Query 046642
Match_columns 207
No_of_seqs 306 out of 2509
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 04:34:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.8 1.4E-21 4.8E-26 174.8 8.5 125 12-137 629-753 (768)
2 2wfh_A SLIT homolog 2 protein 99.8 1.6E-18 5.5E-23 130.4 10.7 117 11-128 27-144 (193)
3 1w8a_A SLIT protein; signaling 99.8 2.3E-18 7.9E-23 129.4 9.4 117 12-128 26-144 (192)
4 2v70_A SLIT-2, SLIT homolog 2 99.8 3.2E-18 1.1E-22 131.3 10.2 118 11-128 53-171 (220)
5 2v9t_B SLIT homolog 2 protein 99.8 4E-18 1.4E-22 130.7 10.2 118 11-128 52-170 (220)
6 3j0a_A TOLL-like receptor 5; m 99.7 1.2E-18 3.9E-23 157.4 4.9 92 33-128 474-565 (844)
7 2o6r_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 121.0 11.6 117 11-127 24-141 (177)
8 3e6j_A Variable lymphocyte rec 99.7 7.4E-17 2.5E-21 124.3 12.4 115 12-127 61-176 (229)
9 1ogq_A PGIP-2, polygalacturona 99.7 1.3E-17 4.4E-22 134.3 7.7 114 17-132 199-312 (313)
10 2o6s_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 118.5 13.2 116 12-127 49-165 (208)
11 1p9a_G Platelet glycoprotein I 99.7 2.5E-16 8.7E-21 125.5 12.4 114 13-127 98-212 (290)
12 3m19_A Variable lymphocyte rec 99.7 3.9E-16 1.3E-20 121.7 13.1 87 14-100 58-144 (251)
13 3g39_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 115.3 11.5 108 17-127 11-119 (170)
14 3rfs_A Internalin B, repeat mo 99.7 5E-16 1.7E-20 122.5 13.1 115 13-127 107-222 (272)
15 2o6q_A Variable lymphocyte rec 99.7 7E-16 2.4E-20 121.5 13.0 116 12-127 106-222 (270)
16 4g8a_A TOLL-like receptor 4; l 99.7 1.6E-16 5.5E-21 138.0 9.7 119 10-128 464-585 (635)
17 1w8a_A SLIT protein; signaling 99.7 3.5E-16 1.2E-20 117.4 10.3 94 11-104 50-143 (192)
18 2r9u_A Variable lymphocyte rec 99.7 1.2E-15 4E-20 112.9 11.7 107 18-127 15-122 (174)
19 3g39_A Variable lymphocyte rec 99.6 8.4E-16 2.9E-20 113.2 9.8 94 11-104 26-119 (170)
20 3v47_A TOLL-like receptor 5B a 99.6 7.7E-16 2.6E-20 129.3 10.2 118 11-128 295-413 (455)
21 3e6j_A Variable lymphocyte rec 99.6 2.5E-15 8.4E-20 115.8 11.4 111 11-122 36-147 (229)
22 2v9t_B SLIT homolog 2 protein 99.6 1.7E-15 5.8E-20 116.1 10.2 112 11-122 28-140 (220)
23 2r9u_A Variable lymphocyte rec 99.6 2.3E-15 7.8E-20 111.3 9.8 94 11-104 29-122 (174)
24 4g8a_A TOLL-like receptor 4; l 99.6 1.1E-15 3.8E-20 132.7 9.3 118 5-122 42-160 (635)
25 1ozn_A Reticulon 4 receptor; N 99.6 9.1E-16 3.1E-20 121.6 7.8 90 13-102 103-192 (285)
26 3zyj_A Leucine-rich repeat-con 99.6 2.9E-15 9.8E-20 125.8 10.0 116 11-128 181-297 (440)
27 3m19_A Variable lymphocyte rec 99.6 9.5E-15 3.3E-19 113.8 11.7 112 11-122 31-143 (251)
28 2ifg_A High affinity nerve gro 99.6 4.3E-15 1.5E-19 120.8 10.0 107 19-127 12-120 (347)
29 2o6s_A Variable lymphocyte rec 99.6 1.5E-14 5.2E-19 109.4 12.0 112 11-122 24-136 (208)
30 3rfs_A Internalin B, repeat mo 99.6 2.2E-14 7.6E-19 113.0 12.9 108 12-121 60-168 (272)
31 2v70_A SLIT-2, SLIT homolog 2 99.6 9.6E-15 3.3E-19 111.8 10.0 111 12-122 29-141 (220)
32 3vq2_A TLR4, TOLL-like recepto 99.6 2.5E-15 8.6E-20 130.5 7.6 116 12-128 445-563 (606)
33 3zyi_A Leucine-rich repeat-con 99.6 6.4E-15 2.2E-19 124.1 9.8 116 11-128 192-308 (452)
34 2z66_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 119.0 8.0 110 12-121 123-234 (306)
35 2je0_A Acidic leucine-rich nuc 99.6 7.7E-15 2.6E-19 105.3 8.1 109 11-121 13-124 (149)
36 4ezg_A Putative uncharacterize 99.5 1.3E-14 4.4E-19 109.1 8.5 109 10-121 61-170 (197)
37 2ell_A Acidic leucine-rich nuc 99.5 1.1E-14 3.9E-19 106.5 7.5 109 12-122 21-132 (168)
38 2z63_A TOLL-like receptor 4, v 99.5 1.2E-14 4.2E-19 125.1 8.8 118 11-128 417-536 (570)
39 1p9a_G Platelet glycoprotein I 99.5 4.1E-14 1.4E-18 112.7 11.1 108 13-121 75-183 (290)
40 2wfh_A SLIT homolog 2 protein 99.5 4.2E-14 1.4E-18 106.2 10.4 94 10-103 49-142 (193)
41 1ogq_A PGIP-2, polygalacturona 99.5 4.7E-15 1.6E-19 119.3 4.6 109 12-120 73-184 (313)
42 3rgz_A Protein brassinosteroid 99.5 2.9E-14 9.9E-19 127.5 9.9 116 12-127 439-555 (768)
43 2z62_A TOLL-like receptor 4, v 99.5 5E-14 1.7E-18 111.0 9.6 90 12-101 73-163 (276)
44 2o6r_A Variable lymphocyte rec 99.5 6.4E-14 2.2E-18 103.4 9.4 94 11-104 48-141 (177)
45 2xot_A Amphoterin-induced prot 99.5 3.3E-14 1.1E-18 116.5 8.5 87 14-100 63-149 (361)
46 4fcg_A Uncharacterized protein 99.5 5.4E-14 1.8E-18 113.9 9.5 108 13-122 148-265 (328)
47 3o6n_A APL1; leucine-rich repe 99.5 2.7E-14 9.1E-19 117.9 7.5 115 8-126 241-355 (390)
48 2ell_A Acidic leucine-rich nuc 99.5 4E-14 1.4E-18 103.6 7.6 108 12-121 46-158 (168)
49 2o6q_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 107.9 11.6 108 13-120 35-143 (270)
50 2xot_A Amphoterin-induced prot 99.5 4.2E-14 1.4E-18 115.9 8.4 112 11-122 35-148 (361)
51 3t6q_A CD180 antigen; protein- 99.5 1.6E-14 5.6E-19 125.4 6.1 114 13-127 447-564 (606)
52 2id5_A Lingo-1, leucine rich r 99.5 2.8E-14 9.7E-19 120.6 7.3 112 16-127 225-337 (477)
53 4fcg_A Uncharacterized protein 99.5 1E-13 3.5E-18 112.2 10.2 110 14-125 182-292 (328)
54 1ziw_A TOLL-like receptor 3; i 99.5 3.8E-14 1.3E-18 124.7 8.2 93 36-128 533-627 (680)
55 2z7x_B TOLL-like receptor 1, v 99.5 1.7E-13 5.9E-18 116.9 11.3 112 12-127 371-485 (520)
56 2z62_A TOLL-like receptor 4, v 99.5 1.1E-13 3.7E-18 109.1 9.2 89 13-101 26-114 (276)
57 4ezg_A Putative uncharacterize 99.5 8.1E-14 2.8E-18 104.7 8.0 106 12-121 41-147 (197)
58 1ozn_A Reticulon 4 receptor; N 99.5 2E-13 6.7E-18 108.1 10.6 108 13-120 54-163 (285)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.2E-13 4.3E-18 119.1 10.1 110 14-127 402-514 (562)
60 2z80_A TOLL-like receptor 2, v 99.5 1.5E-13 5E-18 112.0 9.7 110 11-121 48-160 (353)
61 2z81_A CD282 antigen, TOLL-lik 99.5 1.2E-13 4.1E-18 118.5 9.5 110 12-121 23-134 (549)
62 2z81_A CD282 antigen, TOLL-lik 99.5 2.2E-13 7.5E-18 116.9 11.0 113 11-127 383-514 (549)
63 3vq2_A TLR4, TOLL-like recepto 99.5 1.6E-13 5.5E-18 119.1 10.2 110 12-121 29-139 (606)
64 3oja_B Anopheles plasmodium-re 99.5 6.3E-14 2.1E-18 122.0 7.5 115 8-126 247-361 (597)
65 3zyi_A Leucine-rich repeat-con 99.5 1.5E-13 5E-18 115.7 9.3 93 11-103 71-163 (452)
66 2je0_A Acidic leucine-rich nuc 99.5 6.1E-14 2.1E-18 100.6 5.9 91 12-104 39-130 (149)
67 1dce_A Protein (RAB geranylger 99.5 2.9E-13 9.9E-18 117.2 11.0 102 16-122 442-545 (567)
68 3oja_B Anopheles plasmodium-re 99.5 4.1E-13 1.4E-17 116.8 11.7 111 11-121 71-182 (597)
69 3o6n_A APL1; leucine-rich repe 99.5 5.4E-13 1.8E-17 110.1 11.8 112 10-121 64-176 (390)
70 1xku_A Decorin; proteoglycan, 99.5 2.7E-13 9.3E-18 109.4 9.7 108 11-122 167-275 (330)
71 4eco_A Uncharacterized protein 99.5 4E-13 1.4E-17 117.8 11.4 105 16-124 489-601 (636)
72 3t6q_A CD180 antigen; protein- 99.5 1.6E-13 5.5E-18 119.1 8.8 111 11-121 29-140 (606)
73 2id5_A Lingo-1, leucine rich r 99.4 2.3E-13 7.7E-18 115.1 9.3 91 13-103 30-120 (477)
74 1a9n_A U2A', U2A'; complex (nu 99.4 7.7E-14 2.6E-18 103.0 5.6 107 13-123 17-126 (176)
75 4b8c_D Glucose-repressible alc 99.4 2.5E-13 8.6E-18 120.8 9.4 109 11-123 220-329 (727)
76 3oja_A Leucine-rich immune mol 99.4 1.3E-13 4.4E-18 117.4 7.0 112 12-126 141-253 (487)
77 3v47_A TOLL-like receptor 5B a 99.4 3.2E-13 1.1E-17 113.3 9.2 109 15-123 275-384 (455)
78 2ft3_A Biglycan; proteoglycan, 99.4 3.3E-13 1.1E-17 109.0 8.8 108 15-123 193-307 (332)
79 3zyj_A Leucine-rich repeat-con 99.4 4.2E-13 1.4E-17 112.5 9.6 92 11-102 60-151 (440)
80 2z66_A Variable lymphocyte rec 99.4 2E-13 6.7E-18 109.1 7.2 108 14-121 100-210 (306)
81 2ifg_A High affinity nerve gro 99.4 3.8E-13 1.3E-17 109.3 8.5 89 14-103 30-119 (347)
82 1dce_A Protein (RAB geranylger 99.4 4.1E-13 1.4E-17 116.3 9.1 93 11-106 459-552 (567)
83 3j0a_A TOLL-like receptor 5; m 99.4 2.8E-13 9.5E-18 122.3 8.2 109 13-121 22-134 (844)
84 1a9n_A U2A', U2A'; complex (nu 99.4 3.2E-13 1.1E-17 99.6 7.1 107 10-120 37-150 (176)
85 2xwt_C Thyrotropin receptor; s 99.4 1.4E-13 4.7E-18 106.3 4.8 109 13-122 29-142 (239)
86 2z63_A TOLL-like receptor 4, v 99.4 5.9E-13 2E-17 114.6 9.2 110 12-121 25-135 (570)
87 4eco_A Uncharacterized protein 99.4 2.7E-13 9.2E-18 118.9 7.1 109 12-121 203-341 (636)
88 2z7x_B TOLL-like receptor 1, v 99.4 3.2E-13 1.1E-17 115.3 7.3 106 13-121 19-126 (520)
89 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 6.6E-13 2.2E-17 114.6 8.7 108 12-122 49-158 (562)
90 3o53_A Protein LRIM1, AGAP0063 99.4 4E-13 1.4E-17 108.1 6.7 112 12-126 141-253 (317)
91 1ziw_A TOLL-like receptor 3; i 99.4 2.1E-12 7.1E-17 113.6 11.8 108 13-120 47-155 (680)
92 1wwl_A Monocyte differentiatio 99.4 1.2E-13 4.3E-18 110.8 3.2 87 14-101 94-187 (312)
93 2ft3_A Biglycan; proteoglycan, 99.4 1.4E-12 4.7E-17 105.4 9.1 85 13-100 52-136 (332)
94 4ecn_A Leucine-rich repeat pro 99.4 3.3E-12 1.1E-16 115.4 11.9 108 12-122 694-818 (876)
95 4fmz_A Internalin; leucine ric 99.4 2E-12 7E-17 104.8 9.6 107 11-123 217-324 (347)
96 1wwl_A Monocyte differentiatio 99.4 1.2E-12 3.9E-17 105.1 7.3 106 15-121 149-264 (312)
97 2z80_A TOLL-like receptor 2, v 99.4 1E-13 3.5E-18 113.0 1.1 115 12-127 146-318 (353)
98 1h6t_A Internalin B; cell adhe 99.4 2.8E-12 9.4E-17 102.1 9.4 103 11-120 86-188 (291)
99 1xku_A Decorin; proteoglycan, 99.3 6.2E-12 2.1E-16 101.4 11.2 109 11-122 141-252 (330)
100 4b8c_D Glucose-repressible alc 99.3 5.1E-13 1.7E-17 118.8 5.1 89 13-104 245-333 (727)
101 1h6u_A Internalin H; cell adhe 99.3 3.6E-12 1.2E-16 102.2 9.1 83 12-100 104-186 (308)
102 4glp_A Monocyte differentiatio 99.3 1.6E-12 5.4E-17 104.2 6.9 108 12-122 166-284 (310)
103 1xeu_A Internalin C; cellular 99.3 7.5E-12 2.6E-16 98.2 10.6 101 12-120 60-160 (263)
104 1h6t_A Internalin B; cell adhe 99.3 9.1E-12 3.1E-16 99.1 10.8 105 11-122 64-168 (291)
105 4ecn_A Leucine-rich repeat pro 99.3 9.8E-13 3.4E-17 118.8 5.4 107 13-121 489-606 (876)
106 1xeu_A Internalin C; cellular 99.3 8.5E-12 2.9E-16 97.9 10.0 110 8-125 78-187 (263)
107 3oja_A Leucine-rich immune mol 99.3 7.9E-13 2.7E-17 112.5 3.9 107 14-122 119-226 (487)
108 4glp_A Monocyte differentiatio 99.3 3.1E-12 1.1E-16 102.4 7.0 108 14-121 90-208 (310)
109 1h6u_A Internalin H; cell adhe 99.3 1.1E-11 3.7E-16 99.4 9.9 104 11-121 81-184 (308)
110 1m9s_A Internalin B; cell inva 99.3 1.2E-11 4E-16 107.9 9.5 101 14-121 108-208 (605)
111 2xwt_C Thyrotropin receptor; s 99.3 4.4E-12 1.5E-16 97.8 5.2 108 12-121 52-167 (239)
112 1m9s_A Internalin B; cell inva 99.2 3.7E-11 1.3E-15 104.8 11.4 101 14-121 86-186 (605)
113 1o6v_A Internalin A; bacterial 99.2 2.4E-11 8.2E-16 102.5 9.0 83 12-100 262-344 (466)
114 3o53_A Protein LRIM1, AGAP0063 99.2 3.9E-12 1.3E-16 102.3 3.8 106 14-121 119-225 (317)
115 1o6v_A Internalin A; bacterial 99.2 6.5E-11 2.2E-15 99.9 10.7 104 11-121 239-342 (466)
116 4fmz_A Internalin; leucine ric 99.2 1.4E-10 4.9E-15 93.8 11.4 81 12-98 63-143 (347)
117 4ay9_X Follicle-stimulating ho 99.1 2.4E-11 8.3E-16 99.0 4.7 95 10-104 25-121 (350)
118 3bz5_A Internalin-J, INLJ; leu 99.1 3.5E-10 1.2E-14 95.4 11.1 81 13-101 40-120 (457)
119 3cvr_A Invasion plasmid antige 99.1 2.4E-10 8.2E-15 98.9 10.3 52 62-120 139-190 (571)
120 3bz5_A Internalin-J, INLJ; leu 99.1 5.4E-10 1.8E-14 94.3 12.0 99 11-120 60-158 (457)
121 1ds9_A Outer arm dynein; leuci 99.1 2.5E-13 8.6E-18 102.1 -7.6 110 11-125 44-155 (198)
122 3cvr_A Invasion plasmid antige 99.1 2.7E-10 9.1E-15 98.6 10.2 92 14-120 79-170 (571)
123 3goz_A Leucine-rich repeat-con 99.0 3.1E-11 1.1E-15 98.7 0.9 95 9-103 16-125 (362)
124 1jl5_A Outer protein YOPM; leu 99.0 1.8E-09 6.1E-14 91.1 10.0 81 13-101 129-209 (454)
125 1jl5_A Outer protein YOPM; leu 99.0 4.8E-10 1.6E-14 94.5 6.0 96 15-123 297-409 (454)
126 1ds9_A Outer arm dynein; leuci 99.0 1.1E-12 3.8E-17 98.5 -9.4 107 11-121 14-126 (198)
127 3g06_A SSPH2 (leucine-rich rep 99.0 2.2E-09 7.4E-14 93.9 9.8 75 39-122 221-296 (622)
128 2ast_B S-phase kinase-associat 99.0 3E-11 1E-15 97.4 -1.9 84 14-97 117-205 (336)
129 2ca6_A RAN GTPase-activating p 98.9 6.8E-11 2.3E-15 97.3 -0.3 111 13-123 185-316 (386)
130 3g06_A SSPH2 (leucine-rich rep 98.9 1.1E-09 3.8E-14 95.7 6.8 84 13-105 219-302 (622)
131 2ast_B S-phase kinase-associat 98.9 4.3E-10 1.5E-14 90.5 2.7 108 14-121 141-258 (336)
132 2ca6_A RAN GTPase-activating p 98.9 3E-10 1E-14 93.5 0.6 93 12-104 213-320 (386)
133 4ay9_X Follicle-stimulating ho 98.8 1.2E-09 3.9E-14 89.0 3.5 110 11-125 150-260 (350)
134 3goz_A Leucine-rich repeat-con 98.8 8E-10 2.7E-14 90.3 2.5 103 19-121 2-120 (362)
135 3rw6_A Nuclear RNA export fact 98.8 4.3E-09 1.5E-13 82.6 5.7 64 38-103 169-236 (267)
136 3rw6_A Nuclear RNA export fact 98.6 2.9E-09 9.9E-14 83.6 -1.0 80 12-93 167-257 (267)
137 1z7x_W Ribonuclease inhibitor; 98.6 4.7E-09 1.6E-13 87.9 -0.2 110 13-122 282-410 (461)
138 1z7x_W Ribonuclease inhibitor; 98.6 1.5E-09 5.1E-14 90.9 -4.1 108 14-121 255-381 (461)
139 3sb4_A Hypothetical leucine ri 98.5 1.5E-07 5.2E-12 75.7 7.1 87 13-101 224-311 (329)
140 3un9_A NLR family member X1; l 98.4 3.1E-08 1.1E-12 81.4 0.5 111 11-121 122-250 (372)
141 3un9_A NLR family member X1; l 98.3 6.3E-08 2.1E-12 79.6 0.4 107 15-121 101-222 (372)
142 1io0_A Tropomodulin; LRR prote 98.1 4E-07 1.4E-11 67.4 1.0 89 13-101 34-137 (185)
143 3ogk_B Coronatine-insensitive 98.1 2.7E-07 9.2E-12 79.6 -0.5 86 14-99 402-500 (592)
144 1io0_A Tropomodulin; LRR prote 98.1 7.6E-07 2.6E-11 65.9 1.9 67 34-100 31-106 (185)
145 3sb4_A Hypothetical leucine ri 98.0 5.6E-06 1.9E-10 66.4 5.2 82 11-94 246-328 (329)
146 3e4g_A ATP synthase subunit S, 97.9 1.1E-06 3.8E-11 64.5 -0.0 83 16-98 62-150 (176)
147 2p1m_B Transport inhibitor res 97.9 9.3E-07 3.2E-11 76.2 -1.7 110 12-122 394-518 (594)
148 3ogk_B Coronatine-insensitive 97.9 4.3E-06 1.5E-10 72.0 2.0 83 13-96 162-252 (592)
149 2p1m_B Transport inhibitor res 97.7 4.3E-06 1.5E-10 72.0 -0.0 86 13-98 103-195 (594)
150 3rfe_A Platelet glycoprotein I 97.5 6.8E-05 2.3E-09 52.1 3.9 58 18-77 11-69 (130)
151 3rfe_A Platelet glycoprotein I 97.5 0.00023 7.8E-09 49.4 6.3 58 42-101 11-69 (130)
152 2ra8_A Uncharacterized protein 97.4 2.3E-05 8E-10 64.0 -0.1 108 14-121 192-318 (362)
153 2ra8_A Uncharacterized protein 97.4 1.8E-05 6.1E-10 64.7 -0.9 106 12-120 169-289 (362)
154 4fdw_A Leucine rich hypothetic 97.3 0.0004 1.4E-08 57.4 6.5 101 15-120 248-355 (401)
155 4fdw_A Leucine rich hypothetic 97.2 0.00072 2.4E-08 55.9 6.9 104 11-119 222-332 (401)
156 3e4g_A ATP synthase subunit S, 96.6 0.00034 1.2E-08 51.2 -0.1 82 39-120 61-149 (176)
157 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0012 4.2E-08 49.1 2.0 83 15-97 41-136 (197)
158 4fs7_A Uncharacterized protein 96.1 0.006 2E-07 49.9 4.8 62 34-97 292-353 (394)
159 4gt6_A Cell surface protein; l 96.0 0.017 5.9E-07 47.1 7.3 104 12-120 262-367 (394)
160 4h09_A Hypothetical leucine ri 95.8 0.016 5.4E-07 46.9 6.2 83 13-97 238-320 (379)
161 1pgv_A TMD-1, tropomodulin TMD 95.8 0.0019 6.4E-08 48.1 0.4 86 14-99 69-169 (197)
162 4gt6_A Cell surface protein; l 95.4 0.05 1.7E-06 44.3 7.7 80 15-97 288-367 (394)
163 4h09_A Hypothetical leucine ri 94.4 0.07 2.4E-06 43.0 6.1 85 13-100 215-299 (379)
164 2ks1_B Epidermal growth factor 94.3 0.016 5.4E-07 31.9 1.3 21 157-177 13-33 (44)
165 4fs7_A Uncharacterized protein 94.1 0.034 1.2E-06 45.3 3.6 84 11-97 293-376 (394)
166 2l2t_A Receptor tyrosine-prote 92.7 0.017 5.7E-07 31.7 -0.4 21 157-177 12-32 (44)
167 2jwa_A Receptor tyrosine-prote 89.0 0.086 2.9E-06 28.8 0.2 17 162-178 18-34 (44)
168 2k1k_A Ephrin type-A receptor 83.8 0.35 1.2E-05 25.5 0.9 6 160-165 15-20 (38)
169 2k9y_A Ephrin type-A receptor 83.1 0.36 1.2E-05 25.8 0.8 13 157-169 15-27 (41)
170 2l2t_A Receptor tyrosine-prote 78.7 0.41 1.4E-05 26.2 -0.0 8 170-177 28-35 (44)
171 2l9u_A Receptor tyrosine-prote 70.8 3.3 0.00011 21.0 2.2 17 165-181 17-33 (40)
172 2knc_B Integrin beta-3; transm 68.5 2 6.7E-05 26.7 1.3 19 157-175 13-31 (79)
173 2knc_A Integrin alpha-IIB; tra 64.0 4.1 0.00014 23.2 1.9 22 154-175 12-33 (54)
174 1iij_A ERBB-2 receptor protein 60.4 1.4 4.9E-05 22.7 -0.4 8 165-172 17-24 (35)
175 2l8s_A Integrin alpha-1; trans 59.7 6.3 0.00021 22.4 2.2 21 155-175 10-30 (54)
176 2klu_A T-cell surface glycopro 57.8 1.5 5.2E-05 25.9 -0.6 10 158-167 13-22 (70)
177 2lz0_A Uncharacterized protein 57.5 26 0.0009 22.3 5.3 47 25-72 6-52 (100)
178 2k1a_A Integrin alpha-IIB; sin 46.8 9.2 0.00031 20.5 1.4 22 154-175 10-31 (42)
179 2lz0_A Uncharacterized protein 44.5 37 0.0012 21.6 4.4 46 50-96 7-52 (100)
180 2k9j_B Integrin beta-3; transm 44.3 12 0.00041 20.1 1.6 7 158-164 13-19 (43)
181 2jp3_A FXYD domain-containing 43.5 23 0.00077 21.0 2.8 17 160-176 21-37 (67)
182 2zxe_G FXYD10, phospholemman-l 33.7 30 0.001 20.8 2.3 18 160-177 23-40 (74)
183 4ev6_A Magnesium transport pro 33.0 17 0.00059 28.7 1.6 16 167-182 323-338 (339)
184 2jo1_A Phospholemman; FXYD1, N 32.2 34 0.0012 20.4 2.4 16 160-175 20-35 (72)
185 2l34_A TYRO protein tyrosine k 31.0 19 0.00065 18.1 1.0 10 159-168 10-19 (33)
186 2iub_A CORA, divalent cation t 28.9 24 0.00083 28.2 1.9 18 165-182 345-362 (363)
187 1q55_A EP-cadherin, C-cadherin 28.3 12 0.00042 33.9 0.0 17 159-175 708-724 (880)
188 3arc_J Photosystem II reaction 21.9 35 0.0012 17.8 1.0 19 157-175 11-29 (40)
189 1pp9_D Cytochrome C-1, cytochr 21.8 46 0.0016 25.1 2.1 19 167-185 212-230 (241)
190 2ifo_A Inovirus; helical virus 21.6 53 0.0018 17.8 1.8 13 163-175 26-38 (46)
191 2yiu_B Cytochrome C1, heme pro 21.1 42 0.0014 25.7 1.7 9 175-183 246-254 (263)
192 3cx5_D Cytochrome C1, heme pro 20.1 65 0.0022 24.4 2.6 20 167-186 216-235 (248)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1.4e-21 Score=174.75 Aligned_cols=125 Identities=42% Similarity=0.680 Sum_probs=117.8
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
..+++|+.|||++|.++|.+|..++++++|+.|+|++|.++|.+|..++++++|+.||+++|.++|.+|..+..+++|++
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCC
Q 046642 92 FDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEA 137 (207)
Q Consensus 92 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~C~~~~~ 137 (207)
|++++|+++|.+|...++.++...+|.|||.+||.|.. .|....+
T Consensus 709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred EECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence 99999999999999999999999999999999999886 8975543
No 2
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=130.43 Aligned_cols=117 Identities=25% Similarity=0.348 Sum_probs=104.5
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..++++++.|++++|.|+ .+|..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+
T Consensus 27 ~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 27 KGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105 (193)
T ss_dssp SCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence 346789999999999999 7889999999999999999999988788899999999999999999988888899999999
Q ss_pred eecCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCCC
Q 046642 91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGPL 128 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~~ 128 (207)
.|++++|.+++..+. ...+..+..+++.+||+.|+|..
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred EEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 999999999965443 34577888999999999998853
No 3
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=2.3e-18 Score=129.36 Aligned_cols=117 Identities=20% Similarity=0.318 Sum_probs=104.4
Q ss_pred hhcccccEEEccCCCCCCCCch-hccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 12 KLSNLITAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
.++.+++.|++++|.|++..+. .|..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|+
T Consensus 26 ~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 4566899999999999966554 489999999999999999988899999999999999999999988888899999999
Q ss_pred eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL 128 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 128 (207)
+|++++|++++..|.. ..+..+..+++.+|++.|+|+.
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999999999887754 4567888999999999998864
No 4
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=131.26 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=102.6
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
+..+++|+.|+|++|.|++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 45688899999999999977777899999999999999999977777899999999999999999988888899999999
Q ss_pred eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL 128 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 128 (207)
.|++++|.+++..|.. ..+..+..+++.+|++.|+|+.
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 9999999999776654 4567788889999999998764
No 5
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=4e-18 Score=130.73 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=92.9
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
+..+++|+.|+|++|.|++..|..|.++++|+.|+|++|.++...+..|..+++|+.|++++|.+++..|..|..+++|+
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 34567788888888888877788888888888888888888855555577888888888888888877778888888888
Q ss_pred eecCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCCC
Q 046642 91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGPL 128 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~~ 128 (207)
.|++++|.+++..+. ...+..+..+++.+|++.|+|..
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 888888888865554 34466778888899999887753
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=1.2e-18 Score=157.35 Aligned_cols=92 Identities=30% Similarity=0.380 Sum_probs=67.9
Q ss_pred hhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCCCCCCCCC
Q 046642 33 TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTF 112 (207)
Q Consensus 33 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l 112 (207)
..|.++++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..|..+. ++|+.|++++|++++..|.. +..+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L 549 (844)
T 3j0a_A 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSL 549 (844)
T ss_dssp SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSC
T ss_pred hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCc
Confidence 3456667777777777777766666777777788888888877765555444 67778888888887766653 4577
Q ss_pred CcccccCCCCCCCCCC
Q 046642 113 GKSSFDGNPGLCGGPL 128 (207)
Q Consensus 113 ~~~~~~~n~~~c~~~~ 128 (207)
..+++.+||+.|+|+.
T Consensus 550 ~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 550 SVLDITHNKFICECEL 565 (844)
T ss_dssp CEEEEEEECCCCSSSC
T ss_pred CEEEecCCCccccccc
Confidence 8889999999998864
No 7
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=3.6e-17 Score=120.99 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=102.0
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..++++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 24 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence 45678999999999999977777789999999999999999966667789999999999999999977777789999999
Q ss_pred eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 127 (207)
.|++++|.+++..+.. ..+..+..+++.+|++.|.++
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999999655443 456788899999999998774
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=7.4e-17 Score=124.35 Aligned_cols=115 Identities=19% Similarity=0.231 Sum_probs=74.6
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
..+++|+.|+|++|.|+...+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.++ .+|..+..+++|+.
T Consensus 61 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 139 (229)
T 3e6j_A 61 DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH 139 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE
T ss_pred hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE
Confidence 34556666666666666444445566666666666666666554555666677777777777776 56666667777777
Q ss_pred ecCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642 92 FDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 92 l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 127 (207)
|++++|.+++..+. ...+..+..+.+.+||+.|.|+
T Consensus 140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 77777777744332 2345666777788888888764
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=1.3e-17 Score=134.32 Aligned_cols=114 Identities=30% Similarity=0.510 Sum_probs=102.5
Q ss_pred ccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCC
Q 046642 17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSD 96 (207)
Q Consensus 17 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~ 96 (207)
|+.|++++|.+++..|..|..+++|+.|++++|.+++.+|. +..+++|+.|++++|.+++.+|..+..+++|+.|++++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 88888888888888888888999999999999999866655 88899999999999999999999999999999999999
Q ss_pred CcCcCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 046642 97 NLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKC 132 (207)
Q Consensus 97 N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~C 132 (207)
|+++|.+|....++.+..+++.+|+++|+.|.. .|
T Consensus 278 N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp SEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999888889999999999999998765 46
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=3.5e-16 Score=118.51 Aligned_cols=116 Identities=22% Similarity=0.219 Sum_probs=82.7
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 44667777777777777555555677777777777777777555555677777888888888777665556777778888
Q ss_pred ecCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642 92 FDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 92 l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 127 (207)
|++++|.+++..+. ...+..+..+++.+|++.|.++
T Consensus 129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred EECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 88888877754443 2445677777888888887765
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=2.5e-16 Score=125.53 Aligned_cols=114 Identities=24% Similarity=0.247 Sum_probs=81.4
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
.+++|+.|++++|.|++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus 98 ~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177 (290)
T ss_dssp TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence 45667777777777776656667777777777777777775555666777777777777777775544556677778888
Q ss_pred cCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642 93 DVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 93 ~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 127 (207)
++++|.++ .+|. ......+..+.+.+||+.|+|.
T Consensus 178 ~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred ECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 88888777 3443 3344567778889999999874
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=3.9e-16 Score=121.69 Aligned_cols=87 Identities=23% Similarity=0.226 Sum_probs=42.0
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ 93 (207)
+++|++|+|++|.|++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 44555555555555544444455555555555555555433334444444444444444444433333344444444444
Q ss_pred CCCCcCc
Q 046642 94 VSDNLLT 100 (207)
Q Consensus 94 l~~N~l~ 100 (207)
+++|.++
T Consensus 138 Ls~N~l~ 144 (251)
T 3m19_A 138 LNTNQLQ 144 (251)
T ss_dssp CCSSCCC
T ss_pred CcCCcCC
Confidence 4444444
No 13
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.68 E-value=3.5e-16 Score=115.25 Aligned_cols=108 Identities=23% Similarity=0.240 Sum_probs=70.7
Q ss_pred ccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCC
Q 046642 17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSD 96 (207)
Q Consensus 17 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~ 96 (207)
.+.+++++|.++ .+|..+ .++|+.|+|++|.+++..|..|..+++|+.|++++|.|++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 356777777776 455544 26677777777777766666677777777777777777755555566777777777777
Q ss_pred CcCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642 97 NLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 97 N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 127 (207)
|++++..+. ...+..+..+++.+|++.|.|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 777754443 2345566666777777777653
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=5e-16 Score=122.52 Aligned_cols=115 Identities=22% Similarity=0.232 Sum_probs=66.1
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
.+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 34555555665555554444445555666666666666654444445556666666666666665544455566666666
Q ss_pred cCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCC
Q 046642 93 DVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 93 ~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 127 (207)
++++|.+++..|.. ..+..+..+++.+|++.|.|+
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 66666666544432 345556666666666666654
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=7e-16 Score=121.49 Aligned_cols=116 Identities=20% Similarity=0.209 Sum_probs=71.8
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 34455666666666666555555566666666666666666444444666666677777777666555555666677777
Q ss_pred ecCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642 92 FDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 92 l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 127 (207)
|++++|.+++..+. ...+..+..+++.+||+.|+|.
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 77777777643332 2335566667777777777664
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=1.6e-16 Score=137.97 Aligned_cols=119 Identities=20% Similarity=0.242 Sum_probs=104.5
Q ss_pred hhhhcccccEEEccCCCCC-CCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCc
Q 046642 10 YEKLSNLITAIILSNNSFV-GEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTS 88 (207)
Q Consensus 10 ~~~~l~~L~~L~Ls~n~i~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~ 88 (207)
....++.++.|++++|.+. +..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..|..+++
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence 3456788999999999754 457788999999999999999999888999999999999999999999888889999999
Q ss_pred cceecCCCCcCcCCCCCCC-CC-CCCCcccccCCCCCCCCCC
Q 046642 89 LEFFDVSDNLLTGPIPRGK-QF-DTFGKSSFDGNPGLCGGPL 128 (207)
Q Consensus 89 L~~l~l~~N~l~~~~p~~~-~~-~~l~~~~~~~n~~~c~~~~ 128 (207)
|+.|++++|++++..|... .+ ..+..+++++||+.|+|..
T Consensus 544 L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 9999999999998877653 23 5688899999999999953
No 17
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=3.5e-16 Score=117.37 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=88.6
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
+..+++|++|+|++|.|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|.+++..|..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 56788999999999999988899999999999999999999988888899999999999999999998899999999999
Q ss_pred eecCCCCcCcCCCC
Q 046642 91 FFDVSDNLLTGPIP 104 (207)
Q Consensus 91 ~l~l~~N~l~~~~p 104 (207)
.|++++|++++..+
T Consensus 130 ~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 130 SLNLASNPFNCNCH 143 (192)
T ss_dssp EEECTTCCBCCSGG
T ss_pred EEEeCCCCccCcCc
Confidence 99999999998765
No 18
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.65 E-value=1.2e-15 Score=112.92 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=69.7
Q ss_pred cEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCC
Q 046642 18 TAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDN 97 (207)
Q Consensus 18 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N 97 (207)
+.+++++|.++ .+|..+. ++|+.|+|++|.+++..|..|..+++|+.|+|++|.|++..+..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56677777775 5565543 66777777777777666666777777777777777777554445666777777777777
Q ss_pred cCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642 98 LLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 98 ~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 127 (207)
.+++..+. ...+..+..+++.+|++.|.|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 77744443 3345566666777777766553
No 19
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.64 E-value=8.4e-16 Score=113.20 Aligned_cols=94 Identities=21% Similarity=0.222 Sum_probs=85.7
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..++++++.|+|++|.|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.|++..+..|..+++|+
T Consensus 26 ~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 26 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 34678999999999999988899999999999999999999977777789999999999999999977777899999999
Q ss_pred eecCCCCcCcCCCC
Q 046642 91 FFDVSDNLLTGPIP 104 (207)
Q Consensus 91 ~l~l~~N~l~~~~p 104 (207)
.|++++|++++..+
T Consensus 106 ~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 106 HIWLLNNPWDCACS 119 (170)
T ss_dssp EEECCSSCBCTTBG
T ss_pred EEEeCCCCCCCCch
Confidence 99999999997665
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=7.7e-16 Score=129.29 Aligned_cols=118 Identities=22% Similarity=0.179 Sum_probs=101.8
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
...+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 34567899999999999987788899999999999999999877788899999999999999999988788899999999
Q ss_pred eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL 128 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 128 (207)
+|++++|++++..+.. ..+..+..+++.+|++.|+|+.
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999999999654433 4677888999999999999873
No 21
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=2.5e-15 Score=115.79 Aligned_cols=111 Identities=23% Similarity=0.272 Sum_probs=97.2
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..++++|+.|+|++|.|++..|..|..+++|+.|+|++|.++...+..|..+++|+.|++++|.+++..+..|..+++|+
T Consensus 36 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 36 AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence 35678999999999999988899999999999999999999866667789999999999999999977777789999999
Q ss_pred eecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG 122 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 122 (207)
.|++++|.++ .+|.. ..+..+..+++.+|..
T Consensus 116 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp EEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred eEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence 9999999999 55543 4567788888888854
No 22
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=1.7e-15 Score=116.06 Aligned_cols=112 Identities=23% Similarity=0.262 Sum_probs=98.3
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..++++++.|++++|.|++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|++++|.++...+..|..+++|+
T Consensus 28 ~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 28 TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ 107 (220)
T ss_dssp SSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCC
Confidence 34667899999999999977777899999999999999999988899999999999999999999966666789999999
Q ss_pred eecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG 122 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 122 (207)
.|++++|.+++..|.. ..+..+..+++.+|..
T Consensus 108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 9999999999776653 4567788888888864
No 23
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.62 E-value=2.3e-15 Score=111.34 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=84.0
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..++++|+.|+|++|.|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.|++..+..|..+++|+
T Consensus 29 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 29 AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCC
Confidence 34678999999999999988899999999999999999999966666689999999999999999966666699999999
Q ss_pred eecCCCCcCcCCCC
Q 046642 91 FFDVSDNLLTGPIP 104 (207)
Q Consensus 91 ~l~l~~N~l~~~~p 104 (207)
.|++++|++.+..+
T Consensus 109 ~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 109 HIYLYNNPWDCECR 122 (174)
T ss_dssp EEECCSSCBCTTBG
T ss_pred EEEeCCCCcccccc
Confidence 99999999986544
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.62 E-value=1.1e-15 Score=132.68 Aligned_cols=118 Identities=18% Similarity=0.054 Sum_probs=97.5
Q ss_pred cchhhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhh
Q 046642 5 GTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLS 84 (207)
Q Consensus 5 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~ 84 (207)
+.+..+..++.++++|||++|.|++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|.
T Consensus 42 ~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 42 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp CCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred CcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 44444556778899999999999977778899999999999999999977777899999999999999999976667889
Q ss_pred cCCccceecCCCCcCcCCCCC-CCCCCCCCcccccCCCC
Q 046642 85 ELTSLEFFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 85 ~l~~L~~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~ 122 (207)
++++|++|++++|++++..+. ...+..++.+++.+|..
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 999999999999999865543 34566777777777753
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=9.1e-16 Score=121.56 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=48.2
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
.+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE
Confidence 34555666666666655555555555555556555555554444445555555555555555553333345555555555
Q ss_pred cCCCCcCcCC
Q 046642 93 DVSDNLLTGP 102 (207)
Q Consensus 93 ~l~~N~l~~~ 102 (207)
++++|.+++.
T Consensus 183 ~l~~n~l~~~ 192 (285)
T 1ozn_A 183 LLHQNRVAHV 192 (285)
T ss_dssp ECCSSCCCEE
T ss_pred ECCCCccccc
Confidence 5555555443
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.60 E-value=2.9e-15 Score=125.78 Aligned_cols=116 Identities=21% Similarity=0.205 Sum_probs=100.5
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
+..+++|+.|++++|.++ .+| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+
T Consensus 181 ~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp TTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred hhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 445788999999999998 555 478899999999999999988889999999999999999999988888899999999
Q ss_pred eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL 128 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 128 (207)
.|++++|++++..+.. ..+..+..+++.+||+.|+|..
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 9999999999655443 4567888999999999999954
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=9.5e-15 Score=113.79 Aligned_cols=112 Identities=17% Similarity=0.163 Sum_probs=98.8
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..++++++.|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+
T Consensus 31 ~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 31 SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp SCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 34678899999999999988888999999999999999999988888899999999999999999977778899999999
Q ss_pred eecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG 122 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 122 (207)
.|++++|.+++..+.. ..+..+..+++.+|..
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCcC
Confidence 9999999999655543 4567788888888854
No 28
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.59 E-value=4.3e-15 Score=120.81 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=85.2
Q ss_pred EEEccCC-CCCCCCchhccCCCCCCEEECcC-CcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCC
Q 046642 19 AIILSNN-SFVGEIPTSIANLKGLRNLDLSN-NNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSD 96 (207)
Q Consensus 19 ~L~Ls~n-~i~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~ 96 (207)
.++.+++ .++ .+|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|.|++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4678887 787 5777 88888888889886 888877777888888888899988888887788888888888889988
Q ss_pred CcCcCCCCCCCCCCCCCcccccCCCCCCCCC
Q 046642 97 NLLTGPIPRGKQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 97 N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 127 (207)
|+|++..+.......+..+.+.+|++.|+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 8888655444333347778888888888874
No 29
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.5e-14 Score=109.44 Aligned_cols=112 Identities=21% Similarity=0.167 Sum_probs=96.6
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..+++++++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+
T Consensus 24 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 45678899999999999977777789999999999999999966666789999999999999999977667789999999
Q ss_pred eecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG 122 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 122 (207)
.|++++|.+++..+.. ..+..+..+++.+|..
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 9999999999665543 4567888888888854
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=2.2e-14 Score=113.02 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=60.8
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++
T Consensus 60 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 345566666666666653 2 24556666666666666666444445566666666666666666554445556666666
Q ss_pred ecCCCCcCcCCCCCC-CCCCCCCcccccCCC
Q 046642 92 FDVSDNLLTGPIPRG-KQFDTFGKSSFDGNP 121 (207)
Q Consensus 92 l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~ 121 (207)
|++++|.+++..+.. ..+..+..+++.+|.
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCC
Confidence 666666665433332 234455555555553
No 31
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=9.6e-15 Score=111.83 Aligned_cols=111 Identities=19% Similarity=0.181 Sum_probs=96.7
Q ss_pred hhcccccEEEccCCCCCCCCc-hhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 12 KLSNLITAIILSNNSFVGEIP-TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
.++..++.|+|++|.|++..| ..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+
T Consensus 29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK 108 (220)
T ss_dssp CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCC
T ss_pred CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCC
Confidence 456788999999999997644 4588999999999999999977777999999999999999999988888899999999
Q ss_pred eecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG 122 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 122 (207)
.|++++|.+++..|.. ..+..+..+++.+|..
T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred EEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 9999999999876654 4567788888888854
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.57 E-value=2.5e-15 Score=130.50 Aligned_cols=116 Identities=21% Similarity=0.170 Sum_probs=94.9
Q ss_pred hhcccccEEEccCCCCCC-CCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 12 KLSNLITAIILSNNSFVG-EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..+++|+.|++++|.+++ ..|..|..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+
T Consensus 445 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 456778888888888876 3677788888888888888888877788888899999999999999887788889999999
Q ss_pred eecCCCCcCcCCCCCC-CCCC-CCCcccccCCCCCCCCCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFD-TFGKSSFDGNPGLCGGPL 128 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~-~l~~~~~~~n~~~c~~~~ 128 (207)
.|++++|+++ .+|.. ..+. .+..+++.+||+.|+|+.
T Consensus 525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999988 45543 3343 478889999999999875
No 33
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.57 E-value=6.4e-15 Score=124.06 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=100.9
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
+..+++|+.|++++|.+++ +| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|+
T Consensus 192 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 4467889999999999984 44 478899999999999999988899999999999999999999988888999999999
Q ss_pred eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL 128 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 128 (207)
.|++++|++++..+.. ..+..+..+++.+||+.|+|..
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 9999999999655443 3567788999999999999964
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.57 E-value=3.8e-15 Score=119.03 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=63.8
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCC-CCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG-RIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..+++|++|++++|.+++..+..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|.+++..|..+..+++|+
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 345566666666666665555556666666666666666653 3555566666666666666666655555566666666
Q ss_pred eecCCCCcCcCCCCC-CCCCCCCCcccccCCC
Q 046642 91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~ 121 (207)
.|++++|.+++..+. ...+..+..+++.+|.
T Consensus 203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 666666666543331 1233445555555554
No 35
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=7.7e-15 Score=105.33 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=94.0
Q ss_pred hhhcccccEEEccCCCCC-CCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642 11 EKLSNLITAIILSNNSFV-GEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 89 (207)
...+++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|
T Consensus 13 ~~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 13 NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp TCCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred cCCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 345688999999999998 78898899999999999999999855 788999999999999999997789888889999
Q ss_pred ceecCCCCcCcCCC--CCCCCCCCCCcccccCCC
Q 046642 90 EFFDVSDNLLTGPI--PRGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 90 ~~l~l~~N~l~~~~--p~~~~~~~l~~~~~~~n~ 121 (207)
+.|++++|.+++.. +....++.+..+++.+|+
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 99999999998632 334456677888888875
No 36
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.3e-14 Score=109.09 Aligned_cols=109 Identities=18% Similarity=0.193 Sum_probs=80.4
Q ss_pred hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642 10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89 (207)
Q Consensus 10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 89 (207)
....+++|++|++++|.++ .+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 61 ~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 3455677888888888665 23467778888888888888876667778888888888888888886677778888888
Q ss_pred ceecCCCCc-CcCCCCCCCCCCCCCcccccCCC
Q 046642 90 EFFDVSDNL-LTGPIPRGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 90 ~~l~l~~N~-l~~~~p~~~~~~~l~~~~~~~n~ 121 (207)
+.|++++|. ++ .+|....++.+..+++.+|.
T Consensus 139 ~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 139 NSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CEEECCSCTBCC-CCGGGGGCSSCCEEECTTBC
T ss_pred CEEEccCCCCcc-ccHhhcCCCCCCEEECCCCC
Confidence 888888887 44 55555556667777777664
No 37
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=1.1e-14 Score=106.48 Aligned_cols=109 Identities=20% Similarity=0.242 Sum_probs=90.3
Q ss_pred hhcccccEEEccCCCCC-CCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 12 KLSNLITAIILSNNSFV-GEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..+++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 45678999999999998 67888888899999999999999854 7788899999999999999977888888899999
Q ss_pred eecCCCCcCcCCC--CCCCCCCCCCcccccCCCC
Q 046642 91 FFDVSDNLLTGPI--PRGKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 91 ~l~l~~N~l~~~~--p~~~~~~~l~~~~~~~n~~ 122 (207)
.|++++|.+++.. +....+..+..+++.+|+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 9999999998632 3345566778888888754
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=125.08 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=103.5
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCC-CCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQ-GRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 89 (207)
+..+++|+.|++++|.+++..|..|..+++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 456788999999999999888888999999999999999987 5788899999999999999999998888899999999
Q ss_pred ceecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642 90 EFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL 128 (207)
Q Consensus 90 ~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 128 (207)
+.|++++|++++..|.. ..+..+..+++.+|++.|+|+.
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999776653 4677888899999999998764
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=4.1e-14 Score=112.73 Aligned_cols=108 Identities=22% Similarity=0.215 Sum_probs=61.0
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
.+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..+..|..+++|+.|
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 3445555555555555 455555566666666666666664444556666666666666666665444455566666666
Q ss_pred cCCCCcCcCCCCCC-CCCCCCCcccccCCC
Q 046642 93 DVSDNLLTGPIPRG-KQFDTFGKSSFDGNP 121 (207)
Q Consensus 93 ~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~ 121 (207)
++++|++++..+.. ..+..+..+++.+|.
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence 66666666322222 234455555555554
No 40
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=4.2e-14 Score=106.16 Aligned_cols=94 Identities=24% Similarity=0.216 Sum_probs=85.3
Q ss_pred hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642 10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89 (207)
Q Consensus 10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 89 (207)
.+..+++|+.|+|++|.|++..+..|.++++|+.|+|++|.+++..|..|..+++|+.|++++|.++...+..|..+++|
T Consensus 49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (193)
T 2wfh_A 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128 (193)
T ss_dssp GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc
Confidence 34567899999999999998888889999999999999999998888899999999999999999997666679999999
Q ss_pred ceecCCCCcCcCCC
Q 046642 90 EFFDVSDNLLTGPI 103 (207)
Q Consensus 90 ~~l~l~~N~l~~~~ 103 (207)
+.|++++|++.+..
T Consensus 129 ~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 129 SHLAIGANPLYCDC 142 (193)
T ss_dssp CEEECCSSCEECSG
T ss_pred cEEEeCCCCeecCC
Confidence 99999999998644
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.53 E-value=4.7e-15 Score=119.29 Aligned_cols=109 Identities=30% Similarity=0.505 Sum_probs=69.4
Q ss_pred hhcccccEEEccC-CCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 12 KLSNLITAIILSN-NSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 12 ~~l~~L~~L~Ls~-n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..+++|++|++++ |.+++.+|..|..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 3456667777773 666666666677777777777777777666666666677777777777776666666666666777
Q ss_pred eecCCCCcCcCCCCCC-CCCC-CCCcccccCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFD-TFGKSSFDGN 120 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~-~l~~~~~~~n 120 (207)
+|++++|.+++.+|.. ..+. .+..+++.+|
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 7777777666555543 1222 3444444444
No 42
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.52 E-value=2.9e-14 Score=127.48 Aligned_cols=116 Identities=30% Similarity=0.391 Sum_probs=82.6
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..++.+++|+.
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 34566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCC
Q 046642 92 FDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 92 l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 127 (207)
|++++|+++|.+|.. ..+..+..+++.+|+..+..|
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 777777777766654 345566777777776655443
No 43
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=5e-14 Score=111.01 Aligned_cols=90 Identities=21% Similarity=0.389 Sum_probs=60.1
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCC-CchhhhcCCccc
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGN-IPQQLSELTSLE 90 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~ 90 (207)
..+++|++|++++|.+++..+..|.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. +|..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred cCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC
Confidence 4456777777777777766666677777777777777777655555566677777777777776642 466666666666
Q ss_pred eecCCCCcCcC
Q 046642 91 FFDVSDNLLTG 101 (207)
Q Consensus 91 ~l~l~~N~l~~ 101 (207)
.|++++|.+++
T Consensus 153 ~L~Ls~N~l~~ 163 (276)
T 2z62_A 153 HLDLSSNKIQS 163 (276)
T ss_dssp EEECCSSCCCE
T ss_pred EEECCCCCCCc
Confidence 66666666654
No 44
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=6.4e-14 Score=103.39 Aligned_cols=94 Identities=23% Similarity=0.180 Sum_probs=83.8
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 127 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127 (177)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC
Confidence 35578999999999999977777789999999999999999977777789999999999999999976666678899999
Q ss_pred eecCCCCcCcCCCC
Q 046642 91 FFDVSDNLLTGPIP 104 (207)
Q Consensus 91 ~l~l~~N~l~~~~p 104 (207)
.|++++|++.+..|
T Consensus 128 ~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 128 KIWLHTNPWDCSCP 141 (177)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEEecCCCeeccCc
Confidence 99999999998765
No 45
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=3.3e-14 Score=116.50 Aligned_cols=87 Identities=23% Similarity=0.272 Sum_probs=42.7
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ 93 (207)
+++|+.|+|++|.|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 34455555555555544444455555555555555555433334444555555555555555444444444445555555
Q ss_pred CCCCcCc
Q 046642 94 VSDNLLT 100 (207)
Q Consensus 94 l~~N~l~ 100 (207)
+++|.++
T Consensus 143 L~~N~l~ 149 (361)
T 2xot_A 143 LSQNQIS 149 (361)
T ss_dssp CCSSCCC
T ss_pred CCCCcCC
Confidence 5555444
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.51 E-value=5.4e-14 Score=113.88 Aligned_cols=108 Identities=19% Similarity=0.272 Sum_probs=63.8
Q ss_pred hcccccEEEccCCCCCCCCchhccC---------CCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhh
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIAN---------LKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQL 83 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~---------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~ 83 (207)
.+++|++|++++|++.+.+|..+.. +++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l 225 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh
Confidence 4556666666666665566655443 666666666666666 55666666666666666666666 344456
Q ss_pred hcCCccceecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642 84 SELTSLEFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG 122 (207)
Q Consensus 84 ~~l~~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 122 (207)
..+++|+.|++++|.+.+.+|.. ..+..+..+++.+|..
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence 66666666666666666555543 3344555555555543
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.50 E-value=2.7e-14 Score=117.91 Aligned_cols=115 Identities=18% Similarity=0.196 Sum_probs=97.8
Q ss_pred hhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCC
Q 046642 8 LEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELT 87 (207)
Q Consensus 8 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~ 87 (207)
......+++|+.|++++|.+++..|..|..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+..++
T Consensus 241 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~ 318 (390)
T 3o6n_A 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318 (390)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccC
Confidence 344566788999999999999888889999999999999999998 56777788999999999999999 6777788899
Q ss_pred ccceecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCC
Q 046642 88 SLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGG 126 (207)
Q Consensus 88 ~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 126 (207)
+|+.|++++|.++.. | ...+..+..+++.+|++.|.+
T Consensus 319 ~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 319 RLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp TCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred cCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchh
Confidence 999999999999854 4 345678888999999998865
No 48
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=4e-14 Score=103.59 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=91.9
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCc-hhhhcCCccc
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP-QQLSELTSLE 90 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~ 90 (207)
..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++..+ ..+..+++|+
T Consensus 46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 5678999999999999965 788999999999999999997788888889999999999999995422 6889999999
Q ss_pred eecCCCCcCcCCCC----CCCCCCCCCcccccCCC
Q 046642 91 FFDVSDNLLTGPIP----RGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 91 ~l~l~~N~l~~~~p----~~~~~~~l~~~~~~~n~ 121 (207)
.|++++|.+++..+ ....++.+..+++.+|.
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 99999999996554 23456777777777764
No 49
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.6e-13 Score=107.90 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=58.2
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
++++++.|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 44556666666666665444456666666666666666653333444556666666666666654444445555555555
Q ss_pred cCCCCcCcCCCCCC-CCCCCCCcccccCC
Q 046642 93 DVSDNLLTGPIPRG-KQFDTFGKSSFDGN 120 (207)
Q Consensus 93 ~l~~N~l~~~~p~~-~~~~~l~~~~~~~n 120 (207)
++++|.+++..+.. ..+..+..+++.+|
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 55555555433322 23344444444444
No 50
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=4.2e-14 Score=115.87 Aligned_cols=112 Identities=21% Similarity=0.173 Sum_probs=97.1
Q ss_pred hhhcccccEEEccCCCCCCCCchhcc-CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIA-NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 89 (207)
..++..++.|+|++|.|++..+..|. .+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|
T Consensus 35 ~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 35 QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp SSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred ccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 35677899999999999977777787 99999999999999997777889999999999999999997777789999999
Q ss_pred ceecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642 90 EFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG 122 (207)
Q Consensus 90 ~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 122 (207)
+.|++++|.+++..|.. ..+..+..+++.+|..
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence 99999999999765543 4567778888888754
No 51
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.50 E-value=1.6e-14 Score=125.38 Aligned_cols=114 Identities=21% Similarity=0.245 Sum_probs=76.0
Q ss_pred hcccccEEEccCCCCCCC---CchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642 13 LSNLITAIILSNNSFVGE---IPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~---~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 89 (207)
.+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 355666666666666541 22445666666666666666666666667777777777777777777777777777777
Q ss_pred ceecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCC
Q 046642 90 EFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 90 ~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 127 (207)
.|++++|.+++..|.. ..+..+..+++.+||+.|+|+
T Consensus 527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred -EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 7777777777555542 334566778888888888775
No 52
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=120.63 Aligned_cols=112 Identities=21% Similarity=0.223 Sum_probs=98.2
Q ss_pred cccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCC
Q 046642 16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVS 95 (207)
Q Consensus 16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~ 95 (207)
+|+.|++++|.++...+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+.|+++
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 78899999999995555678999999999999999997778889999999999999999998889999999999999999
Q ss_pred CCcCcCCCCCC-CCCCCCCcccccCCCCCCCCC
Q 046642 96 DNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 96 ~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 127 (207)
+|.+++..+.. ..+..+..+++.+||+.|+|.
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 99999654432 456678889999999999874
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.49 E-value=1e-13 Score=112.21 Aligned_cols=110 Identities=21% Similarity=0.289 Sum_probs=90.6
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ 93 (207)
+++|++|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 778888999999888 78888888888999999999888 4666788888899999998888888888888888899999
Q ss_pred CCCCcCcCCCCCC-CCCCCCCcccccCCCCCCC
Q 046642 94 VSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCG 125 (207)
Q Consensus 94 l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~ 125 (207)
+++|.+.+.+|.. ..+..+..+++.+|+..-.
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 9888888888854 4566777788888765443
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.49 E-value=3.8e-14 Score=124.69 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=54.6
Q ss_pred cCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCCCC--CCCCCC
Q 046642 36 ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGK--QFDTFG 113 (207)
Q Consensus 36 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~--~~~~l~ 113 (207)
.++++|+.|++++|.++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|... .+..+.
T Consensus 533 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 612 (680)
T 1ziw_A 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence 344444444444444442222345556666666666666664444445566666666666666664443321 356677
Q ss_pred cccccCCCCCCCCCC
Q 046642 114 KSSFDGNPGLCGGPL 128 (207)
Q Consensus 114 ~~~~~~n~~~c~~~~ 128 (207)
.+++.+||+.|+|+.
T Consensus 613 ~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 613 ELDMRFNPFDCTCES 627 (680)
T ss_dssp EEECTTCCCCBCCCC
T ss_pred EEEccCCCcccCCcc
Confidence 888999999999874
No 55
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=116.94 Aligned_cols=112 Identities=27% Similarity=0.361 Sum_probs=78.9
Q ss_pred hhcccccEEEccCCCCCCCCchh-ccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 12 KLSNLITAIILSNNSFVGEIPTS-IANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..+++|++|++++|.+++.+|.. +..+++|+.|++++|.+++..|..+. ++|+.|++++|.++ .+|..+..+++|+
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ 447 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC
Confidence 34566666666666666534443 56666677777777766655555443 67888888888888 6777777888888
Q ss_pred eecCCCCcCcCCCCC--CCCCCCCCcccccCCCCCCCCC
Q 046642 91 FFDVSDNLLTGPIPR--GKQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~--~~~~~~l~~~~~~~n~~~c~~~ 127 (207)
.|++++|+++ .+|. ...+..+..+++.+|++.|+|+
T Consensus 448 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 448 ELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 8888888888 4554 3456677788888888888764
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.48 E-value=1.1e-13 Score=109.07 Aligned_cols=89 Identities=21% Similarity=0.150 Sum_probs=48.9
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
+++++++|++++|.+++..+..|.++++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 34455566666666554444455555556666666555554444455555555555555555554444455555555555
Q ss_pred cCCCCcCcC
Q 046642 93 DVSDNLLTG 101 (207)
Q Consensus 93 ~l~~N~l~~ 101 (207)
++++|.+++
T Consensus 106 ~l~~n~l~~ 114 (276)
T 2z62_A 106 VAVETNLAS 114 (276)
T ss_dssp ECTTSCCCC
T ss_pred ECCCCCccc
Confidence 555555553
No 57
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=8.1e-14 Score=104.68 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=72.7
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
.-+++|+.|++++|.++ .+| .+..+++|+.|++++|.++ .+..+..+++|+.|++++|.+++..|..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44567777777777777 455 5677777777777777665 2346777777777777777777656667777777777
Q ss_pred ecCCCCcCcCCCCC-CCCCCCCCcccccCCC
Q 046642 92 FDVSDNLLTGPIPR-GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 92 l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~ 121 (207)
|++++|.+++..|. ...+..+..+++.+|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 77777777754332 2345566666776665
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.48 E-value=2e-13 Score=108.06 Aligned_cols=108 Identities=21% Similarity=0.273 Sum_probs=58.1
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCc-CCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNN-LQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
.+++|++|++++|.+++..|..|..+++|+.|++++|. +....|..+..+++|+.|++++|.+++..|..+..+++|++
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 34455555555555554445555555555555555554 44333555555555566666665555554555555566666
Q ss_pred ecCCCCcCcCCCCC-CCCCCCCCcccccCC
Q 046642 92 FDVSDNLLTGPIPR-GKQFDTFGKSSFDGN 120 (207)
Q Consensus 92 l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n 120 (207)
|++++|.+++..+. ...+..+..+++.+|
T Consensus 134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcccccCHhHhccCCCccEEECCCC
Confidence 66666655543332 123445555555555
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.48 E-value=1.2e-13 Score=119.11 Aligned_cols=110 Identities=24% Similarity=0.349 Sum_probs=71.5
Q ss_pred cccccEEEccCCCCCCCCch-hccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 14 SNLITAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
+++|+.|++++|.+++.+|. .+..+++|+.|++++|.+++..|..+. ++|+.|++++|.++ .+|..+..+++|+.|
T Consensus 402 l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L 478 (562)
T 3a79_B 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQEL 478 (562)
T ss_dssp CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEE
T ss_pred CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEE
Confidence 44555555555555542332 244455555555555555444443332 57788888888887 677766788889999
Q ss_pred cCCCCcCcCCCCC--CCCCCCCCcccccCCCCCCCCC
Q 046642 93 DVSDNLLTGPIPR--GKQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 93 ~l~~N~l~~~~p~--~~~~~~l~~~~~~~n~~~c~~~ 127 (207)
++++|+++ .+|. ...+..+..+++.+||+.|+|+
T Consensus 479 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp ECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred ECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 99999888 4554 3456677888889999988774
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=112.04 Aligned_cols=110 Identities=22% Similarity=0.232 Sum_probs=92.2
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..+.++|++|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|+
T Consensus 48 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 48 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred ccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 34667899999999999976666899999999999999999977788899999999999999999965555689999999
Q ss_pred eecCCCCcCcCCCCC---CCCCCCCCcccccCCC
Q 046642 91 FFDVSDNLLTGPIPR---GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~---~~~~~~l~~~~~~~n~ 121 (207)
+|++++|.+++ +|. ...+..++.+++.+|.
T Consensus 128 ~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 128 FLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp EEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESS
T ss_pred EEECCCCCCcc-cCchhhhccCCCCcEEECCCCc
Confidence 99999999984 444 3456777778887774
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.47 E-value=1.2e-13 Score=118.48 Aligned_cols=110 Identities=17% Similarity=0.153 Sum_probs=94.8
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++.+++|++
T Consensus 23 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 45678999999999999888889999999999999999999888889999999999999999999887778999999999
Q ss_pred ecCCCCcCcCC-CC-CCCCCCCCCcccccCCC
Q 046642 92 FDVSDNLLTGP-IP-RGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 92 l~l~~N~l~~~-~p-~~~~~~~l~~~~~~~n~ 121 (207)
|++++|.+++. .| ....+..++.+++.+|.
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 99999999852 33 34556677777777775
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.47 E-value=2.2e-13 Score=116.87 Aligned_cols=113 Identities=22% Similarity=0.285 Sum_probs=73.0
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccC------------------CCCCCCCEEecCC
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL------------------SNLTAIESMDLSS 72 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~------------------~~l~~L~~L~ls~ 72 (207)
...+++|++|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+ ..+++|+.|++++
T Consensus 383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR 460 (549)
T ss_dssp GGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred hhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCC
Confidence 345667777777777776 56666666666777777766665 233221 2466677777777
Q ss_pred CCCCCCCchhhhcCCccceecCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642 73 NMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP 127 (207)
Q Consensus 73 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 127 (207)
|.++ .+|. ...+++|+.|++++|++++..|. ...+..+..+++.+|++.|+|+
T Consensus 461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 7776 5554 35567777777777777765554 2455666777777787777765
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.47 E-value=1.6e-13 Score=119.13 Aligned_cols=110 Identities=24% Similarity=0.156 Sum_probs=71.4
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
.+++++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|+.|..+++|++
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 45566777777777777666666777777777777777776555666777777777777777777666666777777777
Q ss_pred ecCCCCcCcCCCCC-CCCCCCCCcccccCCC
Q 046642 92 FDVSDNLLTGPIPR-GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 92 l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~ 121 (207)
|++++|.+++..|. ...+..++.+++.+|.
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 139 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNF 139 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSC
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCc
Confidence 77777766644322 2344455555555554
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=6.3e-14 Score=121.97 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=99.7
Q ss_pred hhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCC
Q 046642 8 LEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELT 87 (207)
Q Consensus 8 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~ 87 (207)
......+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..++
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~ 324 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 324 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCC
Confidence 3445678899999999999998889999999999999999999984 6777888999999999999999 6888889999
Q ss_pred ccceecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCC
Q 046642 88 SLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGG 126 (207)
Q Consensus 88 ~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 126 (207)
+|+.|++++|.+++. | ...+..+..+++.+|++.|.|
T Consensus 325 ~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 325 RLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp TCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChh
Confidence 999999999999854 3 345678888999999998865
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.46 E-value=1.5e-13 Score=115.73 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=77.2
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..++++++.|+|++|.|++..|..|.++++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+
T Consensus 71 ~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 71 QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 34667888899999998877788888888999999999988877778888888899999998888866666788888888
Q ss_pred eecCCCCcCcCCC
Q 046642 91 FFDVSDNLLTGPI 103 (207)
Q Consensus 91 ~l~l~~N~l~~~~ 103 (207)
+|++++|.++...
T Consensus 151 ~L~L~~N~l~~~~ 163 (452)
T 3zyi_A 151 ELWLRNNPIESIP 163 (452)
T ss_dssp EEECCSCCCCEEC
T ss_pred EEECCCCCcceeC
Confidence 8888888887433
No 66
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=6.1e-14 Score=100.59 Aligned_cols=91 Identities=18% Similarity=0.243 Sum_probs=80.9
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCC-CchhhhcCCccc
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGN-IPQQLSELTSLE 90 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~ 90 (207)
..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++. .+..+..+++|+
T Consensus 39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 4578999999999999965 7789999999999999999977888888899999999999999953 347899999999
Q ss_pred eecCCCCcCcCCCC
Q 046642 91 FFDVSDNLLTGPIP 104 (207)
Q Consensus 91 ~l~l~~N~l~~~~p 104 (207)
.|++++|.+++..+
T Consensus 117 ~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 117 SLDLFNCEVTNLND 130 (149)
T ss_dssp EEECTTCGGGGSTT
T ss_pred EEeCcCCcccchHH
Confidence 99999999996544
No 67
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=2.9e-13 Score=117.24 Aligned_cols=102 Identities=21% Similarity=0.276 Sum_probs=86.8
Q ss_pred cccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCC
Q 046642 16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVS 95 (207)
Q Consensus 16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~ 95 (207)
.|+.|+|++|.|++ +|. |+.+++|+.|+|++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 58899999999985 676 889999999999999998 788899999999999999999995 67 78899999999999
Q ss_pred CCcCcCCC-CC-CCCCCCCCcccccCCCC
Q 046642 96 DNLLTGPI-PR-GKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 96 ~N~l~~~~-p~-~~~~~~l~~~~~~~n~~ 122 (207)
+|.+++.. |. ...+..+..+++.+|+.
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 99998774 54 35567788888888864
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.45 E-value=4.1e-13 Score=116.83 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=86.7
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
+..+++|++|+|++|.|++..|..|..+++|+.|+|++|.+++..|..|+.+++|+.|++++|.+++..+..|..+++|+
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 45567888888888888877777888888888888888888877777788888888888888888855555568888888
Q ss_pred eecCCCCcCcCCCCC-CCCCCCCCcccccCCC
Q 046642 91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~ 121 (207)
+|++++|.+++..|. ...+..+..+++.+|.
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 888888888876664 3445666667776664
No 69
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.45 E-value=5.4e-13 Score=110.06 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=86.9
Q ss_pred hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642 10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89 (207)
Q Consensus 10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 89 (207)
++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.++...+..+..+++|
T Consensus 64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 34567888888998888887667788888888999998888887777778888888888888888884444456888888
Q ss_pred ceecCCCCcCcCCCCC-CCCCCCCCcccccCCC
Q 046642 90 EFFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 90 ~~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~ 121 (207)
++|++++|.+++..|. ...+..+..+++.+|.
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence 8888888888866554 2445667777777664
No 70
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.45 E-value=2.7e-13 Score=109.41 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=74.7
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
...+++|+.|++++|.++ .+|..+. ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 167 ~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 243 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243 (330)
T ss_dssp GGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred ccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence 345677778888888777 4555443 6777777777777766667777777777777777777766666677777777
Q ss_pred eecCCCCcCcCCCCC-CCCCCCCCcccccCCCC
Q 046642 91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~ 122 (207)
.|++++|.++ .+|. ...+..+..+++.+|+.
T Consensus 244 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred EEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 7777777777 4443 34455666677776653
No 71
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.45 E-value=4e-13 Score=117.78 Aligned_cols=105 Identities=19% Similarity=0.286 Sum_probs=59.8
Q ss_pred cccEEEccCCCCCCCCchhcc--CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEec------CCCCCCCCCchhhhcCC
Q 046642 16 LITAIILSNNSFVGEIPTSIA--NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL------SSNMLSGNIPQQLSELT 87 (207)
Q Consensus 16 ~L~~L~Ls~n~i~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l------s~N~l~~~~p~~~~~l~ 87 (207)
+|+.|+|++|.++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++ ++|.+.+.+|..+..++
T Consensus 489 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 489 LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp GCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 5555666666655 4555554 55666666666666654 5555556666666666 34555555666666666
Q ss_pred ccceecCCCCcCcCCCCCCCCCCCCCcccccCCCCCC
Q 046642 88 SLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLC 124 (207)
Q Consensus 88 ~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c 124 (207)
+|+.|++++|.+ +.+|.... +.+..+++++|+..|
T Consensus 567 ~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 567 SLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp SCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred CCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence 666666666666 34554422 455555666665554
No 72
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.45 E-value=1.6e-13 Score=119.12 Aligned_cols=111 Identities=16% Similarity=0.056 Sum_probs=76.1
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..++..+++|++++|.|++..|..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+..+++|+
T Consensus 29 ~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 34566777777777777766677777777777777777777766677777777777777777777766677777777777
Q ss_pred eecCCCCcCcCCCCC-CCCCCCCCcccccCCC
Q 046642 91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~ 121 (207)
+|++++|.+++..|. ...+..++.+++.+|.
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~ 140 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCc
Confidence 777777777653222 2334455555555554
No 73
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=115.09 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=51.8
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
++++++.|+|++|.|++..|..|.++++|+.|+|++|.+++..|..|.++++|+.|++++|.++...+..|..+++|+.|
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 44556666666666665555555666666666666666655555555566666666666666554333445555555555
Q ss_pred cCCCCcCcCCC
Q 046642 93 DVSDNLLTGPI 103 (207)
Q Consensus 93 ~l~~N~l~~~~ 103 (207)
++++|.+++..
T Consensus 110 ~Ls~n~i~~~~ 120 (477)
T 2id5_A 110 DISENKIVILL 120 (477)
T ss_dssp ECTTSCCCEEC
T ss_pred ECCCCccccCC
Confidence 55555555433
No 74
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=7.7e-14 Score=102.97 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=78.9
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
-+.+|+.|++++|.++ .+|......++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3567888889888888 4554333334888899988888854 578888888889999888885544556888888888
Q ss_pred cCCCCcCcCCCCC---CCCCCCCCcccccCCCCC
Q 046642 93 DVSDNLLTGPIPR---GKQFDTFGKSSFDGNPGL 123 (207)
Q Consensus 93 ~l~~N~l~~~~p~---~~~~~~l~~~~~~~n~~~ 123 (207)
++++|.++ .+|. ...+..+..+++.+|+..
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 88888886 3443 345566777788888753
No 75
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=2.5e-13 Score=120.79 Aligned_cols=109 Identities=28% Similarity=0.400 Sum_probs=91.5
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
+..+..|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..|..+++|+.|+|++|.|+ .+|..+..+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 345678999999999998 77777778999999999999998 88888999999999999999999 7788899999999
Q ss_pred eecCCCCcCcCCCCC-CCCCCCCCcccccCCCCC
Q 046642 91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGL 123 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~ 123 (207)
+|+|++|.++ .+|. ...+..+..+++.+|+..
T Consensus 297 ~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp EEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 9999999997 5565 355677788888888754
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=1.3e-13 Score=117.39 Aligned_cols=112 Identities=17% Similarity=0.160 Sum_probs=89.1
Q ss_pred hhcccccEEEccCCCCCCCCchhcc-CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIA-NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++. | ....+++|+.|++++|.+++ +|..+..+++|+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~ 217 (487)
T 3oja_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT 217 (487)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCS
T ss_pred cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCcc
Confidence 4567888888888888877777775 688888888888888754 3 24468899999999999995 445588999999
Q ss_pred eecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCC
Q 046642 91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGG 126 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 126 (207)
.|++++|.+++..+....+..+..+++.+|+..|++
T Consensus 218 ~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp EEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred EEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 999999999964444455677888999999999765
No 77
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.43 E-value=3.2e-13 Score=113.33 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=98.8
Q ss_pred ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642 15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV 94 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l 94 (207)
++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 68999999999999889999999999999999999999888889999999999999999999888889999999999999
Q ss_pred CCCcCcCCCCCC-CCCCCCCcccccCCCCC
Q 046642 95 SDNLLTGPIPRG-KQFDTFGKSSFDGNPGL 123 (207)
Q Consensus 95 ~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~ 123 (207)
++|.+++..|.. ..+..+..+++.+|...
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcccccChhhccccccccEEECCCCccc
Confidence 999999876753 45678888889888643
No 78
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.43 E-value=3.3e-13 Score=109.03 Aligned_cols=108 Identities=21% Similarity=0.207 Sum_probs=69.1
Q ss_pred ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642 15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV 94 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l 94 (207)
++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 56666777777776666666677777777777777776555556667777777777777777 56666677777777777
Q ss_pred CCCcCcCCCCCCC-------CCCCCCcccccCCCCC
Q 046642 95 SDNLLTGPIPRGK-------QFDTFGKSSFDGNPGL 123 (207)
Q Consensus 95 ~~N~l~~~~p~~~-------~~~~l~~~~~~~n~~~ 123 (207)
++|++++..+... ....+..+++.+||..
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCCCccChhHccccccccccccccceEeecCccc
Confidence 7777764332211 0233455566666654
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.43 E-value=4.2e-13 Score=112.54 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=68.8
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..++++++.|+|++|.|++..+..|.++++|+.|+|++|.+++..+..|..+++|+.|++++|.++...+..|..+++|+
T Consensus 60 ~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 60 DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp SCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 34556777888888888766667777788888888888887766667777788888888888887755555677777788
Q ss_pred eecCCCCcCcCC
Q 046642 91 FFDVSDNLLTGP 102 (207)
Q Consensus 91 ~l~l~~N~l~~~ 102 (207)
.|++++|.++..
T Consensus 140 ~L~L~~N~i~~~ 151 (440)
T 3zyj_A 140 ELWLRNNPIESI 151 (440)
T ss_dssp EEECCSCCCCEE
T ss_pred eeeCCCCccccc
Confidence 888887777643
No 80
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.43 E-value=2e-13 Score=109.07 Aligned_cols=108 Identities=17% Similarity=0.282 Sum_probs=58.2
Q ss_pred cccccEEEccCCCCCCCCc-hhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCC-CCchhhhcCCccce
Q 046642 14 SNLITAIILSNNSFVGEIP-TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSG-NIPQQLSELTSLEF 91 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~ 91 (207)
+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++ ..|..+..+++|+.
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 4555566666665553332 345555566666666665555555555555666666666665553 34555555556666
Q ss_pred ecCCCCcCcCCCCCC-CCCCCCCcccccCCC
Q 046642 92 FDVSDNLLTGPIPRG-KQFDTFGKSSFDGNP 121 (207)
Q Consensus 92 l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~ 121 (207)
|++++|.+++..|.. ..+..+..+++.+|.
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence 666666555443332 233445555555543
No 81
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=3.8e-13 Score=109.30 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=79.3
Q ss_pred cccccEEEccC-CCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 14 SNLITAIILSN-NSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 14 l~~L~~L~Ls~-n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
+++|+.|+|++ |.|++..+..|.+|++|+.|+|++|++++..|..|..+++|+.|+|++|.|++..+..+..+. |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 45699999996 999988888999999999999999999988889999999999999999999976666666665 9999
Q ss_pred cCCCCcCcCCC
Q 046642 93 DVSDNLLTGPI 103 (207)
Q Consensus 93 ~l~~N~l~~~~ 103 (207)
++.+|.+.+..
T Consensus 109 ~l~~N~~~c~c 119 (347)
T 2ifg_A 109 VLSGNPLHCSC 119 (347)
T ss_dssp ECCSSCCCCCG
T ss_pred EeeCCCccCCC
Confidence 99999998644
No 82
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=4.1e-13 Score=116.30 Aligned_cols=93 Identities=25% Similarity=0.311 Sum_probs=85.3
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCC-chhhhcCCcc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNI-PQQLSELTSL 89 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~-p~~~~~l~~L 89 (207)
...+++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|.+++ +| .++.+++|+.|++++|.+++.. |..+..+++|
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence 456789999999999999 889999999999999999999995 77 8999999999999999999776 9999999999
Q ss_pred ceecCCCCcCcCCCCCC
Q 046642 90 EFFDVSDNLLTGPIPRG 106 (207)
Q Consensus 90 ~~l~l~~N~l~~~~p~~ 106 (207)
+.|++++|++++..|..
T Consensus 536 ~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 536 VLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CEEECTTSGGGGSSSCT
T ss_pred CEEEecCCcCCCCccHH
Confidence 99999999999776643
No 83
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.42 E-value=2.8e-13 Score=122.29 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=70.8
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCC-cccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRI-PLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
++++++.|+|++|.|++..|..|.++++|++|+|++|...+.+ |..|.++++|++|++++|.+++..|+.|..+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 6677777777777777666666777777777777777544344 566667777777777777776666666666777777
Q ss_pred ecCCCCcCcCCCCC---CCCCCCCCcccccCCC
Q 046642 92 FDVSDNLLTGPIPR---GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 92 l~l~~N~l~~~~p~---~~~~~~l~~~~~~~n~ 121 (207)
|++++|.+++.+|. ...+..++.+++++|.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCc
Confidence 77777766654443 2334455555555553
No 84
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=3.2e-13 Score=99.64 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=87.0
Q ss_pred hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCch--hhhcCC
Q 046642 10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ--QLSELT 87 (207)
Q Consensus 10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~--~~~~l~ 87 (207)
+....++|+.|++++|.|++. ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|. .+..++
T Consensus 37 ~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~ 113 (176)
T 1a9n_A 37 LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLK 113 (176)
T ss_dssp GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCT
T ss_pred hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCC
Confidence 344556999999999999964 67899999999999999999554455689999999999999997 6776 789999
Q ss_pred ccceecCCCCcCcCCCCC-----CCCCCCCCcccccCC
Q 046642 88 SLEFFDVSDNLLTGPIPR-----GKQFDTFGKSSFDGN 120 (207)
Q Consensus 88 ~L~~l~l~~N~l~~~~p~-----~~~~~~l~~~~~~~n 120 (207)
+|+.|++++|+++ .+|. ...++.+..+++.+|
T Consensus 114 ~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 114 SLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence 9999999999998 4454 234555666666655
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.41 E-value=1.4e-13 Score=106.29 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=85.0
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCc-CCCCCcccCCCCCCCCEEecCC-CCCCCCCchhhhcCCccc
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNN-LQGRIPLSLSNLTAIESMDLSS-NMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~l~~L~ 90 (207)
++.+++.|++++|.+++..+..|.++++|+.|++++|. ++...+..|..+++|+.|++++ |.+++..+..|..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 56688889999998886666678888889999999886 7755556788888899999988 888866666788888888
Q ss_pred eecCCCCcCcCCCCCCCCCCCCC---cccccCCCC
Q 046642 91 FFDVSDNLLTGPIPRGKQFDTFG---KSSFDGNPG 122 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~~~~~~l~---~~~~~~n~~ 122 (207)
.|++++|.+++ +|....+..+. .+++.+|+.
T Consensus 109 ~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPY 142 (239)
T ss_dssp EEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTT
T ss_pred EEeCCCCCCcc-ccccccccccccccEEECCCCcc
Confidence 88888888885 66555555565 677777743
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.40 E-value=5.9e-13 Score=114.55 Aligned_cols=110 Identities=19% Similarity=0.108 Sum_probs=71.4
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
.++++++.|++++|.+++..+..|.++++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|++
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 35566777777777777666666777777777777777776555666777777777777777776555566667777777
Q ss_pred ecCCCCcCcCCCC-CCCCCCCCCcccccCCC
Q 046642 92 FDVSDNLLTGPIP-RGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 92 l~l~~N~l~~~~p-~~~~~~~l~~~~~~~n~ 121 (207)
|++++|.+++..+ ....+..++.+++.+|.
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 135 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNL 135 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSC
T ss_pred ccccccccccCCCccccccccccEEecCCCc
Confidence 7777776664332 12344555555555553
No 87
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.40 E-value=2.7e-13 Score=118.89 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=77.5
Q ss_pred hhcccccEEEccCCCCCCC-----------------Cchhcc--CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCC
Q 046642 12 KLSNLITAIILSNNSFVGE-----------------IPTSIA--NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~-----------------~p~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~ 72 (207)
.-+++|++|+|++|.+++. +|..++ ++++|++|++++|.+.+.+|..++++++|+.|++++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 3467788888888888864 787777 888888888888888778888888888888888888
Q ss_pred CC-CCC-CCchhhhcC------CccceecCCCCcCcCCCCC---CCCCCCCCcccccCCC
Q 046642 73 NM-LSG-NIPQQLSEL------TSLEFFDVSDNLLTGPIPR---GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 73 N~-l~~-~~p~~~~~l------~~L~~l~l~~N~l~~~~p~---~~~~~~l~~~~~~~n~ 121 (207)
|. ++| .+|..++.+ ++|+.|++++|.++ .+|. ...+..+..+++.+|.
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc
Confidence 87 776 667666655 66777777777666 5554 2344445555555443
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.40 E-value=3.2e-13 Score=115.27 Aligned_cols=106 Identities=25% Similarity=0.211 Sum_probs=79.3
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
+++++++|++++|.+++..|..|.++++|++|++++|++++..|..|..+++|++|++++|.++ .+|.. .+++|++|
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHL 95 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEE
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEE
Confidence 4577888888888888777778888888888888888888666778888888888888888888 56655 77888888
Q ss_pred cCCCCcCcC-CCCC-CCCCCCCCcccccCCC
Q 046642 93 DVSDNLLTG-PIPR-GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 93 ~l~~N~l~~-~~p~-~~~~~~l~~~~~~~n~ 121 (207)
++++|.+++ .+|. ...+..+..+++.+|.
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc
Confidence 888888876 3443 2345556666666654
No 89
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.39 E-value=6.6e-13 Score=114.59 Aligned_cols=108 Identities=25% Similarity=0.192 Sum_probs=89.0
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
.++++++.|++++|.|++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++
T Consensus 49 ~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH 125 (562)
T ss_dssp TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence 45688999999999999877788999999999999999999877888999999999999999998 66765 7889999
Q ss_pred ecCCCCcCcC-CCCC-CCCCCCCCcccccCCCC
Q 046642 92 FDVSDNLLTG-PIPR-GKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 92 l~l~~N~l~~-~~p~-~~~~~~l~~~~~~~n~~ 122 (207)
|++++|.+++ .+|. ...+..+..+++++|..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 9999999886 2332 34556677777777653
No 90
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=4e-13 Score=108.09 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=78.0
Q ss_pred hhcccccEEEccCCCCCCCCchhc-cCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++. |. ...+++|+.|++++|.+++ +|..+..+++|+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~ 217 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT 217 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCS
T ss_pred hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCccc
Confidence 346677777777777776555555 3677777777777777633 32 3347788888888888884 455577888888
Q ss_pred eecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCC
Q 046642 91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGG 126 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 126 (207)
.|++++|.+++..+....+..+..+++.+|++.|++
T Consensus 218 ~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp EEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred EEECcCCcccchhhHhhcCCCCCEEEccCCCccCcC
Confidence 888888888853333345567777888888877654
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.39 E-value=2.1e-12 Score=113.61 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=58.9
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
.+++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence 34555556666665555555555555666666666666553333345566666666666666654444555566666666
Q ss_pred cCCCCcCcCCCCCC-CCCCCCCcccccCC
Q 046642 93 DVSDNLLTGPIPRG-KQFDTFGKSSFDGN 120 (207)
Q Consensus 93 ~l~~N~l~~~~p~~-~~~~~l~~~~~~~n 120 (207)
++++|.+++..|.. ..+..++.+++.+|
T Consensus 127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 127 DLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp ECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred ECCCCcccccCchhhcccccCCEEEccCC
Confidence 66666655544432 23344444444444
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.38 E-value=1.2e-13 Score=110.80 Aligned_cols=87 Identities=22% Similarity=0.260 Sum_probs=61.3
Q ss_pred cccccEEEccCCCCCCCCchhc--cCCCCCCEEECcCCcCCCCCcccCCCC-----CCCCEEecCCCCCCCCCchhhhcC
Q 046642 14 SNLITAIILSNNSFVGEIPTSI--ANLKGLRNLDLSNNNLQGRIPLSLSNL-----TAIESMDLSSNMLSGNIPQQLSEL 86 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~ls~N~l~~~~p~~~~~l 86 (207)
+++|++|++++|.+++..|..+ ..+++|+.|++++|.+++. |..+..+ ++|++|++++|.+++..|..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5677777777777777677665 6777777777777777754 6655555 677777777777776666667777
Q ss_pred CccceecCCCCcCcC
Q 046642 87 TSLEFFDVSDNLLTG 101 (207)
Q Consensus 87 ~~L~~l~l~~N~l~~ 101 (207)
++|+.|++++|++.+
T Consensus 173 ~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 173 PALSTLDLSDNPELG 187 (312)
T ss_dssp SSCCEEECCSCTTCH
T ss_pred CCCCEEECCCCCcCc
Confidence 777777777776554
No 93
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.38 E-value=1.4e-12 Score=105.41 Aligned_cols=85 Identities=27% Similarity=0.300 Sum_probs=50.9
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
++++++.|++++|.+++..|..|.++++|+.|++++|.+++..|..|..+++|+.|++++|.++ .+|..+. ++|++|
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVEL 128 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEE
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEE
Confidence 3456666666666666555556666666666666666666555666666666666666666665 3443322 445555
Q ss_pred cCCCCcCc
Q 046642 93 DVSDNLLT 100 (207)
Q Consensus 93 ~l~~N~l~ 100 (207)
++++|.++
T Consensus 129 ~l~~n~i~ 136 (332)
T 2ft3_A 129 RIHDNRIR 136 (332)
T ss_dssp ECCSSCCC
T ss_pred ECCCCccC
Confidence 55555554
No 94
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=3.3e-12 Score=115.45 Aligned_cols=108 Identities=26% Similarity=0.328 Sum_probs=69.7
Q ss_pred hhcccccEEEccCCCCCCCCchhccCC--------CCCCEEECcCCcCCCCCcccCC--CCCCCCEEecCCCCCCCCCch
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANL--------KGLRNLDLSNNNLQGRIPLSLS--NLTAIESMDLSSNMLSGNIPQ 81 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l--------~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~ls~N~l~~~~p~ 81 (207)
..+++|+.|+|++|.|+ .+|..+... ++|+.|+|++|+++ .+|..+. .+++|+.|++++|.+++ +|.
T Consensus 694 ~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~ 770 (876)
T 4ecn_A 694 ATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT 770 (876)
T ss_dssp HTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred ccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cch
Confidence 34567777777777777 555543322 26777777777777 5666665 67777777777777775 566
Q ss_pred hhhcCCccceecCCC------CcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642 82 QLSELTSLEFFDVSD------NLLTGPIPRG-KQFDTFGKSSFDGNPG 122 (207)
Q Consensus 82 ~~~~l~~L~~l~l~~------N~l~~~~p~~-~~~~~l~~~~~~~n~~ 122 (207)
.+..+++|+.|++++ |.+.+.+|.. ..+..+..+++++|..
T Consensus 771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 667777777777755 5566666643 3455666666666654
No 95
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.37 E-value=2e-12 Score=104.75 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=67.3
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
...+++|+.|++++|.+++. +. +..+++|+.|++++|.+++ + +.+..+++|+.|++++|.+++. ..+..+++|+
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 44566777777777777743 33 6677777777777777763 3 3566677777777777777643 3466667777
Q ss_pred eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCC
Q 046642 91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGL 123 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~ 123 (207)
.|++++|.+++..|.. ..++.+..+++.+|+..
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 7777777666544332 23455666666666543
No 96
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.35 E-value=1.2e-12 Score=105.14 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=59.6
Q ss_pred ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCC--CcccC--CCCCCCCEEecCCCCCCCCCc----hhhhcC
Q 046642 15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGR--IPLSL--SNLTAIESMDLSSNMLSGNIP----QQLSEL 86 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~p~~~--~~l~~L~~L~ls~N~l~~~~p----~~~~~l 86 (207)
++|++|++++|.+++..|..|..+++|+.|++++|++.+. .|..+ ..+++|+.|++++|.+++ ++ ..+..+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHHHhcC
Confidence 5666666666666655556666666666666666665533 22233 556666666666666652 22 223455
Q ss_pred CccceecCCCCcCcCCCCC--CCCCCCCCcccccCCC
Q 046642 87 TSLEFFDVSDNLLTGPIPR--GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 87 ~~L~~l~l~~N~l~~~~p~--~~~~~~l~~~~~~~n~ 121 (207)
++|+.|++++|.+++..|. ...+..+..+++++|.
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 6666666666666654432 2234555666666654
No 97
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.35 E-value=1e-13 Score=112.98 Aligned_cols=115 Identities=23% Similarity=0.365 Sum_probs=70.5
Q ss_pred hhcccccEEEccCC-CCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCC------------------------CCCC
Q 046642 12 KLSNLITAIILSNN-SFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNL------------------------TAIE 66 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n-~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l------------------------~~L~ 66 (207)
..+++|++|++++| .++...+..|..+++|+.|++++|.+++..|..+..+ ++|+
T Consensus 146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 225 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225 (353)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEE
T ss_pred ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhccccc
Confidence 34555666666665 3444444555556666666666666655555555554 4555
Q ss_pred EEecCCCCCCCC-------------------------------CchhhhcCCccceecCCCCcCcCCCCCC--CCCCCCC
Q 046642 67 SMDLSSNMLSGN-------------------------------IPQQLSELTSLEFFDVSDNLLTGPIPRG--KQFDTFG 113 (207)
Q Consensus 67 ~L~ls~N~l~~~-------------------------------~p~~~~~l~~L~~l~l~~N~l~~~~p~~--~~~~~l~ 113 (207)
.|++++|.+++. +|..+..+++|+.|++++|.++ .+|.. ..+..+.
T Consensus 226 ~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQ 304 (353)
T ss_dssp EEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred EEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCC
Confidence 555555555542 2334566778888888888887 45543 4567777
Q ss_pred cccccCCCCCCCCC
Q 046642 114 KSSFDGNPGLCGGP 127 (207)
Q Consensus 114 ~~~~~~n~~~c~~~ 127 (207)
.+++.+|++.|+|+
T Consensus 305 ~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 305 KIWLHTNPWDCSCP 318 (353)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEEeeCCCccCcCC
Confidence 88888888888774
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=2.8e-12 Score=102.11 Aligned_cols=103 Identities=24% Similarity=0.347 Sum_probs=59.6
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
...+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++ + ..+..+++|+.|++++|.+++. ..+..+++|+
T Consensus 86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence 3455666677777776663 23 36666666666666666663 2 3455666666666666666633 3455666666
Q ss_pred eecCCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642 91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n 120 (207)
.|++++|.+++..| ...+..+..+++++|
T Consensus 160 ~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 160 TLSLEDNQISDIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred EEEccCCccccchh-hcCCCccCEEECCCC
Confidence 66666666654333 334444555555554
No 99
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.35 E-value=6.2e-12 Score=101.42 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=69.2
Q ss_pred hhhcccccEEEccCCCCCC--CCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCc
Q 046642 11 EKLSNLITAIILSNNSFVG--EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTS 88 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~ 88 (207)
+..+++|+.|++++|.++. ..+..+..+++|+.|++++|.++ .+|..+. ++|+.|++++|.+++..|..+..+++
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~ 217 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNN 217 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCC
Confidence 3446667777777777653 55566667777777777777776 4554433 66777777777777665666777777
Q ss_pred cceecCCCCcCcCCCCC-CCCCCCCCcccccCCCC
Q 046642 89 LEFFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 89 L~~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~ 122 (207)
|+.|++++|.+++..+. ...+..+..+++.+|..
T Consensus 218 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred CCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 77777777777654442 23445566666666643
No 100
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=5.1e-13 Score=118.84 Aligned_cols=89 Identities=31% Similarity=0.522 Sum_probs=81.2
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
.+++|+.|+|++|.|+ .+|..|..+++|+.|+|++|.++ .+|..|+.+++|+.|+|++|.|+ .+|..|..+++|+.|
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL 321 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence 5788999999999999 88999999999999999999999 78999999999999999999998 788889999999999
Q ss_pred cCCCCcCcCCCC
Q 046642 93 DVSDNLLTGPIP 104 (207)
Q Consensus 93 ~l~~N~l~~~~p 104 (207)
++++|.+++.+|
T Consensus 322 ~L~~N~l~~~~p 333 (727)
T 4b8c_D 322 GVEGNPLEKQFL 333 (727)
T ss_dssp ECTTSCCCSHHH
T ss_pred eCCCCccCCCCh
Confidence 999999886544
No 101
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.33 E-value=3.6e-12 Score=102.19 Aligned_cols=83 Identities=22% Similarity=0.351 Sum_probs=42.5
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+++ ++. +..+++|+.
T Consensus 104 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTT 177 (308)
T ss_dssp TTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred cCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCE
Confidence 345556666666666653 222 5555555555555555552 222 4455555555555555553 222 445555555
Q ss_pred ecCCCCcCc
Q 046642 92 FDVSDNLLT 100 (207)
Q Consensus 92 l~l~~N~l~ 100 (207)
|++++|.++
T Consensus 178 L~l~~n~l~ 186 (308)
T 1h6u_A 178 LKADDNKIS 186 (308)
T ss_dssp EECCSSCCC
T ss_pred EECCCCccC
Confidence 555555554
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=104.18 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=72.1
Q ss_pred hhcccccEEEccCCCCCCC--Cc--hhccCCCCCCEEECcCCcCCCCCcc----cCCCCCCCCEEecCCCCCCCCCchhh
Q 046642 12 KLSNLITAIILSNNSFVGE--IP--TSIANLKGLRNLDLSNNNLQGRIPL----SLSNLTAIESMDLSSNMLSGNIPQQL 83 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~--~p--~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~ls~N~l~~~~p~~~ 83 (207)
..+++|++|+|++|.+.+. ++ ..+..+++|++|++++|.++ .++. .+..+++|++|++++|.+++..|..+
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 3567788888888887642 22 22356777888888888776 3333 24566778888888888876667666
Q ss_pred hcC---CccceecCCCCcCcCCCCCCCCCCCCCcccccCCCC
Q 046642 84 SEL---TSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 84 ~~l---~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 122 (207)
..+ ++|+.|++++|.++ .+|.... ..+..+++++|..
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l 284 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRL 284 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCC
T ss_pred HhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcC
Confidence 665 57888888888877 5555432 5667777777653
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=7.5e-12 Score=98.20 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=49.8
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
..+++|+.|++++|.|++. +. +..+++|+.|++++|++++ +|... . ++|+.|++++|.+++ ++ .+..+++|+.
T Consensus 60 ~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~ 132 (263)
T 1xeu_A 60 QFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEI 132 (263)
T ss_dssp GGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCE
T ss_pred hhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccE
Confidence 4456666666666666643 32 6666666666666666653 33211 1 444444444444442 22 2444555555
Q ss_pred ecCCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642 92 FDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120 (207)
Q Consensus 92 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n 120 (207)
|++++|++++ +|....+..+..+++.+|
T Consensus 133 L~Ls~N~i~~-~~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 133 LSIRNNKLKS-IVMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp EECTTSCCCB-CGGGGGCTTCCEEECTTS
T ss_pred EECCCCcCCC-ChHHccCCCCCEEECCCC
Confidence 5555555543 232233334444444444
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.32 E-value=9.1e-12 Score=99.07 Aligned_cols=105 Identities=27% Similarity=0.341 Sum_probs=79.5
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
...+++|+.|++++|.+++..+ +..+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++ + ..+..+++|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~ 137 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE 137 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCC
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCC
Confidence 4557788888888888885433 7888888888888888873 33 47888888888888888885 3 4577888888
Q ss_pred eecCCCCcCcCCCCCCCCCCCCCcccccCCCC
Q 046642 91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 122 (207)
.|++++|.+++. +....+..+..+++++|..
T Consensus 138 ~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 138 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EEECCSSCCCCC-GGGGGCTTCSEEECCSSCC
T ss_pred EEEccCCcCCcc-hhhccCCCCCEEEccCCcc
Confidence 888888888854 5555566777777777743
No 105
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=9.8e-13 Score=118.82 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=81.5
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCc-CCC-CCcccCCCC-------CCCCEEecCCCCCCCCCch--
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNN-LQG-RIPLSLSNL-------TAIESMDLSSNMLSGNIPQ-- 81 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~-~~p~~~~~l-------~~L~~L~ls~N~l~~~~p~-- 81 (207)
.+++|+.|+|++|.+.+.+|..|+++++|+.|+|++|+ +++ .+|..++.+ ++|+.|++++|.++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 57788889999988888888888888888888888887 776 677655444 38888888888888 7777
Q ss_pred hhhcCCccceecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642 82 QLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 82 ~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~ 121 (207)
.+..+++|+.|++++|.++ .+|....+..+..+++.+|.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSC
T ss_pred hhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCc
Confidence 7788888888888888877 66654455555666666554
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=8.5e-12 Score=97.88 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=91.1
Q ss_pred hhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCC
Q 046642 8 LEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELT 87 (207)
Q Consensus 8 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~ 87 (207)
......+++|+.|++++|.+++ +|.. .. ++|+.|++++|.+++ ++ .+..+++|+.|++++|.+++. + .+..++
T Consensus 78 ~~~l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~ 150 (263)
T 1xeu_A 78 LSPLKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLS 150 (263)
T ss_dssp CGGGTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCT
T ss_pred ChhhccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCC
Confidence 3335678899999999999995 4543 33 899999999999985 44 689999999999999999954 4 688999
Q ss_pred ccceecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCC
Q 046642 88 SLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCG 125 (207)
Q Consensus 88 ~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~ 125 (207)
+|+.|++++|.+++. +....+..+..+++.+|+..+.
T Consensus 151 ~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 151 KLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 999999999999976 5556677888889999886554
No 107
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=7.9e-13 Score=112.50 Aligned_cols=107 Identities=19% Similarity=0.091 Sum_probs=78.3
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCC-CCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS-NLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
+++|+.|++++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|+.|++++|.+++. |. ...+++|+.|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEE
Confidence 46677788888888777777777788888888888888776676665 677888888888888754 32 3357788888
Q ss_pred cCCCCcCcCCCCCCCCCCCCCcccccCCCC
Q 046642 93 DVSDNLLTGPIPRGKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 93 ~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 122 (207)
++++|.+++..|....+..+..+++++|..
T Consensus 197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSCC
T ss_pred ECCCCCCCCCCHhHcCCCCccEEEecCCcC
Confidence 888888887666555566677777777753
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.30 E-value=3.1e-12 Score=102.45 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=78.4
Q ss_pred cccccEEEccCCCCCCCCchhc--cCCCCCCEEECcCCcCCCCCc----ccCCCCCCCCEEecCCCCCCCCCchhhhcCC
Q 046642 14 SNLITAIILSNNSFVGEIPTSI--ANLKGLRNLDLSNNNLQGRIP----LSLSNLTAIESMDLSSNMLSGNIPQQLSELT 87 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~ 87 (207)
+++|+.|++++|.+++..|..+ ..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+++..|..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568899999999888888877 788888888888888876544 3445678888888888888877777788888
Q ss_pred ccceecCCCCcCcCC--CC-CC--CCCCCCCcccccCCC
Q 046642 88 SLEFFDVSDNLLTGP--IP-RG--KQFDTFGKSSFDGNP 121 (207)
Q Consensus 88 ~L~~l~l~~N~l~~~--~p-~~--~~~~~l~~~~~~~n~ 121 (207)
+|++|++++|++.+. ++ .. ..++.+..+++.+|.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 888888888886541 11 11 234455555555553
No 109
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.30 E-value=1.1e-11 Score=99.36 Aligned_cols=104 Identities=22% Similarity=0.376 Sum_probs=68.3
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
...+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+++. +. +..+++|+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~ 154 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQ 154 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCC
T ss_pred HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCcc
Confidence 4456677777777777764 33 56777777777777777763 443 67777777777777777743 33 66777777
Q ss_pred eecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642 91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~ 121 (207)
.|++++|.+++..+ ...+..+..+++.+|.
T Consensus 155 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 155 YLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred EEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence 77777777774332 4444555555655553
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=1.2e-11 Score=107.92 Aligned_cols=101 Identities=23% Similarity=0.339 Sum_probs=51.0
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ 93 (207)
+++|+.|+|++|.|++ + +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+
T Consensus 108 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 181 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 181 (605)
T ss_dssp CTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence 3444444444444442 1 2244455555555555555422 345555555555555555554433 55555666666
Q ss_pred CCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642 94 VSDNLLTGPIPRGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 94 l~~N~l~~~~p~~~~~~~l~~~~~~~n~ 121 (207)
+++|.+++ +|....+..+..+++.+|+
T Consensus 182 Ls~N~i~~-l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 182 LSKNHISD-LRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCSSCCCB-CGGGTTCTTCSEEECCSEE
T ss_pred CcCCCCCC-ChHHccCCCCCEEEccCCc
Confidence 66665553 2444444555555555554
No 111
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.25 E-value=4.4e-12 Score=97.78 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=63.5
Q ss_pred hhcccccEEEccCCC-CCCCCchhccCCCCCCEEECcC-CcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642 12 KLSNLITAIILSNNS-FVGEIPTSIANLKGLRNLDLSN-NNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~-i~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 89 (207)
..+++|+.|++++|. ++...+..|.++++|+.|++++ |.+++..+..|..+++|+.|++++|.+++ +|. +..+++|
T Consensus 52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L 129 (239)
T 2xwt_C 52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYST 129 (239)
T ss_dssp TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBC
T ss_pred cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccc
Confidence 345667777777775 6644455666777777777776 66665445566666677777777666663 444 5555555
Q ss_pred c---eecCCCC-cCcCCCCC-CCCCCCCC-cccccCCC
Q 046642 90 E---FFDVSDN-LLTGPIPR-GKQFDTFG-KSSFDGNP 121 (207)
Q Consensus 90 ~---~l~l~~N-~l~~~~p~-~~~~~~l~-~~~~~~n~ 121 (207)
+ .|++++| .+++..+. ...+..+. .+++.+|.
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 5 6666666 55533332 12334444 55555543
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.25 E-value=3.7e-11 Score=104.77 Aligned_cols=101 Identities=25% Similarity=0.374 Sum_probs=54.0
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ 93 (207)
+++|+.|+|++|.|++ +| .+..+++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+++. ..+..+++|+.|+
T Consensus 86 l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 159 (605)
T ss_dssp CTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence 3444444444444442 22 34445555555555555542 2 2355555566666666666533 3456666666666
Q ss_pred CCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642 94 VSDNLLTGPIPRGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 94 l~~N~l~~~~p~~~~~~~l~~~~~~~n~ 121 (207)
+++|.+++..| ...+..+..+++++|.
T Consensus 160 Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 160 LEDNQISDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp CCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CcCCcCCCchh-hccCCCCCEEECcCCC
Confidence 66666665444 4455566666666664
No 113
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.23 E-value=2.4e-11 Score=102.55 Aligned_cols=83 Identities=30% Similarity=0.383 Sum_probs=40.4
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..| +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 344555556666555553222 4555555555555555553221 4445555555555555554333 344444444
Q ss_pred ecCCCCcCc
Q 046642 92 FDVSDNLLT 100 (207)
Q Consensus 92 l~l~~N~l~ 100 (207)
|++++|.++
T Consensus 336 L~l~~n~l~ 344 (466)
T 1o6v_A 336 LFFYNNKVS 344 (466)
T ss_dssp EECCSSCCC
T ss_pred eECCCCccC
Confidence 444444444
No 114
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.23 E-value=3.9e-12 Score=102.28 Aligned_cols=106 Identities=19% Similarity=0.105 Sum_probs=62.4
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccC-CCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL-SNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++. |. ...+++|+.|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE
Confidence 4556666666666665555556666666666666666665444444 3566666666666666632 32 2236666666
Q ss_pred cCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642 93 DVSDNLLTGPIPRGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 93 ~l~~N~l~~~~p~~~~~~~l~~~~~~~n~ 121 (207)
++++|.+++..+....+..+..+++++|.
T Consensus 197 ~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred ECCCCcCCcchhhhcccCcccEEECcCCc
Confidence 66666666544443444556666666664
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.21 E-value=6.5e-11 Score=99.88 Aligned_cols=104 Identities=24% Similarity=0.340 Sum_probs=68.9
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
...+++|+.|++++|.+++..| +..+++|+.|++++|.+++. +. +..+++|+.|++++|.+++..| +..+++|+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 3445666777777777664433 66677777777777777643 33 6677777777777777775433 67777888
Q ss_pred eecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642 91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~ 121 (207)
.|++++|.+++..| ...+..+..+++.+|.
T Consensus 313 ~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 313 YLTLYFNNISDISP-VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp EEECCSSCCSCCGG-GGGCTTCCEEECCSSC
T ss_pred EEECcCCcCCCchh-hccCccCCEeECCCCc
Confidence 88888888776554 3345566666666664
No 116
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.19 E-value=1.4e-10 Score=93.83 Aligned_cols=81 Identities=26% Similarity=0.396 Sum_probs=40.4
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
..+++|++|++++|.+++ ++. +..+++|+.|++++|.++ .+| .+..+++|++|++++|.+++ ++. +..+++|+.
T Consensus 63 ~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYS 136 (347)
T ss_dssp GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCE
T ss_pred hhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeE
Confidence 344555555555555552 222 555555555555555554 222 35555555555555555552 222 444555555
Q ss_pred ecCCCCc
Q 046642 92 FDVSDNL 98 (207)
Q Consensus 92 l~l~~N~ 98 (207)
|++++|.
T Consensus 137 L~l~~n~ 143 (347)
T 4fmz_A 137 LNLGANH 143 (347)
T ss_dssp EECTTCT
T ss_pred EECCCCC
Confidence 5555553
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.14 E-value=2.4e-11 Score=98.96 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=79.2
Q ss_pred hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc-ccCCCCCCCCE-EecCCCCCCCCCchhhhcCC
Q 046642 10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP-LSLSNLTAIES-MDLSSNMLSGNIPQQLSELT 87 (207)
Q Consensus 10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~ls~N~l~~~~p~~~~~l~ 87 (207)
...++++++.|+|++|.|+...++.|.++++|+.|+|++|.+.+.+| ..|.+++++.. +.++.|+++...|+.|..++
T Consensus 25 P~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~ 104 (350)
T 4ay9_X 25 PSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104 (350)
T ss_dssp CTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred CcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence 34577899999999999995555679999999999999999865555 56888988775 66778999977788899999
Q ss_pred ccceecCCCCcCcCCCC
Q 046642 88 SLEFFDVSDNLLTGPIP 104 (207)
Q Consensus 88 ~L~~l~l~~N~l~~~~p 104 (207)
+|++|++++|.++...+
T Consensus 105 ~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPD 121 (350)
T ss_dssp TCCEEEEEEECCSSCCC
T ss_pred ccccccccccccccCCc
Confidence 99999999999985433
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.12 E-value=3.5e-10 Score=95.43 Aligned_cols=81 Identities=27% Similarity=0.343 Sum_probs=44.5
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
-+++|++|++++|.+++. | .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+++. | ++.+++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 355566666666666532 3 45556666666666666553 22 55555555555555555532 2 4555555555
Q ss_pred cCCCCcCcC
Q 046642 93 DVSDNLLTG 101 (207)
Q Consensus 93 ~l~~N~l~~ 101 (207)
++++|.+++
T Consensus 112 ~L~~N~l~~ 120 (457)
T 3bz5_A 112 NCDTNKLTK 120 (457)
T ss_dssp ECCSSCCSC
T ss_pred ECCCCcCCe
Confidence 555555553
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.12 E-value=2.4e-10 Score=98.92 Aligned_cols=52 Identities=27% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642 62 LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120 (207)
Q Consensus 62 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n 120 (207)
+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. .. ..+..+++++|
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N 190 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTN 190 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSS
T ss_pred CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCC
Confidence 3444444444444442 332 23444455555555443 333 11 34444445444
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.12 E-value=5.4e-10 Score=94.31 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=76.7
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
...+++|++|++++|.+++. | ++.+++|++|++++|.+++ +| ++.+++|++|++++|.+++ +| +..+++|+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~ 130 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLT 130 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCC
T ss_pred hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCC
Confidence 35678899999999999864 4 7888999999999999885 33 7888999999999999885 44 78888899
Q ss_pred eecCCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642 91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120 (207)
Q Consensus 91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n 120 (207)
.|++++|.+++. + ...+..+..+++.+|
T Consensus 131 ~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 131 YLNCARNTLTEI-D-VSHNTQLTELDCHLN 158 (457)
T ss_dssp EEECTTSCCSCC-C-CTTCTTCCEEECTTC
T ss_pred EEECCCCcccee-c-cccCCcCCEEECCCC
Confidence 999999988863 3 334455555555555
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=2.5e-13 Score=102.07 Aligned_cols=110 Identities=21% Similarity=0.251 Sum_probs=78.8
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
...+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence 3456778888888888875 56 6777888888888888887 667666667788888888888884 45 577778888
Q ss_pred eecCCCCcCcCCCC--CCCCCCCCCcccccCCCCCCC
Q 046642 91 FFDVSDNLLTGPIP--RGKQFDTFGKSSFDGNPGLCG 125 (207)
Q Consensus 91 ~l~l~~N~l~~~~p--~~~~~~~l~~~~~~~n~~~c~ 125 (207)
.|++++|.+++..+ ....+..+..+++.+|+..|.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 88888888774221 234456677777777765443
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.12 E-value=2.7e-10 Score=98.64 Aligned_cols=92 Identities=25% Similarity=0.425 Sum_probs=45.2
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ 93 (207)
+++|+.|+|++|.|+ .+| ..+++|+.|++++|.+++ +|. +.. +|+.|++++|.+++ +|. .+++|+.|+
T Consensus 79 ~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 79 PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN 146 (571)
T ss_dssp CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence 344555555555555 344 234555555555555553 444 333 55555555555553 333 345555555
Q ss_pred CCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642 94 VSDNLLTGPIPRGKQFDTFGKSSFDGN 120 (207)
Q Consensus 94 l~~N~l~~~~p~~~~~~~l~~~~~~~n 120 (207)
+++|.+++ +|. .+..+..+++++|
T Consensus 147 Ls~N~l~~-lp~--~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 147 ADNNQLTM-LPE--LPTSLEVLSVRNN 170 (571)
T ss_dssp CCSSCCSC-CCC--CCTTCCEEECCSS
T ss_pred CCCCccCc-CCC--cCCCcCEEECCCC
Confidence 55555553 333 2334444444444
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.04 E-value=3.1e-11 Score=98.71 Aligned_cols=95 Identities=23% Similarity=0.309 Sum_probs=67.6
Q ss_pred hhhhhcccccEEEccCCCCCCCCc----hhccCCC-CCCEEECcCCcCCCCCcccCCCC-----CCCCEEecCCCCCCCC
Q 046642 9 EYEKLSNLITAIILSNNSFVGEIP----TSIANLK-GLRNLDLSNNNLQGRIPLSLSNL-----TAIESMDLSSNMLSGN 78 (207)
Q Consensus 9 ~~~~~l~~L~~L~Ls~n~i~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~ls~N~l~~~ 78 (207)
++...+++|+.|+|++|.+++..+ ..+..++ +|+.|+|++|.+++..+..+..+ ++|+.|++++|.+++.
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 445566678888888888876655 6677777 78888888888876666666554 7788888888888766
Q ss_pred Cchhhhc----C-CccceecCCCCcCcCCC
Q 046642 79 IPQQLSE----L-TSLEFFDVSDNLLTGPI 103 (207)
Q Consensus 79 ~p~~~~~----l-~~L~~l~l~~N~l~~~~ 103 (207)
.+..+.. + ++|+.|++++|.+++..
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 6554333 3 67888888888776543
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.99 E-value=1.8e-09 Score=91.05 Aligned_cols=81 Identities=27% Similarity=0.390 Sum_probs=53.2
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
.+++|++|++++|.+++ +| .|+.+++|++|++++|++++ +|..+ .+|+.|++++|.+++ +| .+..+++|+.|
T Consensus 129 ~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 129 LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAI 200 (454)
T ss_dssp CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEE
Confidence 34567777777777774 55 47777777777777777763 55432 366677777777664 45 36666666666
Q ss_pred cCCCCcCcC
Q 046642 93 DVSDNLLTG 101 (207)
Q Consensus 93 ~l~~N~l~~ 101 (207)
++++|.+++
T Consensus 201 ~l~~N~l~~ 209 (454)
T 1jl5_A 201 YADNNSLKK 209 (454)
T ss_dssp ECCSSCCSS
T ss_pred ECCCCcCCc
Confidence 666666664
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.98 E-value=4.8e-10 Score=94.54 Aligned_cols=96 Identities=24% Similarity=0.315 Sum_probs=51.2
Q ss_pred ccccEEEccCCCCCCCCchhccCC-CCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642 15 NLITAIILSNNSFVGEIPTSIANL-KGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ 93 (207)
++|+.|++++|.+++ + ..+ ++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|. .+++|+.|+
T Consensus 297 ~~L~~L~l~~N~l~~-i----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~ 363 (454)
T 1jl5_A 297 PNLYYLNASSNEIRS-L----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLH 363 (454)
T ss_dssp TTCCEEECCSSCCSE-E----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred CcCCEEECcCCcCCc-c----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEE
Confidence 444555555555442 1 122 477888888888774 5543 467888888888887 4565 467788888
Q ss_pred CCCCcCcC--CCCCCC-CC-------------CCCCcccccCCCCC
Q 046642 94 VSDNLLTG--PIPRGK-QF-------------DTFGKSSFDGNPGL 123 (207)
Q Consensus 94 l~~N~l~~--~~p~~~-~~-------------~~l~~~~~~~n~~~ 123 (207)
+++|++++ .+|... .+ ..+..+++++|+..
T Consensus 364 L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 364 VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred CCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 88888876 455431 11 34566666666544
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=1.1e-12 Score=98.47 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=89.9
Q ss_pred hhhcccccEEEccCCCCCCCCch------hccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhh
Q 046642 11 EKLSNLITAIILSNNSFVGEIPT------SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLS 84 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~ 84 (207)
......++.++++.+.+++..|. .+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34566788888888888887776 89999999999999999985 77 8899999999999999999 7888888
Q ss_pred cCCccceecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642 85 ELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 85 ~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~ 121 (207)
.+++|+.|++++|.+++ +|....+..+..+++.+|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEE
T ss_pred cCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCc
Confidence 88999999999999985 4544445567777787774
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.97 E-value=2.2e-09 Score=93.88 Aligned_cols=75 Identities=27% Similarity=0.396 Sum_probs=38.1
Q ss_pred CCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCC-CCCCCCCCcccc
Q 046642 39 KGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR-GKQFDTFGKSSF 117 (207)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~~l~~~~~ 117 (207)
++|+.|++++|.+++ +| ..+++|+.|++++|.|+ .+|. .+++|+.|++++|.++ .+|. ...+..+..+++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 345555555555542 33 23345555555555555 3443 3455666666666665 3343 233445555566
Q ss_pred cCCCC
Q 046642 118 DGNPG 122 (207)
Q Consensus 118 ~~n~~ 122 (207)
.+|+.
T Consensus 292 ~~N~l 296 (622)
T 3g06_A 292 EGNPL 296 (622)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 66654
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.97 E-value=3e-11 Score=97.36 Aligned_cols=84 Identities=14% Similarity=0.243 Sum_probs=38.0
Q ss_pred cccccEEEccCCCCCCCCchhccCCCCCCEEECcCC-cCCC-CCcccCCCCCCCCEEecCCC-CCCCC-CchhhhcCC-c
Q 046642 14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNN-NLQG-RIPLSLSNLTAIESMDLSSN-MLSGN-IPQQLSELT-S 88 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n-~l~~-~~p~~~~~l~~L~~L~ls~N-~l~~~-~p~~~~~l~-~ 88 (207)
+++|+.|++++|.+++..+..+..+++|+.|++++| .+++ .++..+..+++|+.|++++| .+++. ++..+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 344444444444444444444444444444444444 3332 13333444444555555544 44422 233444444 5
Q ss_pred cceecCCCC
Q 046642 89 LEFFDVSDN 97 (207)
Q Consensus 89 L~~l~l~~N 97 (207)
|+.|++++|
T Consensus 197 L~~L~l~~~ 205 (336)
T 2ast_B 197 ITQLNLSGY 205 (336)
T ss_dssp CCEEECCSC
T ss_pred CCEEEeCCC
Confidence 555555554
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.95 E-value=6.8e-11 Score=97.33 Aligned_cols=111 Identities=15% Similarity=0.222 Sum_probs=61.9
Q ss_pred hcccccEEEccCCCCCC-----CCchhccCCCCCCEEECcCCcCC----CCCcccCCCCCCCCEEecCCCCCCCC----C
Q 046642 13 LSNLITAIILSNNSFVG-----EIPTSIANLKGLRNLDLSNNNLQ----GRIPLSLSNLTAIESMDLSSNMLSGN----I 79 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~-----~~p~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~ls~N~l~~~----~ 79 (207)
.+++|+.|++++|.|+. ..|..+..+++|+.|+|++|.++ +.+|..+..+++|+.|++++|.+++. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 34466666666666651 23335556666666666666663 34555566666666666666666543 3
Q ss_pred chhhhc--CCccceecCCCCcCcC----CCCCCC--CCCCCCcccccCCCCC
Q 046642 80 PQQLSE--LTSLEFFDVSDNLLTG----PIPRGK--QFDTFGKSSFDGNPGL 123 (207)
Q Consensus 80 p~~~~~--l~~L~~l~l~~N~l~~----~~p~~~--~~~~l~~~~~~~n~~~ 123 (207)
|..+.. +++|+.|++++|.+++ .+|... .++.+..+++.+|+..
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 444422 6666666666666664 233321 2355566666666544
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.94 E-value=1.1e-09 Score=95.75 Aligned_cols=84 Identities=24% Similarity=0.382 Sum_probs=73.1
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
.+++|+.|++++|.|++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.|+ .+|..+..+++|+.|
T Consensus 219 ~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 45788999999999984 55 45689999999999998 6676 6789999999999999 789999999999999
Q ss_pred cCCCCcCcCCCCC
Q 046642 93 DVSDNLLTGPIPR 105 (207)
Q Consensus 93 ~l~~N~l~~~~p~ 105 (207)
++++|++++..|.
T Consensus 290 ~L~~N~l~~~~~~ 302 (622)
T 3g06_A 290 NLEGNPLSERTLQ 302 (622)
T ss_dssp ECCSCCCCHHHHH
T ss_pred EecCCCCCCcCHH
Confidence 9999999976654
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.90 E-value=4.3e-10 Score=90.52 Aligned_cols=108 Identities=18% Similarity=0.262 Sum_probs=61.7
Q ss_pred cccccEEEccCC-CCCC-CCchhccCCCCCCEEECcCC-cCCCC-CcccCCCCC-CCCEEecCCC--CCC-CCCchhhhc
Q 046642 14 SNLITAIILSNN-SFVG-EIPTSIANLKGLRNLDLSNN-NLQGR-IPLSLSNLT-AIESMDLSSN--MLS-GNIPQQLSE 85 (207)
Q Consensus 14 l~~L~~L~Ls~n-~i~~-~~p~~~~~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~-~L~~L~ls~N--~l~-~~~p~~~~~ 85 (207)
+++|++|++++| .+++ .++..+..+++|+.|++++| .+++. ++..+..++ +|+.|++++| .++ +.+|..+..
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 566777777776 5554 24555666666777777776 66532 345555666 6666666666 333 244555566
Q ss_pred CCccceecCCCCc-CcCCCC-CCCCCCCCCcccccCCC
Q 046642 86 LTSLEFFDVSDNL-LTGPIP-RGKQFDTFGKSSFDGNP 121 (207)
Q Consensus 86 l~~L~~l~l~~N~-l~~~~p-~~~~~~~l~~~~~~~n~ 121 (207)
+++|+.|++++|. +++..+ ....+..+..+++.+|.
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 6666666666666 443222 22334455555555553
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.87 E-value=3e-10 Score=93.49 Aligned_cols=93 Identities=15% Similarity=0.293 Sum_probs=79.7
Q ss_pred hhcccccEEEccCCCCC----CCCchhccCCCCCCEEECcCCcCCCC----CcccC--CCCCCCCEEecCCCCCCC----
Q 046642 12 KLSNLITAIILSNNSFV----GEIPTSIANLKGLRNLDLSNNNLQGR----IPLSL--SNLTAIESMDLSSNMLSG---- 77 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~----~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~--~~l~~L~~L~ls~N~l~~---- 77 (207)
..+++|+.|+|++|.++ ..+|..+..+++|+.|+|++|.+++. +|..+ +.+++|+.|++++|.+++
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 45789999999999996 57888899999999999999999855 46666 448999999999999996
Q ss_pred CCchhh-hcCCccceecCCCCcCcCCCC
Q 046642 78 NIPQQL-SELTSLEFFDVSDNLLTGPIP 104 (207)
Q Consensus 78 ~~p~~~-~~l~~L~~l~l~~N~l~~~~p 104 (207)
.+|..+ .++++|+.|++++|.+++..+
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 377777 668999999999999997653
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.85 E-value=1.2e-09 Score=88.98 Aligned_cols=110 Identities=23% Similarity=0.210 Sum_probs=65.8
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcC-CcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSN-NNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 89 (207)
......++.|+|++|.|+ .+|.......+|+.|++++ |.++...++.|..+++|+.|++++|+|+...+..+.++.+|
T Consensus 150 ~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L 228 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228 (350)
T ss_dssp TTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred hhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHh
Confidence 334456777888888887 4555555566788888764 55553333567788888888888888884433445554444
Q ss_pred ceecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCC
Q 046642 90 EFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCG 125 (207)
Q Consensus 90 ~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~ 125 (207)
+.++. +.++ .+|....+..+..+.+. +++.|.
T Consensus 229 ~~l~~--~~l~-~lP~l~~l~~L~~l~l~-~~~~c~ 260 (350)
T 4ay9_X 229 RARST--YNLK-KLPTLEKLVALMEASLT-YPSHCC 260 (350)
T ss_dssp ECTTC--TTCC-CCCCTTTCCSCCEEECS-CHHHHH
T ss_pred hhccC--CCcC-cCCCchhCcChhhCcCC-CCcccc
Confidence 44433 2233 56655555556555543 455553
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.84 E-value=8e-10 Score=90.30 Aligned_cols=103 Identities=20% Similarity=0.196 Sum_probs=84.1
Q ss_pred EEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc----ccCCCCC-CCCEEecCCCCCCCCCchhhhcC-----Cc
Q 046642 19 AIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP----LSLSNLT-AIESMDLSSNMLSGNIPQQLSEL-----TS 88 (207)
Q Consensus 19 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~ls~N~l~~~~p~~~~~l-----~~ 88 (207)
.+++++|.+++.+|..+...++|+.|++++|.+++..+ ..+..++ +|+.|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46899999999888888877889999999999986666 7788888 99999999999998878777775 99
Q ss_pred cceecCCCCcCcCCCCCC-----CCC-CCCCcccccCCC
Q 046642 89 LEFFDVSDNLLTGPIPRG-----KQF-DTFGKSSFDGNP 121 (207)
Q Consensus 89 L~~l~l~~N~l~~~~p~~-----~~~-~~l~~~~~~~n~ 121 (207)
|+.|++++|.+++..+.. ... ..+..+++++|.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 999999999998655431 122 456667777664
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.82 E-value=4.3e-09 Score=82.60 Aligned_cols=64 Identities=25% Similarity=0.356 Sum_probs=27.4
Q ss_pred CCCCCEEECcCCcCCC--CCcccCCCCCCCCEEecCCCCCCCCCchhhhcCC--ccceecCCCCcCcCCC
Q 046642 38 LKGLRNLDLSNNNLQG--RIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELT--SLEFFDVSDNLLTGPI 103 (207)
Q Consensus 38 l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~--~L~~l~l~~N~l~~~~ 103 (207)
+++|+.|+|++|++++ .+|..+..+++|+.|+|++|.|++. ..+..+. +|+.|++++|++.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 4444455555554443 1223333444455555555544432 1122222 4445555555544433
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.61 E-value=2.9e-09 Score=83.57 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=60.4
Q ss_pred hhcccccEEEccCCCCCC--CCchhccCCCCCCEEECcCCcCCCCCcccCCCCC--CCCEEecCCCCCCCCCch------
Q 046642 12 KLSNLITAIILSNNSFVG--EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT--AIESMDLSSNMLSGNIPQ------ 81 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~ls~N~l~~~~p~------ 81 (207)
..+++|+.|+|++|.|++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|+.|+|++|.+.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456789999999999987 4456677889999999999999854 2333333 899999999998876652
Q ss_pred -hhhcCCccceec
Q 046642 82 -QLSELTSLEFFD 93 (207)
Q Consensus 82 -~~~~l~~L~~l~ 93 (207)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 366788888776
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.60 E-value=4.7e-09 Score=87.90 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=76.1
Q ss_pred hcccccEEEccCCCCCCCCchhccC-----CCCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCCCCCCchhh
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIAN-----LKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNMLSGNIPQQL 83 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~-----l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~~ 83 (207)
.+++|+.|++++|.+++..+..+.. .++|+.|++++|.+++. ++..+..+++|+.|++++|.+++..+..+
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 361 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH
Confidence 3678899999999887544433332 36888999999888754 45566677888889998888875544444
Q ss_pred hc-----CCccceecCCCCcCcC----CCCCC-CCCCCCCcccccCCCC
Q 046642 84 SE-----LTSLEFFDVSDNLLTG----PIPRG-KQFDTFGKSSFDGNPG 122 (207)
Q Consensus 84 ~~-----l~~L~~l~l~~N~l~~----~~p~~-~~~~~l~~~~~~~n~~ 122 (207)
.. .++|+.|++++|.+++ .+|.. ...+.+..+++.+|+.
T Consensus 362 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 43 5688888888888874 33322 2345677777777753
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.57 E-value=1.5e-09 Score=90.92 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=82.3
Q ss_pred cccccEEEccCCCCCCC----CchhccCCCCCCEEECcCCcCCCCCcccCC-----CCCCCCEEecCCCCCCCC----Cc
Q 046642 14 SNLITAIILSNNSFVGE----IPTSIANLKGLRNLDLSNNNLQGRIPLSLS-----NLTAIESMDLSSNMLSGN----IP 80 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~ls~N~l~~~----~p 80 (207)
+++|+.|++++|.++.. ++..+..+++|+.|++++|.+....+..+. ..++|+.|++++|.+++. ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 67899999999999854 677788899999999999998644333332 336999999999999865 46
Q ss_pred hhhhcCCccceecCCCCcCcCCCCCC------CCCCCCCcccccCCC
Q 046642 81 QQLSELTSLEFFDVSDNLLTGPIPRG------KQFDTFGKSSFDGNP 121 (207)
Q Consensus 81 ~~~~~l~~L~~l~l~~N~l~~~~p~~------~~~~~l~~~~~~~n~ 121 (207)
..+..+++|+.|++++|.+++..+.. .....+..+++.+|.
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 67778899999999999987532221 013467777887774
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=1.5e-07 Score=75.66 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=76.7
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCC-EEecCCCCCCCCCchhhhcCCccce
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIE-SMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
.+++|+.|+|++|.++...+..|.++++|+.++++.| ++...+..|.++.+|+ .+++.+ .++...+..|.++++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 4789999999999999666778999999999999998 7756678899999999 999998 777566688999999999
Q ss_pred ecCCCCcCcC
Q 046642 92 FDVSDNLLTG 101 (207)
Q Consensus 92 l~l~~N~l~~ 101 (207)
+++++|.++.
T Consensus 302 l~l~~n~i~~ 311 (329)
T 3sb4_A 302 VLATGDKITT 311 (329)
T ss_dssp EEECSSCCCE
T ss_pred EEeCCCccCc
Confidence 9999998883
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=3.1e-08 Score=81.41 Aligned_cols=111 Identities=19% Similarity=0.133 Sum_probs=78.1
Q ss_pred hhhcccccEEEccCCCCCCCCchhc-----cCCCCCCEEECcCCcCCC----CCcccCCCCCCCCEEecCCCCCCCC---
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSI-----ANLKGLRNLDLSNNNLQG----RIPLSLSNLTAIESMDLSSNMLSGN--- 78 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~-----~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~--- 78 (207)
...+.+|+.|+|++|.|+......+ ...++|+.|+|++|.++. .++..+...++|++|+|++|.++..
T Consensus 122 ~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~ 201 (372)
T 3un9_A 122 LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE 201 (372)
T ss_dssp HHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH
T ss_pred HHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH
Confidence 3456789999999999975444443 246789999999999863 2344556788999999999998742
Q ss_pred -CchhhhcCCccceecCCCCcCcCCCC----C-CCCCCCCCcccccCCC
Q 046642 79 -IPQQLSELTSLEFFDVSDNLLTGPIP----R-GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 79 -~p~~~~~l~~L~~l~l~~N~l~~~~p----~-~~~~~~l~~~~~~~n~ 121 (207)
++..+...++|+.|++++|.++..-. . ......+..+++++|+
T Consensus 202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 24456677889999999998874211 0 0123467777888875
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.35 E-value=6.3e-08 Score=79.57 Aligned_cols=107 Identities=16% Similarity=0.102 Sum_probs=70.7
Q ss_pred ccccEEEccCCCCCCCCchhc-cCCCCCCEEECcCCcCCCCCcccC-----CCCCCCCEEecCCCCCCC----CCchhhh
Q 046642 15 NLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSL-----SNLTAIESMDLSSNMLSG----NIPQQLS 84 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~ls~N~l~~----~~p~~~~ 84 (207)
.+|+.|+|++|.|+......+ ..+++|+.|+|++|.++......+ ...++|+.|++++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 578899999998874333333 346788999999998874333333 345789999999998863 2334456
Q ss_pred cCCccceecCCCCcCcCCC----CC-CCCCCCCCcccccCCC
Q 046642 85 ELTSLEFFDVSDNLLTGPI----PR-GKQFDTFGKSSFDGNP 121 (207)
Q Consensus 85 ~l~~L~~l~l~~N~l~~~~----p~-~~~~~~l~~~~~~~n~ 121 (207)
..++|++|++++|.++..- +. ......+..+++++|.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 7888999999999886311 10 1122356677777764
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.15 E-value=4e-07 Score=67.38 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=66.4
Q ss_pred hcccccEEEccCC-CCCCC----CchhccCCCCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCCCCC----C
Q 046642 13 LSNLITAIILSNN-SFVGE----IPTSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNMLSGN----I 79 (207)
Q Consensus 13 ~l~~L~~L~Ls~n-~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~----~ 79 (207)
..+.|+.|+|++| .|... +...+...++|+.|+|++|.+... +...+...++|+.|+|++|.|+.. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3567999999999 88632 344566678899999999998632 233455567899999999998742 3
Q ss_pred chhhhcCCccceecC--CCCcCcC
Q 046642 80 PQQLSELTSLEFFDV--SDNLLTG 101 (207)
Q Consensus 80 p~~~~~l~~L~~l~l--~~N~l~~ 101 (207)
...+...++|+.|++ ++|.++.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHhCCCceEEEecCCCCCCCH
Confidence 445667788999999 8888863
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.12 E-value=2.7e-07 Score=79.55 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=37.2
Q ss_pred cccccEEEcc----CCCCCCC-----CchhccCCCCCCEEECcCCc--CCCCCcccCC-CCCCCCEEecCCCCCCC-CCc
Q 046642 14 SNLITAIILS----NNSFVGE-----IPTSIANLKGLRNLDLSNNN--LQGRIPLSLS-NLTAIESMDLSSNMLSG-NIP 80 (207)
Q Consensus 14 l~~L~~L~Ls----~n~i~~~-----~p~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~-~l~~L~~L~ls~N~l~~-~~p 80 (207)
+++|+.|+++ .|.+++. ++..+.++++|+.|+++.|. +++..+..+. .+++|+.|++++|.+++ .++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 5556666664 4555532 22223445555555554322 3322222221 24445555555555442 122
Q ss_pred hhhhcCCccceecCCCCcC
Q 046642 81 QQLSELTSLEFFDVSDNLL 99 (207)
Q Consensus 81 ~~~~~l~~L~~l~l~~N~l 99 (207)
..+..+++|+.|++++|.+
T Consensus 482 ~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHHTCCTTCCEEEEESCCC
T ss_pred HHHhcCcccCeeeccCCCC
Confidence 2334444555555555544
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.12 E-value=7.6e-07 Score=65.89 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=38.6
Q ss_pred hccCCCCCCEEECcCC-cCCCC----CcccCCCCCCCCEEecCCCCCCCC----CchhhhcCCccceecCCCCcCc
Q 046642 34 SIANLKGLRNLDLSNN-NLQGR----IPLSLSNLTAIESMDLSSNMLSGN----IPQQLSELTSLEFFDVSDNLLT 100 (207)
Q Consensus 34 ~~~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~l~l~~N~l~ 100 (207)
.+...++|+.|+|++| .+... +...+...++|+.|+|++|.+... +...+...++|+.|++++|.++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3445666777777776 66421 233445556677777777766521 1223444566777777777665
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=5.6e-06 Score=66.43 Aligned_cols=82 Identities=9% Similarity=-0.007 Sum_probs=71.6
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCC-EEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLR-NLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 89 (207)
+..+.+|+.|++.+| ++..-+..|.++++|+ .+++.. .++...+..|.++++|+.+++++|.++...+..|.++++|
T Consensus 246 F~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred hhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 556889999999998 7767777899999999 999999 7775667899999999999999999996666789999999
Q ss_pred ceecC
Q 046642 90 EFFDV 94 (207)
Q Consensus 90 ~~l~l 94 (207)
+.++.
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 98764
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=1.1e-06 Score=64.47 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=57.1
Q ss_pred cccEEEccCCCCCCCCchhccCCCCCCEEECcCCc-CCCCCcccCCCC----CCCCEEecCCCC-CCCCCchhhhcCCcc
Q 046642 16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNN-LQGRIPLSLSNL----TAIESMDLSSNM-LSGNIPQQLSELTSL 89 (207)
Q Consensus 16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~ls~N~-l~~~~p~~~~~l~~L 89 (207)
.|+.||++++.|+..--..+..+++|+.|+|++|. ++..--..+..+ ++|+.|+++++. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 47888888888876555567788888888888885 553222334443 368888888874 663222346677888
Q ss_pred ceecCCCCc
Q 046642 90 EFFDVSDNL 98 (207)
Q Consensus 90 ~~l~l~~N~ 98 (207)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 888888764
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.88 E-value=9.3e-07 Score=76.15 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=64.9
Q ss_pred hhcccccEEEcc--C----CCCCCCC-----chhccCCCCCCEEECcCCcCCCCCcccCCC-CCCCCEEecCCCCCCCCC
Q 046642 12 KLSNLITAIILS--N----NSFVGEI-----PTSIANLKGLRNLDLSNNNLQGRIPLSLSN-LTAIESMDLSSNMLSGNI 79 (207)
Q Consensus 12 ~~l~~L~~L~Ls--~----n~i~~~~-----p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~ls~N~l~~~~ 79 (207)
..+++|+.|+++ + |.++... +..+..+++|+.|++++ .++...+..+.. +++|+.|++++|.+++..
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 346778888887 4 5555221 12255667788888866 554333334433 677888888887776443
Q ss_pred chhh-hcCCccceecCCCCcCcCCCCC--CCCCCCCCcccccCCCC
Q 046642 80 PQQL-SELTSLEFFDVSDNLLTGPIPR--GKQFDTFGKSSFDGNPG 122 (207)
Q Consensus 80 p~~~-~~l~~L~~l~l~~N~l~~~~p~--~~~~~~l~~~~~~~n~~ 122 (207)
+..+ ..+++|+.|++++|.+++.... ...++.+..+++.+|+.
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 3333 5577788888888777432211 12245566666666543
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.85 E-value=4.3e-06 Score=71.99 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=55.5
Q ss_pred hcccccEEEccCCCCCCC----CchhccCCCCCCEEECcCCcCCC----CCcccCCCCCCCCEEecCCCCCCCCCchhhh
Q 046642 13 LSNLITAIILSNNSFVGE----IPTSIANLKGLRNLDLSNNNLQG----RIPLSLSNLTAIESMDLSSNMLSGNIPQQLS 84 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~ 84 (207)
.+++|++|+|++|.+++. ++..+..+++|+.|++++|.+++ .++..+..+++|+.|++++|.+.+ +|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 457788888888877654 33344567778888888887762 233344567778888888777763 556666
Q ss_pred cCCccceecCCC
Q 046642 85 ELTSLEFFDVSD 96 (207)
Q Consensus 85 ~l~~L~~l~l~~ 96 (207)
.+++|+.|+++.
T Consensus 241 ~~~~L~~L~l~~ 252 (592)
T 3ogk_B 241 AAANLEEFCGGS 252 (592)
T ss_dssp HCTTCCEEEECB
T ss_pred hhhHHHhhcccc
Confidence 666666666653
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.73 E-value=4.3e-06 Score=71.99 Aligned_cols=86 Identities=19% Similarity=0.162 Sum_probs=44.8
Q ss_pred hcccccEEEccCCCCCCCCchhcc-CCCCCCEEECcCC-cCCCC-CcccCCCCCCCCEEecCCCCCCCCCchhhh----c
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIA-NLKGLRNLDLSNN-NLQGR-IPLSLSNLTAIESMDLSSNMLSGNIPQQLS----E 85 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~----~ 85 (207)
.+++|+.|+|++|.+++..+..+. .+++|+.|++++| .++.. ++..+..+++|++|++++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 455666677776666654444443 4566666666665 33211 223333455666666666655543333332 3
Q ss_pred CCccceecCCCCc
Q 046642 86 LTSLEFFDVSDNL 98 (207)
Q Consensus 86 l~~L~~l~l~~N~ 98 (207)
+++|+.|++++|.
T Consensus 183 ~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 183 YTSLVSLNISCLA 195 (594)
T ss_dssp CCCCCEEECTTCC
T ss_pred CCcCcEEEecccC
Confidence 3455555555554
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.54 E-value=6.8e-05 Score=52.14 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=46.4
Q ss_pred cEEEccCCCCC-CCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCC
Q 046642 18 TAIILSNNSFV-GEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSG 77 (207)
Q Consensus 18 ~~L~Ls~n~i~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 77 (207)
+.++-+++.++ ..+|..+ .++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 46888999886 3566543 2469999999999996666778889999999999998863
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.51 E-value=0.00023 Score=49.43 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=46.0
Q ss_pred CEEECcCCcCC-CCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcC
Q 046642 42 RNLDLSNNNLQ-GRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTG 101 (207)
Q Consensus 42 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 101 (207)
..++.+++.++ ..+|..+ ..+|+.|+|++|.|+...++.|..+++|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888888886 3566443 2478999999999996666778889999999999998875
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.38 E-value=2.3e-05 Score=63.98 Aligned_cols=108 Identities=12% Similarity=0.132 Sum_probs=63.2
Q ss_pred cccccEEEccCCCCCCCCchhcc--CCCCCCEEECcC--CcCCCC-----CcccC--CCCCCCCEEecCCCCCCCCCchh
Q 046642 14 SNLITAIILSNNSFVGEIPTSIA--NLKGLRNLDLSN--NNLQGR-----IPLSL--SNLTAIESMDLSSNMLSGNIPQQ 82 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~p~~~~--~l~~L~~L~Ls~--n~l~~~-----~p~~~--~~l~~L~~L~ls~N~l~~~~p~~ 82 (207)
.++|+.|++..+.++......+. .+++|+.|+|+. |...+. +...+ ..+++|+.|++++|.+....+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 56788888888777643333343 678888888753 221111 11122 24678888888888776433333
Q ss_pred hh---cCCccceecCCCCcCcCC----CCCC-CCCCCCCcccccCCC
Q 046642 83 LS---ELTSLEFFDVSDNLLTGP----IPRG-KQFDTFGKSSFDGNP 121 (207)
Q Consensus 83 ~~---~l~~L~~l~l~~N~l~~~----~p~~-~~~~~l~~~~~~~n~ 121 (207)
+. .+++|+.|+++.|.+++. ++.. ..+..+..+++..|.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 33 367788888888877642 2222 234556666666553
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.38 E-value=1.8e-05 Score=64.68 Aligned_cols=106 Identities=10% Similarity=0.189 Sum_probs=66.1
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccC--CCCCCCCEEecCC--CCCCCC-----Cchh
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL--SNLTAIESMDLSS--NMLSGN-----IPQQ 82 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~ls~--N~l~~~-----~p~~ 82 (207)
.-+++|+.|++++|.-. .++. +. +++|+.|++..+.+.......+ ..+++|+.|+|+. |...+. +...
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 44678999999988411 2333 33 7899999999888763322233 3688999999853 222111 1112
Q ss_pred h--hcCCccceecCCCCcCcCCCC----CCCCCCCCCcccccCC
Q 046642 83 L--SELTSLEFFDVSDNLLTGPIP----RGKQFDTFGKSSFDGN 120 (207)
Q Consensus 83 ~--~~l~~L~~l~l~~N~l~~~~p----~~~~~~~l~~~~~~~n 120 (207)
+ ..+++|+.|++.+|.+....+ ....++.+..++++.|
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 2 247899999999988763221 1123556777777665
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.31 E-value=0.0004 Score=57.42 Aligned_cols=101 Identities=12% Similarity=0.109 Sum_probs=73.5
Q ss_pred ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCC-----CCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642 15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQ-----GRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 89 (207)
.+|+.+.+ .+.++..-+..|.++++|+.+++.+|.+. ...+..|.++++|+.+++.+ .++..-...|.++.+|
T Consensus 248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 57888888 45566566778899999999999888764 34567889999999999994 4774555678889999
Q ss_pred ceecCCCCcCcCCCCCC--CCCCCCCcccccCC
Q 046642 90 EFFDVSDNLLTGPIPRG--KQFDTFGKSSFDGN 120 (207)
Q Consensus 90 ~~l~l~~N~l~~~~p~~--~~~~~l~~~~~~~n 120 (207)
+.+++..| ++ .++.. ... .+..+.+.+|
T Consensus 326 ~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 326 TQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CEEEECTT-CC-EECTTSSSSS-CCCEEEECCS
T ss_pred cEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCC
Confidence 99999665 44 23322 222 5566666665
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.20 E-value=0.00072 Score=55.87 Aligned_cols=104 Identities=10% Similarity=0.119 Sum_probs=73.9
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCC-----CCCchhhhc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS-----GNIPQQLSE 85 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~-----~~~p~~~~~ 85 (207)
+..+.+|+.+++..| ++..-...|.+ .+|+.+.+ .+.++..-+..|.++++|+.+++.+|.+. ...+..|..
T Consensus 222 F~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~ 298 (401)
T 4fdw_A 222 FLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG 298 (401)
T ss_dssp TTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT
T ss_pred hhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC
Confidence 456778999999875 56455666777 78999999 45566466788999999999999988765 344567899
Q ss_pred CCccceecCCCCcCcCCCCCCC--CCCCCCcccccC
Q 046642 86 LTSLEFFDVSDNLLTGPIPRGK--QFDTFGKSSFDG 119 (207)
Q Consensus 86 l~~L~~l~l~~N~l~~~~p~~~--~~~~l~~~~~~~ 119 (207)
+++|+.+++.++ ++ .++... ....+..+.+..
T Consensus 299 c~~L~~l~l~~~-i~-~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 299 CPKLARFEIPES-IR-ILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp CTTCCEECCCTT-CC-EECTTTTTTCCSCCEEEECT
T ss_pred CccCCeEEeCCc-eE-EEhhhhhcCCCCccEEEECc
Confidence 999999999844 55 344321 234455555533
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.57 E-value=0.00034 Score=51.18 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=55.2
Q ss_pred CCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCC-CCCCCchhhhcC----CccceecCCCCc-CcCC-CCCCCCCCC
Q 046642 39 KGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM-LSGNIPQQLSEL----TSLEFFDVSDNL-LTGP-IPRGKQFDT 111 (207)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l----~~L~~l~l~~N~-l~~~-~p~~~~~~~ 111 (207)
..|+.||++++.++..--..+..+++|+.|+|+++. ++..--..+..+ ++|+.|+++++. ++.. +.....++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999875545667899999999999995 653222235543 379999999974 5521 111123455
Q ss_pred CCcccccCC
Q 046642 112 FGKSSFDGN 120 (207)
Q Consensus 112 l~~~~~~~n 120 (207)
+..+++.+-
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 666666653
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.39 E-value=0.0012 Score=49.06 Aligned_cols=83 Identities=13% Similarity=0.218 Sum_probs=46.7
Q ss_pred ccccEEEccCC-CCCCC----CchhccCCCCCCEEECcCCcCCC----CCcccCCCCCCCCEEecCCCCCCCCC----ch
Q 046642 15 NLITAIILSNN-SFVGE----IPTSIANLKGLRNLDLSNNNLQG----RIPLSLSNLTAIESMDLSSNMLSGNI----PQ 81 (207)
Q Consensus 15 ~~L~~L~Ls~n-~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~----p~ 81 (207)
+.|+.|+|++| .|... +-..+..=+.|+.|+|++|.+.. .+-..+..=+.|+.|+|++|.|...- -+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 35777777774 65421 22334444667777787777752 12223334466777777777776311 11
Q ss_pred hhhcCCccceecCCCC
Q 046642 82 QLSELTSLEFFDVSDN 97 (207)
Q Consensus 82 ~~~~l~~L~~l~l~~N 97 (207)
.+..-..|+.|++++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 2334456777777654
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.08 E-value=0.006 Score=49.90 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=31.5
Q ss_pred hccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCC
Q 046642 34 SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDN 97 (207)
Q Consensus 34 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N 97 (207)
.|..+.+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++..-...|.++.+|+.+++..|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 3445555666655443 33233445555566666666433 43233345555566666655544
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.02 E-value=0.017 Score=47.12 Aligned_cols=104 Identities=11% Similarity=0.261 Sum_probs=60.7
Q ss_pred hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642 12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF 91 (207)
Q Consensus 12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 91 (207)
.....|+.+.+..+..+ .-...|.+++.|+.+.+.. .++......|.++.+|+.+++..+ ++..-...|.++.+|+.
T Consensus 262 ~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 44566777777655433 4455566777777777753 344344456777777777777654 44333456777777777
Q ss_pred ecCCCCcCcCCCCCC--CCCCCCCcccccCC
Q 046642 92 FDVSDNLLTGPIPRG--KQFDTFGKSSFDGN 120 (207)
Q Consensus 92 l~l~~N~l~~~~p~~--~~~~~l~~~~~~~n 120 (207)
+.+..+ ++ .+... .....|..+.+.++
T Consensus 339 i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 339 IAIPSS-VT-KIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEECTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred EEECcc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence 777544 33 33322 12344555555554
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.84 E-value=0.016 Score=46.94 Aligned_cols=83 Identities=11% Similarity=0.117 Sum_probs=56.6
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
....|+.+.+..+ ++..-...|.+..+|+.+.+..+ +.......|..+.+|+.+.+.++.++..-...|.++.+|+.+
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 4566777777655 44344556777778888887654 442444567778888888888777774445677788888888
Q ss_pred cCCCC
Q 046642 93 DVSDN 97 (207)
Q Consensus 93 ~l~~N 97 (207)
++..+
T Consensus 316 ~lp~~ 320 (379)
T 4h09_A 316 TLPTA 320 (379)
T ss_dssp ECCTT
T ss_pred EcCcc
Confidence 87654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.77 E-value=0.0019 Score=48.07 Aligned_cols=86 Identities=19% Similarity=0.127 Sum_probs=59.0
Q ss_pred cccccEEEccCCCCCCCC----chhccCCCCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCC---CC----C
Q 046642 14 SNLITAIILSNNSFVGEI----PTSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNML---SG----N 78 (207)
Q Consensus 14 l~~L~~L~Ls~n~i~~~~----p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l---~~----~ 78 (207)
-+.|+.|+|++|.|...- ...+..=+.|+.|+|++|.|... +-..+..-..|+.|+|++|.. .. .
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 356999999999997432 22333447899999999999732 223455567899999997643 21 1
Q ss_pred CchhhhcCCccceecCCCCcC
Q 046642 79 IPQQLSELTSLEFFDVSDNLL 99 (207)
Q Consensus 79 ~p~~~~~l~~L~~l~l~~N~l 99 (207)
+-..+..-++|+.|+++.|.+
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 223455667888898887654
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.41 E-value=0.05 Score=44.32 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=32.9
Q ss_pred ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642 15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV 94 (207)
Q Consensus 15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l 94 (207)
.+|+.+.+. +.++..-...|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++..-...|.++.+|+.+++
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 344444443 2233223333444444555544432 22222334444445555444332 33222334444445554444
Q ss_pred CCC
Q 046642 95 SDN 97 (207)
Q Consensus 95 ~~N 97 (207)
.++
T Consensus 365 ~~~ 367 (394)
T 4gt6_A 365 SGS 367 (394)
T ss_dssp SSC
T ss_pred CCc
Confidence 443
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.45 E-value=0.07 Score=43.05 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=49.2
Q ss_pred hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF 92 (207)
Q Consensus 13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 92 (207)
...+++.+.+..+ ++..-...|.+...|+.+.+..+ ++..-...|.+..+|+.+.+..+ ++......|..+.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 4455666655443 33244445666677777777655 33344456666777777777544 332333456667777777
Q ss_pred cCCCCcCc
Q 046642 93 DVSDNLLT 100 (207)
Q Consensus 93 ~l~~N~l~ 100 (207)
.+.++.++
T Consensus 292 ~l~~~~i~ 299 (379)
T 4h09_A 292 VMDNSAIE 299 (379)
T ss_dssp EECCTTCC
T ss_pred cccccccc
Confidence 77666555
No 164
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=94.34 E-value=0.016 Score=31.88 Aligned_cols=21 Identities=5% Similarity=0.173 Sum_probs=11.4
Q ss_pred eeehhhhHHHHHHHHHHHhhc
Q 046642 157 VVIGYASGTIIGVILGHIFST 177 (207)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~~~ 177 (207)
++.++++|+++++++++.++.
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~ 33 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGL 33 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHHHHHHH
Confidence 555666655555555554443
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.14 E-value=0.034 Score=45.32 Aligned_cols=84 Identities=11% Similarity=0.046 Sum_probs=66.6
Q ss_pred hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90 (207)
Q Consensus 11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 90 (207)
+....+|+.+.+..+ ++..-...|.++++|+.+++..+ ++..-..+|.++.+|+.+++..| ++..-...|.++.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 446778999998765 66455677899999999999755 66455678999999999999877 6645556899999999
Q ss_pred eecCCCC
Q 046642 91 FFDVSDN 97 (207)
Q Consensus 91 ~l~l~~N 97 (207)
.+++..+
T Consensus 370 ~i~lp~~ 376 (394)
T 4fs7_A 370 KVELPKR 376 (394)
T ss_dssp EEEEEGG
T ss_pred EEEECCC
Confidence 9988654
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=92.66 E-value=0.017 Score=31.73 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=10.8
Q ss_pred eeehhhhHHHHHHHHHHHhhc
Q 046642 157 VVIGYASGTIIGVILGHIFST 177 (207)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~~~ 177 (207)
++.+++.|+++++++++.++.
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~ 32 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAV 32 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHHHHH
Confidence 555555555555555544443
No 167
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=88.96 E-value=0.086 Score=28.84 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHhhcc
Q 046642 162 ASGTIIGVILGHIFSTR 178 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~ 178 (207)
++|+++++++++.++.|
T Consensus 18 vVGvll~vi~~l~~~~~ 34 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGIL 34 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33344444444444433
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=83.76 E-value=0.35 Score=25.54 Aligned_cols=6 Identities=17% Similarity=0.063 Sum_probs=2.2
Q ss_pred hhhhHH
Q 046642 160 GYASGT 165 (207)
Q Consensus 160 ~~~~~~ 165 (207)
|+++++
T Consensus 15 GiVvG~ 20 (38)
T 2k1k_A 15 AVIFGL 20 (38)
T ss_dssp HHHHHH
T ss_pred eeehHH
Confidence 333333
No 169
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=83.14 E-value=0.36 Score=25.79 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=6.2
Q ss_pred eeehhhhHHHHHH
Q 046642 157 VVIGYASGTIIGV 169 (207)
Q Consensus 157 ~~i~~~~~~~~~~ 169 (207)
+++++++|+++.+
T Consensus 15 I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 15 VIGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHH
Confidence 4444455554444
No 170
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=78.70 E-value=0.41 Score=26.16 Aligned_cols=8 Identities=0% Similarity=0.106 Sum_probs=3.0
Q ss_pred HHHHHhhc
Q 046642 170 ILGHIFST 177 (207)
Q Consensus 170 ~~~~~~~~ 177 (207)
.+++++++
T Consensus 28 ~~~~~~~R 35 (44)
T 2l2t_A 28 LTFAVYVR 35 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33333333
No 171
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=70.77 E-value=3.3 Score=21.03 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhcchhh
Q 046642 165 TIIGVILGHIFSTRKYE 181 (207)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (207)
++++++++..+++||.|
T Consensus 17 ~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 17 VVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCceeEEEccc
Confidence 34444555555555443
No 172
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=68.55 E-value=2 Score=26.66 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=8.2
Q ss_pred eeehhhhHHHHHHHHHHHh
Q 046642 157 VVIGYASGTIIGVILGHIF 175 (207)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~ 175 (207)
+++|++++++++.++++++
T Consensus 13 Iv~gvi~gilliGllllli 31 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLI 31 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4445555544433333333
No 173
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=64.04 E-value=4.1 Score=23.19 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=11.5
Q ss_pred ceeeeehhhhHHHHHHHHHHHh
Q 046642 154 WKTVVIGYASGTIIGVILGHIF 175 (207)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~~~~~ 175 (207)
+..+++++++|++++.+++++.
T Consensus 12 ~wiIi~svl~GLllL~li~~~L 33 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556655555554444
No 174
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=60.36 E-value=1.4 Score=22.67 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 046642 165 TIIGVILG 172 (207)
Q Consensus 165 ~~~~~~~~ 172 (207)
++++++++
T Consensus 17 lll~vii~ 24 (35)
T 1iij_A 17 VLLFLILV 24 (35)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 33333333
No 175
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=59.74 E-value=6.3 Score=22.39 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=11.2
Q ss_pred eeeeehhhhHHHHHHHHHHHh
Q 046642 155 KTVVIGYASGTIIGVILGHIF 175 (207)
Q Consensus 155 ~~~~i~~~~~~~~~~~~~~~~ 175 (207)
..+++++++|++++++++++.
T Consensus 10 WiIi~svl~GLLLL~Lii~~L 30 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILAL 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555566655555554444
No 176
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=57.76 E-value=1.5 Score=25.95 Aligned_cols=10 Identities=30% Similarity=0.697 Sum_probs=4.0
Q ss_pred eehhhhHHHH
Q 046642 158 VIGYASGTII 167 (207)
Q Consensus 158 ~i~~~~~~~~ 167 (207)
++|.++++++
T Consensus 13 vlGg~~~lll 22 (70)
T 2klu_A 13 VLGGVAGLLL 22 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHHHHH
Confidence 4444444333
No 177
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.46 E-value=26 Score=22.30 Aligned_cols=47 Identities=21% Similarity=0.139 Sum_probs=26.4
Q ss_pred CCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCC
Q 046642 25 NSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72 (207)
Q Consensus 25 n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~ 72 (207)
..++..-...|.++++|+.+.+..+--. .-...|.++.+|+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcC
Confidence 3444444555666667776666554322 3445566666666666654
No 178
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=46.84 E-value=9.2 Score=20.48 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=11.8
Q ss_pred ceeeeehhhhHHHHHHHHHHHh
Q 046642 154 WKTVVIGYASGTIIGVILGHIF 175 (207)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~~~~~ 175 (207)
+..+++++++|++++.+++++.
T Consensus 10 ~wiIi~s~l~GLllL~li~~~L 31 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAM 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566665555555544
No 179
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.54 E-value=37 Score=21.60 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=31.2
Q ss_pred cCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCC
Q 046642 50 NLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSD 96 (207)
Q Consensus 50 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~ 96 (207)
.++..-...|.++.+|+.+.+..+- +..-...|.++.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 3444455678888888888887653 324455777888888777654
No 180
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=44.31 E-value=12 Score=20.10 Aligned_cols=7 Identities=0% Similarity=0.197 Sum_probs=2.8
Q ss_pred eehhhhH
Q 046642 158 VIGYASG 164 (207)
Q Consensus 158 ~i~~~~~ 164 (207)
+.|++++
T Consensus 13 v~gvi~~ 19 (43)
T 2k9j_B 13 LLSVMGA 19 (43)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 181
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=43.46 E-value=23 Score=20.96 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=6.7
Q ss_pred hhhhHHHHHHHHHHHhh
Q 046642 160 GYASGTIIGVILGHIFS 176 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ 176 (207)
|++++++++++-+++++
T Consensus 21 GLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 21 GLIFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHH
Confidence 34444444433333333
No 182
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=33.72 E-value=30 Score=20.85 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHHHHHhhc
Q 046642 160 GYASGTIIGVILGHIFST 177 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (207)
|++++++++++-+++++.
T Consensus 23 GLifA~vLfi~GI~iilS 40 (74)
T 2zxe_G 23 GLIVAAVLCVIGIIILLA 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHc
Confidence 444444444443334433
No 183
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=33.04 E-value=17 Score=28.73 Aligned_cols=16 Identities=19% Similarity=0.588 Sum_probs=7.1
Q ss_pred HHHHHHHHhhcchhhH
Q 046642 167 IGVILGHIFSTRKYEW 182 (207)
Q Consensus 167 ~~~~~~~~~~~~~~~w 182 (207)
++++++.+++.+|++|
T Consensus 323 ~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 323 VVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3333344444445555
No 184
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=32.24 E-value=34 Score=20.39 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=6.3
Q ss_pred hhhhHHHHHHHHHHHh
Q 046642 160 GYASGTIIGVILGHIF 175 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~ 175 (207)
|++++++++++-++++
T Consensus 20 GLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 20 GLVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 3444444433333333
No 185
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=31.05 E-value=19 Score=18.11 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=3.9
Q ss_pred ehhhhHHHHH
Q 046642 159 IGYASGTIIG 168 (207)
Q Consensus 159 i~~~~~~~~~ 168 (207)
.|++++.+++
T Consensus 10 aGIVvgdi~~ 19 (33)
T 2l34_A 10 AGIVVGDLVL 19 (33)
T ss_dssp HHHHHHHHHH
T ss_pred EeEeHHHHHH
Confidence 3444443333
No 186
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=28.88 E-value=24 Score=28.19 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhcchhhH
Q 046642 165 TIIGVILGHIFSTRKYEW 182 (207)
Q Consensus 165 ~~~~~~~~~~~~~~~~~w 182 (207)
++++++++.+++.+|++|
T Consensus 345 ~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 345 VMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 334444444555556666
No 187
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=28.29 E-value=12 Score=33.89 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred ehhhhHHHHHHHHHHHh
Q 046642 159 IGYASGTIIGVILGHIF 175 (207)
Q Consensus 159 i~~~~~~~~~~~~~~~~ 175 (207)
+++++++++++++++++
T Consensus 708 i~il~~~~~ll~~~ll~ 724 (880)
T 1q55_A 708 LVILGSVLALLILFLLL 724 (880)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444443333333
No 188
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=21.91 E-value=35 Score=17.83 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=9.3
Q ss_pred eeehhhhHHHHHHHHHHHh
Q 046642 157 VVIGYASGTIIGVILGHIF 175 (207)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~ 175 (207)
++++.+++..+..++.+++
T Consensus 11 Wlvgtv~G~~vi~~~giFf 29 (40)
T 3arc_J 11 WIVATVAGMGVIVIVGLFF 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred EeeeeehhhhhhheeeEEE
Confidence 4455555554444444443
No 189
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=21.77 E-value=46 Score=25.15 Aligned_cols=19 Identities=16% Similarity=0.656 Sum_probs=9.4
Q ss_pred HHHHHHHHhhcchhhHHHH
Q 046642 167 IGVILGHIFSTRKYEWLAK 185 (207)
Q Consensus 167 ~~~~~~~~~~~~~~~w~~~ 185 (207)
++++.+++++.+|+.|+.-
T Consensus 212 L~il~~l~y~~kr~~W~~v 230 (241)
T 1pp9_D 212 MGLLLPLVYAMKRHKWSVL 230 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3334444444555666643
No 190
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=21.64 E-value=53 Score=17.84 Aligned_cols=13 Identities=23% Similarity=0.578 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHh
Q 046642 163 SGTIIGVILGHIF 175 (207)
Q Consensus 163 ~~~~~~~~~~~~~ 175 (207)
.++++++++.+.+
T Consensus 26 G~aVLgV~v~i~v 38 (46)
T 2ifo_A 26 GGAVLTVMVGIKV 38 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 191
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=21.07 E-value=42 Score=25.70 Aligned_cols=9 Identities=33% Similarity=0.619 Sum_probs=3.6
Q ss_pred hhcchhhHH
Q 046642 175 FSTRKYEWL 183 (207)
Q Consensus 175 ~~~~~~~w~ 183 (207)
++.+|+.|+
T Consensus 246 y~~kr~~W~ 254 (263)
T 2yiu_B 246 YLTNKKLWQ 254 (263)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 333344444
No 192
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=20.12 E-value=65 Score=24.41 Aligned_cols=20 Identities=10% Similarity=0.306 Sum_probs=10.0
Q ss_pred HHHHHHHHhhcchhhHHHHH
Q 046642 167 IGVILGHIFSTRKYEWLAKT 186 (207)
Q Consensus 167 ~~~~~~~~~~~~~~~w~~~~ 186 (207)
++++.++.++.+|+.|+.-+
T Consensus 216 L~il~~l~y~~kr~~W~~vk 235 (248)
T 3cx5_D 216 LSSLYLLSIWVKKFKWAGIK 235 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcc
Confidence 33344444445566666544
Done!