BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046651
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 118/252 (46%), Gaps = 69/252 (27%)
Query: 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGS 66
TL+IDNYDS+ YNI Q + + G P+V+RNDE + + I E D ++ISPGPG+
Sbjct: 4 TLIIDNYDSFVYNIAQIVGEL-GSYPIVIRNDEISIKGI-----ERIDPDRLIISPGPGT 57
Query: 67 PACPEDIGICLRVLLECWD-VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGD 125
P EDIG+ L V+ PILGVCLGHQA+G+ GA I A + HG++S I+
Sbjct: 58 PEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNII---- 113
Query: 126 RLFHDIP----SGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEI 181
L ++ P G FK RYHSL++D P I
Sbjct: 114 -LVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRPL------------------------I 148
Query: 182 PDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241
DA ++ + +M I H P YGVQFHPES+
Sbjct: 149 VDAISAEDNE-----------------------------IMAIHHEEYPIYGVQFHPESV 179
Query: 242 ATCYGSKILRNF 253
T G KIL NF
Sbjct: 180 GTSLGYKILYNF 191
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 68/247 (27%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
LL+DN DS+TYN+ +L +G V+ RN I R + E +++SPGPG+P
Sbjct: 5 LLLDNVDSFTYNLVDQLRA-SGHQVVIYRNQIGAEVIIERLQHMEQPV--LMLSPGPGTP 61
Query: 68 ACPEDIGICLRVLLECW--DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGD 125
+ + G C+ LL+ +PI+G+CLGHQA+ +G + A E +HG+ S I H+G+
Sbjct: 62 S---EAG-CMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGE 117
Query: 126 RLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAY 185
+F +G + V RYHSL+ IP
Sbjct: 118 GMF----AGMANPLPVARYHSLV-----------------------------GSNIP--- 141
Query: 186 QSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCY 245
+D++ + G ++ +R R G QFHPESI T +
Sbjct: 142 ----------ADLTVNARFGEMVMAVRDDRRRV-------------CGFQFHPESILTTH 178
Query: 246 GSKILRN 252
G+++L
Sbjct: 179 GARLLEQ 185
>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 192
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
LL+DN DS+T+N+ +L T NG V+ RN I R +N +++SPGPG P
Sbjct: 4 LLLDNIDSFTWNLADQLRT-NGHNVVIYRNHIPAQTLIDRLATMKNPV--LMLSPGPGVP 60
Query: 68 A---CPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNG 124
+ C ++ LR +PI+G+CLGHQA+ +G + A E +HG+ + I H+G
Sbjct: 61 SEAGCMPELLTRLR-----GKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKATSIEHDG 115
Query: 125 DRLFHDIPSGQNSGFKVVRYHSLI 148
+F +G + V RYHSL+
Sbjct: 116 QAMF----AGLANPLPVARYHSLV 135
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 100/266 (37%), Gaps = 71/266 (26%)
Query: 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGP 64
++ ++DN +T+ ++ L + GV +V ND + E + D +V+S G
Sbjct: 14 LKIYVVDNGGQWTHREWRVLREL-GVDTKIVPNDIDS--------SELDGLDGLVLSGG- 63
Query: 65 GSPACPEDIGICLRV--LLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVH 122
+P E++ V ++ + PILG+C+G Q + GA +V A P G+ V
Sbjct: 64 -APNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVX 122
Query: 123 NGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIP 182
+ + +F LP E+ W N D L P
Sbjct: 123 HSENIF-----------------------GGLPSEI--TVWENHNDEIINL--------P 149
Query: 183 DAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242
D + + S + Q++ G H TRP Y QFHPE
Sbjct: 150 DDF------TLAASSATCQVQ-------------------GFYHKTRPIYATQFHPEVEH 184
Query: 243 TCYGSKILRNFREITEDYWKRLRSPF 268
T YG I RNF I Y + + F
Sbjct: 185 TQYGRDIFRNFIGICASYREIQKENF 210
>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 382
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 56 DNIVISPGPGSPACPEDIGI-CLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVH 114
D I +S GPG PA P+D I ++ LE D+P+ G+CLGHQ L GA V
Sbjct: 234 DGIFLSNGPGDPA-PDDYAITAIQKFLET-DIPVFGICLGHQLLALASGAKTV------- 284
Query: 115 GRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKEL 158
++ H G+ D+ +N + H +D +LP L
Sbjct: 285 -KMKFGHHGGNHPVKDVE--KNVVMITAQNHGFAVDEATLPANL 325
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 1 KLEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60
+L R L++D D +T I Q+LS++ V +D D+ RY D +V+
Sbjct: 443 ELSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAV---DLARY-------DVVVM 492
Query: 61 SPGPGSPACPEDIGIC-----LRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHG 115
PGPG P+ D I LR L++ P + VCL HQ L + G +V P G
Sbjct: 493 GPGPGDPSDAGDPRIARLYAWLRHLIDEGK-PFMAVCLSHQILNAILGIPLVRREVPNQG 551
Query: 116 RLSEIVHNGDR 126
EI G R
Sbjct: 552 IQVEIDLFGQR 562
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 56 DNIVISPGPGSPACPEDIGI-CLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVH 114
D I +S GPG PA P D I ++ LE D+P+ G+CLGHQ L GA V
Sbjct: 234 DGIFLSNGPGDPA-PCDYAITAIQKFLET-DIPVFGICLGHQLLALASGAKTV------- 284
Query: 115 GRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKEL 158
++ H G+ D+ +N + H +D +LP L
Sbjct: 285 -KMKFGHHGGNHPVKDVE--KNVVMITAQNHGFAVDEATLPANL 325
>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 382
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 56 DNIVISPGPGSPACPEDIGI-CLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVH 114
D I +S GPG PA P D I ++ LE D+P+ G+CLGHQ L GA V
Sbjct: 234 DGIFLSNGPGDPA-PCDYAITAIQKFLET-DIPVFGICLGHQLLALASGAKTV------- 284
Query: 115 GRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKEL 158
++ H G+ D+ +N + H +D +LP L
Sbjct: 285 -KMKFGHHGGNHPVKDVE--KNVVMITAQNHGFAVDEATLPANL 325
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 98/255 (38%), Gaps = 79/255 (30%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFD--NIVISPGPG 65
+++DN Y + I++ L + GV ++ N L E A + I+ S GP
Sbjct: 4 VIMDNGGQYVHRIWRTLRYL-GVETKIIPN--------TTPLEEIKAMNPKGIIFSGGPS 54
Query: 66 SPACPEDIGICLRVL--LECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN 123
E+ G C +VL + ++VPILG+CLGHQ + G + GR
Sbjct: 55 L----ENTGNCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKV--------GR------- 95
Query: 124 GDRLFHDIPSGQNSGFKVVRYHSLIIDA--DSLPKELIPIAWSNSADGFSYLGTLQSGEI 181
G+ + + +V + LPK L W + D + E+
Sbjct: 96 ----------GEKAEYSLVEIEIIDEXEIFKGLPKRL--KVWESHMD--------EVKEL 135
Query: 182 PDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241
P + KIL + I+ + H P YGVQFHPE
Sbjct: 136 PPKF------KILARSETXPIE-------------------AMKHEELPIYGVQFHPEVA 170
Query: 242 ATCYGSKILRNFREI 256
T G +ILRNF ++
Sbjct: 171 HTEKGEEILRNFAKL 185
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 99/255 (38%), Gaps = 79/255 (30%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFD--NIVISPGPG 65
+++DN Y + I++ L + GV ++ N L E A + I+ S GP
Sbjct: 24 VIMDNGGQYVHRIWRTLRYL-GVETKIIPNT--------TPLEEIKAMNPKGIIFSGGPS 74
Query: 66 SPACPEDIGICLRVL--LECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN 123
E+ G C +VL + ++VPILG+CLGHQ + G + GR
Sbjct: 75 L----ENTGNCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKV--------GR------- 115
Query: 124 GDRLFHDIPSGQNSGFKVVRYHSLIIDA--DSLPKELIPIAWSNSADGFSYLGTLQSGEI 181
G+ + + +V + D LPK L W + D + E+
Sbjct: 116 ----------GEKAEYSLVEIEIIDEDEIFKGLPKRL--KVWESHMD--------EVKEL 155
Query: 182 PDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241
P + KIL + I+ + H P YGVQFHPE
Sbjct: 156 PPKF------KILARSETCPIE-------------------AMKHEELPIYGVQFHPEVA 190
Query: 242 ATCYGSKILRNFREI 256
T G +ILRNF ++
Sbjct: 191 HTEKGEEILRNFAKL 205
>pdb|3R75|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R75|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R76|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
pdb|3R76|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
Length = 645
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 1 KLEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60
+L R L++D D +T I Q+LS++ V +D D+ RY D +V+
Sbjct: 443 ELSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAV---DLARY-------DVVVM 492
Query: 61 SPGPGSPACPEDIGIC-----LRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHG 115
PGPG P+ D I LR L++ P + V L HQ L + G +V P G
Sbjct: 493 GPGPGDPSDAGDPRIARLYAWLRHLIDEGK-PFMAVXLSHQILNAILGIPLVRREVPNQG 551
Query: 116 RLSEIVHNGDR 126
EI G R
Sbjct: 552 IQVEIDLFGQR 562
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
Length = 382
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 56 DNIVISPGPGSPACPEDIGI-CLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVH 114
D I +S GPG PA P D I ++ LE D+P+ G+ LGHQ L GA V
Sbjct: 234 DGIFLSNGPGDPA-PCDYAITAIQKFLET-DIPVFGISLGHQLLALASGAKTV------- 284
Query: 115 GRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKEL 158
++ H G+ D+ +N + H +D +LP L
Sbjct: 285 -KMKFGHHGGNHPVKDVE--KNVVMITAQNHGFAVDEATLPANL 325
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 379
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 56 DNIVISPGPGSPACPEDIGI-CLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVH 114
D I +S GPG PA P D I ++ LE D+P+ G+ LGHQ L GA V
Sbjct: 233 DGIFLSNGPGDPA-PCDYAITAIQKFLET-DIPVFGIXLGHQLLALASGAKTV------- 283
Query: 115 GRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKEL 158
++ H G+ D+ +N + H +D +LP L
Sbjct: 284 -KMKFGHHGGNHPVKDVE--KNVVMITAQNHGFAVDEATLPANL 324
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
Length = 382
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 56 DNIVISPGPGSPACPEDIGI-CLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVH 114
D I +S GPG PA P D I ++ LE D+P+ G+ LGHQ L GA V
Sbjct: 234 DGIFLSNGPGDPA-PCDYAITAIQKFLET-DIPVFGIXLGHQLLALASGAKTV------- 284
Query: 115 GRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKEL 158
++ H G+ D+ +N + H +D +LP L
Sbjct: 285 -KMKFGHHGGNHPVKDVE--KNVVMITAQNHGFAVDEATLPANL 325
>pdb|3L7N|A Chain A, Crystal Structure Of Smu.1228c
Length = 236
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Query: 55 FDNIVISPGPGSPACPE------DIGICLRVLLECW--DVPILGVCLGHQALGFVHGADI 106
FD +++ GP SP+ + D ++++ + + I+GVCLG Q +G +GAD
Sbjct: 46 FDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADY 105
Query: 107 VHAPE 111
+H+P+
Sbjct: 106 LHSPK 110
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 232 YGVQFHPESIATCYGSKILRNFREIT 257
YGVQFHPE T G +IL NF E+
Sbjct: 159 YGVQFHPEVAHTPKGXQILENFLELA 184
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 232 YGVQFHPESIATCYGSKILRNFREIT 257
YGVQFHPE T G +IL NF E+
Sbjct: 159 YGVQFHPEVAHTPKGMQILENFLELA 184
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 220 VLMGIMHSTRPHYGVQFHPESIATCYGSKILRNF 253
++ GI + ++ YG QFHPE T G IL+NF
Sbjct: 172 IVAGIANESKKLYGAQFHPEVGLTENGKVILKNF 205
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 220 VLMGIMHSTRPHYGVQFHPESIATCYGSKILRNF 253
++ GI + ++ YG QFHPE T G IL+NF
Sbjct: 177 IVAGIANESKKLYGAQFHPEVGLTENGKVILKNF 210
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 85/248 (34%), Gaps = 59/248 (23%)
Query: 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG 65
R L++D YT + + + + V + W W D+ + I++S GP
Sbjct: 9 RILILDFGSQYTQLVARRVRELG------VYCELWAW-DVTEAQIRDFNPSGIILSGGPE 61
Query: 66 SPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGD 125
S E+ + + E VP+ GVC G Q + G + + E G V N
Sbjct: 62 S-TTEENSPRAPQYVFEA-GVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDS 119
Query: 126 RLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAY 185
L I + AD P L+ + W + D + IP
Sbjct: 120 ALVRGIEDA--------------LTADGKP--LLDV-WMSHGDKVT--------AIP--- 151
Query: 186 QSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCY 245
SD T S +I +N +R YGVQFHPE T
Sbjct: 152 ----------SDFITVASTESCPFAIMANEEKR------------FYGVQFHPEVTHTRQ 189
Query: 246 GSKILRNF 253
G ++L F
Sbjct: 190 GMRMLERF 197
>pdb|4GUD|A Chain A, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
pdb|4GUD|B Chain B, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
Length = 211
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Query: 231 HYGVQFHPESIATCYGSKILRNFREI 256
+YGVQFHPE ++ G+++++NF E+
Sbjct: 179 YYGVQFHPER-SSKAGARLIQNFLEL 203
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 151 ADSLPKELI----PIAWSNSADGFSYLGTLQSGEIPDAYQS--QSRQKIL-------LSD 197
D+ P +L+ I WS D GTLQ +I + QS Q+ Q IL L D
Sbjct: 444 VDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQD 503
Query: 198 ISTQIKNGSYRHSIYSNRMRREVL 221
+S Q K + H I +R+V+
Sbjct: 504 LSAQ-KRKKFEHLITELVHQRDVV 526
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 151 ADSLPKELI----PIAWSNSADGFSYLGTLQSGEIPDAYQS--QSRQKIL-------LSD 197
D+ P +L+ I WS D GTLQ +I + QS Q+ Q IL L D
Sbjct: 444 VDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQD 503
Query: 198 ISTQIKNGSYRHSIYSNRMRREVL 221
+S Q K + H I +R+V+
Sbjct: 504 LSAQ-KRKKFEHLITELVHQRDVV 526
>pdb|3CNF|T Chain T, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
Length = 1057
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSY 207
+++AD + + LIP++ S + +G L E + SR LS Q+ + Y
Sbjct: 250 LVEADRVVQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSR----LSTALLQLSDTYY 305
Query: 208 RHSIYSNRMRREVLMGIMHSTRPHYGVQFHPE 239
+H +N R + + + +R Y Q H E
Sbjct: 306 QH---ANDQLRRLYRRMYNDSRTLYMTQRHQE 334
>pdb|3J17|A Chain A, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1058
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSY 207
+++AD + + LIP++ S + +G L E + SR LS Q+ + Y
Sbjct: 250 LVEADRVIQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSR----LSTALLQLSDTYY 305
Query: 208 RHSIYSNRMRREVLMGIMHSTRPHYGVQFHPE 239
+H +N R + + + +R Y Q H E
Sbjct: 306 QH---ANDQLRRLYRRMYNDSRTLYMTQRHQE 334
>pdb|3IZ3|A Chain A, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZX|A Chain A, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1058
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSY 207
+++AD + + LIP++ S + +G L E + SR LS Q+ + Y
Sbjct: 250 LVEADRVIQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSR----LSTALLQLSDTYY 305
Query: 208 RHSIYSNRMRREVLMGIMHSTRPHYGVQFHPE 239
+H +N R + + + +R Y Q H E
Sbjct: 306 QH---ANDQLRRLYRRMYNDSRTLYMTQRHQE 334
>pdb|2DIQ|A Chain A, Solution Structure Of The Tudor Domain Of Tudor And Kh
Domain Containing Protein
Length = 110
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 101 VHGADIVHAPEPVHG-----RLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLP 155
VH DIV AP P +G R+ + NG+ + + G N + +L D SLP
Sbjct: 33 VHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLP 92
Query: 156 KELIPIAWSNSADGFS 171
+ I + + A G S
Sbjct: 93 FQAIECSLARIASGPS 108
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|B Chain B, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|C Chain C, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|D Chain D, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control
Length = 796
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 238 PESIAT--CYGSKILRNFREITEDYWKRLRSPFVKERNVHYTGAESLLLREITRTSRSVN 295
P +AT + + + R +E D W+R R + R HY AE L+ R + ++
Sbjct: 24 PADLATDRKFWTGLSRAVQERIADDWERTREAYGAARQQHYFSAEFLMGRALLNNLTNLG 83
Query: 296 NSDELGREALRPRQLFCDLGD 316
DE A R+L +L D
Sbjct: 84 LVDE---AAAATRELGHELTD 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,493,587
Number of Sequences: 62578
Number of extensions: 545449
Number of successful extensions: 1219
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 42
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)