BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046644
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 29/221 (13%)
Query: 26 KEKRKYSKENSPTNNARFGSSFVLHAERALEWKD-FLSMFYVSEEEIAAFWPSVCKD--- 81
+EK KY+ + + +GS +A LEW+D F + Y E+ + WP D
Sbjct: 108 EEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIE 167
Query: 82 EMLEYTKS------------SEGLNV------KRIDEIRALMLLGSRRVNLNYYPMCPNP 123
EY K S GL + K + + L+L ++ +NYYP CP P
Sbjct: 168 ATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLL----QMKINYYPKCPQP 223
Query: 124 EHTVGVGRHSDISTFTILLQDDIGGLHVRKDNGNGWIHVSLISRSFIINIWDPLQIISKG 183
E +GV H+D+S T +L + + GL + + W+ + S +++I D L+I+S G
Sbjct: 224 ELALGVEAHTDVSALTFILHNMVPGLQLFYE--GKWVTAKCVPDSIVMHIGDTLEILSNG 281
Query: 184 RHKSIEYCVIANGSQNMILVLLFVN-PKPEGILCPFPEVLA 223
++KSI + + N + I +F PK + +L P PE+++
Sbjct: 282 KYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVS 322
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 29/221 (13%)
Query: 26 KEKRKYSKENSPTNNARFGSSFVLHAERALEWKD-FLSMFYVSEEEIAAFWPSVCKD--- 81
+EK KY+ + + +GS +A LEW+D F + Y E+ + WP D
Sbjct: 107 EEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIE 166
Query: 82 EMLEYTKS------------SEGLNV------KRIDEIRALMLLGSRRVNLNYYPMCPNP 123
EY K S GL + K + + L+L ++ +NYYP CP P
Sbjct: 167 ATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLL----QMKINYYPKCPQP 222
Query: 124 EHTVGVGRHSDISTFTILLQDDIGGLHVRKDNGNGWIHVSLISRSFIINIWDPLQIISKG 183
E +GV H+D+S T +L + + GL + + W+ + S +++I D L+I+S G
Sbjct: 223 ELALGVEAHTDVSALTFILHNMVPGLQLFYE--GKWVTAKCVPDSIVMHIGDTLEILSNG 280
Query: 184 RHKSIEYCVIANGSQNMILVLLFVN-PKPEGILCPFPEVLA 223
++KSI + + N + I +F PK + +L P PE+++
Sbjct: 281 KYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVS 321
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 21/217 (9%)
Query: 26 KEKRKYSKENSPTNNARFGSSFVLHAERALEWKD-FLSMFYVSEEEIAAFWPSVCKD--- 81
+EK KY+ + + +GS +A LEW+D F + Y E+ + WP D
Sbjct: 108 EEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIE 167
Query: 82 EMLEYTKSSEGLNVKRIDEIRALMLLGSRRV--------------NLNYYPMCPNPEHTV 127
EY K L K + + L R+ +NYYP CP PE +
Sbjct: 168 ATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELAL 227
Query: 128 GVGRHSDISTFTILLQDDIGGLHVRKDNGNGWIHVSLISRSFIINIWDPLQIISKGRHKS 187
GV H+D+S T +L + + GL + + W+ + S + +I D L+I+S G++KS
Sbjct: 228 GVEAHTDVSALTFILHNXVPGLQLFYE--GKWVTAKCVPDSIVXHIGDTLEILSNGKYKS 285
Query: 188 IEYCVIANGSQNMILVLLFVN-PKPEGILCPFPEVLA 223
I + + N + I +F PK + +L P PE ++
Sbjct: 286 ILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVS 322
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 117 YPMCPNPEHTVGVGRHSDISTFTILLQDD-IGGLHVRKDNGNGWIHVSLISRSFIINIWD 175
YP CP P+ G+ H+D +L QDD + GL + KD WI V S ++N+ D
Sbjct: 162 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQ--WIDVPPXRHSIVVNLGD 219
Query: 176 PLQIISKGRHKSIEYCVIANGSQNMILVLLFVNPKPEGILCPFPEVL 222
L++I+ G++KS+ + VIA + F NP + ++ P P ++
Sbjct: 220 QLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALV 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 114 LNYYPMCPNPEH-TVGVGRHSDISTFTILLQDDIGGLHVRKDNGNGWIHVSLISRSFIIN 172
L+Y P + E + H DI+ T+L + GL V+ +G+ W+ V + IIN
Sbjct: 155 LHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGS-WLDVPSDFGNIIIN 213
Query: 173 IWDPLQIISKGRHKSIEYCVI----ANGSQNMILVLLFVNPKPEGILC 216
I D LQ S G S + VI + +++ I + LF++P P +L
Sbjct: 214 IGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLS 261
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 108 GSRRVNLNYYPMCPNPEHTVGVGRHSDISTFTILLQDDIGGLHVRKDNGNGWIHVSLISR 167
G+ + L +YP P V G H DI+T T+LL + GGL V +G W+ ++
Sbjct: 167 GNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQ-WLPINPPPG 225
Query: 168 SFIINIWDPLQIIS 181
+INI D L+ ++
Sbjct: 226 CLVINIGDXLERLT 239
>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt
Length = 230
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 143 QDDIGGLHVRKDNGNGWIHVSLIS 166
Q D GG RKDN + WI V ++S
Sbjct: 176 QGDSGGPMFRKDNADEWIQVGIVS 199
>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With
Benzamidine
Length = 223
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 QDDIGGLHVRKDNGNGWIHVSLISRSF 169
Q D GG RKDN + WI V ++S +
Sbjct: 169 QGDSGGPMFRKDNADEWIQVGIVSWGY 195
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 143 QDDIGGLHVRKDNGNGWIHVSLIS 166
Q D GG RKDN + WI V ++S
Sbjct: 169 QGDSGGPMFRKDNADEWIQVGIVS 192
>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin
At 1.7 Angstroms Resolution
Length = 223
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 QDDIGGLHVRKDNGNGWIHVSLISRSF 169
Q D GG RKDN + WI V ++S +
Sbjct: 169 QGDSGGPMFRKDNADEWIQVGIVSWGY 195
>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin
Length = 222
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 143 QDDIGGLHVRKDNGNGWIHVSLIS 166
Q D GG RKDN + WI V ++S
Sbjct: 168 QGDSGGPMFRKDNADEWIQVGIVS 191
>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt
Length = 229
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 143 QDDIGGLHVRKDNGNGWIHVSLIS 166
Q D GG RKDN + W+ V ++S
Sbjct: 175 QGDSGGPMFRKDNADEWVQVGIVS 198
>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
pdb|3BEU|B Chain B, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
Length = 224
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 143 QDDIGGLHVRKDNGNGWIHVSLIS 166
Q D GG RKDN + W+ V ++S
Sbjct: 170 QGDSGGPMFRKDNADEWVQVGIVS 193
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 132 HSDISTFTILLQDDIGGLHVRKDNGNGWIHVSLISRSFIINIWDPLQIISKGRHKSIEYC 191
H D+S T+L Q ++ L V + G+ + ++IN + ++ +K+ +
Sbjct: 214 HEDVSLITVLYQSNVQNLQV--ETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR 271
Query: 192 VIANGSQNMILVLLFVNPKPEGILCPFPEVLANGK 226
V ++ L FVN + ++ PF NGK
Sbjct: 272 VKWVNAERQSLP-FFVNLGYDSVIDPFDPREPNGK 305
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 132 HSDISTFTILLQDDIGGLHVRKDNGNGWIHVSLISRSFIINIWDPLQIISKGRHKSIEYC 191
H D+S T+L Q ++ L V + G+ + ++IN + ++ +K+ +
Sbjct: 214 HEDVSLITVLYQSNVQNLQV--ETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR 271
Query: 192 VIANGSQNMILVLLFVNPKPEGILCPFPEVLANGK 226
V ++ L FVN + ++ PF NGK
Sbjct: 272 VKWVNAERQSLP-FFVNLGYDSVIDPFDPREPNGK 305
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 60 FLSMFYVSEEEIAAFWPSVCKDEMLE---YTKSSEGLNVKRIDEIR 102
F+ YVS E + +W ++ KD + E Y + EG ++ ID ++
Sbjct: 196 FIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQ 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,422,659
Number of Sequences: 62578
Number of extensions: 301691
Number of successful extensions: 483
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 20
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)