhhcchhH
Confidence 3333444555443333
No 100
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=71.38 E-value=8 Score=21.23 Aligned_cols=8 Identities=25% Similarity=0.584 Sum_probs=4.3
Q ss_pred hhHHHHHh
Q 046642 180 YEWLAKTF 187 (207)
Q Consensus 180 ~~w~~~~~ 187 (207)
|+|..|+.
T Consensus 31 RKw~aRkr 38 (43)
T PF08114_consen 31 RKWQARKR 38 (43)
T ss_pred HHHHHHHH
Confidence 55655544
No 101
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=69.72 E-value=11 Score=25.87 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=4.1
Q ss_pred eeeehhhhHH
Q 046642 156 TVVIGYASGT 165 (207)
Q Consensus 156 ~~~i~~~~~~ 165 (207)
.++||..+.+
T Consensus 87 p~VIGGLcaL 96 (126)
T PF03229_consen 87 PLVIGGLCAL 96 (126)
T ss_pred hhhhhHHHHH
Confidence 3444443333
No 102
>PRK11677 hypothetical protein; Provisional
Probab=68.68 E-value=1.3 Score=31.47 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHhhcc
Q 046642 162 ASGTIIGVILGHIFSTR 178 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~ 178 (207)
++++++++++++++.++
T Consensus 7 ~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34555666666666554
No 103
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=67.30 E-value=3.5 Score=27.14 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=14.8
Q ss_pred cceeeeehhhhHHHHHHHHHHHhhcchhhHH
Q 046642 153 GWKTVVIGYASGTIIGVILGHIFSTRKYEWL 183 (207)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~w~ 183 (207)
.|..++.| +|++++++++.++++++.+|+
T Consensus 41 yWpyLA~G--GG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAG--GGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhcc--chhhhHHHHHHHHHHhhhhhh
Confidence 46665555 344444444555555555544
No 104
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.30 E-value=1.5 Score=30.60 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHhhcchh
Q 046642 161 YASGTIIGVILGHIFSTRKY 180 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (207)
.++|+|++++|+.++.+.-.
T Consensus 11 a~igLvvGi~IG~li~Rlt~ 30 (138)
T COG3105 11 ALIGLVVGIIIGALIARLTN 30 (138)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 34556666677777766433
No 105
>PF15069 FAM163: FAM163 family
Probab=66.25 E-value=8 Score=27.65 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=12.6
Q ss_pred eeeehhhhHHHHHHHHHHHhhcch
Q 046642 156 TVVIGYASGTIIGVILGHIFSTRK 179 (207)
Q Consensus 156 ~~~i~~~~~~~~~~~~~~~~~~~~ 179 (207)
+++.|.+++.|++++|+.++.+.|
T Consensus 6 vVItGgILAtVILLcIIaVLCYCR 29 (143)
T PF15069_consen 6 VVITGGILATVILLCIIAVLCYCR 29 (143)
T ss_pred EEEechHHHHHHHHHHHHHHHHHh
Confidence 355555555555555555554443
No 106
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.80 E-value=4.5 Score=35.51 Aligned_cols=61 Identities=26% Similarity=0.230 Sum_probs=32.2
Q ss_pred ccccEEEccCCCCCCCC--chhccCCCCCCEEECcCC--cCCCCCcccCCC--CCCCCEEecCCCCCCC
Q 046642 15 NLITAIILSNNSFVGEI--PTSIANLKGLRNLDLSNN--NLQGRIPLSLSN--LTAIESMDLSSNMLSG 77 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~--p~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~--l~~L~~L~ls~N~l~~ 77 (207)
+.+..+.|++|.+.... ..--...++|..|+|++| .+. .-..+.+ ...|++|-+.+|.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCcccc
Confidence 44566777777765321 111223567777777777 332 1111222 2346677777777653
No 107
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=62.85 E-value=12 Score=28.29 Aligned_cols=20 Identities=5% Similarity=-0.162 Sum_probs=10.6
Q ss_pred HHHHHHhhcchhhHHHHHhc
Q 046642 169 VILGHIFSTRKYEWLAKTFH 188 (207)
Q Consensus 169 ~~~~~~~~~~~~~w~~~~~~ 188 (207)
++++++++.+|..+|..+..
T Consensus 23 ~~vllfIfaKRQI~Rf~lrs 42 (186)
T PF07406_consen 23 VFVLLFIFAKRQIMRFALRS 42 (186)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34444455556666666553
No 108
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=62.59 E-value=2.2 Score=29.14 Aligned_cols=6 Identities=33% Similarity=0.202 Sum_probs=1.2
Q ss_pred eehhhh
Q 046642 158 VIGYAS 163 (207)
Q Consensus 158 ~i~~~~ 163 (207)
.||+.+
T Consensus 28 GIGiL~ 33 (118)
T PF14991_consen 28 GIGILI 33 (118)
T ss_dssp SSS---
T ss_pred cceeHH
Confidence 344333
No 109
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.86 E-value=1.6 Score=33.34 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=38.9
Q ss_pred ccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCC-cccC-CCCCCCCEEecCCCC-CCCCCchhhhcCCccceec
Q 046642 17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRI-PLSL-SNLTAIESMDLSSNM-LSGNIPQQLSELTSLEFFD 93 (207)
Q Consensus 17 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~-~~l~~L~~L~ls~N~-l~~~~p~~~~~l~~L~~l~ 93 (207)
++.+|-++..|..+=-+.+.+++.++.|.+.++.--+.. -..+ +-.++|+.|++++|. ||..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 445666666655443444555566666655555421100 0001 124567777777553 4422223455556666665
Q ss_pred CCC
Q 046642 94 VSD 96 (207)
Q Consensus 94 l~~ 96 (207)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
No 110
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=60.71 E-value=6.3 Score=41.10 Aligned_cols=32 Identities=34% Similarity=0.325 Sum_probs=28.2
Q ss_pred EccCCCCCCCCchhccCCCCCCEEECcCCcCC
Q 046642 21 ILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQ 52 (207)
Q Consensus 21 ~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~ 52 (207)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777778899999999999999875
No 111
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=60.65 E-value=11 Score=23.05 Aligned_cols=24 Identities=17% Similarity=0.546 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHhhcchhhHHHHHhc
Q 046642 162 ASGTIIGVILGHIFSTRKYEWLAKTFH 188 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~w~~~~~~ 188 (207)
++++++++++++++.+ +++.++++
T Consensus 4 ilali~G~~~Gff~ar---~~~~k~l~ 27 (64)
T PF03672_consen 4 ILALIVGAVIGFFIAR---KYMEKQLK 27 (64)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4445556666666543 34444443
No 112
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.93 E-value=2.4 Score=29.84 Aligned_cols=15 Identities=27% Similarity=0.786 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHhhc
Q 046642 163 SGTIIGVILGHIFST 177 (207)
Q Consensus 163 ~~~~~~~~~~~~~~~ 177 (207)
+++++++++++++.+
T Consensus 4 i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGR 18 (128)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555543
No 113
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=59.27 E-value=6.8 Score=25.21 Aligned_cols=34 Identities=15% Similarity=0.389 Sum_probs=15.2
Q ss_pred ceeeeehhhhHHHHHHHH-HHHhhcchhhHHHHHh
Q 046642 154 WKTVVIGYASGTIIGVIL-GHIFSTRKYEWLAKTF 187 (207)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~-~~~~~~~~~~w~~~~~ 187 (207)
|-.++++.+++++++.+. ++++.+.|.+|-.++.
T Consensus 16 ~yyiiA~gga~llL~~v~l~vvL~C~r~~~a~kk~ 50 (87)
T PF11980_consen 16 WYYIIAMGGALLLLVAVCLGVVLYCHRFHWAAKKR 50 (87)
T ss_pred eeHHHhhccHHHHHHHHHHHHHHhhhhhccccccC
Confidence 444444444444444444 3444444455544443
No 114
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=58.33 E-value=17 Score=30.48 Aligned_cols=11 Identities=9% Similarity=-0.082 Sum_probs=4.8
Q ss_pred cCccccCcccc
Q 046642 189 LQPKANGRRRR 199 (207)
Q Consensus 189 ~~~~~~~~~~~ 199 (207)
.+|.+...+..
T Consensus 332 ~~p~~~~~~~~ 342 (361)
T PF12259_consen 332 QNPVNVVDGLQ 342 (361)
T ss_pred cCCcccccccc
Confidence 44544444433
No 115
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=57.54 E-value=7 Score=29.41 Aligned_cols=16 Identities=6% Similarity=0.221 Sum_probs=6.5
Q ss_pred eeeehhhhHHHHHHHH
Q 046642 156 TVVIGYASGTIIGVIL 171 (207)
Q Consensus 156 ~~~i~~~~~~~~~~~~ 171 (207)
.++|++-+++++++++
T Consensus 159 ~laI~lPvvv~~~~~~ 174 (189)
T PF14610_consen 159 ALAIALPVVVVVLALI 174 (189)
T ss_pred eEEEEccHHHHHHHHH
Confidence 4444444433333333
No 116
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=56.79 E-value=6.6 Score=27.51 Aligned_cols=12 Identities=17% Similarity=0.601 Sum_probs=6.3
Q ss_pred CCCCCCCC---CCCC
Q 046642 123 LCGGPLSK---KCDN 134 (207)
Q Consensus 123 ~c~~~~~~---~C~~ 134 (207)
.|.|+... .|..
T Consensus 68 ~CrC~~GYtGeRCEh 82 (139)
T PHA03099 68 YCRCSHGYTGIRCQH 82 (139)
T ss_pred eeECCCCcccccccc
Confidence 46665543 4654
No 117
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=56.41 E-value=13 Score=22.97 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=12.3
Q ss_pred eeehhhhHHHHHHHHHHHhhcch
Q 046642 157 VVIGYASGTIIGVILGHIFSTRK 179 (207)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~~~~~ 179 (207)
.+||++.+++++++..+.=++++
T Consensus 34 ~aIGvi~gi~~~~lt~ltN~YFK 56 (68)
T PF04971_consen 34 AAIGVIGGIFFGLLTYLTNLYFK 56 (68)
T ss_pred hhHHHHHHHHHHHHHHHhHhhhh
Confidence 45666666665555444444433
No 118
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=56.09 E-value=1.6 Score=31.26 Aligned_cols=25 Identities=12% Similarity=-0.103 Sum_probs=11.3
Q ss_pred eeehhhhHHHHHHHHHHHhhcchhh
Q 046642 157 VVIGYASGTIIGVILGHIFSTRKYE 181 (207)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~~~~~~~ 181 (207)
+++|+...++++++.+.++|+|+++
T Consensus 12 i~igi~Ll~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 12 ISIGISLLLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHHHHHHHHHHhcceEEEeecc
Confidence 3444444444444444445555543
No 119
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.45 E-value=6.3 Score=34.66 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=15.1
Q ss_pred CCCCEEecCCCCCCCC--CchhhhcCCccceecCCCC
Q 046642 63 TAIESMDLSSNMLSGN--IPQQLSELTSLEFFDVSDN 97 (207)
Q Consensus 63 ~~L~~L~ls~N~l~~~--~p~~~~~l~~L~~l~l~~N 97 (207)
+.+..++|++|++... +...-...++|..|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4444555555554311 0011122345555555555
No 120
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=52.89 E-value=15 Score=29.62 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=10.5
Q ss_pred eehhhhHHHHHHHHHHHhhcchhh
Q 046642 158 VIGYASGTIIGVILGHIFSTRKYE 181 (207)
Q Consensus 158 ~i~~~~~~~~~~~~~~~~~~~~~~ 181 (207)
.+++++|.+++++++.+++.+.+|
T Consensus 233 slAiALG~v~ll~l~Gii~~~~~r 256 (281)
T PF12768_consen 233 SLAIALGTVFLLVLIGIILAYIRR 256 (281)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444443333
No 121
>PRK01844 hypothetical protein; Provisional
Probab=52.19 E-value=13 Score=23.33 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhhcchhhHHHHHhccCc
Q 046642 163 SGTIIGVILGHIFSTRKYEWLAKTFHLQP 191 (207)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 191 (207)
+++++++++++++. |++..++++..|
T Consensus 12 ~~li~G~~~Gff~a---rk~~~k~lk~NP 37 (72)
T PRK01844 12 VALVAGVALGFFIA---RKYMMNYLQKNP 37 (72)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHCC
Confidence 34555555555554 445566664443
No 122
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=52.09 E-value=12 Score=31.83 Aligned_cols=88 Identities=19% Similarity=0.179 Sum_probs=41.9
Q ss_pred hhhcccccEEEccCC-CCCCCCc----hhccCCCCCCEEECcCCc-CCCCCcccCC-CCCCCCEEecCCCC-CCCC-Cch
Q 046642 11 EKLSNLITAIILSNN-SFVGEIP----TSIANLKGLRNLDLSNNN-LQGRIPLSLS-NLTAIESMDLSSNM-LSGN-IPQ 81 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n-~i~~~~p----~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~-~l~~L~~L~ls~N~-l~~~-~p~ 81 (207)
....+.|+.|+++++ ......+ .....+.+|+.|+++... ++...-..+. ..++|+.|.+.++. ++.. +-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345566777777652 1110111 122344666777777666 3311111111 25567777655554 3311 111
Q ss_pred hhhcCCccceecCCCCc
Q 046642 82 QLSELTSLEFFDVSDNL 98 (207)
Q Consensus 82 ~~~~l~~L~~l~l~~N~ 98 (207)
....++.|+.|+++.+.
T Consensus 290 i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhcCcccEEeeecCc
Confidence 23345667777777554
No 123
>PF15050 SCIMP: SCIMP protein
Probab=51.48 E-value=4.5 Score=27.89 Aligned_cols=29 Identities=3% Similarity=0.038 Sum_probs=17.4
Q ss_pred cceeeeehhhhHHHHHHHHHHHhhcchhh
Q 046642 153 GWKTVVIGYASGTIIGVILGHIFSTRKYE 181 (207)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 181 (207)
.|.+++++++++.+++.++++++++|..|
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666665543
No 124
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=50.95 E-value=13 Score=24.11 Aligned_cols=21 Identities=5% Similarity=0.234 Sum_probs=9.5
Q ss_pred eehhhhHHHHHHHHHHHhhcc
Q 046642 158 VIGYASGTIIGVILGHIFSTR 178 (207)
Q Consensus 158 ~i~~~~~~~~~~~~~~~~~~~ 178 (207)
++++++.+.+++++..++..+
T Consensus 19 iv~~~al~~l~~~isGl~l~~ 39 (88)
T PF13703_consen 19 IVGILALLLLLLLISGLYLWW 39 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444443
No 125
>PRK00523 hypothetical protein; Provisional
Probab=50.20 E-value=14 Score=23.19 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhcchhhHHHHHhccCc
Q 046642 165 TIIGVILGHIFSTRKYEWLAKTFHLQP 191 (207)
Q Consensus 165 ~~~~~~~~~~~~~~~~~w~~~~~~~~~ 191 (207)
+++++++++++. |++..++++..|
T Consensus 15 li~G~~~Gffia---rk~~~k~l~~NP 38 (72)
T PRK00523 15 LIVGGIIGYFVS---KKMFKKQIRENP 38 (72)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHCc
Confidence 444444444443 445566664333
No 126
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=50.09 E-value=12 Score=28.64 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=4.9
Q ss_pred hcchhhHHHHH
Q 046642 176 STRKYEWLAKT 186 (207)
Q Consensus 176 ~~~~~~w~~~~ 186 (207)
++.||.|+.+.
T Consensus 124 ~~~Rrs~~~~~ 134 (202)
T PF06365_consen 124 CHQRRSWSKKG 134 (202)
T ss_pred hhhhccCCcch
Confidence 33445554443
No 127
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=49.17 E-value=29 Score=20.04 Aligned_cols=18 Identities=11% Similarity=0.050 Sum_probs=7.2
Q ss_pred hhhhHHHHHHHHHHHhhc
Q 046642 160 GYASGTIIGVILGHIFST 177 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (207)
|++++++++++-+++++.
T Consensus 18 GLi~A~vlfi~Gi~iils 35 (50)
T PF02038_consen 18 GLIFAGVLFILGILIILS 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHc
Confidence 344444444333333333
No 128
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=47.95 E-value=9.4 Score=24.18 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhcchhhH
Q 046642 165 TIIGVILGHIFSTRKYEW 182 (207)
Q Consensus 165 ~~~~~~~~~~~~~~~~~w 182 (207)
++++|+.+.+++.|+.+|
T Consensus 13 f~ifVap~WL~lHY~sk~ 30 (75)
T PF06667_consen 13 FMIFVAPIWLILHYRSKW 30 (75)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334444444455555444
No 129
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=47.80 E-value=6.2 Score=36.16 Aligned_cols=14 Identities=7% Similarity=-0.024 Sum_probs=6.3
Q ss_pred HhhcchhhHHHHHh
Q 046642 174 IFSTRKYEWLAKTF 187 (207)
Q Consensus 174 ~~~~~~~~w~~~~~ 187 (207)
+++|+|++++.+..
T Consensus 294 l~yCrrkc~~~r~~ 307 (807)
T PF10577_consen 294 LCYCRRKCLKPRQR 307 (807)
T ss_pred HHhhhcccCCcccc
Confidence 33444445554433
No 130
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=47.50 E-value=14 Score=25.20 Aligned_cols=17 Identities=6% Similarity=0.038 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHhhcch
Q 046642 163 SGTIIGVILGHIFSTRK 179 (207)
Q Consensus 163 ~~~~~~~~~~~~~~~~~ 179 (207)
+++++++.+++-+..|+
T Consensus 7 l~llLll~l~asl~~wr 23 (107)
T PF15330_consen 7 LALLLLLSLAASLLAWR 23 (107)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33343444444444443
No 131
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=44.62 E-value=16 Score=31.07 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=10.5
Q ss_pred eeeehhhhHHHHHHHHHHHhhc
Q 046642 156 TVVIGYASGTIIGVILGHIFST 177 (207)
Q Consensus 156 ~~~i~~~~~~~~~~~~~~~~~~ 177 (207)
++.|++++++||+.++.|+.||
T Consensus 369 IaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 369 IAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred eeeeeehhHHHHHHHHHHHhhh
Confidence 3344444444555555555543
No 132
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=43.18 E-value=18 Score=24.20 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=6.5
Q ss_pred eeehhhhHHHHHHHH
Q 046642 157 VVIGYASGTIIGVIL 171 (207)
Q Consensus 157 ~~i~~~~~~~~~~~~ 171 (207)
+++|+++++++.-++
T Consensus 19 ~LVGVv~~al~~SlL 33 (102)
T PF15176_consen 19 FLVGVVVTALVTSLL 33 (102)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344554444443333
No 133
>PF15345 TMEM51: Transmembrane protein 51
Probab=42.58 E-value=52 Score=25.65 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=3.0
Q ss_pred ceeeeeh
Q 046642 154 WKTVVIG 160 (207)
Q Consensus 154 ~~~~~i~ 160 (207)
+.++++|
T Consensus 60 VAyVLVG 66 (233)
T PF15345_consen 60 VAYVLVG 66 (233)
T ss_pred EEEehhh
Confidence 3444444
No 134
>PF14851 FAM176: FAM176 family
Probab=42.53 E-value=11 Score=27.38 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=10.4
Q ss_pred eeeeehhhhHHHHHHHHHHH
Q 046642 155 KTVVIGYASGTIIGVILGHI 174 (207)
Q Consensus 155 ~~~~i~~~~~~~~~~~~~~~ 174 (207)
++++.|+++|+++.++++++
T Consensus 24 LYFv~gVC~GLlLtLcllV~ 43 (153)
T PF14851_consen 24 LYFVSGVCAGLLLTLCLLVI 43 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34555666665555444433
No 135
>COG1288 Predicted membrane protein [Function unknown]
Probab=42.45 E-value=31 Score=29.68 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=20.5
Q ss_pred hhHHHHHhccCccccCcccchhhhhhc
Q 046642 180 YEWLAKTFHLQPKANGRRRRVERHRQQ 206 (207)
Q Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
-.||.++.++.+..+.....++++++.
T Consensus 234 ~~~Ya~KvkkdP~~S~v~~~~~e~r~~ 260 (481)
T COG1288 234 VYWYASKVKKDPTLSLVYEDDEEFRET 260 (481)
T ss_pred HHHHHHHHhcCccccccccchHHHHHH
Confidence 348888888888888777777777763
No 136
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=38.02 E-value=47 Score=18.76 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=4.6
Q ss_pred hhhHHHHHHHHH
Q 046642 161 YASGTIIGVILG 172 (207)
Q Consensus 161 ~~~~~~~~~~~~ 172 (207)
++.|++++++++
T Consensus 8 iilg~~ll~~Li 19 (49)
T PF05624_consen 8 IILGALLLLLLI 19 (49)
T ss_pred HHHHHHHHHHHH
Confidence 344443333333
No 137
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.23 E-value=26 Score=16.71 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=4.5
Q ss_pred CCCEEecCCC
Q 046642 64 AIESMDLSSN 73 (207)
Q Consensus 64 ~L~~L~ls~N 73 (207)
+|+.|+++++
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444444
No 138
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=36.44 E-value=32 Score=33.11 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=18.1
Q ss_pred ecceeeeehhhhHHHHHHHHHHHhhc
Q 046642 152 FGWKTVVIGYASGTIIGVILGHIFST 177 (207)
Q Consensus 152 ~~~~~~~i~~~~~~~~~~~~~~~~~~ 177 (207)
..++++++++++|++++++++++++.
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK 1001 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWK 1001 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHh
Confidence 45667777778887777777766643
No 139
>PHA03265 envelope glycoprotein D; Provisional
Probab=36.40 E-value=45 Score=27.73 Aligned_cols=7 Identities=14% Similarity=0.430 Sum_probs=3.1
Q ss_pred eeeeehh
Q 046642 155 KTVVIGY 161 (207)
Q Consensus 155 ~~~~i~~ 161 (207)
..++||.
T Consensus 350 ~g~~ig~ 356 (402)
T PHA03265 350 VGISVGL 356 (402)
T ss_pred cceEEcc
Confidence 3444443
No 140
>PHA03164 hypothetical protein; Provisional
Probab=35.33 E-value=12 Score=23.57 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=7.5
Q ss_pred eehhhhHHHHHHHHHHHhh
Q 046642 158 VIGYASGTIIGVILGHIFS 176 (207)
Q Consensus 158 ~i~~~~~~~~~~~~~~~~~ 176 (207)
+.|++.++++++++++.++
T Consensus 63 LtgLaIamILfiifvlyvF 81 (88)
T PHA03164 63 LTGLAIAMILFIIFVLYVF 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHhe
Confidence 3333333344444444333
No 141
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=35.29 E-value=82 Score=17.81 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=3.6
Q ss_pred ccCccccCc
Q 046642 188 HLQPKANGR 196 (207)
Q Consensus 188 ~~~~~~~~~ 196 (207)
+..++.++.
T Consensus 38 r~~~~snea 46 (54)
T PF06716_consen 38 RNNPQSNEA 46 (54)
T ss_pred ccCCCcchh
Confidence 334444433
No 142
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=35.10 E-value=48 Score=18.20 Aligned_cols=13 Identities=8% Similarity=0.284 Sum_probs=7.8
Q ss_pred hhhhcccccEEEc
Q 046642 10 YEKLSNLITAIIL 22 (207)
Q Consensus 10 ~~~~l~~L~~L~L 22 (207)
...++.+++.|.+
T Consensus 7 ~~~iP~~l~~L~~ 19 (44)
T PF05725_consen 7 PGSIPSSLKSLIF 19 (44)
T ss_pred CCeeCCCCeEEEE
Confidence 3445666666666
No 143
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=34.76 E-value=1.1e+02 Score=24.58 Aligned_cols=35 Identities=14% Similarity=-0.061 Sum_probs=18.5
Q ss_pred ceeeeehhhhHHHHHHHHHHHhhcchhhHHHHHhcc
Q 046642 154 WKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFHL 189 (207)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 189 (207)
...++.|+++ ++++.++++++.+++|+.++....+
T Consensus 216 v~g~~~G~~~-L~ll~~lv~~~vr~krk~k~~eMEr 250 (278)
T PF06697_consen 216 VVGVVGGVVL-LGLLSLLVAMLVRYKRKKKIEEMER 250 (278)
T ss_pred EEEehHHHHH-HHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3444555544 4444455666666666555555533
No 144
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=34.60 E-value=22 Score=22.55 Aligned_cols=10 Identities=0% Similarity=-0.117 Sum_probs=3.8
Q ss_pred HHHhhcchhh
Q 046642 172 GHIFSTRKYE 181 (207)
Q Consensus 172 ~~~~~~~~~~ 181 (207)
..++.+|+.+
T Consensus 20 ~wl~lHY~~k 29 (75)
T TIGR02976 20 LWLILHYRSK 29 (75)
T ss_pred HHHHHHHHhh
Confidence 3333334333
No 145
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=34.28 E-value=37 Score=19.30 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHhh
Q 046642 162 ASGTIIGVILGHIFS 176 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~ 176 (207)
+.++++++++.+..+
T Consensus 25 ig~avL~v~V~i~v~ 39 (46)
T PF10389_consen 25 IGGAVLGVIVGIAVY 39 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 146
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.70 E-value=24 Score=21.31 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 046642 165 TIIGVILGHI 174 (207)
Q Consensus 165 ~~~~~~~~~~ 174 (207)
++++++++.+
T Consensus 28 f~~G~llg~l 37 (68)
T PF06305_consen 28 FLLGALLGWL 37 (68)
T ss_pred HHHHHHHHHH
Confidence 3334343333
No 147
>PF15179 Myc_target_1: Myc target protein 1
Probab=33.34 E-value=29 Score=25.98 Aligned_cols=11 Identities=18% Similarity=0.625 Sum_probs=4.0
Q ss_pred eehhhhHHHHH
Q 046642 158 VIGYASGTIIG 168 (207)
Q Consensus 158 ~i~~~~~~~~~ 168 (207)
++++++.++++
T Consensus 22 IlaF~vSm~iG 32 (197)
T PF15179_consen 22 ILAFCVSMAIG 32 (197)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 148
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=32.91 E-value=31 Score=22.91 Aligned_cols=11 Identities=0% Similarity=-0.200 Sum_probs=4.9
Q ss_pred chhhHHHHHhc
Q 046642 178 RKYEWLAKTFH 188 (207)
Q Consensus 178 ~~~~w~~~~~~ 188 (207)
.++.-+.+|..
T Consensus 40 ~~r~~r~~MKE 50 (121)
T PF10669_consen 40 DSRQVRIRMKE 50 (121)
T ss_pred hHHHHHHHHHH
Confidence 33444455553
No 149
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=32.46 E-value=21 Score=25.07 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=5.3
Q ss_pred eeehhhhHHHHHHH
Q 046642 157 VVIGYASGTIIGVI 170 (207)
Q Consensus 157 ~~i~~~~~~~~~~~ 170 (207)
+++.++++++++++
T Consensus 101 ia~~~il~il~~i~ 114 (139)
T PHA03099 101 IPSPGIVLVLVGII 114 (139)
T ss_pred hhhhHHHHHHHHHH
Confidence 33333333333333
No 150
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=32.38 E-value=2.7 Score=36.55 Aligned_cols=86 Identities=28% Similarity=0.342 Sum_probs=40.4
Q ss_pred ccccEEEccCCCCCCC----CchhccCCCC-CCEEECcCCcCCCC----CcccCCCC-CCCCEEecCCCCCCCCCch---
Q 046642 15 NLITAIILSNNSFVGE----IPTSIANLKG-LRNLDLSNNNLQGR----IPLSLSNL-TAIESMDLSSNMLSGNIPQ--- 81 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~----~p~~~~~l~~-L~~L~Ls~n~l~~~----~p~~~~~l-~~L~~L~ls~N~l~~~~p~--- 81 (207)
.++++|.++++.++.. +...+...+. +..+++..|.+... ....+..+ ..++.++++.|.++..-..
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 3455555555555411 1111223333 44455555555421 11223333 4556666666666543332
Q ss_pred -hhhcCCccceecCCCCcCc
Q 046642 82 -QLSELTSLEFFDVSDNLLT 100 (207)
Q Consensus 82 -~~~~l~~L~~l~l~~N~l~ 100 (207)
.+..++.++.+.++.|.+.
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHhhhHHHHHhhcccCccc
Confidence 2333445666666666554
No 151
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=31.44 E-value=21 Score=29.10 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=9.0
Q ss_pred eeehhhhHH-HHHHHHHHHh
Q 046642 157 VVIGYASGT-IIGVILGHIF 175 (207)
Q Consensus 157 ~~i~~~~~~-~~~~~~~~~~ 175 (207)
.++.+++|+ ++++++++++
T Consensus 271 ~~vPIaVG~~La~lvlivLi 290 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVLI 290 (306)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 345555554 4444444443
No 152
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=31.06 E-value=55 Score=20.32 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=15.8
Q ss_pred eehhhhHHHHHHHHHHHhhcchh
Q 046642 158 VIGYASGTIIGVILGHIFSTRKY 180 (207)
Q Consensus 158 ~i~~~~~~~~~~~~~~~~~~~~~ 180 (207)
++|+++|+++++++++++.-...
T Consensus 2 ~~g~l~Ga~~Ga~~glL~aP~sG 24 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLFAPKSG 24 (74)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCc
Confidence 35677777888888877765443
No 153
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=30.75 E-value=49 Score=29.88 Aligned_cols=8 Identities=13% Similarity=0.219 Sum_probs=3.4
Q ss_pred eeeehhhh
Q 046642 156 TVVIGYAS 163 (207)
Q Consensus 156 ~~~i~~~~ 163 (207)
++++|+++
T Consensus 270 WII~gVlv 277 (684)
T PF12877_consen 270 WIIAGVLV 277 (684)
T ss_pred EEEehHhH
Confidence 34444433
No 154
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=29.73 E-value=69 Score=19.46 Aligned_cols=22 Identities=14% Similarity=-0.105 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHhhcchhhHH
Q 046642 162 ASGTIIGVILGHIFSTRKYEWL 183 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~w~ 183 (207)
+.++++++.++.+...+.++|+
T Consensus 11 ~l~AlI~~pLGyl~~~~~~r~~ 32 (62)
T PF11120_consen 11 ILCALIFFPLGYLARRWLPRIR 32 (62)
T ss_pred HHHHHHHHhHHHHHHHHhHHHH
Confidence 3444555555555544444433
No 155
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=29.33 E-value=29 Score=19.38 Aligned_cols=9 Identities=44% Similarity=0.818 Sum_probs=7.2
Q ss_pred CCCCCCCCC
Q 046642 120 NPGLCGGPL 128 (207)
Q Consensus 120 n~~~c~~~~ 128 (207)
||+.|+|..
T Consensus 1 NP~~CdC~l 9 (51)
T smart00082 1 NPFICDCEL 9 (51)
T ss_pred CCccCcCCc
Confidence 788898865
No 156
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=28.96 E-value=18 Score=30.25 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=0.0
Q ss_pred hhhhHHH
Q 046642 160 GYASGTI 166 (207)
Q Consensus 160 ~~~~~~~ 166 (207)
|++++++
T Consensus 14 gIcvaLl 20 (404)
T PF02158_consen 14 GICVALL 20 (404)
T ss_dssp -------
T ss_pred hhhHHHH
Confidence 3444433
No 157
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=28.34 E-value=29 Score=26.71 Aligned_cols=22 Identities=5% Similarity=0.083 Sum_probs=10.7
Q ss_pred eeeeehhhhHHHHHHHHHHHhh
Q 046642 155 KTVVIGYASGTIIGVILGHIFS 176 (207)
Q Consensus 155 ~~~~i~~~~~~~~~~~~~~~~~ 176 (207)
++.+++.+++++++++++.+++
T Consensus 40 ~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 40 MIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeecchhhhHHHHHHHHHHH
Confidence 3344444455555555555554
No 158
>PRK10132 hypothetical protein; Provisional
Probab=27.50 E-value=59 Score=22.16 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=5.2
Q ss_pred HHHHHHHHHhh
Q 046642 166 IIGVILGHIFS 176 (207)
Q Consensus 166 ~~~~~~~~~~~ 176 (207)
.+++++++++.
T Consensus 95 gvG~llG~Ll~ 105 (108)
T PRK10132 95 AVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHh
Confidence 34445555543
No 159
>PRK09458 pspB phage shock protein B; Provisional
Probab=27.30 E-value=35 Score=21.60 Aligned_cols=17 Identities=6% Similarity=-0.123 Sum_probs=7.3
Q ss_pred HHHHHHHHhhcchhhHH
Q 046642 167 IGVILGHIFSTRKYEWL 183 (207)
Q Consensus 167 ~~~~~~~~~~~~~~~w~ 183 (207)
++|+-+.+++.|+-+|+
T Consensus 15 ifVaPiWL~LHY~sk~~ 31 (75)
T PRK09458 15 LFVAPIWLWLHYRSKRQ 31 (75)
T ss_pred HHHHHHHHHHhhccccc
Confidence 33333444444544443
No 160
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=27.03 E-value=21 Score=30.78 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred eeeehhhhHHHHHHHHHHHh
Q 046642 156 TVVIGYASGTIIGVILGHIF 175 (207)
Q Consensus 156 ~~~i~~~~~~~~~~~~~~~~ 175 (207)
.+++++++++++++++++++
T Consensus 353 ~~l~vVlgvavlivVv~viv 372 (439)
T PF02480_consen 353 ALLGVVLGVAVLIVVVGVIV 372 (439)
T ss_dssp --------------------
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 34444444444443333333
No 161
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.85 E-value=74 Score=19.80 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=14.9
Q ss_pred ehhhhHHHHHHHHHHHhhcchhhHHHHHhccCc
Q 046642 159 IGYASGTIIGVILGHIFSTRKYEWLAKTFHLQP 191 (207)
Q Consensus 159 i~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 191 (207)
++++++++++++.++++. |+...++.+..|
T Consensus 8 l~ivl~ll~G~~~G~fia---rk~~~k~lk~NP 37 (71)
T COG3763 8 LLIVLALLAGLIGGFFIA---RKQMKKQLKDNP 37 (71)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhhCC
Confidence 444555556666555443 334455554443
No 162
>PHA02088 hypothetical protein
Probab=26.79 E-value=48 Score=22.13 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=9.2
Q ss_pred HHHHHhhcchhhHHHHH
Q 046642 170 ILGHIFSTRKYEWLAKT 186 (207)
Q Consensus 170 ~~~~~~~~~~~~w~~~~ 186 (207)
+++.++-.|..+|+.+-
T Consensus 14 liac~~s~wd~~w~~k~ 30 (125)
T PHA02088 14 LIACCFSTWDSRWRKKA 30 (125)
T ss_pred HHHhhhHHhhHHHHHHH
Confidence 44445555666666553
No 163
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=26.68 E-value=39 Score=18.43 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=10.1
Q ss_pred eeehhhhHHHHHHHHHHHh
Q 046642 157 VVIGYASGTIIGVILGHIF 175 (207)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~ 175 (207)
++++.++++.++.++.+++
T Consensus 11 WlVgtv~G~~vi~lvglFf 29 (40)
T PF01788_consen 11 WLVGTVAGIAVIGLVGLFF 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhe
Confidence 4556666655554544444
No 164
>PF10725 DUF2517: Protein of unknown function (DUF2517); InterPro: IPR019663 This entry represents proteins conserved in Proteobacteria and includes the predicted protein YbfA. The function is not known.
Probab=26.67 E-value=49 Score=19.92 Aligned_cols=25 Identities=4% Similarity=-0.011 Sum_probs=14.1
Q ss_pred hhcchhhHHHHHh-ccCccccCcccc
Q 046642 175 FSTRKYEWLAKTF-HLQPKANGRRRR 199 (207)
Q Consensus 175 ~~~~~~~w~~~~~-~~~~~~~~~~~~ 199 (207)
+++..|.++..+. +.|.+.++++.=
T Consensus 29 Lf~~dRArfYSyLhrvW~KTSdkPVW 54 (63)
T PF10725_consen 29 LFRSDRARFYSYLHRVWSKTSDKPVW 54 (63)
T ss_pred eeecchhHHHHHHHHHHHhcCCcchH
Confidence 3444455555555 557777776643
No 165
>PF15102 TMEM154: TMEM154 protein family
Probab=24.74 E-value=39 Score=24.37 Aligned_cols=24 Identities=8% Similarity=-0.126 Sum_probs=11.9
Q ss_pred eehhhhHHHHHHHHHHHhhcchhh
Q 046642 158 VIGYASGTIIGVILGHIFSTRKYE 181 (207)
Q Consensus 158 ~i~~~~~~~~~~~~~~~~~~~~~~ 181 (207)
++.+++..++++++++++++.-.+
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~ 81 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIY 81 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeE
Confidence 443444445555555555554333
No 166
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=24.60 E-value=54 Score=18.38 Aligned_cols=6 Identities=0% Similarity=0.274 Sum_probs=2.2
Q ss_pred hhHHHH
Q 046642 162 ASGTII 167 (207)
Q Consensus 162 ~~~~~~ 167 (207)
++++++
T Consensus 12 g~t~~~ 17 (46)
T PF04995_consen 12 GVTALV 17 (46)
T ss_pred HHHHHH
Confidence 333333
No 167
>PF02430 AMA-1: Apical membrane antigen 1; InterPro: IPR003298 A novel antigen of Plasmodium falciparum has been cloned that contains a hydrophobic domain typical of an integral membrane protein. The antigen is designated apical membrane antigen 1 (AMA-1) by virtue of appearing to be located in the apical complex []. AMA-1 appears to be transported to the merozoite surface close to the time of schizont rupture. The 66kDa merozoite surface antigen (PK66) of Plasmodium knowlesi, a simian malaria, possesses vaccine-related properties believed to originate from a receptor-like role in parasite invasion of erythrocytes []. The sequence of PK66 is conserved throughout plasmodium, and shows high similarity to P. falciparum AMA-1. Following schizont rupture, the distribution of PK66 changes in a coordinate manner associated with merozoite invasion. Prior to rupture, the protein is concentrated at the apical end, following which it distributes itself entirely across the surface of the free merozoite. Immunofluorescence studies suggest that, during invasion, PK66 is excluded from the erythrocyte at, and behind, the invasion interface []. ; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2Y8R_D 2X2Z_A 2Y8T_A 2Y8S_D 1HN6_A 2Z8V_B 2Z8W_A 1Z40_E 2Q8B_A 2Q8A_A ....
Probab=24.43 E-value=25 Score=30.20 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcchhhHHHHHh
Q 046642 167 IGVILGHIFSTRKYEWLAKTF 187 (207)
Q Consensus 167 ~~~~~~~~~~~~~~~w~~~~~ 187 (207)
++++.+++++.||+-|+.+..
T Consensus 440 ~~~~~l~~~~~~k~~~~~kk~ 460 (471)
T PF02430_consen 440 AVLLALAIYWYYKRLWKTKKK 460 (471)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHhhhhccccC
Confidence 333444455556667766444
No 168
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=24.11 E-value=44 Score=24.08 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=7.1
Q ss_pred eehhhhHHHHHHHHHHH
Q 046642 158 VIGYASGTIIGVILGHI 174 (207)
Q Consensus 158 ~i~~~~~~~~~~~~~~~ 174 (207)
++++++|+++++++++.
T Consensus 121 i~~~i~g~ll~i~~giy 137 (145)
T PF10661_consen 121 ILLSIGGILLAICGGIY 137 (145)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 169
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=23.88 E-value=49 Score=26.83 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=5.5
Q ss_pred HHHHHhhcchhhH
Q 046642 170 ILGHIFSTRKYEW 182 (207)
Q Consensus 170 ~~~~~~~~~~~~w 182 (207)
+++.+++.+|++|
T Consensus 305 ~~~~~~~fkrk~W 317 (318)
T TIGR00383 305 ALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHcCC
Confidence 3333334444555
No 170
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=23.77 E-value=66 Score=29.26 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=14.5
Q ss_pred eeeeehhhhHHHHHHHHHHHhhc
Q 046642 155 KTVVIGYASGTIIGVILGHIFST 177 (207)
Q Consensus 155 ~~~~i~~~~~~~~~~~~~~~~~~ 177 (207)
..++|.++++++++++++.++..
T Consensus 829 atvViVVcVgfLv~mvvlGv~ri 851 (952)
T KOG1834|consen 829 ATVVIVVCVGFLVFMVVLGVLRI 851 (952)
T ss_pred eEEEEEeehhHHHHHHHHhheee
Confidence 44566667777777666666544
No 171
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=23.66 E-value=26 Score=27.72 Aligned_cols=24 Identities=21% Similarity=0.585 Sum_probs=0.0
Q ss_pred cceeeeehhhhHHHHHHHHHHHhh
Q 046642 153 GWKTVVIGYASGTIIGVILGHIFS 176 (207)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~~~~~~ 176 (207)
.|..+++...+..++++++++++|
T Consensus 214 q~~~iAL~sl~SLVIGFvlG~l~W 237 (273)
T PF02404_consen 214 QWPAIALPSLFSLVIGFVLGALYW 237 (273)
T ss_dssp ------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666666653
No 172
>PRK09546 zntB zinc transporter; Reviewed
Probab=23.38 E-value=53 Score=26.87 Aligned_cols=11 Identities=18% Similarity=0.658 Sum_probs=4.6
Q ss_pred HHHhhcchhhH
Q 046642 172 GHIFSTRKYEW 182 (207)
Q Consensus 172 ~~~~~~~~~~w 182 (207)
+.+++.+|++|
T Consensus 313 ~~~~~fkrk~W 323 (324)
T PRK09546 313 GVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHhccc
Confidence 33333344444
No 173
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=23.25 E-value=33 Score=26.46 Aligned_cols=8 Identities=0% Similarity=0.056 Sum_probs=3.0
Q ss_pred HHHHHhhc
Q 046642 170 ILGHIFST 177 (207)
Q Consensus 170 ~~~~~~~~ 177 (207)
++++..++
T Consensus 201 vv~i~~ir 208 (226)
T PHA02662 201 VVAVSLLR 208 (226)
T ss_pred HHHHHHHH
Confidence 33333333
No 174
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=22.32 E-value=96 Score=28.14 Aligned_cols=6 Identities=17% Similarity=-0.147 Sum_probs=2.2
Q ss_pred eehhhh
Q 046642 158 VIGYAS 163 (207)
Q Consensus 158 ~i~~~~ 163 (207)
++++.+
T Consensus 393 ~~~~f~ 398 (807)
T KOG1094|consen 393 LIIIFV 398 (807)
T ss_pred hHHHHH
Confidence 333333
No 175
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=21.92 E-value=50 Score=25.25 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=5.5
Q ss_pred ceeeeehhhhHHHH
Q 046642 154 WKTVVIGYASGTII 167 (207)
Q Consensus 154 ~~~~~i~~~~~~~~ 167 (207)
|..-.+|+++.+++
T Consensus 180 w~pn~lgiG~v~I~ 193 (209)
T PF11353_consen 180 WVPNPLGIGTVLIV 193 (209)
T ss_pred EeccHHHHHHHHHH
Confidence 33334444333333
No 176
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=21.89 E-value=79 Score=22.25 Aligned_cols=18 Identities=22% Similarity=0.528 Sum_probs=9.5
Q ss_pred HHHHHHHhhcchhhHHHH
Q 046642 168 GVILGHIFSTRKYEWLAK 185 (207)
Q Consensus 168 ~~~~~~~~~~~~~~w~~~ 185 (207)
+++++.+++.+|.+|...
T Consensus 12 ~~i~~t~lf~~R~r~~~~ 29 (128)
T PF09435_consen 12 VLIIGTLLFFTRHRWLPL 29 (128)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444455566666654
No 177
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=21.59 E-value=44 Score=21.20 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=5.4
Q ss_pred eeehhhhHHHHHH
Q 046642 157 VVIGYASGTIIGV 169 (207)
Q Consensus 157 ~~i~~~~~~~~~~ 169 (207)
+++|+++|+++++
T Consensus 62 l~l~~~~Gl~lgi 74 (82)
T PF13807_consen 62 LALGLFLGLILGI 74 (82)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 178
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=21.40 E-value=1.2e+02 Score=18.35 Aligned_cols=23 Identities=13% Similarity=-0.058 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHhhcchhhHHH
Q 046642 162 ASGTIIGVILGHIFSTRKYEWLA 184 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~w~~ 184 (207)
+.++++++-++.+..++.++|+.
T Consensus 11 ~lcALIf~pLgyl~~r~~~r~r~ 33 (62)
T TIGR03493 11 LLCALIFFPLGYLARRSLRRIRT 33 (62)
T ss_pred HHHHHHHHhHHHHHHhhhHHHHH
Confidence 34445555555555444444443
No 179
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=21.27 E-value=62 Score=26.53 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhcchhhH
Q 046642 164 GTIIGVILGHIFSTRKYEW 182 (207)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~w 182 (207)
+++++++++..++.+|++|
T Consensus 303 ~~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 303 ILMLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHHHHHHHHHHHhcCc
Confidence 3334444444444455555
No 180
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=20.95 E-value=52 Score=21.90 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=10.5
Q ss_pred cceeeeehhhhHHHHHHHHHHHhhc
Q 046642 153 GWKTVVIGYASGTIIGVILGHIFST 177 (207)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~~~~~~~ 177 (207)
.|.+++|.++.+++++-+++.+++|
T Consensus 17 PWeIfLItLasVvvavGl~aGLfFc 41 (106)
T PF14654_consen 17 PWEIFLITLASVVVAVGLFAGLFFC 41 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555544443333333333333
Done!