Query 046651
Match_columns 392
No_of_seqs 248 out of 1749
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:02:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02889 oxo-acid-lyase/anthra 100.0 4.2E-69 9.1E-74 587.2 34.6 375 2-383 79-459 (918)
2 KOG1224 Para-aminobenzoate (PA 100.0 2.4E-62 5.2E-67 497.9 17.7 307 3-387 13-321 (767)
3 COG0512 PabA Anthranilate/para 100.0 5.7E-59 1.2E-63 427.5 22.1 188 5-256 2-190 (191)
4 PRK08007 para-aminobenzoate sy 100.0 6E-48 1.3E-52 355.2 22.8 185 6-255 1-186 (187)
5 KOG0026 Anthranilate synthase, 100.0 2.2E-47 4.9E-52 342.5 17.6 193 6-262 20-219 (223)
6 PRK07649 para-aminobenzoate/an 100.0 3.6E-45 7.7E-50 339.3 23.3 188 6-258 1-189 (195)
7 PRK06774 para-aminobenzoate sy 100.0 9.9E-45 2.1E-49 333.6 23.1 189 6-255 1-190 (191)
8 TIGR01823 PabB-fungal aminodeo 100.0 9.4E-44 2E-48 385.3 30.6 203 3-264 4-211 (742)
9 TIGR00566 trpG_papA glutamine 100.0 4.4E-44 9.4E-49 329.6 23.4 186 6-255 1-187 (188)
10 CHL00101 trpG anthranilate syn 100.0 5.1E-43 1.1E-47 322.8 21.9 187 6-257 1-189 (190)
11 PRK08857 para-aminobenzoate sy 100.0 7.7E-43 1.7E-47 322.1 22.9 191 6-256 1-192 (193)
12 PRK06895 putative anthranilate 100.0 1.8E-42 4E-47 318.6 22.5 186 4-256 1-188 (190)
13 PLN02335 anthranilate synthase 100.0 5E-42 1.1E-46 324.3 23.6 191 5-260 19-216 (222)
14 PRK05670 anthranilate synthase 100.0 7.9E-42 1.7E-46 313.9 22.6 187 6-257 1-188 (189)
15 PRK09522 bifunctional glutamin 100.0 6.7E-42 1.5E-46 359.1 22.2 187 5-259 2-192 (531)
16 PRK05637 anthranilate synthase 100.0 7.4E-41 1.6E-45 313.7 22.4 191 5-257 2-205 (208)
17 PRK07765 para-aminobenzoate sy 100.0 7.1E-39 1.5E-43 301.1 23.5 191 5-258 1-193 (214)
18 PRK14607 bifunctional glutamin 100.0 3.3E-38 7E-43 331.8 21.2 189 6-259 1-191 (534)
19 cd01743 GATase1_Anthranilate_S 100.0 5.9E-37 1.3E-41 279.7 22.2 182 7-254 1-184 (184)
20 PRK00758 GMP synthase subunit 100.0 1.4E-36 3.1E-41 277.4 20.7 183 6-260 1-184 (184)
21 cd01742 GATase1_GMP_Synthase T 100.0 4.4E-36 9.6E-41 272.1 19.5 181 7-254 1-181 (181)
22 TIGR00888 guaA_Nterm GMP synth 100.0 2.7E-35 5.9E-40 269.8 22.7 182 7-255 1-182 (188)
23 PF00117 GATase: Glutamine ami 100.0 1.4E-35 2.9E-40 270.6 17.3 185 8-255 1-190 (192)
24 TIGR01815 TrpE-clade3 anthrani 100.0 6.5E-35 1.4E-39 314.9 23.9 191 3-258 515-709 (717)
25 PLN02347 GMP synthetase 100.0 2.8E-34 6.1E-39 301.7 24.6 191 5-258 11-204 (536)
26 PRK13566 anthranilate synthase 100.0 1.9E-34 4.1E-39 311.6 23.6 189 3-258 525-719 (720)
27 PRK00074 guaA GMP synthase; Re 100.0 9.7E-32 2.1E-36 281.6 23.5 186 5-257 4-190 (511)
28 PRK12564 carbamoyl phosphate s 100.0 1.1E-31 2.4E-36 270.1 21.3 179 4-256 177-359 (360)
29 cd01744 GATase1_CPSase Small c 100.0 1.2E-31 2.6E-36 244.4 19.4 174 7-254 1-178 (178)
30 CHL00197 carA carbamoyl-phosph 100.0 3.3E-31 7.2E-36 268.1 21.5 182 4-260 192-377 (382)
31 TIGR01368 CPSaseIIsmall carbam 100.0 4E-31 8.7E-36 265.9 20.8 180 5-258 174-357 (358)
32 PRK12838 carbamoyl phosphate s 100.0 7.5E-31 1.6E-35 263.5 21.4 182 4-259 167-352 (354)
33 PRK13170 hisH imidazole glycer 100.0 1.1E-30 2.4E-35 242.1 17.8 175 5-256 1-196 (196)
34 PLN02771 carbamoyl-phosphate s 100.0 1.2E-29 2.5E-34 258.4 19.2 168 5-246 241-410 (415)
35 cd01748 GATase1_IGP_Synthase T 100.0 2.2E-29 4.7E-34 232.6 16.8 174 7-254 1-198 (198)
36 COG0518 GuaA GMP synthase - Gl 100.0 3E-29 6.5E-34 233.9 17.2 186 5-257 2-194 (198)
37 PRK13146 hisH imidazole glycer 100.0 7.3E-29 1.6E-33 232.3 18.0 181 4-257 1-208 (209)
38 CHL00188 hisH imidazole glycer 100.0 1.5E-28 3.3E-33 230.9 17.9 180 4-255 1-208 (210)
39 PRK13181 hisH imidazole glycer 100.0 2.2E-28 4.9E-33 226.4 17.1 176 7-256 2-199 (199)
40 PRK13152 hisH imidazole glycer 100.0 3.9E-28 8.4E-33 225.5 17.5 174 7-255 2-200 (201)
41 PRK13141 hisH imidazole glycer 100.0 1.1E-27 2.4E-32 222.5 17.8 179 6-258 1-203 (205)
42 PRK11366 puuD gamma-glutamyl-g 100.0 1.3E-27 2.8E-32 230.2 18.5 184 20-262 31-249 (254)
43 PRK13143 hisH imidazole glycer 100.0 3.5E-27 7.5E-32 219.1 18.8 180 5-258 1-199 (200)
44 COG0505 CarA Carbamoylphosphat 100.0 2.4E-27 5.2E-32 234.9 18.6 185 4-261 179-366 (368)
45 TIGR01855 IMP_synth_hisH imida 99.9 6E-27 1.3E-31 216.9 17.5 176 7-256 1-196 (196)
46 PRK06490 glutamine amidotransf 99.9 3.8E-26 8.2E-31 218.4 20.6 177 3-255 6-191 (239)
47 cd01745 GATase1_2 Subgroup of 99.9 6.8E-27 1.5E-31 215.4 14.3 154 13-254 17-189 (189)
48 PRK14004 hisH imidazole glycer 99.9 7.1E-26 1.5E-30 212.8 17.9 178 7-256 2-209 (210)
49 cd01741 GATase1_1 Subgroup of 99.9 2E-25 4.3E-30 203.7 17.3 175 6-254 1-188 (188)
50 PRK09065 glutamine amidotransf 99.9 2.2E-25 4.7E-30 212.6 16.9 173 11-255 18-198 (237)
51 COG0118 HisH Glutamine amidotr 99.9 3.9E-25 8.4E-30 205.1 18.0 180 4-257 1-203 (204)
52 PRK07567 glutamine amidotransf 99.9 2.4E-24 5.3E-29 206.2 19.7 170 5-240 1-192 (242)
53 PRK05665 amidotransferase; Pro 99.9 1.2E-23 2.7E-28 201.3 19.7 185 4-255 2-202 (240)
54 PRK07053 glutamine amidotransf 99.9 2.5E-23 5.5E-28 198.4 21.0 178 5-254 3-189 (234)
55 PRK13525 glutamine amidotransf 99.9 2.5E-23 5.4E-28 192.1 18.6 172 4-258 1-188 (189)
56 PRK08250 glutamine amidotransf 99.9 4.1E-23 8.9E-28 196.9 19.2 179 5-255 1-192 (235)
57 PRK13527 glutamine amidotransf 99.9 3.1E-23 6.8E-28 192.4 17.9 176 7-257 5-197 (200)
58 cd01746 GATase1_CTP_Synthase T 99.9 7.2E-24 1.5E-28 202.4 12.7 186 8-254 11-235 (235)
59 cd01747 GATase1_Glutamyl_Hydro 99.9 6.4E-23 1.4E-27 199.8 16.3 174 20-246 25-220 (273)
60 KOG1622 GMP synthase [Nucleoti 99.9 1.2E-22 2.6E-27 205.4 11.4 189 5-258 17-206 (552)
61 PRK13142 hisH imidazole glycer 99.9 1.4E-21 2.9E-26 181.8 16.7 167 7-256 2-187 (192)
62 TIGR01737 FGAM_synth_I phospho 99.9 4.7E-21 1E-25 181.7 16.6 201 5-256 1-226 (227)
63 PLN02617 imidazole glycerol ph 99.9 1.7E-20 3.6E-25 197.8 21.2 181 4-258 6-211 (538)
64 PF07722 Peptidase_C26: Peptid 99.8 3.3E-20 7.2E-25 174.9 16.1 159 19-239 28-217 (217)
65 COG2071 Predicted glutamine am 99.8 6.5E-20 1.4E-24 174.4 16.9 180 18-260 29-241 (243)
66 KOG0370 Multifunctional pyrimi 99.8 3.5E-20 7.7E-25 199.1 16.7 187 2-263 170-358 (1435)
67 PRK05380 pyrG CTP synthetase; 99.8 6.9E-20 1.5E-24 191.5 15.0 197 4-260 288-529 (533)
68 TIGR00337 PyrG CTP synthase. C 99.8 4.5E-19 9.8E-24 185.3 16.7 191 4-255 289-524 (525)
69 PRK06186 hypothetical protein; 99.8 2E-18 4.3E-23 164.4 13.4 192 5-258 2-227 (229)
70 TIGR03800 PLP_synth_Pdx2 pyrid 99.8 1.7E-17 3.8E-22 152.9 15.2 169 6-255 1-184 (184)
71 PLN02327 CTP synthase 99.7 1.9E-17 4.1E-22 173.7 15.7 196 4-260 297-549 (557)
72 PRK03619 phosphoribosylformylg 99.7 3.9E-17 8.5E-22 154.3 16.2 193 5-255 1-218 (219)
73 KOG3179 Predicted glutamine sy 99.7 3.2E-17 7E-22 152.2 11.3 161 13-240 23-194 (245)
74 cd01749 GATase1_PB Glutamine A 99.7 1.8E-16 4E-21 145.5 15.1 133 7-166 3-153 (183)
75 PRK05368 homoserine O-succinyl 99.6 2.5E-15 5.4E-20 148.6 15.5 174 4-240 35-238 (302)
76 COG0504 PyrG CTP synthase (UTP 99.6 6.3E-15 1.4E-19 151.7 12.4 198 5-262 289-531 (533)
77 PLN02832 glutamine amidotransf 99.6 4.8E-14 1E-18 136.0 16.5 83 4-102 1-89 (248)
78 PRK01175 phosphoribosylformylg 99.5 6.9E-13 1.5E-17 128.9 16.8 93 3-101 2-105 (261)
79 COG0047 PurL Phosphoribosylfor 99.4 4.2E-12 9.1E-17 120.3 17.1 202 4-256 2-229 (231)
80 cd01740 GATase1_FGAR_AT Type 1 99.4 2.2E-12 4.8E-17 123.3 15.3 201 7-252 1-236 (238)
81 KOG0623 Glutamine amidotransfe 99.3 1.2E-11 2.7E-16 122.7 14.0 178 7-255 4-206 (541)
82 PRK13526 glutamine amidotransf 99.3 7.2E-11 1.6E-15 109.0 15.9 167 5-255 3-178 (179)
83 KOG2387 CTP synthase (UTP-ammo 99.2 3.7E-11 8E-16 122.5 9.8 49 53-103 362-410 (585)
84 KOG1559 Gamma-glutamyl hydrola 99.1 1.9E-10 4.1E-15 110.0 7.7 171 23-246 84-276 (340)
85 PF13507 GATase_5: CobB/CobQ-l 98.9 1.3E-08 2.7E-13 99.2 10.4 92 4-101 1-106 (259)
86 TIGR01857 FGAM-synthase phosph 98.9 9E-08 1.9E-12 109.5 18.8 211 3-255 976-1237(1239)
87 cd03131 GATase1_HTS Type 1 glu 98.7 2.7E-08 5.9E-13 91.7 6.5 106 53-162 61-174 (175)
88 COG0311 PDX2 Predicted glutami 98.7 3.9E-07 8.5E-12 84.4 13.7 176 5-258 1-191 (194)
89 PLN03206 phosphoribosylformylg 98.6 1.1E-06 2.3E-11 101.5 17.1 93 3-101 1036-1142(1307)
90 PF01174 SNO: SNO glutamine am 98.5 1.8E-07 4E-12 86.8 7.2 159 22-257 13-186 (188)
91 TIGR01735 FGAM_synt phosphorib 98.5 3.6E-06 7.8E-11 97.5 18.2 208 3-255 1054-1308(1310)
92 PRK05297 phosphoribosylformylg 98.5 5.4E-06 1.2E-10 96.2 17.9 93 3-101 1034-1140(1290)
93 PF04204 HTS: Homoserine O-suc 98.4 2.5E-06 5.3E-11 84.7 11.3 110 53-166 97-215 (298)
94 cd01750 GATase1_CobQ Type 1 gl 98.2 2.5E-06 5.4E-11 79.2 6.2 82 7-102 1-89 (194)
95 PHA03366 FGAM-synthase; Provis 98.1 4.6E-05 1E-09 88.6 16.0 92 3-101 1027-1133(1304)
96 TIGR01001 metA homoserine O-su 98.0 2.8E-05 6.1E-10 77.1 10.1 109 53-166 98-215 (300)
97 PRK06278 cobyrinic acid a,c-di 97.8 6.5E-05 1.4E-09 79.2 8.9 81 5-102 1-82 (476)
98 cd03130 GATase1_CobB Type 1 gl 97.8 4.8E-05 1E-09 71.0 6.2 72 19-102 15-92 (198)
99 TIGR01739 tegu_FGAM_synt herpe 97.7 0.00062 1.3E-08 79.0 14.7 91 4-101 929-1034(1202)
100 cd01653 GATase1 Type 1 glutami 97.7 0.00024 5.1E-09 55.6 8.0 85 9-98 3-92 (115)
101 cd03128 GAT_1 Type 1 glutamine 97.6 0.00024 5.3E-09 53.0 6.6 76 18-98 15-92 (92)
102 PRK00784 cobyric acid synthase 97.2 0.00042 9E-09 73.2 5.8 87 4-102 251-342 (488)
103 cd03146 GAT1_Peptidase_E Type 97.1 0.00067 1.5E-08 63.9 5.1 89 4-101 31-130 (212)
104 KOG3210 Imidazoleglycerol-phos 97.0 0.0031 6.8E-08 58.2 8.1 65 29-102 40-108 (226)
105 COG1492 CobQ Cobyric acid synt 97.0 0.0014 3.1E-08 69.0 6.6 84 4-101 251-341 (486)
106 PRK11780 isoprenoid biosynthes 96.8 0.0098 2.1E-07 56.7 10.1 50 53-102 84-145 (217)
107 PRK01077 cobyrinic acid a,c-di 96.8 0.0033 7.2E-08 65.7 7.5 87 5-102 246-339 (451)
108 cd03169 GATase1_PfpI_1 Type 1 96.7 0.0047 1E-07 56.1 7.3 47 54-101 76-124 (180)
109 TIGR01382 PfpI intracellular p 96.6 0.0069 1.5E-07 53.8 6.9 47 54-101 60-108 (166)
110 cd03133 GATase1_ES1 Type 1 glu 96.5 0.011 2.4E-07 56.2 8.5 51 53-103 81-143 (213)
111 TIGR00379 cobB cobyrinic acid 96.3 0.0087 1.9E-07 62.7 6.7 84 5-102 245-338 (449)
112 cd03134 GATase1_PfpI_like A ty 96.2 0.017 3.7E-07 51.2 7.1 47 54-101 62-110 (165)
113 COG1897 MetA Homoserine trans- 96.1 0.022 4.7E-07 55.8 8.0 116 41-166 91-216 (307)
114 cd03147 GATase1_Ydr533c_like T 96.1 0.019 4.1E-07 55.1 7.6 49 53-101 93-143 (231)
115 TIGR00313 cobQ cobyric acid sy 96.0 0.0077 1.7E-07 63.6 4.7 84 5-102 248-336 (475)
116 PF07685 GATase_3: CobB/CobQ-l 96.0 0.0059 1.3E-07 54.9 3.2 49 53-102 6-59 (158)
117 cd03144 GATase1_ScBLP_like Typ 95.7 0.017 3.7E-07 50.0 4.7 42 53-98 43-90 (114)
118 cd03132 GATase1_catalase Type 95.2 0.044 9.6E-07 47.6 5.9 77 19-101 19-111 (142)
119 cd03135 GATase1_DJ-1 Type 1 gl 95.2 0.069 1.5E-06 46.9 7.1 89 7-101 3-109 (163)
120 PRK11574 oxidative-stress-resi 95.1 0.13 2.8E-06 47.2 8.9 49 53-101 65-115 (196)
121 KOG1907 Phosphoribosylformylgl 95.1 0.34 7.4E-06 54.6 13.3 194 4-242 1058-1286(1320)
122 PRK04155 chaperone protein Hch 94.9 0.077 1.7E-06 52.7 7.4 50 52-101 145-196 (287)
123 PF01965 DJ-1_PfpI: DJ-1/PfpI 94.8 0.0086 1.9E-07 52.7 0.1 56 41-101 29-87 (147)
124 PRK13896 cobyrinic acid a,c-di 94.7 0.043 9.3E-07 57.5 5.1 83 5-102 234-325 (433)
125 cd03148 GATase1_EcHsp31_like T 94.6 0.11 2.4E-06 49.9 7.4 49 53-101 95-145 (232)
126 COG0693 ThiJ Putative intracel 94.2 0.21 4.5E-06 45.4 7.8 50 53-102 65-116 (188)
127 cd03141 GATase1_Hsp31_like Typ 93.6 0.1 2.2E-06 49.5 4.7 49 53-101 89-139 (221)
128 PRK05282 (alpha)-aspartyl dipe 93.4 0.11 2.5E-06 50.1 4.8 90 4-102 31-130 (233)
129 cd03140 GATase1_PfpI_3 Type 1 92.7 0.62 1.3E-05 41.8 8.3 47 53-101 59-107 (170)
130 cd03138 GATase1_AraC_2 AraC tr 92.7 0.22 4.8E-06 45.4 5.4 49 53-101 68-120 (195)
131 TIGR01383 not_thiJ DJ-1 family 92.4 0.15 3.3E-06 45.6 3.9 49 53-101 62-112 (179)
132 cd03129 GAT1_Peptidase_E_like 91.6 0.59 1.3E-05 43.6 7.1 92 4-101 29-130 (210)
133 cd03137 GATase1_AraC_1 AraC tr 90.9 0.56 1.2E-05 42.3 6.0 48 53-101 63-112 (187)
134 PRK11104 hemG protoporphyrinog 89.7 1.9 4.2E-05 39.5 8.5 82 5-94 1-87 (177)
135 COG3442 Predicted glutamine am 87.7 0.34 7.3E-06 46.8 2.1 72 23-101 28-103 (250)
136 cd03136 GATase1_AraC_ArgR_like 87.5 1.2 2.6E-05 40.3 5.5 47 53-101 63-111 (185)
137 cd03139 GATase1_PfpI_2 Type 1 87.2 1.2 2.6E-05 39.8 5.4 48 53-101 61-110 (183)
138 PRK11249 katE hydroperoxidase 86.5 1.2 2.5E-05 50.0 5.8 97 4-101 597-707 (752)
139 PF13278 DUF4066: Putative ami 86.3 0.64 1.4E-05 41.3 3.0 48 53-101 60-109 (166)
140 PF06283 ThuA: Trehalose utili 83.6 6.4 0.00014 36.7 8.6 143 6-165 1-161 (217)
141 PF03358 FMN_red: NADPH-depend 83.0 1.9 4.2E-05 37.5 4.5 83 5-94 1-115 (152)
142 COG4090 Uncharacterized protei 82.9 2.5 5.3E-05 37.9 5.0 47 53-101 84-130 (154)
143 PF09825 BPL_N: Biotin-protein 82.7 3.3 7.1E-05 42.8 6.7 86 5-96 1-93 (367)
144 PF06490 FleQ: Flagellar regul 82.3 1.7 3.7E-05 36.9 3.8 75 6-91 1-75 (109)
145 PRK01911 ppnK inorganic polyph 81.9 3.5 7.6E-05 41.2 6.4 78 5-95 1-98 (292)
146 COG4126 Hydantoin racemase [Am 81.5 13 0.00029 36.0 9.8 94 5-107 1-113 (230)
147 PRK03708 ppnK inorganic polyph 79.7 4.4 9.5E-05 40.1 6.2 81 5-95 1-90 (277)
148 PF00072 Response_reg: Respons 77.8 5.2 0.00011 31.9 5.1 77 7-92 1-78 (112)
149 PRK03372 ppnK inorganic polyph 77.0 6.7 0.00015 39.5 6.7 79 5-95 6-106 (306)
150 PRK10816 DNA-binding transcrip 76.2 8.9 0.00019 34.5 6.7 79 5-92 1-79 (223)
151 PRK09393 ftrA transcriptional 75.2 6.1 0.00013 39.1 5.8 47 53-101 74-122 (322)
152 PRK00561 ppnK inorganic polyph 75.0 4.9 0.00011 39.6 5.0 65 5-95 1-67 (259)
153 PRK04539 ppnK inorganic polyph 74.1 11 0.00024 37.7 7.3 79 4-95 5-102 (296)
154 PRK09836 DNA-binding transcrip 72.3 13 0.00028 33.6 6.8 77 5-91 1-78 (227)
155 KOG2764 Putative transcription 72.0 11 0.00023 36.9 6.3 73 21-101 25-115 (247)
156 PRK10336 DNA-binding transcrip 72.0 13 0.00029 32.9 6.8 78 5-92 1-79 (219)
157 PRK02155 ppnK NAD(+)/NADH kina 71.5 12 0.00026 37.3 6.8 78 5-95 6-97 (291)
158 PRK14075 pnk inorganic polypho 69.3 10 0.00023 36.9 5.8 70 5-95 1-72 (256)
159 PRK09417 mogA molybdenum cofac 67.6 15 0.00033 34.6 6.3 92 3-99 2-107 (193)
160 smart00448 REC cheY-homologous 67.3 9.3 0.0002 23.9 3.6 50 5-60 1-50 (55)
161 cd00885 cinA Competence-damage 66.7 21 0.00045 32.7 6.9 84 14-104 18-104 (170)
162 PRK14077 pnk inorganic polypho 66.6 14 0.00031 36.7 6.2 75 5-95 11-98 (287)
163 cd00886 MogA_MoaB MogA_MoaB fa 65.6 12 0.00026 33.3 5.0 51 12-65 17-72 (152)
164 TIGR02667 moaB_proteo molybden 65.5 17 0.00037 33.0 6.1 52 13-65 20-74 (163)
165 COG0303 MoeA Molybdopterin bio 65.5 19 0.00041 37.7 7.1 73 13-90 201-275 (404)
166 PRK03767 NAD(P)H:quinone oxido 64.9 58 0.0012 30.1 9.6 33 5-37 2-39 (200)
167 COG1031 Uncharacterized Fe-S o 63.8 20 0.00044 38.3 6.9 87 5-94 1-109 (560)
168 TIGR02069 cyanophycinase cyano 62.9 34 0.00075 33.2 8.0 93 4-101 28-132 (250)
169 PRK11517 transcriptional regul 62.9 29 0.00064 30.9 7.1 78 5-92 1-78 (223)
170 CHL00148 orf27 Ycf27; Reviewed 62.7 30 0.00065 31.2 7.2 80 3-92 5-84 (240)
171 PRK10643 DNA-binding transcrip 62.5 27 0.00058 31.0 6.7 78 5-91 1-78 (222)
172 TIGR01755 flav_wrbA NAD(P)H:qu 62.1 52 0.0011 30.5 8.7 33 5-37 1-38 (197)
173 PRK06703 flavodoxin; Provision 62.0 38 0.00083 29.6 7.5 49 5-60 2-54 (151)
174 PRK03378 ppnK inorganic polyph 61.8 27 0.00059 34.8 7.2 78 5-95 6-97 (292)
175 PRK01185 ppnK inorganic polyph 60.8 21 0.00046 35.3 6.2 78 5-95 1-83 (271)
176 cd03145 GAT1_cyanophycinase Ty 60.4 62 0.0014 30.5 9.1 93 4-101 29-133 (217)
177 PRK11083 DNA-binding response 60.4 36 0.00077 30.3 7.2 80 4-92 3-82 (228)
178 PRK06242 flavodoxin; Provision 60.2 32 0.00068 29.8 6.6 47 5-60 1-49 (150)
179 PRK02649 ppnK inorganic polyph 59.2 23 0.0005 35.6 6.2 33 54-95 68-102 (305)
180 PRK04885 ppnK inorganic polyph 59.1 10 0.00022 37.4 3.6 64 5-95 1-71 (265)
181 PRK13435 response regulator; P 57.6 40 0.00086 28.4 6.6 87 2-96 3-89 (145)
182 TIGR00147 lipid kinase, YegS/R 56.6 65 0.0014 31.3 8.8 91 5-103 2-102 (293)
183 TIGR00177 molyb_syn molybdenum 55.9 25 0.00053 31.0 5.2 52 14-66 26-78 (144)
184 PRK15479 transcriptional regul 55.5 48 0.001 29.3 7.1 79 5-92 1-79 (221)
185 PRK02645 ppnK inorganic polyph 55.4 32 0.0007 34.4 6.5 80 4-95 3-92 (305)
186 COG3340 PepE Peptidase E [Amin 55.1 35 0.00076 33.0 6.3 75 14-94 48-127 (224)
187 PRK05568 flavodoxin; Provision 55.0 1.3E+02 0.0029 25.6 9.7 52 7-69 4-59 (142)
188 PRK01231 ppnK inorganic polyph 53.2 31 0.00067 34.5 6.0 77 6-95 6-96 (295)
189 TIGR00200 cinA_nterm competenc 53.0 36 0.00078 35.7 6.6 49 14-65 19-70 (413)
190 PRK09958 DNA-binding transcrip 51.7 41 0.00089 29.5 6.0 52 5-61 1-52 (204)
191 COG1214 Inactive homolog of me 51.2 18 0.0004 34.5 3.8 45 54-100 58-103 (220)
192 PRK09483 response regulator; P 51.1 43 0.00093 29.7 6.1 81 5-92 2-82 (217)
193 PF03575 Peptidase_S51: Peptid 51.1 16 0.00034 32.4 3.2 74 17-97 2-81 (154)
194 PRK09468 ompR osmolarity respo 50.3 54 0.0012 29.8 6.7 80 4-93 5-85 (239)
195 PRK09271 flavodoxin; Provision 49.3 87 0.0019 27.9 7.7 53 5-60 1-57 (160)
196 PRK03673 hypothetical protein; 48.9 58 0.0013 34.0 7.4 49 14-65 20-71 (396)
197 PRK10161 transcriptional regul 48.9 55 0.0012 29.4 6.5 78 5-92 3-83 (229)
198 cd00758 MoCF_BD MoCF_BD: molyb 48.5 31 0.00068 29.8 4.6 50 13-65 17-69 (133)
199 PRK13015 3-dehydroquinate dehy 47.8 1.5E+02 0.0032 27.0 8.8 61 4-66 1-79 (146)
200 PRK14076 pnk inorganic polypho 47.8 39 0.00084 36.8 6.1 79 4-95 290-382 (569)
201 PRK10680 molybdopterin biosynt 46.6 63 0.0014 33.8 7.2 52 13-65 202-254 (411)
202 PRK09267 flavodoxin FldA; Vali 46.4 63 0.0014 28.7 6.4 49 5-60 2-52 (169)
203 smart00852 MoCF_biosynth Proba 46.2 36 0.00077 29.3 4.6 50 13-65 16-68 (135)
204 PRK05395 3-dehydroquinate dehy 45.6 1.8E+02 0.004 26.4 9.1 59 5-65 2-78 (146)
205 PF09897 DUF2124: Uncharacteri 45.0 11 0.00023 34.3 1.1 40 54-93 80-119 (147)
206 PRK11914 diacylglycerol kinase 44.9 41 0.00089 33.0 5.3 65 2-68 6-78 (306)
207 COG1597 LCB5 Sphingosine kinas 44.7 1E+02 0.0022 30.7 8.2 63 4-68 2-72 (301)
208 PLN02935 Bifunctional NADH kin 44.7 57 0.0012 35.3 6.6 34 54-96 262-297 (508)
209 PRK06756 flavodoxin; Provision 44.4 1.3E+02 0.0028 26.1 7.9 49 5-60 2-55 (148)
210 PLN02929 NADH kinase 44.4 38 0.00082 34.2 5.0 58 20-95 39-97 (301)
211 PRK07116 flavodoxin; Provision 44.3 1.5E+02 0.0033 26.2 8.5 32 4-35 2-34 (160)
212 COG0796 MurI Glutamate racemas 43.7 1.9E+02 0.004 28.9 9.6 83 3-94 4-100 (269)
213 PRK13856 two-component respons 43.1 93 0.002 28.5 7.2 77 6-92 3-79 (241)
214 KOG2708 Predicted metalloprote 43.1 28 0.00061 34.3 3.7 57 53-113 69-127 (336)
215 PF02844 GARS_N: Phosphoribosy 42.8 33 0.00073 29.1 3.7 77 5-90 1-91 (100)
216 PRK13573 anthranilate synthase 42.6 36 0.00079 36.7 4.8 38 340-382 20-57 (503)
217 COG0745 OmpR Response regulato 42.1 82 0.0018 30.1 6.8 90 5-104 1-95 (229)
218 COG3199 Predicted inorganic po 42.1 58 0.0013 33.6 5.9 59 28-96 68-134 (355)
219 TIGR02154 PhoB phosphate regul 41.9 86 0.0019 27.6 6.5 78 5-92 3-83 (226)
220 PRK12359 flavodoxin FldB; Prov 41.7 1.5E+02 0.0032 27.4 8.1 53 5-68 1-55 (172)
221 PRK13059 putative lipid kinase 41.6 1.1E+02 0.0025 29.9 7.9 61 5-68 2-70 (295)
222 KOG1273 WD40 repeat protein [G 41.1 25 0.00055 36.0 3.1 21 220-241 99-119 (405)
223 PRK05569 flavodoxin; Provision 41.1 1.1E+02 0.0024 26.1 6.9 53 6-69 3-59 (141)
224 cd01422 MGS Methylglyoxal synt 40.6 1.6E+02 0.0034 25.1 7.6 70 17-89 33-105 (115)
225 COG0426 FpaA Uncharacterized f 40.2 84 0.0018 32.9 6.9 57 6-69 248-308 (388)
226 PRK13337 putative lipid kinase 40.1 1.7E+02 0.0036 28.8 8.8 62 5-68 2-71 (304)
227 PRK10651 transcriptional regul 40.0 94 0.002 27.1 6.4 83 3-92 5-87 (216)
228 PRK01372 ddl D-alanine--D-alan 39.8 1.1E+02 0.0024 29.7 7.4 77 5-92 5-89 (304)
229 cd05298 GH4_GlvA_pagL_like Gly 39.8 48 0.001 35.1 5.1 57 76-132 149-216 (437)
230 PRK11173 two-component respons 39.6 98 0.0021 28.2 6.7 79 4-92 3-81 (237)
231 PRK15029 arginine decarboxylas 39.5 1.1E+02 0.0024 34.8 8.1 81 5-92 1-92 (755)
232 PRK10766 DNA-binding transcrip 39.3 1.1E+02 0.0023 27.3 6.8 78 5-92 3-80 (221)
233 PRK14497 putative molybdopteri 38.9 59 0.0013 35.5 5.8 48 14-64 205-255 (546)
234 PRK10529 DNA-binding transcrip 38.8 1.1E+02 0.0025 27.2 6.9 77 5-91 2-78 (225)
235 PRK14690 molybdopterin biosynt 38.0 93 0.002 32.7 6.9 63 14-83 219-284 (419)
236 PRK15115 response regulator Gl 37.6 1E+02 0.0022 31.7 7.0 81 3-92 4-84 (444)
237 TIGR03725 bact_YeaZ universal 37.6 19 0.00042 33.5 1.6 44 54-101 54-100 (202)
238 PRK13055 putative lipid kinase 37.6 1.3E+02 0.0028 30.2 7.7 62 5-68 3-73 (334)
239 PRK15411 rcsA colanic acid cap 37.4 1.8E+02 0.0039 27.0 8.1 54 5-61 1-54 (207)
240 PRK03670 competence damage-ind 37.3 81 0.0018 30.9 6.0 49 14-65 19-71 (252)
241 PF00455 DeoRC: DeoR C termina 37.1 86 0.0019 28.2 5.7 78 7-92 22-101 (161)
242 COG0655 WrbA Multimeric flavod 36.5 1.7E+02 0.0037 27.1 7.8 62 14-82 13-100 (207)
243 COG0061 nadF NAD kinase [Coenz 36.4 85 0.0018 31.0 6.0 34 53-95 54-89 (281)
244 PRK01215 competence damage-ind 36.3 83 0.0018 31.0 5.9 80 14-100 22-104 (264)
245 PF00994 MoCF_biosynth: Probab 36.2 27 0.00059 30.4 2.3 84 13-104 15-102 (144)
246 cd04736 MDH_FMN Mandelate dehy 36.0 2.8E+02 0.006 28.8 9.8 93 15-112 222-320 (361)
247 PRK00421 murC UDP-N-acetylmura 35.8 1.7E+02 0.0037 30.5 8.5 59 5-64 8-76 (461)
248 cd00887 MoeA MoeA family. Memb 35.7 46 0.001 34.3 4.2 51 14-65 194-245 (394)
249 PF01220 DHquinase_II: Dehydro 35.2 1.3E+02 0.0028 27.2 6.4 60 5-66 1-78 (140)
250 PRK00549 competence damage-ind 35.2 91 0.002 32.6 6.3 49 14-65 19-70 (414)
251 PRK10840 transcriptional regul 34.6 1.9E+02 0.0042 26.1 7.8 83 4-92 3-87 (216)
252 COG0391 Uncharacterized conser 34.6 82 0.0018 32.2 5.7 45 43-93 181-229 (323)
253 PTZ00314 inosine-5'-monophosph 34.5 3.4E+02 0.0073 29.2 10.6 104 5-112 254-375 (495)
254 PRK10701 DNA-binding transcrip 34.5 1.5E+02 0.0033 26.9 7.1 78 5-92 2-79 (240)
255 PRK13558 bacterio-opsin activa 34.4 1E+02 0.0022 33.4 6.8 81 3-92 6-86 (665)
256 PRK09191 two-component respons 34.3 1.2E+02 0.0026 28.1 6.4 80 5-92 138-217 (261)
257 PRK10430 DNA-binding transcrip 34.2 1.7E+02 0.0036 27.2 7.4 82 5-92 2-84 (239)
258 smart00851 MGS MGS-like domain 34.0 2E+02 0.0043 22.9 6.9 66 20-89 22-89 (90)
259 PRK12555 chemotaxis-specific m 33.7 1.3E+02 0.0027 30.0 6.9 82 5-94 1-82 (337)
260 PRK09390 fixJ response regulat 33.3 1.7E+02 0.0037 24.9 6.9 80 3-92 2-82 (202)
261 PRK13837 two-component VirA-li 33.1 1.1E+02 0.0025 34.3 7.1 81 4-94 697-778 (828)
262 COG3706 PleD Response regulato 32.6 92 0.002 33.1 5.8 97 5-110 133-235 (435)
263 PF10087 DUF2325: Uncharacteri 32.3 2.8E+02 0.006 22.6 7.9 85 6-100 1-91 (97)
264 PRK10116 universal stress prot 32.1 1.6E+02 0.0035 24.7 6.4 60 28-91 76-137 (142)
265 PRK09935 transcriptional regul 31.8 1.9E+02 0.0041 25.1 7.0 82 4-92 3-84 (210)
266 PRK10365 transcriptional regul 31.7 1.7E+02 0.0036 29.9 7.5 81 3-92 4-84 (441)
267 PRK13054 lipid kinase; Reviewe 30.9 1.4E+02 0.0031 29.2 6.7 63 4-68 3-70 (300)
268 COG0771 MurD UDP-N-acetylmuram 30.4 2.1E+02 0.0046 30.5 8.1 59 4-64 7-79 (448)
269 PRK10923 glnG nitrogen regulat 30.3 1.7E+02 0.0037 30.3 7.4 81 3-92 2-82 (469)
270 PRK10610 chemotaxis regulatory 30.0 2.5E+02 0.0053 21.3 6.9 54 3-61 4-57 (129)
271 COG0521 MoaB Molybdopterin bio 29.9 1.6E+02 0.0034 27.4 6.2 47 19-67 31-80 (169)
272 TIGR01302 IMP_dehydrog inosine 29.8 3.8E+02 0.0082 28.3 9.9 102 5-110 237-356 (450)
273 PRK04761 ppnK inorganic polyph 29.7 41 0.00089 32.9 2.5 34 53-95 24-59 (246)
274 PRK10841 hybrid sensory kinase 29.6 1.3E+02 0.0029 34.6 7.0 80 4-93 801-881 (924)
275 PRK10569 NAD(P)H-dependent FMN 29.4 2.8E+02 0.0061 25.7 8.0 70 5-81 1-90 (191)
276 COG4285 Uncharacterized conser 29.2 2.1E+02 0.0046 28.0 7.1 53 55-112 50-104 (253)
277 TIGR01753 flav_short flavodoxi 29.0 1.7E+02 0.0038 24.4 6.1 39 15-60 10-51 (140)
278 PRK00742 chemotaxis-specific m 28.8 1.7E+02 0.0036 29.3 6.8 83 3-93 2-84 (354)
279 cd05565 PTS_IIB_lactose PTS_II 28.6 2.3E+02 0.0049 23.9 6.5 51 5-61 1-54 (99)
280 PRK02231 ppnK inorganic polyph 28.5 91 0.002 30.9 4.8 33 54-95 42-76 (272)
281 TIGR03787 marine_sort_RR prote 28.3 1.9E+02 0.0042 25.7 6.6 78 6-92 2-81 (227)
282 PRK03604 moaC bifunctional mol 28.2 95 0.0021 31.5 4.9 50 13-65 173-226 (312)
283 PRK11361 acetoacetate metaboli 27.9 1.7E+02 0.0038 29.9 6.9 79 5-92 5-83 (457)
284 COG2247 LytB Putative cell wal 27.7 1.3E+02 0.0028 31.0 5.6 58 8-67 30-88 (337)
285 PRK10046 dpiA two-component re 27.7 1.8E+02 0.0039 26.8 6.4 54 4-61 4-57 (225)
286 TIGR00288 conserved hypothetic 27.3 2.6E+02 0.0057 25.7 7.2 63 20-92 71-136 (160)
287 cd07186 CofD_like LPPG:FO 2-ph 27.3 89 0.0019 31.6 4.5 45 42-92 174-222 (303)
288 TIGR02990 ectoine_eutA ectoine 27.1 2.7E+02 0.0059 26.9 7.7 82 3-91 119-212 (239)
289 COG2185 Sbm Methylmalonyl-CoA 27.0 3.3E+02 0.0072 24.7 7.6 87 3-94 11-101 (143)
290 PF00781 DAGK_cat: Diacylglyce 27.0 57 0.0012 27.8 2.7 61 6-67 1-67 (130)
291 PRK14491 putative bifunctional 26.9 2E+02 0.0042 31.7 7.4 49 14-65 393-444 (597)
292 PLN02274 inosine-5'-monophosph 26.3 3.3E+02 0.0071 29.4 8.8 101 5-109 261-379 (505)
293 PRK15481 transcriptional regul 26.3 3.2E+02 0.007 27.9 8.6 58 7-69 167-226 (431)
294 PF01513 NAD_kinase: ATP-NAD k 26.2 30 0.00065 34.0 0.9 34 53-95 75-110 (285)
295 PRK06849 hypothetical protein; 26.0 2.1E+02 0.0045 29.0 7.0 81 4-93 4-85 (389)
296 TIGR03723 bact_gcp putative gl 26.0 42 0.00091 33.6 1.9 39 54-93 70-109 (314)
297 TIGR01088 aroQ 3-dehydroquinat 25.8 5E+02 0.011 23.5 8.6 52 13-66 21-77 (141)
298 KOG2707 Predicted metalloprote 25.8 86 0.0019 32.7 4.1 52 53-108 102-154 (405)
299 PRK14571 D-alanyl-alanine synt 25.5 3.8E+02 0.0082 26.0 8.5 76 5-90 1-84 (299)
300 PF00389 2-Hacid_dh: D-isomer 25.5 1.7E+02 0.0037 24.9 5.4 48 7-64 1-48 (133)
301 COG1797 CobB Cobyrinic acid a, 25.4 74 0.0016 33.9 3.6 86 5-102 246-340 (451)
302 COG2197 CitB Response regulato 25.3 4.5E+02 0.0097 24.5 8.7 53 5-61 1-53 (211)
303 COG1349 GlpR Transcriptional r 25.2 1.4E+02 0.003 28.9 5.4 80 5-92 92-173 (253)
304 PRK15347 two component system 24.9 1.5E+02 0.0032 33.2 6.1 80 4-93 690-774 (921)
305 PRK09257 aromatic amino acid a 24.7 2.8E+02 0.0062 27.9 7.7 53 17-69 129-186 (396)
306 PRK14569 D-alanyl-alanine synt 24.6 4.3E+02 0.0094 25.8 8.8 78 3-90 2-87 (296)
307 COG1440 CelA Phosphotransferas 24.4 2.5E+02 0.0054 24.1 6.0 51 5-61 2-55 (102)
308 COG4635 HemG Flavodoxin [Energ 24.4 1.3E+02 0.0029 28.0 4.6 49 5-60 1-53 (175)
309 PRK11466 hybrid sensory histid 24.3 1.9E+02 0.0041 32.5 6.9 80 4-91 681-760 (914)
310 PLN02727 NAD kinase 24.3 1.6E+02 0.0036 34.3 6.3 34 54-96 743-778 (986)
311 COG2204 AtoC Response regulato 24.1 2.1E+02 0.0047 30.7 6.8 82 5-96 5-86 (464)
312 KOG3974 Predicted sugar kinase 24.1 1.2E+02 0.0025 30.6 4.5 43 42-89 92-136 (306)
313 PTZ00340 O-sialoglycoprotein e 24.0 60 0.0013 33.4 2.6 48 53-101 69-119 (345)
314 COG4977 Transcriptional regula 23.8 1.7E+02 0.0038 29.9 5.9 48 53-101 75-124 (328)
315 COG0075 Serine-pyruvate aminot 23.8 4.1E+02 0.0089 27.8 8.7 55 5-61 81-138 (383)
316 PF12724 Flavodoxin_5: Flavodo 23.7 1.3E+02 0.0028 26.1 4.4 69 14-93 8-83 (143)
317 PRK15076 alpha-galactosidase; 23.2 1.7E+02 0.0036 30.9 5.8 56 77-132 154-218 (431)
318 PLN02699 Bifunctional molybdop 23.1 1.4E+02 0.0029 33.4 5.4 51 14-65 208-260 (659)
319 PRK06843 inosine 5-monophospha 23.1 5.2E+02 0.011 27.3 9.3 105 5-113 166-288 (404)
320 COG0716 FldA Flavodoxins [Ener 23.0 2.4E+02 0.0051 24.8 6.0 51 5-60 2-54 (151)
321 PRK10403 transcriptional regul 23.0 2.8E+02 0.0061 23.9 6.5 53 5-61 7-59 (215)
322 PF13941 MutL: MutL protein 22.9 3.7E+02 0.008 28.8 8.3 61 2-64 74-134 (457)
323 PRK09959 hybrid sensory histid 22.7 1.6E+02 0.0035 34.3 6.1 78 4-91 958-1036(1197)
324 PRK03094 hypothetical protein; 22.6 1.2E+02 0.0026 24.9 3.6 38 18-67 11-48 (80)
325 cd03825 GT1_wcfI_like This fam 22.2 1.8E+02 0.0039 27.7 5.5 52 5-61 1-58 (365)
326 PF03698 UPF0180: Uncharacteri 22.1 1.7E+02 0.0037 24.0 4.4 40 15-67 9-48 (80)
327 TIGR01387 cztR_silR_copR heavy 22.0 2.3E+02 0.0049 24.8 5.7 77 7-92 1-77 (218)
328 cd00532 MGS-like MGS-like doma 21.8 4.7E+02 0.01 21.8 7.7 68 19-89 33-103 (112)
329 PF00814 Peptidase_M22: Glycop 21.8 27 0.00059 34.1 -0.3 47 53-101 49-96 (268)
330 KOG0538 Glycolate oxidase [Ene 21.8 3.9E+02 0.0086 27.5 7.7 95 14-112 208-309 (363)
331 cd06271 PBP1_AglR_RafR_like Li 21.7 6.1E+02 0.013 23.0 9.6 70 14-91 15-88 (268)
332 TIGR01754 flav_RNR ribonucleot 21.7 3.2E+02 0.007 23.5 6.5 29 5-33 1-33 (140)
333 PRK11107 hybrid sensory histid 21.6 2.2E+02 0.0048 31.8 6.7 79 4-92 667-748 (919)
334 PLN02493 probable peroxisomal 21.5 7E+02 0.015 26.0 9.8 94 15-112 210-310 (367)
335 cd01567 NAPRTase_PncB Nicotina 21.4 4.6E+02 0.01 26.4 8.4 82 4-92 233-326 (343)
336 PRK11091 aerobic respiration c 21.3 2.1E+02 0.0046 31.6 6.4 80 4-93 525-608 (779)
337 TIGR01819 F420_cofD LPPG:FO 2- 21.3 68 0.0015 32.4 2.4 42 43-92 174-219 (297)
338 PRK10955 DNA-binding transcrip 21.1 4.2E+02 0.0092 23.4 7.4 77 5-92 2-78 (232)
339 PRK05567 inosine 5'-monophosph 21.1 4.8E+02 0.01 27.8 8.8 102 5-110 241-360 (486)
340 PRK05458 guanosine 5'-monophos 21.0 5.9E+02 0.013 26.0 9.0 101 6-110 113-230 (326)
341 PTZ00376 aspartate aminotransf 21.0 3.6E+02 0.0079 27.3 7.7 54 16-69 132-190 (404)
342 cd06295 PBP1_CelR Ligand bindi 20.7 4.5E+02 0.0097 24.2 7.7 35 28-63 39-73 (275)
343 PRK02610 histidinol-phosphate 20.7 5.5E+02 0.012 25.7 8.8 53 16-69 124-182 (374)
344 PRK10710 DNA-binding transcrip 20.6 3.8E+02 0.0082 23.9 7.0 78 5-92 11-88 (240)
345 TIGR01651 CobT cobaltochelatas 20.2 4.2E+02 0.0092 29.4 8.2 37 5-42 394-441 (600)
346 PF02056 Glyco_hydro_4: Family 20.1 1.3E+02 0.0027 28.3 3.7 52 6-65 30-84 (183)
No 1
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=100.00 E-value=4.2e-69 Score=587.17 Aligned_cols=375 Identities=67% Similarity=1.092 Sum_probs=298.6
Q ss_pred CCccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH
Q 046651 2 LEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL 81 (392)
Q Consensus 2 ~~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~ 81 (392)
+++||||||||||||||||+|+|++++|.+|+||+||+.+|+++..++++...||+||||||||+|.+++|++++.++|.
T Consensus 79 ~~~~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~ 158 (918)
T PLN02889 79 LEFVRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLL 158 (918)
T ss_pred cccceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHH
Confidence 46799999999999999999999998899999999999999998865445578999999999999999999999999998
Q ss_pred HcCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 82 ECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 82 ~~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
+..++||||||||||+|++++||+|.++++++||+.+.|.|+++.||+++|++.++.|+|+||||++|+..+||++|+++
T Consensus 159 ~~~~iPILGICLGhQ~i~~~~Gg~V~~~~~~~HG~~s~I~h~~~~lF~glp~~~~~~f~v~RYHSL~v~~~~lP~~L~~~ 238 (918)
T PLN02889 159 ECRDIPILGVCLGHQALGYVHGARIVHAPEPVHGRLSEIEHNGCRLFDDIPSGRNSGFKVVRYHSLVIDAESLPKELVPI 238 (918)
T ss_pred HhCCCcEEEEcHHHHHHHHhcCceEEeCCCceeeeeeeEeecCchhhcCCCcCCCCCceEEeCCCcccccCCCCCceEEE
Confidence 86689999999999999999999999999999999999999999999999985444599999999999877799999999
Q ss_pred EEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccc-cccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 162 AWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIY-SNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 162 Awt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
||+.+.++++|+++.+++..+.+.+.+.+.+.+.+|+++...+|..+.++| ...++..+||||+|+++|+|||||||||
T Consensus 239 A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~~GVQfHPES 318 (918)
T PLN02889 239 AWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPHYGLQFHPES 318 (918)
T ss_pred EEECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCceEEEEeCCcc
Confidence 999988899999999999888888888888999999999999999999999 5566667999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHhhhhcCCCcccccccccc--cch---hhhhHhhhhcccccCCCcccccccccccccccccC
Q 046651 241 IATCYGSKILRNFREITEDYWKRLRSPFVKERNVHYT--GAE---SLLLREITRTSRSVNNSDELGREALRPRQLFCDLG 315 (392)
Q Consensus 241 iat~~G~~I~~NF~~l~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (392)
++|++|.+||+||++++.+||+..+....++++...+ .+. ..++... +....+|+.+.+ ..++.++...
T Consensus 319 i~t~~G~~l~~nF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~ 392 (918)
T PLN02889 319 IATCYGRQIFKNFREITQDYWLRLRSTSLRRRNSNLTANMQVPDASQLFKVP-RRGQLGNGEDAL-----GNRELSRRAQ 392 (918)
T ss_pred ccCchhHHHHHHHHHHHHHHhhccCCCccccccccccccccccccccccccc-cccccccccccc-----cccccccccc
Confidence 9999999999999999999987655432232221100 000 0000000 000011111111 0111111111
Q ss_pred CCcccccccccccccccCCCceeeEEEEEEecccccccCChHHHHHHHhCCCCCCCeEEccCCCCCCC
Q 046651 316 DRRFGIQHSRRFEIQRSSIGVKCLKLTWRKFDHLASTVGGARNIFCELFGNNKAENTFWLDSSSTEKV 383 (392)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~f~~lf~~~~~~~~fWLDss~~~~~ 383 (392)
....+. -..+...+.++...+.+++.|++|+..+.++|++++|||+||+..+++++|||||+..+.+
T Consensus 393 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~if~~lf~~~~~~~~flLdSs~~~~~ 459 (918)
T PLN02889 393 LRGSVD-VFSLLNLSEPSSGVKFLKLKWRKFNKLAAQVGGARNIFCELFGKNKAENTFWLDSSSTEKK 459 (918)
T ss_pred cccccc-cccccccCCCCcccceeecceeecccccccccCHHHHHHHHHhccCCCCeEEEeCCCCCCC
Confidence 000000 0111223333335677999999999999999999999999999876789999999987543
No 2
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-62 Score=497.92 Aligned_cols=307 Identities=55% Similarity=0.964 Sum_probs=263.8
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
.++|||+|||||||||||||+|+.++|+++|++.+++|+|+|..++++++..||+||++||||+|.|++|+|||.+++++
T Consensus 13 ~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~rl~~~ 92 (767)
T KOG1224|consen 13 PRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLRLLLE 92 (767)
T ss_pred hheeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHHHHHh
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iA 162 (392)
|++|||||||||||+||.+|||.|+++++|.||+++.++|++.-+|.+||+++++.||++||||+.|++ +|.++.+++
T Consensus 93 ~~~iPilGICLGfQal~l~hGA~v~~~n~p~HGrvs~i~~~~~~~f~gi~sg~~~~fK~~RYHSL~in~--~pid~l~il 170 (767)
T KOG1224|consen 93 CRDIPILGICLGFQALGLVHGAHVVHANEPVHGRVSGIEHDGNILFSGIPSGRNSDFKVVRYHSLIINS--LPIDLLPIL 170 (767)
T ss_pred cCCCceeeeehhhHhHhhhcccceecCCCcccceeeeEEecCcEEEccCCCCCcccceeEEeEEEEecC--Cchhhhcce
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
|+.+. +++.++|+|+|++.||||+||||||++
T Consensus 171 ~t~~d------------------------------------------------dng~ilMsi~~~~fPhfG~qyHPES~~ 202 (767)
T KOG1224|consen 171 WTIYD------------------------------------------------DNGHILMSIMHSSFPHFGLQYHPESIA 202 (767)
T ss_pred eEeec------------------------------------------------CCceEEEEeeccCCCccceeeChHHhh
Confidence 98762 223499999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhhhhcCCCcccccccccccchhhhhHhhhhcccccCCCcccccccccccccccccCCCccccc
Q 046651 243 TCYGSKILRNFREITEDYWKRLRSPFVKERNVHYTGAESLLLREITRTSRSVNNSDELGREALRPRQLFCDLGDRRFGIQ 322 (392)
Q Consensus 243 t~~G~~I~~NF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (392)
+++|.+||+||++++-.+|.++.+...++|+-.. |+-|.++-- ..++.+..++
T Consensus 203 s~~g~~lfkNFl~lt~~~n~~c~~~~~k~~Ng~f--------------------s~nl~r~D~------~~~~~~i~~v- 255 (767)
T KOG1224|consen 203 STYGSQLFKNFLDLTVNYNSRCKSTSLKRRNGNF--------------------SANLQRPDA------FSAKTNIVDV- 255 (767)
T ss_pred hhhhHHHHHHHHHhhccCcccccchhhhhccCcc--------------------hhhhcCccc------cccccCCcch-
Confidence 9999999999999999999998888666666542 222222110 0011111122
Q ss_pred ccccccccccCCCceeeEEEEEEecccccccCChHHHHHHHhCCCCCCCeEEccCCCCCC--Ccccc
Q 046651 323 HSRRFEIQRSSIGVKCLKLTWRKFDHLASTVGGARNIFCELFGNNKAENTFWLDSSSTEK--VGFLH 387 (392)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~f~~lf~~~~~~~~fWLDss~~~~--~~~~~ 387 (392)
+.+..-..++...+.+++.|.+--+++.-+|.-+++|..+|+.+...++||++-++.++ |-|.|
T Consensus 256 -~~~~~sg~p~~~~k~~e~~w~~~l~la~c~~i~~~~f~~~f~~~~~n~g~wsi~~~~~~a~~rf~h 321 (767)
T KOG1224|consen 256 -FDMVDSGYPKPHTKLLELKWKKHLRLAHCVGIVRNIFMELFGKNRGNDGFWSITSSSDKARGRFSH 321 (767)
T ss_pred -HhhccCCCCCcceeEEEeccCCcchhhhhhhhhcccceeeeecccCCCceEEEEecCCCcceeEEE
Confidence 22233334455668899999999999988999999999999999888999999777654 33444
No 3
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.7e-59 Score=427.51 Aligned_cols=188 Identities=50% Similarity=0.811 Sum_probs=177.3
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC- 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~- 83 (392)
||+|||||||||||||+|+|++ +|.+++|++||+.+.+++.. ..+|.||||||||+|. |.|++.++|++.
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~-lg~~v~V~rnd~~~~~~~~~-----~~pd~iviSPGPG~P~---d~G~~~~~i~~~~ 72 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRE-LGAEVTVVRNDDISLELIEA-----LKPDAIVISPGPGTPK---DAGISLELIRRFA 72 (191)
T ss_pred ceEEEEECccchHHHHHHHHHH-cCCceEEEECCccCHHHHhh-----cCCCEEEEcCCCCChH---HcchHHHHHHHhc
Confidence 7899999999999999999998 78999999999777776655 6799999999999997 899999999984
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEE
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAW 163 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAw 163 (392)
+++||||||||||+|++++||+|.++++++||+.|.+.|+++.+|+++|+. |+|.||||++++++++|++++++||
T Consensus 73 ~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~i~h~g~~iF~glp~~----f~v~RYHSLvv~~~~lP~~l~vtA~ 148 (191)
T COG0512 73 GRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSIITHDGSGLFAGLPNP----FTVTRYHSLVVDPETLPEELEVTAE 148 (191)
T ss_pred CCCCEEEECccHHHHHHHhCCEEEecCCCcCCeeeeeecCCcccccCCCCC----CEEEeeEEEEecCCCCCCceEEEEE
Confidence 579999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred ecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCC
Q 046651 164 SNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243 (392)
Q Consensus 164 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat 243 (392)
+++. + +|||++|++.|+|||||||||+.|
T Consensus 149 ~~d~-------------~--------------------------------------~IMai~h~~~pi~gvQFHPESilT 177 (191)
T COG0512 149 SEDG-------------G--------------------------------------VIMAVRHKKLPIYGVQFHPESILT 177 (191)
T ss_pred eCCC-------------C--------------------------------------EEEEEeeCCCCEEEEecCCccccc
Confidence 9771 3 899999999999999999999999
Q ss_pred chhHHHHHHHHHH
Q 046651 244 CYGSKILRNFREI 256 (392)
Q Consensus 244 ~~G~~I~~NF~~l 256 (392)
++|.+|++||+++
T Consensus 178 ~~G~~il~Nfl~~ 190 (191)
T COG0512 178 EYGHRILENFLRL 190 (191)
T ss_pred cchHHHHHHHHhh
Confidence 9999999999976
No 4
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=6e-48 Score=355.17 Aligned_cols=185 Identities=45% Similarity=0.721 Sum_probs=167.3
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
|+|||||||||||||+++|++ .|.++.|+++|+.+++++.. ..+|+||||||||+|.+.. ...++++. ..
T Consensus 1 ~il~idn~Dsft~nl~~~l~~-~g~~v~v~~~~~~~~~~~~~-----~~~d~iils~GPg~p~~~~---~~~~~~~~~~~ 71 (187)
T PRK08007 1 MILLIDNYDSFTWNLYQYFCE-LGADVLVKRNDALTLADIDA-----LKPQKIVISPGPCTPDEAG---ISLDVIRHYAG 71 (187)
T ss_pred CEEEEECCCccHHHHHHHHHH-CCCcEEEEeCCCCCHHHHHh-----cCCCEEEEcCCCCChHHCC---ccHHHHHHhcC
Confidence 499999999999999999998 79999999999887888765 5799999999999997543 33444544 35
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.||..+.+.+.++.+|+++|.. +.|.+||++.|+..++|++++++|++
T Consensus 72 ~~PiLGIClG~Q~la~a~Gg~v~~~~~~~~g~~~~v~~~~~~l~~~~~~~----~~v~~~H~~~v~~~~lp~~~~v~a~~ 147 (187)
T PRK08007 72 RLPILGVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITHNGEGVFRGLANP----LTVTRYHSLVVEPDSLPACFEVTAWS 147 (187)
T ss_pred CCCEEEECHHHHHHHHHcCCEEEeCCCcccCCceEEEECCCCcccCCCCC----cEEEEcchhEEccCCCCCCeEEEEEe
Confidence 89999999999999999999999999999999999989888999999877 99999999999866699999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ + .+||++|.+.|+||||||||++.|.
T Consensus 148 ~~--------------~--------------------------------------~i~a~~~~~~~i~GvQfHPE~~~t~ 175 (187)
T PRK08007 148 ET--------------R--------------------------------------EIMGIRHRQWDLEGVQFHPESILSE 175 (187)
T ss_pred CC--------------C--------------------------------------cEEEEEeCCCCEEEEEeCCcccCCc
Confidence 87 7 8999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 046651 245 YGSKILRNFRE 255 (392)
Q Consensus 245 ~G~~I~~NF~~ 255 (392)
+|.+||+||++
T Consensus 176 ~G~~il~nFl~ 186 (187)
T PRK08007 176 QGHQLLANFLH 186 (187)
T ss_pred chHHHHHHHhh
Confidence 99999999985
No 5
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-47 Score=342.47 Aligned_cols=193 Identities=44% Similarity=0.721 Sum_probs=180.9
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
-+++||||||||||++|+|.--.|.++.|.|||+.|.+|+.. ..+++++||||||+|. |-|||++.+++ ..
T Consensus 20 piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~-----~NP~~LliSPGPG~P~---DsGIs~~~i~~f~~ 91 (223)
T KOG0026|consen 20 PIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKR-----KNPRGLLISPGPGTPQ---DSGISLQTVLELGP 91 (223)
T ss_pred CEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhh-----cCCCeEEecCCCCCCc---cccchHHHHHHhCC
Confidence 388999999999999999954489999999999999999987 7899999999999997 88999998888 57
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecC-CCceeceeEEEecC---CcccccCCCCCCcceEEEeeecceeecCCCC-CCcE
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAP-EPVHGRLSEIVHNG---DRLFHDIPSGQNSGFKVVRYHSLIIDADSLP-KELI 159 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~ap-ep~hG~~s~i~h~g---~~LF~~ips~~~s~f~VvryHSl~V~~~sLP-~~l~ 159 (392)
.||++|||+|.|.|..++||+|..++ +-+||..|.|.|++ +.+|+++|++ |.|.||||++++.+||| ++|.
T Consensus 92 ~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~~~~G~f~g~~q~----~~V~RYHSLa~~~sSlP~d~L~ 167 (223)
T KOG0026|consen 92 LVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNP----FIVGRYHSLVIEKDSFPSDELE 167 (223)
T ss_pred CCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCCccccccccCCCCC----eEEEeeeeeeeecccCCcccee
Confidence 99999999999999999999999999 88999999999988 8999999999 99999999999999999 8999
Q ss_pred EEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCE-EEEeccC
Q 046651 160 PIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPH-YGVQFHP 238 (392)
Q Consensus 160 ~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~-~GVQFHP 238 (392)
++|||++ + +|||.+|+++.| -||||||
T Consensus 168 VTawTEn--------------G--------------------------------------~iMgaRHkKY~~ieGVQfHP 195 (223)
T KOG0026|consen 168 VTAWTED--------------G--------------------------------------LVMAARHRKYKHIQGVQFHP 195 (223)
T ss_pred eeEeccC--------------c--------------------------------------EEEeeeccccccccceeecc
Confidence 9999999 7 999999999984 5999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhh
Q 046651 239 ESIATCYGSKILRNFREITEDYWK 262 (392)
Q Consensus 239 Esiat~~G~~I~~NF~~l~~~~~~ 262 (392)
||+.|++|+.+++||++++..-|.
T Consensus 196 ESIlteeGk~~irNflni~~~tWe 219 (223)
T KOG0026|consen 196 ESIITTEGKTIVRNFIKIVEKKWS 219 (223)
T ss_pred hhhhhhhhHHHHHHHHHhcccchh
Confidence 999999999999999999986664
No 6
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=100.00 E-value=3.6e-45 Score=339.34 Aligned_cols=188 Identities=44% Similarity=0.689 Sum_probs=167.7
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
|+|||||||||||||.+.|++ .|.++.|+++++.+++++.. ..||+||||||||+|..... ...+++. ..
T Consensus 1 ~il~idn~dsft~nl~~~l~~-~g~~v~v~~~~~~~~~~~~~-----~~~d~iIlsgGP~~p~~~~~---~~~~i~~~~~ 71 (195)
T PRK07649 1 MILMIDNYDSFTFNLVQFLGE-LGQELVVKRNDEVTISDIEN-----MKPDFLMISPGPCSPNEAGI---SMEVIRYFAG 71 (195)
T ss_pred CEEEEeCCCccHHHHHHHHHH-CCCcEEEEeCCCCCHHHHhh-----CCCCEEEECCCCCChHhCCC---chHHHHHhcC
Confidence 489999999999999999999 69999999999877777655 67999999999999975432 3333433 35
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.||....+.+++++||.++|.. |.+.+||++.|....+|++++++|++
T Consensus 72 ~~PvLGIClG~Qlla~~lGg~V~~~~~~~~G~~~~i~~~~~~lf~~~~~~----~~v~~~H~~~v~~~~lp~~~~~~a~s 147 (195)
T PRK07649 72 KIPIFGVCLGHQSIAQVFGGEVVRAERLMHGKTSLMHHDGKTIFSDIPNP----FTATRYHSLIVKKETLPDCLEVTSWT 147 (195)
T ss_pred CCCEEEEcHHHHHHHHHcCCEEeeCCCcccCCeEEEEECCChhhcCCCCC----CEEEEechheEecccCCCCeEEEEEc
Confidence 89999999999999999999999999999999888888888999999988 99999999999755699999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ + .+||++|.++|+||||||||++.|+
T Consensus 148 ~~--------------~--------------------------------------~v~a~~~~~~~i~gvQFHPE~~~t~ 175 (195)
T PRK07649 148 EE--------------G--------------------------------------EIMAIRHKTLPIEGVQFHPESIMTS 175 (195)
T ss_pred CC--------------C--------------------------------------cEEEEEECCCCEEEEEECCCCCCCc
Confidence 77 6 7999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH
Q 046651 245 YGSKILRNFREITE 258 (392)
Q Consensus 245 ~G~~I~~NF~~l~~ 258 (392)
+|.+||+||+++..
T Consensus 176 ~g~~il~nfl~~~~ 189 (195)
T PRK07649 176 HGKELLQNFIRKYS 189 (195)
T ss_pred cHHHHHHHHHHHhH
Confidence 99999999998764
No 7
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=9.9e-45 Score=333.65 Aligned_cols=189 Identities=47% Similarity=0.723 Sum_probs=164.5
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
|+|||||||||||||+++|++ .|.++.|+++++.+++++.. .++|+||||||||+|..... ...+++. ..
T Consensus 1 ~il~id~~dsf~~nl~~~l~~-~~~~~~v~~~~~~~~~~~~~-----~~~~~iilsgGP~~~~~~~~---~~~~i~~~~~ 71 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCE-LGTEVMVKRNDELQLTDIEQ-----LAPSHLVISPGPCTPNEAGI---SLAVIRHFAD 71 (191)
T ss_pred CEEEEECCCchHHHHHHHHHH-CCCcEEEEeCCCCCHHHHHh-----cCCCeEEEcCCCCChHhCCC---chHHHHHhcC
Confidence 389999999999999999998 79999999999877888765 57999999999999975432 3344443 35
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.++..||+...+.+..++||+++|.. ++|.+||++.|+...||++++++|++
T Consensus 72 ~~PiLGIC~G~Qlla~~~GG~v~~~~~~~~G~~~~~~~~~~~lf~~l~~~----~~v~~~Hs~~v~~~~lp~~~~vlA~s 147 (191)
T PRK06774 72 KLPILGVCLGHQALGQAFGARVVRARQVMHGKTSAICHSGQGVFRGLNQP----LTVTRYHSLVIAADSLPGCFELTAWS 147 (191)
T ss_pred CCCEEEECHHHHHHHHHhCCEEEeCCcceecceEEEEecCchhhcCCCCC----cEEEEeCcceeeccCCCCCeEEEEEe
Confidence 89999999999999999999999999889999888888888999999877 89999999999755599999999998
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
+.. + .-..+|+++|.+.|+||||||||+++|.
T Consensus 148 ~~d-------------~-----------------------------------~~~~i~~~~~~~~~i~GvQfHPE~~~~~ 179 (191)
T PRK06774 148 ERG-------------G-----------------------------------EMDEIMGIRHRTLPLEGVQFHPESILSE 179 (191)
T ss_pred CCC-------------C-----------------------------------CcceEEEEEeCCCCEEEEEECCCcCCCc
Confidence 751 1 0116899999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 046651 245 YGSKILRNFRE 255 (392)
Q Consensus 245 ~G~~I~~NF~~ 255 (392)
.|++||+||++
T Consensus 180 ~G~~i~~nf~~ 190 (191)
T PRK06774 180 QGHQLLDNFLK 190 (191)
T ss_pred cHHHHHHHHhh
Confidence 99999999975
No 8
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=100.00 E-value=9.4e-44 Score=385.31 Aligned_cols=203 Identities=33% Similarity=0.591 Sum_probs=170.1
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCC--CeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGV--PPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVL 80 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~--~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll 80 (392)
..||||||||||||||||+++|++++|. +++||++|...++.+.. + ..||+||||||||+|....+++++.+++
T Consensus 4 ~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~-l---~~~D~VVIspGPG~p~~~~~~~i~~~i~ 79 (742)
T TIGR01823 4 QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLEL-L---PLFDAIVVGPGPGNPNNAQDMGIISELW 79 (742)
T ss_pred CCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhh-h---cCCCEEEECCCCCCccchhhhHHHHHHH
Confidence 4689999999999999999999998775 45888998765443322 2 5799999999999999888899888877
Q ss_pred HHc--CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCc
Q 046651 81 LEC--WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKEL 158 (392)
Q Consensus 81 ~~~--~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l 158 (392)
... .++||||||+|||+|+.++||+|.+++.++||..+.|.+.+..||.+++. |+|++||++.++.. .|+.+
T Consensus 80 ~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~~~hG~~~~v~~~~~~lf~gl~~-----~~v~~~Hs~~v~~~-~~~~l 153 (742)
T TIGR01823 80 ELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKHGQVYEMHTNDAAIFCGLFS-----VKSTRYHSLYANPE-GIDTL 153 (742)
T ss_pred HhcccCCCcEEEEchhhHHHHhhcCCEEEECCCCCcCeEEEEEECCccccCCCCC-----CceeEEEEEEccCC-CCCcc
Confidence 542 37999999999999999999999999999999998899988999999974 78999999999765 45554
Q ss_pred EEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccC
Q 046651 159 IPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHP 238 (392)
Q Consensus 159 ~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHP 238 (392)
..++++.+.+ + .++||++|.++|+|||||||
T Consensus 154 ~~~~~a~~~~------------~-------------------------------------~~i~ai~h~~~pi~GVQFHP 184 (742)
T TIGR01823 154 LPLCLTEDEE------------G-------------------------------------IILMSAQTKKKPWFGVQYHP 184 (742)
T ss_pred eEEEEEEcCC------------C-------------------------------------CeEEEEEEcCCceEEEEeCc
Confidence 3343332210 1 18999999999999999999
Q ss_pred CCCCCchh-HHHHHHHHHHHHHhhhhc
Q 046651 239 ESIATCYG-SKILRNFREITEDYWKRL 264 (392)
Q Consensus 239 Esiat~~G-~~I~~NF~~l~~~~~~~~ 264 (392)
|+..+++| .+||+||++++..++++.
T Consensus 185 E~~~s~~g~~~Lf~nFl~~~~~~~~~~ 211 (742)
T TIGR01823 185 ESCCSELGSGKLVSNFLKLAFINNVKT 211 (742)
T ss_pred ccCCCCccHHHHHHHHHHHHHHhhhhc
Confidence 99999886 999999999999887653
No 9
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=100.00 E-value=4.4e-44 Score=329.60 Aligned_cols=186 Identities=44% Similarity=0.696 Sum_probs=164.9
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
|+||||||||||+|++++|++ .|.+++|++++..+++++.. ..+|+||||||||+|.... ...+++++ ..
T Consensus 1 ~il~id~~dsft~~~~~~l~~-~g~~v~v~~~~~~~~~~~~~-----~~~d~iilsgGpg~p~~~~---~~~~~i~~~~~ 71 (188)
T TIGR00566 1 MVLMIDNYDSFTYNLVQYFCE-LGAEVVVKRNDSLTLQEIEA-----LLPLLIVISPGPCTPNEAG---ISLEAIRHFAG 71 (188)
T ss_pred CEEEEECCcCHHHHHHHHHHH-cCCceEEEECCCCCHHHHHh-----cCCCEEEEcCCCCChhhcc---hhHHHHHHhcc
Confidence 399999999999999999999 69999999999877888765 4699999999999997532 23455554 35
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.||....|.++++.+|.+++.. |++.+||++.|++..+|++++++|++
T Consensus 72 ~~PvLGIC~G~Qll~~~~GG~v~~~~~~~~g~~~~v~~~~~~~~~~l~~~----~~v~~~H~~~v~~~~l~~~~~v~a~s 147 (188)
T TIGR00566 72 KLPILGVCLGHQAMGQAFGGDVVRANTVMHGKTSEIEHNGAGIFRGLFNP----LTATRYHSLVVEPETLPTCFPVTAWE 147 (188)
T ss_pred CCCEEEECHHHHHHHHHcCCEEeeCCCccccceEEEEECCCccccCCCCC----cEEEEcccceEecccCCCceEEEEEc
Confidence 89999999999999999999999999999999888989888999999876 99999999999766699999999998
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++. + .+||++|.++|+||||||||++.|+
T Consensus 148 ~~~-------------~--------------------------------------~v~a~~~~~~~i~gvQfHPE~~~t~ 176 (188)
T TIGR00566 148 EEN-------------I--------------------------------------EIMAIRHRDLPLEGVQFHPESILSE 176 (188)
T ss_pred CCC-------------C--------------------------------------EEEEEEeCCCCEEEEEeCCCccCCc
Confidence 751 2 7999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 046651 245 YGSKILRNFRE 255 (392)
Q Consensus 245 ~G~~I~~NF~~ 255 (392)
+|.+||+||++
T Consensus 177 ~G~~il~nfl~ 187 (188)
T TIGR00566 177 QGHQLLANFLH 187 (188)
T ss_pred ccHHHHHHHHh
Confidence 99999999974
No 10
>CHL00101 trpG anthranilate synthase component 2
Probab=100.00 E-value=5.1e-43 Score=322.81 Aligned_cols=187 Identities=45% Similarity=0.781 Sum_probs=165.3
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
|||||||||||||||.+.|++ .|++++++++++.+.+++.. ..+|+||||||||+|.+.. ....+++. ..
T Consensus 1 ~iliid~~dsft~~l~~~l~~-~g~~~~v~~~~~~~~~~~~~-----~~~dgiiisgGpg~~~~~~---~~~~i~~~~~~ 71 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGE-LNSDVLVCRNDEIDLSKIKN-----LNIRHIIISPGPGHPRDSG---ISLDVISSYAP 71 (190)
T ss_pred CEEEEECCCchHHHHHHHHHh-cCCCEEEEECCCCCHHHHhh-----CCCCEEEECCCCCChHHCc---chHHHHHHhcC
Confidence 499999999999999999998 79999999998766777654 5699999999999997532 23344433 35
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.||....+.++.+++|.++|.. |.+.+||++.|+..+||++++++|++
T Consensus 72 ~~PiLGIClG~Qlla~~~Gg~V~~~~~~~~g~~~~~~~~~~~l~~~~~~~----~~v~~~H~~~v~~~~lp~~~~vla~s 147 (190)
T CHL00101 72 YIPILGVCLGHQSIGYLFGGKIIKAPKPMHGKTSKIYHNHDDLFQGLPNP----FTATRYHSLIIDPLNLPSPLEITAWT 147 (190)
T ss_pred CCcEEEEchhHHHHHHHhCCEEEECCCcccCceeeEeeCCcHhhccCCCc----eEEEcchhheeecccCCCceEEEEEc
Confidence 89999999999999999999999999999999888888888899999987 99999999999865699999999998
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCC-EEEEeccCCCCCC
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRP-HYGVQFHPESIAT 243 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P-~~GVQFHPEsiat 243 (392)
++ + .+||++|.++| +||||||||+..|
T Consensus 148 ~~--------------~--------------------------------------~v~a~~~~~~~~i~gvQfHPE~~~~ 175 (190)
T CHL00101 148 ED--------------G--------------------------------------LIMACRHKKYKMLRGIQFHPESLLT 175 (190)
T ss_pred CC--------------C--------------------------------------cEEEEEeCCCCCEEEEEeCCccCCC
Confidence 87 6 89999999999 9999999999889
Q ss_pred chhHHHHHHHHHHH
Q 046651 244 CYGSKILRNFREIT 257 (392)
Q Consensus 244 ~~G~~I~~NF~~l~ 257 (392)
++|.+||+||+++.
T Consensus 176 ~~g~~l~~nf~~~~ 189 (190)
T CHL00101 176 THGQQILRNFLSLS 189 (190)
T ss_pred hhHHHHHHHHHhhh
Confidence 99999999999864
No 11
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=7.7e-43 Score=322.10 Aligned_cols=191 Identities=42% Similarity=0.660 Sum_probs=163.1
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
||||||||||||||+++.|.+ .|.++.++++++.+.+++.. .++|+||+||||++|...... .++++. ..
T Consensus 1 ~il~id~~dsft~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~-----~~~~~iilsgGp~~~~~~~~~---~~~i~~~~~ 71 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCE-LGAQVKVVRNDEIDIDGIEA-----LNPTHLVISPGPCTPNEAGIS---LQAIEHFAG 71 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHH-CCCcEEEEECCCCCHHHHhh-----CCCCEEEEeCCCCChHHCcch---HHHHHHhcC
Confidence 499999999999999999988 79999999998765665533 568999999999999854332 334433 35
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.||....+.++++++|.++|.. ++|.+||++.|+..+||++++++||+
T Consensus 72 ~~PiLGIClG~Qlia~a~Gg~v~~~~~~~~G~~~~~~~~~~~l~~~~~~~----~~v~~~H~~~v~~~~lp~~~~v~a~s 147 (193)
T PRK08857 72 KLPILGVCLGHQAIAQVFGGQVVRARQVMHGKTSPIRHTGRSVFKGLNNP----LTVTRYHSLVVKNDTLPECFELTAWT 147 (193)
T ss_pred CCCEEEEcHHHHHHHHHhCCEEEeCCCceeCceEEEEECCCcccccCCCc----cEEEEccEEEEEcCCCCCCeEEEEEe
Confidence 99999999999999999999999999999999777888888999999887 99999999999866699999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
+..+ + ....+||++|.++|+||||||||+..|+
T Consensus 148 ~~~~------------~-----------------------------------~~~~i~~~~~~~~pi~gvQfHPE~~~t~ 180 (193)
T PRK08857 148 ELED------------G-----------------------------------SMDEIMGFQHKTLPIEAVQFHPESIKTE 180 (193)
T ss_pred cCcC------------C-----------------------------------CcceEEEEEeCCCCEEEEeeCCCcCCCc
Confidence 7310 1 0127999999999999999999999999
Q ss_pred hhHHHHHHHHHH
Q 046651 245 YGSKILRNFREI 256 (392)
Q Consensus 245 ~G~~I~~NF~~l 256 (392)
+|++||+||++-
T Consensus 181 ~g~~i~~nFl~~ 192 (193)
T PRK08857 181 QGHQLLANFLAR 192 (193)
T ss_pred chHHHHHHHHhh
Confidence 999999999863
No 12
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=100.00 E-value=1.8e-42 Score=318.59 Aligned_cols=186 Identities=34% Similarity=0.597 Sum_probs=162.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
.||+||||||||||+||.++|.+ .|.++.++++++.+.+++ ..+|+|||+||||+|.. .....++|++
T Consensus 1 ~~~iliid~~dsf~~~i~~~l~~-~g~~~~v~~~~~~~~~~l-------~~~d~iIi~gGp~~~~~---~~~~~~~i~~~ 69 (190)
T PRK06895 1 ATKLLIINNHDSFTFNLVDLIRK-LGVPMQVVNVEDLDLDEV-------ENFSHILISPGPDVPRA---YPQLFAMLERY 69 (190)
T ss_pred CcEEEEEeCCCchHHHHHHHHHH-cCCcEEEEECCccChhHh-------ccCCEEEECCCCCChHH---hhHHHHHHHHh
Confidence 48999999999999999999998 699999999876545554 45999999999998743 3334556654
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEe-cCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVH-NGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h-~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
..++||||||+|||+|+.++||+|.+.+...||....+.. ++++||+++|.. +.|.+||++.++.+++|+.+..+
T Consensus 70 ~~~~PiLGIClG~Qlla~~~Gg~V~~~~~~~~g~~~~v~~~~~~~l~~~~~~~----~~v~~~Hs~~v~~~~lp~~l~~~ 145 (190)
T PRK06895 70 HQHKSILGVCLGHQTLCEFFGGELYNLNNVRHGQQRPLKVRSNSPLFDGLPEE----FNIGLYHSWAVSEENFPTPLEIT 145 (190)
T ss_pred cCCCCEEEEcHHHHHHHHHhCCeEeecCCCccCceEEEEECCCChhhhcCCCc----eEEEcchhheecccccCCCeEEE
Confidence 3589999999999999999999999988888998777654 568899999988 99999999999866699999999
Q ss_pred EEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCC
Q 046651 162 AWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241 (392)
Q Consensus 162 Awt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsi 241 (392)
|++++ + .+|+++|.++|+||+|||||+.
T Consensus 146 a~~~~--------------~--------------------------------------~i~a~~~~~~pi~GvQFHPE~~ 173 (190)
T PRK06895 146 AVCDE--------------N--------------------------------------VVMAMQHKTLPIYGVQFHPESY 173 (190)
T ss_pred EECCC--------------C--------------------------------------cEEEEEECCCCEEEEEeCCCcC
Confidence 98766 5 8999999999999999999999
Q ss_pred CCchhHHHHHHHHHH
Q 046651 242 ATCYGSKILRNFREI 256 (392)
Q Consensus 242 at~~G~~I~~NF~~l 256 (392)
+|++|.+|++||+++
T Consensus 174 ~~~~g~~il~nf~~~ 188 (190)
T PRK06895 174 ISEFGEQILRNWLAI 188 (190)
T ss_pred CCcchHHHHHHHHhh
Confidence 999999999999875
No 13
>PLN02335 anthranilate synthase
Probab=100.00 E-value=5e-42 Score=324.26 Aligned_cols=191 Identities=41% Similarity=0.688 Sum_probs=166.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC- 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~- 83 (392)
.|||||||||||||||.++|++ .|+++.|+++|..+.+++.. ..+|+||||||||+|.+. +...+++++.
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~-~g~~~~v~~~~~~~~~~~~~-----~~~d~iVisgGPg~p~d~---~~~~~~~~~~~ 89 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGE-LGCHFEVYRNDELTVEELKR-----KNPRGVLISPGPGTPQDS---GISLQTVLELG 89 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHH-CCCcEEEEECCCCCHHHHHh-----cCCCEEEEcCCCCChhhc---cchHHHHHHhC
Confidence 6899999999999999999999 79999999998766777654 569999999999999743 3345555553
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCC-CceeceeEEEecC---CcccccCCCCCCcceEEEeeecceeecCCCCCC-c
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPE-PVHGRLSEIVHNG---DRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKE-L 158 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~ape-p~hG~~s~i~h~g---~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~-l 158 (392)
.++||||||||||+|+.++||+|.+.+. ..||....+.+.. ++||.++|.. |.+++||++.|+++++|++ +
T Consensus 90 ~~~PiLGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~~~~~Lf~~l~~~----~~v~~~H~~~v~~~~lp~~~~ 165 (222)
T PLN02335 90 PLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNP----FTAGRYHSLVIEKDTFPSDEL 165 (222)
T ss_pred CCCCEEEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCCCCChhhhCCCCC----CEEEechhheEecccCCCCce
Confidence 4799999999999999999999999875 4788888877643 4899999987 9999999999987779987 9
Q ss_pred EEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCC-EEEEecc
Q 046651 159 IPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRP-HYGVQFH 237 (392)
Q Consensus 159 ~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P-~~GVQFH 237 (392)
+++||+++ + .+|+++|++.| +||||||
T Consensus 166 ~v~a~~~~--------------~--------------------------------------~v~ai~~~~~~~i~GvQfH 193 (222)
T PLN02335 166 EVTAWTED--------------G--------------------------------------LIMAARHRKYKHIQGVQFH 193 (222)
T ss_pred EEEEEcCC--------------C--------------------------------------CEEEEEecCCCCEEEEEeC
Confidence 99999977 6 89999999888 8999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHh
Q 046651 238 PESIATCYGSKILRNFREITEDY 260 (392)
Q Consensus 238 PEsiat~~G~~I~~NF~~l~~~~ 260 (392)
||++.+++|..||+||++++.++
T Consensus 194 PE~~~~~~g~~i~~nF~~~~~~~ 216 (222)
T PLN02335 194 PESIITTEGKTIVRNFIKIIEKK 216 (222)
T ss_pred CCCCCChhHHHHHHHHHHHHHhh
Confidence 99999999999999999988754
No 14
>PRK05670 anthranilate synthase component II; Provisional
Probab=100.00 E-value=7.9e-42 Score=313.89 Aligned_cols=187 Identities=51% Similarity=0.828 Sum_probs=164.2
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
||||||||||||+|+.+.|.+ .|.++++++++....+++.. ..+|+||||||||+|... +...+++++ ..
T Consensus 1 ~iliid~~d~f~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~-----~~~dglIlsgGpg~~~d~---~~~~~~l~~~~~ 71 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGE-LGAEVVVYRNDEITLEEIEA-----LNPDAIVLSPGPGTPAEA---GISLELIREFAG 71 (189)
T ss_pred CEEEEECCCchHHHHHHHHHH-CCCcEEEEECCCCCHHHHHh-----CCCCEEEEcCCCCChHHc---chHHHHHHHhcC
Confidence 499999999999999999998 79999999998765666544 459999999999999643 234455554 34
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.||....+.+.++++|+++|.. +.+.++|++.|...+||++++++|++
T Consensus 72 ~~PvLGIClG~Qlla~alGg~v~~~~~~~~g~~~~v~~~~~~l~~~~~~~----~~v~~~H~~~v~~~~lp~~~~~la~s 147 (189)
T PRK05670 72 KVPILGVCLGHQAIGEAFGGKVVRAKEIMHGKTSPIEHDGSGIFAGLPNP----FTVTRYHSLVVDRESLPDCLEVTAWT 147 (189)
T ss_pred CCCEEEECHHHHHHHHHhCCEEEecCCcccCceeEEEeCCCchhccCCCC----cEEEcchhheeccccCCCceEEEEEe
Confidence 79999999999999999999999999889998888877888999999887 89999999999755599999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ + .+||+++.++|+||+|||||+..++
T Consensus 148 ~~--------------~--------------------------------------~i~a~~~~~~~~~gvQfHPE~~~~~ 175 (189)
T PRK05670 148 DD--------------G--------------------------------------EIMGVRHKELPIYGVQFHPESILTE 175 (189)
T ss_pred CC--------------C--------------------------------------cEEEEEECCCCEEEEeeCCCcCCCc
Confidence 76 6 8999999999999999999998899
Q ss_pred hhHHHHHHHHHHH
Q 046651 245 YGSKILRNFREIT 257 (392)
Q Consensus 245 ~G~~I~~NF~~l~ 257 (392)
.|.+||+||++++
T Consensus 176 ~g~~i~~~F~~~~ 188 (189)
T PRK05670 176 HGHKLLENFLELA 188 (189)
T ss_pred chHHHHHHHHHhh
Confidence 9999999999975
No 15
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=6.7e-42 Score=359.09 Aligned_cols=187 Identities=34% Similarity=0.551 Sum_probs=164.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCC---HHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWT---WRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL 81 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~---~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~ 81 (392)
||||||||||||||||+++|++ +|.+++|++++.+. .+++.. .++|+||||||||+|.+. ++...+++
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~-~g~~v~V~~~~~~~~~~~~~l~~-----~~~~~IIlSpGPg~p~d~---~~~~~i~~ 72 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRS-NGHNVVIYRNHIPAQTLIERLAT-----MSNPVLMLSPGPGVPSEA---GCMPELLT 72 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHH-CCCCEEEEECCCCCccCHHHHHh-----cCcCEEEEcCCCCChhhC---CCCHHHHH
Confidence 6999999999999999999988 79999999998653 344433 458899999999999743 33445554
Q ss_pred H-cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEE
Q 046651 82 E-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIP 160 (392)
Q Consensus 82 ~-~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~ 160 (392)
+ ..++||||||+|||+|+.++||+|.+.+++.||+...+.|+++.+|.++|.. |+|++||++.|.. +|+++++
T Consensus 73 ~~~~~iPILGIClG~QlLa~a~GG~V~~~~~~~~G~~~~i~~~~~~lf~~~~~~----~~v~~~Hs~~v~~--lP~~l~v 146 (531)
T PRK09522 73 RLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGLTNP----LPVARYHSLVGSN--IPAGLTI 146 (531)
T ss_pred HHhcCCCEEEEcHHHHHHHHhcCCEEEeCCceeeeeEEEEeecCCccccCCCCC----cEEEEehheeccc--CCCCcEE
Confidence 3 3589999999999999999999999999999999999999999999999987 9999999999976 9999999
Q ss_pred EEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 161 IAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 161 iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
+|++ + + .+||++|.++|+||||||||+
T Consensus 147 lA~s-d--------------~--------------------------------------~v~ai~~~~~~i~GVQFHPEs 173 (531)
T PRK09522 147 NAHF-N--------------G--------------------------------------MVMAVRHDADRVCGFQFHPES 173 (531)
T ss_pred EEec-C--------------C--------------------------------------CEEEEEECCCCEEEEEecCcc
Confidence 9985 4 4 799999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHH
Q 046651 241 IATCYGSKILRNFREITED 259 (392)
Q Consensus 241 iat~~G~~I~~NF~~l~~~ 259 (392)
+.|++|.+||+||++++..
T Consensus 174 ~~T~~G~~il~NFl~~~~~ 192 (531)
T PRK09522 174 ILTTQGARLLEQTLAWAQQ 192 (531)
T ss_pred ccCcchHHHHHHHHHHHhh
Confidence 9999999999999999853
No 16
>PRK05637 anthranilate synthase component II; Provisional
Probab=100.00 E-value=7.4e-41 Score=313.65 Aligned_cols=191 Identities=30% Similarity=0.472 Sum_probs=158.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
.|||||||||||||||+++|++ .|+.++|++++. +++++.. ..+|+||||||||+|.+. +...++++. .
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~-~g~~~~v~~~~~-~~~~l~~-----~~~~~iIlsgGPg~~~d~---~~~~~li~~~~ 71 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAV-AGYKCTVFRNTV-PVEEILA-----ANPDLICLSPGPGHPRDA---GNMMALIDRTL 71 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHH-CCCcEEEEeCCC-CHHHHHh-----cCCCEEEEeCCCCCHHHh---hHHHHHHHHHh
Confidence 4799999999999999999998 799999999986 4777754 579999999999999643 334455644 3
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEec----CCcccccCCCCC--------CcceEEEeeecceeec
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN----GDRLFHDIPSGQ--------NSGFKVVRYHSLIIDA 151 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~----g~~LF~~ips~~--------~s~f~VvryHSl~V~~ 151 (392)
.++||||||+|||+|+.++||+|.+.. +.+|....+..+ .+++|.++|... ...++|.+||++.|..
T Consensus 72 ~~~PiLGIClG~Qlla~alGG~V~~~~-~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~ 150 (208)
T PRK05637 72 GQIPLLGICLGFQALLEHHGGKVEPCG-PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVV 150 (208)
T ss_pred CCCCEEEEcHHHHHHHHHcCCeeccCC-cccceEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhhc
Confidence 479999999999999999999999875 688887766544 457999987310 0128899999999987
Q ss_pred CCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCE
Q 046651 152 DSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPH 231 (392)
Q Consensus 152 ~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~ 231 (392)
+|++++++||+++.. + .++|++++.++++
T Consensus 151 --lp~~~~vlA~s~~~~------------~-------------------------------------~v~~a~~~~~~~~ 179 (208)
T PRK05637 151 --APDGMESLGTCSSEI------------G-------------------------------------PVIMAAETTDGKA 179 (208)
T ss_pred --CCCCeEEEEEecCCC------------C-------------------------------------CEEEEEEECCCCE
Confidence 999999999986510 1 1789999999999
Q ss_pred EEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 232 YGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 232 ~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
||||||||++.|++|.+||+||++-.
T Consensus 180 ~GvQfHPE~~~T~~G~~il~nfl~~~ 205 (208)
T PRK05637 180 IGLQFHPESVLSPTGPIILSRCVEQL 205 (208)
T ss_pred EEEEeCCccCcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999643
No 17
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=7.1e-39 Score=301.12 Aligned_cols=191 Identities=41% Similarity=0.708 Sum_probs=167.0
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC- 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~- 83 (392)
||+|+|||+|+|++|+.+.|.+ .|+.+++++++.+..++...++ ..||+|||||||++|... ....++++++
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~---~~~dgliisGGp~~~~~~---~~~~~~i~~~~ 73 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQ-LGVEAEVWRNDDPRLADEAAVA---AQFDGVLLSPGPGTPERA---GASIDMVRACA 73 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHH-cCCcEEEEECCCcCHHHHHHhh---cCCCEEEECCCCCChhhc---chHHHHHHHHH
Confidence 8999999999999999999988 7999999999875334443323 579999999999988643 3344555552
Q ss_pred -CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEE
Q 046651 84 -WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162 (392)
Q Consensus 84 -~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iA 162 (392)
.++||||||+|||+|+.++||+|.+.+.+.+|....+.+....+|.+++.. |++.++|++.|.+.+||+++.++|
T Consensus 74 ~~~~PiLGIC~G~Qlla~a~GG~v~~~~~~~~g~~~~v~~~~~~~~~~~~~~----~~v~~~H~~~v~~~~lp~~~~vla 149 (214)
T PRK07765 74 AAGTPLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVHHTGVGVLAGLPDP----FTATRYHSLTILPETLPAELEVTA 149 (214)
T ss_pred hCCCCEEEEccCHHHHHHHhCCEEeeCCCCccCceeEEEECCCccccCCCCc----cEEEecchheEecccCCCceEEEE
Confidence 489999999999999999999999999999999888888888899999887 999999999998666999999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
++++ + .+||+++.++++||||||||++.
T Consensus 150 ~s~~--------------~--------------------------------------~vqa~~~~~~~i~gvQfHPE~~~ 177 (214)
T PRK07765 150 RTDS--------------G--------------------------------------VIMAVRHRELPIHGVQFHPESVL 177 (214)
T ss_pred EcCC--------------C--------------------------------------cEEEEEeCCCCEEEEeeCCCccc
Confidence 9987 6 89999999999999999999988
Q ss_pred CchhHHHHHHHHHHHH
Q 046651 243 TCYGSKILRNFREITE 258 (392)
Q Consensus 243 t~~G~~I~~NF~~l~~ 258 (392)
|..|.+|++||.++|.
T Consensus 178 t~~g~~~l~~f~~~~~ 193 (214)
T PRK07765 178 TEGGHRMLANWLTVCG 193 (214)
T ss_pred CcchHHHHHHHHHHhc
Confidence 9999999999999874
No 18
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.3e-38 Score=331.80 Aligned_cols=189 Identities=49% Similarity=0.763 Sum_probs=165.9
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCC-eEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVP-PVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~-pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
|||||||||||||||.+.|++ .|.+ +.++++++.+++++.. ..+|+||||||||+|.+.. ...++++. .
T Consensus 1 ~il~idn~dsft~nl~~~l~~-~g~~~v~~~~~~~~~~~~~~~-----~~~d~vIlsgGP~~p~~~~---~~~~li~~~~ 71 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGE-LGPEEIEVVRNDEITIEEIEA-----LNPSHIVISPGPGRPEEAG---ISVEVIRHFS 71 (534)
T ss_pred CEEEEECchhHHHHHHHHHHH-cCCCeEEEECCCCCCHHHHHh-----cCCCEEEECCCCCChhhCC---ccHHHHHHhh
Confidence 599999999999999999999 5775 7777777767888755 5699999999999997532 23344443 3
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEE
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAW 163 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAw 163 (392)
.++||||||+|||+|+.++||+|.+.+.+.||....+.++++.+|.++|.. ++|.+||++.|+..+||++++++|+
T Consensus 72 ~~~PvLGIClG~QlLa~a~Gg~V~~~~~~~~G~~~~v~~~~~~lf~~~~~~----~~v~~~Hs~~v~~~~lp~~~~vlA~ 147 (534)
T PRK14607 72 GKVPILGVCLGHQAIGYAFGGKIVHAKRILHGKTSPIDHNGKGLFRGIPNP----TVATRYHSLVVEEASLPECLEVTAK 147 (534)
T ss_pred cCCCEEEEcHHHHHHHHHcCCeEecCCccccCCceeEEECCCcchhcCCCC----cEEeeccchheecccCCCCeEEEEE
Confidence 489999999999999999999999999999999988888889999999987 8999999999986669999999999
Q ss_pred ecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCC
Q 046651 164 SNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243 (392)
Q Consensus 164 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat 243 (392)
+++ + .+||++|.++|+||||||||+..|
T Consensus 148 s~d--------------~--------------------------------------~i~a~~~~~~pi~GvQFHPE~~~t 175 (534)
T PRK14607 148 SDD--------------G--------------------------------------EIMGIRHKEHPIFGVQFHPESILT 175 (534)
T ss_pred cCC--------------C--------------------------------------CEEEEEECCCCEEEEEeCCCCCCC
Confidence 987 6 899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHH
Q 046651 244 CYGSKILRNFREITED 259 (392)
Q Consensus 244 ~~G~~I~~NF~~l~~~ 259 (392)
++|++||+||++++.+
T Consensus 176 ~~g~~i~~nFl~~~~~ 191 (534)
T PRK14607 176 EEGKRILKNFLNYQRE 191 (534)
T ss_pred hhHHHHHHHHHHHhhc
Confidence 9999999999998753
No 19
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=100.00 E-value=5.9e-37 Score=279.70 Aligned_cols=182 Identities=52% Similarity=0.777 Sum_probs=155.4
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCC
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWDV 86 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~i 86 (392)
|||||+||+|++++.+.|++ .|+++.++++++.. +++.. + ..+|+|||+||||++.........++.+ ..++
T Consensus 1 il~~~~~~~~~~~~~~~l~~-~G~~~~~~~~~~~~-~~~~~-~---~~~dgvil~gG~~~~~~~~~~~~i~~~~--~~~~ 72 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRE-LGAEVVVVRNDEIT-LEELE-L---LNPDAIVISPGPGHPEDAGISLEIIRAL--AGKV 72 (184)
T ss_pred CEEEeCCCccHHHHHHHHHH-cCCceEEEeCCCCC-HHHHh-h---cCCCEEEECCCCCCcccchhHHHHHHHH--hcCC
Confidence 68999999999999999998 79999999998762 32211 1 5799999999999987643222233333 2489
Q ss_pred CEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCC--cEEEEEe
Q 046651 87 PILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKE--LIPIAWS 164 (392)
Q Consensus 87 PILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~--l~~iAwt 164 (392)
||||||+|||+|+.++||+|.+.+.+.+|....+...++++|+++|.. +.+..+|++.|+. +|.+ ++++|.+
T Consensus 73 PvlGIC~G~Qlla~~~Gg~v~~~~~~~~g~~~~v~~~~~~~~~~~~~~----~~~~~~H~~~v~~--~~~~~~~~~la~~ 146 (184)
T cd01743 73 PILGVCLGHQAIAEAFGGKVVRAPEPMHGKTSEIHHDGSGLFKGLPQP----FTVGRYHSLVVDP--DPLPDLLEVTAST 146 (184)
T ss_pred CEEEECHhHHHHHHHhCCEEEeCCCCCcCceeEEEECCCccccCCCCC----cEEEeCcEEEEec--CCCCceEEEEEeC
Confidence 999999999999999999999999988998778877888999999887 8999999999987 6665 8999998
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ + .+||+++.++|+||+|||||+..++
T Consensus 147 ~~--------------~--------------------------------------~v~a~~~~~~~i~gvQfHPE~~~~~ 174 (184)
T cd01743 147 ED--------------G--------------------------------------VIMALRHRDLPIYGVQFHPESILTE 174 (184)
T ss_pred CC--------------C--------------------------------------eEEEEEeCCCCEEEEeeCCCcCCCc
Confidence 77 6 8999999999999999999999999
Q ss_pred hhHHHHHHHH
Q 046651 245 YGSKILRNFR 254 (392)
Q Consensus 245 ~G~~I~~NF~ 254 (392)
+|.+||+||+
T Consensus 175 ~g~~l~~~f~ 184 (184)
T cd01743 175 YGLRLLENFL 184 (184)
T ss_pred chHHHHHhhC
Confidence 9999999994
No 20
>PRK00758 GMP synthase subunit A; Validated
Probab=100.00 E-value=1.4e-36 Score=277.43 Aligned_cols=183 Identities=32% Similarity=0.526 Sum_probs=156.5
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCc-CEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAF-DNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~f-DgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
||+|||++++|++++.++|++ .|.++.+++++.. .+++. ++ |+|||+||| ++. +.....+++++.
T Consensus 1 ~i~iid~~~~~~~~i~~~l~~-~g~~~~~~~~~~~-~~~l~-------~~~dgivi~Gg~-~~~---~~~~~~~~l~~~- 66 (184)
T PRK00758 1 KIVVVDNGGQYNHLIHRTLRY-LGVDAKIIPNTTP-VEEIK-------AFEDGLILSGGP-DIE---RAGNCPEYLKEL- 66 (184)
T ss_pred CEEEEECCCchHHHHHHHHHH-cCCcEEEEECCCC-HHHHh-------hcCCEEEECCCC-Chh---hccccHHHHHhC-
Confidence 499999999999999999998 6999999998764 56653 36 999999998 222 223344566554
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.+|.........+.+|.++|.. +.+.++|++.|.. ||++++++|++
T Consensus 67 ~~PilGIC~G~Q~L~~a~Gg~v~~~~~~~~g~~~i~~~~~~~l~~~~~~~----~~~~~~H~~~v~~--l~~~~~~la~~ 140 (184)
T PRK00758 67 DVPILGICLGHQLIAKAFGGEVGRGEYGEYALVEVEILDEDDILKGLPPE----IRVWASHADEVKE--LPDGFEILARS 140 (184)
T ss_pred CCCEEEEeHHHHHHHHhcCcEEecCCCceeeeEEEEEcCCChhhhCCCCC----cEEEeehhhhhhh--CCCCCEEEEEC
Confidence 89999999999999999999999999889998655445567899999887 9999999999976 99999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ + .++|+++.++|+||||||||+..++
T Consensus 141 ~~--------------~--------------------------------------~v~a~~~~~~~~~g~QfHPE~~~~~ 168 (184)
T PRK00758 141 DI--------------C--------------------------------------EVEAMKHKEKPIYGVQFHPEVAHTE 168 (184)
T ss_pred CC--------------C--------------------------------------CEEEEEECCCCEEEEEcCCccCCCc
Confidence 87 6 8999999999999999999998889
Q ss_pred hhHHHHHHHHHHHHHh
Q 046651 245 YGSKILRNFREITEDY 260 (392)
Q Consensus 245 ~G~~I~~NF~~l~~~~ 260 (392)
+|++||+||++++.+|
T Consensus 169 ~g~~l~~~f~~~~~~~ 184 (184)
T PRK00758 169 YGEEIFKNFLEICGKY 184 (184)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999999987654
No 21
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=4.4e-36 Score=272.07 Aligned_cols=181 Identities=28% Similarity=0.394 Sum_probs=154.5
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCC
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWDV 86 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~i 86 (392)
|+|||++++|++++.++|.+ .|.++++++++.. .++.. + ..+|+|||+|||++++......+. +.+.+. ++
T Consensus 1 i~~iD~g~~~~~~~~~~l~~-~G~~~~~~~~~~~-~~~~~--~---~~~dgvIl~Gg~~~~~~~~~~~~~-~~~~~~-~~ 71 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRE-LGVYSEILPNTTP-LEEIK--L---KNPKGIILSGGPSSVYEEDAPRVD-PEIFEL-GV 71 (181)
T ss_pred CEEEECCCchHHHHHHHHHh-cCceEEEecCCCC-hhhhc--c---cCCCEEEECCCcccccccccchhh-HHHHhc-CC
Confidence 58999999999999999999 6999999998874 33222 1 679999999999988754323333 333333 99
Q ss_pred CEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEecC
Q 046651 87 PILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNS 166 (392)
Q Consensus 87 PILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt~~ 166 (392)
|+||||+|||+|+.++||+|.+.+.+.+|........+++||.++|.. +++..+|++.|.. +|++++++|++++
T Consensus 72 PilGIC~G~Qll~~~~gg~v~~~~~~~~G~~~v~~~~~~~l~~~~~~~----~~~~~~H~~~v~~--l~~~~~~la~~~~ 145 (181)
T cd01742 72 PVLGICYGMQLIAKALGGKVERGDKREYGKAEIEIDDSSPLFEGLPDE----QTVWMSHGDEVVK--LPEGFKVIASSDN 145 (181)
T ss_pred CEEEEcHHHHHHHHhcCCeEEeCCCCcceEEEEEecCCChhhcCCCCc----eEEEcchhhhhhh--cCCCcEEEEeCCC
Confidence 999999999999999999999999999998766455678899999987 9999999999977 9999999999887
Q ss_pred CCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCchh
Q 046651 167 ADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246 (392)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~~G 246 (392)
+ .++|+++.+.++||+|||||+..+++|
T Consensus 146 --------------~--------------------------------------~i~a~~~~~~~~~g~QfHPE~~~~~~g 173 (181)
T cd01742 146 --------------C--------------------------------------PVAAIANEEKKIYGVQFHPEVTHTEKG 173 (181)
T ss_pred --------------C--------------------------------------CEEEEEeCCCcEEEEEcCCccccCcCh
Confidence 6 899999998899999999999988899
Q ss_pred HHHHHHHH
Q 046651 247 SKILRNFR 254 (392)
Q Consensus 247 ~~I~~NF~ 254 (392)
++||+||+
T Consensus 174 ~~ll~~f~ 181 (181)
T cd01742 174 KEILKNFL 181 (181)
T ss_pred HHHHHhhC
Confidence 99999994
No 22
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=100.00 E-value=2.7e-35 Score=269.84 Aligned_cols=182 Identities=29% Similarity=0.433 Sum_probs=156.4
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCC
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWDV 86 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~i 86 (392)
|+|||++++|+++|.+.|++ .|+++++++++.. .+++.. -++|+|||+|||+++++.....+...++ + .++
T Consensus 1 i~iiD~g~~~~~~l~~~l~~-~g~~~~~~~~~~~-~~~~~~-----~~~~glii~Gg~~~~~~~~~~~~i~~~~-~-~~~ 71 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRE-LGVYSELVPNTTP-LEEIRE-----KNPKGIILSGGPSSVYAENAPRADEKIF-E-LGV 71 (188)
T ss_pred CEEEECCchHHHHHHHHHHH-cCCEEEEEeCCCC-HHHHhh-----cCCCEEEECCCCCCcCcCCchHHHHHHH-h-CCC
Confidence 58999999999999999998 6999999998874 566644 2367999999999988754444443333 2 489
Q ss_pred CEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEecC
Q 046651 87 PILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNS 166 (392)
Q Consensus 87 PILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt~~ 166 (392)
||||||+|||+|+.++||+|.+.+.+.+|+........++||.++|.. +++..+|++.+.. ||++++++|++++
T Consensus 72 PilGIC~G~Qll~~~lgg~v~~~~~~~~g~~~v~~~~~~~l~~~~~~~----~~~~~~H~~~v~~--l~~~~~vla~~~~ 145 (188)
T TIGR00888 72 PVLGICYGMQLMAKQLGGEVGRAEKREYGKAELEILDEDDLFRGLPDE----STVWMSHGDKVKE--LPEGFKVLATSDN 145 (188)
T ss_pred CEEEECHHHHHHHHhcCceEecCCCccceeEEEEEecCCHhhcCCCCC----cEEEeEccceeec--CCCCCEEEEECCC
Confidence 999999999999999999999999999998765445567899999876 9999999999976 9999999999877
Q ss_pred CCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCchh
Q 046651 167 ADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246 (392)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~~G 246 (392)
+ .++|+++.+.|+||+|||||+..+.+|
T Consensus 146 --------------~--------------------------------------~v~a~~~~~~~~~g~QfHPE~~~~~~g 173 (188)
T TIGR00888 146 --------------C--------------------------------------PVAAMAHEEKPIYGVQFHPEVTHTEYG 173 (188)
T ss_pred --------------C--------------------------------------CeEEEEECCCCEEEEeeCCccCCChhh
Confidence 5 899999998899999999999888899
Q ss_pred HHHHHHHHH
Q 046651 247 SKILRNFRE 255 (392)
Q Consensus 247 ~~I~~NF~~ 255 (392)
++||+||++
T Consensus 174 ~~i~~~f~~ 182 (188)
T TIGR00888 174 NELLENFVY 182 (188)
T ss_pred HHHHHHHHH
Confidence 999999987
No 23
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=100.00 E-value=1.4e-35 Score=270.56 Aligned_cols=185 Identities=38% Similarity=0.617 Sum_probs=158.5
Q ss_pred EEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc--CC
Q 046651 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC--WD 85 (392)
Q Consensus 8 LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~--~~ 85 (392)
||||+||||+++|.+.+.+ .|.++++++++.. .++....+ ..||+|||||||++++. +.....+++++ .+
T Consensus 1 lviD~~~~~~~~l~~~l~~-~~~~~~v~~~~~~-~~~~~~~~---~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~ 72 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRE-LGIDVEVVRVDSD-FEEPLEDL---DDYDGIIISGGPGSPYD---IEGLIELIREARERK 72 (192)
T ss_dssp EEEESSHTTHHHHHHHHHH-TTEEEEEEETTGG-HHHHHHHT---TTSSEEEEECESSSTTS---HHHHHHHHHHHHHTT
T ss_pred CEEeCCHHHHHHHHHHHHH-CCCeEEEEECCCc-hhhhhhhh---cCCCEEEECCcCCcccc---ccccccccccccccc
Confidence 7999999999999999999 6999999998873 44432112 78999999999999986 55555555552 49
Q ss_pred CCEEEEcHHHHHHHHHhCCeeeecC-CCceeceeEEEecCC-cccccCCCCCCcceEEEeeecceeec-CCCCCCcEEEE
Q 046651 86 VPILGVCLGHQALGFVHGADIVHAP-EPVHGRLSEIVHNGD-RLFHDIPSGQNSGFKVVRYHSLIIDA-DSLPKELIPIA 162 (392)
Q Consensus 86 iPILGVCLGhQ~La~a~Gg~V~~ap-ep~hG~~s~i~h~g~-~LF~~ips~~~s~f~VvryHSl~V~~-~sLP~~l~~iA 162 (392)
+||||||+|||+|+.++|++|.+.+ .+.+|....+..++. ++|.++|.. |.+.++|++.|.+ +.+|++++++|
T Consensus 73 ~PilGIC~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~H~~~v~~~~~~p~~~~~la 148 (192)
T PF00117_consen 73 IPILGICLGHQILAHALGGKVVPSPEKPHHGGNIPISETPEDPLFYGLPES----FKAYQYHSDAVNPDDLLPEGFEVLA 148 (192)
T ss_dssp SEEEEETHHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEEEHGGGTTSTSE----EEEEEEECEEEEEGHHHHTTEEEEE
T ss_pred eEEEEEeehhhhhHHhcCCcccccccccccccccccccccccccccccccc----cccccccceeeeccccccccccccc
Confidence 9999999999999999999999988 788998888777554 999999987 9999999999986 23789999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
++++. + .++++.+.+.|+||+|||||+..
T Consensus 149 ~s~~~-------------~--------------------------------------~~~~~~~~~~~i~g~QfHPE~~~ 177 (192)
T PF00117_consen 149 SSSDG-------------C--------------------------------------PIQAIRHKDNPIYGVQFHPEFSS 177 (192)
T ss_dssp EETTT-------------T--------------------------------------EEEEEEECTTSEEEESSBTTSTT
T ss_pred ccccc-------------c--------------------------------------ccccccccccEEEEEecCCcCCC
Confidence 99761 3 69999999999999999999999
Q ss_pred CchhHHHHHHHHH
Q 046651 243 TCYGSKILRNFRE 255 (392)
Q Consensus 243 t~~G~~I~~NF~~ 255 (392)
+..|..|++||+-
T Consensus 178 ~~~~~~~l~nf~~ 190 (192)
T PF00117_consen 178 SPGGPQLLKNFFL 190 (192)
T ss_dssp STTHHHHHHHHHH
T ss_pred CCCcchhhhheeE
Confidence 9999999999973
No 24
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=100.00 E-value=6.5e-35 Score=314.90 Aligned_cols=191 Identities=37% Similarity=0.524 Sum_probs=161.1
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+||||||++|+|+++|.++|.+ .|+++.+++++.. +++. +...+|+||||||||+|.+.....++.+++
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~-~G~~v~vv~~~~~--~~~~----~~~~~DgLILsgGPGsp~d~~~~~~I~~~~-- 585 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQ-TGASVTTLRHSHA--EAAF----DERRPDLVVLSPGPGRPADFDVAGTIDAAL-- 585 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHH-CCCeEEEEECCCC--hhhh----hhcCCCEEEEcCCCCCchhcccHHHHHHHH--
Confidence 458999999999999999999998 7999999988753 2322 125699999999999997543333333333
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEe-cCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVH-NGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h-~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
..++||||||+|||+|+.++||+|.+.+.|+||+.+.|.. ..++||.++|.. |.|.+|||+.++..+||++++++
T Consensus 586 ~~~iPvLGICLG~QlLa~a~GG~V~~~~~p~~G~~~~V~~~~~~~Lf~~lp~~----~~v~~~HS~~~~~~~LP~~~~vl 661 (717)
T TIGR01815 586 ARGLPVFGVCLGLQGMVEAFGGALDVLPEPVHGKASRIRVLGPDALFAGLPER----LTVGRYHSLFARRDRLPAELTVT 661 (717)
T ss_pred HCCCCEEEECHHHHHHhhhhCCEEEECCCCeeCcceEEEECCCChhhhcCCCC----CEEEEECCCCcccccCCCCeEEE
Confidence 2499999999999999999999999999999998776654 456899999988 99999999988766699999999
Q ss_pred EEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCC
Q 046651 162 AWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241 (392)
Q Consensus 162 Awt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsi 241 (392)
|++++ + .+|||+|.+.|+||||||||++
T Consensus 662 A~s~d--------------~--------------------------------------~v~Ai~~~~~~i~GVQFHPEsi 689 (717)
T TIGR01815 662 AESAD--------------G--------------------------------------LIMAIEHRRLPLAAVQFHPESI 689 (717)
T ss_pred EEeCC--------------C--------------------------------------cEEEEEECCCCEEEEEeCCeeC
Confidence 99977 6 8999999999999999999998
Q ss_pred CCc---hhHHHHHHHHHHHH
Q 046651 242 ATC---YGSKILRNFREITE 258 (392)
Q Consensus 242 at~---~G~~I~~NF~~l~~ 258 (392)
.|. .|.+||+||+..+.
T Consensus 690 ~T~sg~~G~~ilkNfl~~~~ 709 (717)
T TIGR01815 690 MTLDGGAGLAMIGNVVDRLA 709 (717)
T ss_pred CccCchhHHHHHHHHHHHHh
Confidence 775 48999999997764
No 25
>PLN02347 GMP synthetase
Probab=100.00 E-value=2.8e-34 Score=301.71 Aligned_cols=191 Identities=25% Similarity=0.329 Sum_probs=162.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
-+|+|||++++||++|.+.|++ .|+.+++++++. +.+++.. ..+|+|||||||++++......+...+++.
T Consensus 11 ~~IlIID~G~~~t~~I~r~lre-lgv~~~v~p~~~-~~~~i~~-----~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~ 83 (536)
T PLN02347 11 DVVLILDYGSQYTHLITRRVRE-LGVYSLLLSGTA-SLDRIAS-----LNPRVVILSGGPHSVHVEGAPTVPEGFFDYCR 83 (536)
T ss_pred CEEEEEECCCcHHHHHHHHHHH-CCCeEEEEECCC-CHHHHhc-----CCCCEEEECCCCCcccccCCchhhHHHHHHHH
Confidence 4799999999999999999999 699999999985 4788754 469999999999999764332233333332
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iA 162 (392)
..++||||||+|||+|+.++||+|.+.+.+.+|+.....+.+++||+++|+.. .+.|+++|++.|.. ||+++.++|
T Consensus 84 ~~~iPILGIClG~QlLa~alGG~V~~~~~~e~G~~~v~i~~~~~Lf~~l~~~~--~~~v~~~Hsd~V~~--lP~g~~vlA 159 (536)
T PLN02347 84 ERGVPVLGICYGMQLIVQKLGGEVKPGEKQEYGRMEIRVVCGSQLFGDLPSGE--TQTVWMSHGDEAVK--LPEGFEVVA 159 (536)
T ss_pred hcCCcEEEECHHHHHHHHHcCCEEEecCCcccceEEEEEcCCChhhhcCCCCc--eEEEEEEEEEEeee--CCCCCEEEE
Confidence 23899999999999999999999999988899998755567889999998751 26899999999977 999999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
++++ + .+||++|.++|+||||||||+..
T Consensus 160 ~s~~--------------~--------------------------------------~iaai~~~~~~i~GvQFHPE~~~ 187 (536)
T PLN02347 160 KSVQ--------------G--------------------------------------AVVAIENRERRIYGLQYHPEVTH 187 (536)
T ss_pred EeCC--------------C--------------------------------------cEEEEEECCCCEEEEEccCCCCc
Confidence 9988 6 78999999999999999999999
Q ss_pred CchhHHHHHHHH-HHHH
Q 046651 243 TCYGSKILRNFR-EITE 258 (392)
Q Consensus 243 t~~G~~I~~NF~-~l~~ 258 (392)
|++|.+||+||+ ++|.
T Consensus 188 t~~G~~iL~NFl~~ic~ 204 (536)
T PLN02347 188 SPKGMETLRHFLFDVCG 204 (536)
T ss_pred cchHHHHHHHHHHHHhC
Confidence 999999999997 6663
No 26
>PRK13566 anthranilate synthase; Provisional
Probab=100.00 E-value=1.9e-34 Score=311.57 Aligned_cols=189 Identities=37% Similarity=0.551 Sum_probs=162.6
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..||||||||+|+|+++|.++|+. .|+++++++++.. .+.+.. .++|+||||||||+|.... +.++++.
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~-~G~~v~vv~~~~~-~~~~~~-----~~~DgVVLsgGpgsp~d~~----~~~lI~~ 593 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQ-TGAEVTTVRYGFA-EEMLDR-----VNPDLVVLSPGPGRPSDFD----CKATIDA 593 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHH-CCCEEEEEECCCC-hhHhhh-----cCCCEEEECCCCCChhhCC----cHHHHHH
Confidence 458999999999999999999998 6999999999874 333322 5799999999999986432 2344443
Q ss_pred --cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEec-CCcccccCCCCCCcceEEEeeecceeecCCCCCCcE
Q 046651 83 --CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN-GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELI 159 (392)
Q Consensus 83 --~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~-g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~ 159 (392)
..++||||||+|||+|+.++||+|.+.+.+.||....|... .+.||+++|.. |.+.+||++.++...||++++
T Consensus 594 a~~~~iPILGIClG~QlLa~alGG~V~~~~~~~~G~~~~V~v~~~~~Lf~~lp~~----~~v~~~Hs~~v~~~~Lp~~~~ 669 (720)
T PRK13566 594 ALARNLPIFGVCLGLQAIVEAFGGELGQLAYPMHGKPSRIRVRGPGRLFSGLPEE----FTVGRYHSLFADPETLPDELL 669 (720)
T ss_pred HHHCCCcEEEEehhHHHHHHHcCCEEEECCCCccCCceEEEECCCCchhhcCCCC----CEEEEecceeEeeccCCCceE
Confidence 24899999999999999999999999999999988777654 45899999987 999999999988767999999
Q ss_pred EEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCC
Q 046651 160 PIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPE 239 (392)
Q Consensus 160 ~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPE 239 (392)
++|++++ + .||||+|.+.|+||||||||
T Consensus 670 vlA~s~d--------------g--------------------------------------~V~ai~~~~~pi~GVQFHPE 697 (720)
T PRK13566 670 VTAETED--------------G--------------------------------------VIMAIEHKTLPVAAVQFHPE 697 (720)
T ss_pred EEEEeCC--------------C--------------------------------------cEEEEEECCCCEEEEeccCe
Confidence 9999987 6 89999999999999999999
Q ss_pred CCCC---chhHHHHHHHHHHHH
Q 046651 240 SIAT---CYGSKILRNFREITE 258 (392)
Q Consensus 240 siat---~~G~~I~~NF~~l~~ 258 (392)
++.| ..|.+||+||++++.
T Consensus 698 ~i~t~~~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 698 SIMTLGGDVGLRIIENVVRLLA 719 (720)
T ss_pred eCCcCCchhHHHHHHHHHHHhh
Confidence 9987 569999999998763
No 27
>PRK00074 guaA GMP synthase; Reviewed
Probab=100.00 E-value=9.7e-32 Score=281.56 Aligned_cols=186 Identities=30% Similarity=0.387 Sum_probs=160.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
.+|+|||++++||..|.+.|++ .|+.+++++++.. .+++.. ..+|+|||||||.+++......+... +.+.
T Consensus 4 ~~i~vlD~Gsq~~~li~r~lre-lg~~~~v~p~~~~-~~~l~~-----~~~dgIIlsGGp~sv~~~~~p~~~~~-i~~~- 74 (511)
T PRK00074 4 DKILILDFGSQYTQLIARRVRE-LGVYSEIVPYDIS-AEEIRA-----FNPKGIILSGGPASVYEEGAPRADPE-IFEL- 74 (511)
T ss_pred CEEEEEECCCCcHHHHHHHHHH-CCCeEEEEECCCC-HHHHhc-----cCCCEEEECCCCcccccCCCccccHH-HHhC-
Confidence 4799999999999999999999 7999999988764 677654 35799999999998876433333233 3333
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+++|+......++++||.+++.. +.|+.+|++.|.. +|++++++|.+
T Consensus 75 ~~PvLGIC~G~QlLa~~lGG~V~~~~~~e~G~~~i~i~~~~~Lf~~l~~~----~~v~~~H~d~V~~--lp~g~~vlA~s 148 (511)
T PRK00074 75 GVPVLGICYGMQLMAHQLGGKVERAGKREYGRAELEVDNDSPLFKGLPEE----QDVWMSHGDKVTE--LPEGFKVIAST 148 (511)
T ss_pred CCCEEEECHHHHHHHHHhCCeEEecCCcccceEEEEEcCCChhhhcCCCc----eEEEEECCeEEEe--cCCCcEEEEEe
Confidence 89999999999999999999999998889997765445677899999887 8999999999987 99999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ + .++|+++.+.++||+|||||+..|+
T Consensus 149 ~~--------------~--------------------------------------~v~ai~~~~~~i~GvQFHPE~~~t~ 176 (511)
T PRK00074 149 EN--------------C--------------------------------------PIAAIANEERKFYGVQFHPEVTHTP 176 (511)
T ss_pred CC--------------C--------------------------------------CEEEEEeCCCCEEEEeCCCCcCCch
Confidence 87 6 8999999999999999999999999
Q ss_pred hhHHHHHHHH-HHH
Q 046651 245 YGSKILRNFR-EIT 257 (392)
Q Consensus 245 ~G~~I~~NF~-~l~ 257 (392)
.|.+||+||+ ++|
T Consensus 177 ~G~~il~nFl~~i~ 190 (511)
T PRK00074 177 QGKKLLENFVFDIC 190 (511)
T ss_pred hHHHHHHHHHHHhc
Confidence 9999999999 676
No 28
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=1.1e-31 Score=270.09 Aligned_cols=179 Identities=27% Similarity=0.408 Sum_probs=148.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
..||++||+ +.++|+++.|.+ .|..+++++++. +.+++.. ..+|+||||||||+|... ....+++++.
T Consensus 177 ~~~I~viD~--G~k~nivr~L~~-~G~~v~vvp~~~-~~~~i~~-----~~~DGIvLSgGPgdp~~~---~~~~~~i~~~ 244 (360)
T PRK12564 177 KYKVVAIDF--GVKRNILRELAE-RGCRVTVVPATT-TAEEILA-----LNPDGVFLSNGPGDPAAL---DYAIEMIREL 244 (360)
T ss_pred CCEEEEEeC--CcHHHHHHHHHH-CCCEEEEEeCCC-CHHHHHh-----cCCCEEEEeCCCCChHHH---HHHHHHHHHH
Confidence 479999998 478999999998 799999999986 4677654 469999999999998643 3334444441
Q ss_pred --CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 84 --WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 84 --~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
.++||||||+|||+|+.++||++.+++.+.||....+.... .++ .+.+.+||++.|++++||++++++
T Consensus 245 ~~~~~PilGIClG~QlLa~a~Gg~v~kl~~gh~G~~~pv~~~~--------~~~--~~its~~H~~~V~~~~lp~~l~v~ 314 (360)
T PRK12564 245 LEKKIPIFGICLGHQLLALALGAKTYKMKFGHRGANHPVKDLE--------TGK--VEITSQNHGFAVDEDSLPANLEVT 314 (360)
T ss_pred HHcCCeEEEECHHHHHHHHHhCCcEeccCCCccCCceeeEECC--------CCc--EEEEecCcccEEcccccCCceEEE
Confidence 38999999999999999999999999988999877765432 111 155678999999877799999999
Q ss_pred EEec-CCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 162 AWSN-SADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 162 Awt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
|++. + + .+|||+|.++|+||||||||+
T Consensus 315 a~~~~D--------------g--------------------------------------~iegi~~~~~pi~gVQfHPE~ 342 (360)
T PRK12564 315 HVNLND--------------G--------------------------------------TVEGLRHKDLPAFSVQYHPEA 342 (360)
T ss_pred EEeCCC--------------C--------------------------------------cEEEEEECCCCEEEEEeCCcC
Confidence 9984 4 5 899999999999999999999
Q ss_pred CCCch-hHHHHHHHHHH
Q 046651 241 IATCY-GSKILRNFREI 256 (392)
Q Consensus 241 iat~~-G~~I~~NF~~l 256 (392)
..++. ++.||++|+++
T Consensus 343 ~~gp~d~~~lF~~F~~~ 359 (360)
T PRK12564 343 SPGPHDSAYLFDEFVEL 359 (360)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 88765 88999999986
No 29
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=100.00 E-value=1.2e-31 Score=244.45 Aligned_cols=174 Identities=28% Similarity=0.382 Sum_probs=139.4
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--cC
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE--CW 84 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~ 84 (392)
++|||++.. ||++++|.. .|..+++++++.. .+++.. ..+|+|||+|||++|... ....+++++ ..
T Consensus 1 i~i~d~g~~--~~~~~~l~~-~G~~~~~~~~~~~-~~~~~~-----~~~dgiil~GG~~~~~~~---~~~~~~~~~~~~~ 68 (178)
T cd01744 1 VVVIDFGVK--HNILRELLK-RGCEVTVVPYNTD-AEEILK-----LDPDGIFLSNGPGDPALL---DEAIKTVRKLLGK 68 (178)
T ss_pred CEEEecCcH--HHHHHHHHH-CCCeEEEEECCCC-HHHHhh-----cCCCEEEECCCCCChhHh---HHHHHHHHHHHhC
Confidence 589999766 588999988 7999999999864 555433 579999999999988642 334444544 23
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|...+.+.+|....+.... .++ .+.+.+||++.|+.+++|++++++|++
T Consensus 69 ~~PvlGIC~G~Q~l~~~~Gg~v~~~~~~~~g~~~~v~~~~--------~~~--~~~v~~~H~~~v~~~~lp~~~~v~a~s 138 (178)
T cd01744 69 KIPIFGICLGHQLLALALGAKTYKMKFGHRGSNHPVKDLI--------TGR--VYITSQNHGYAVDPDSLPGGLEVTHVN 138 (178)
T ss_pred CCCEEEECHHHHHHHHHcCCceecCCCCCCCCceeeEEcC--------CCC--cEEEEcCceEEEcccccCCceEEEEEE
Confidence 7999999999999999999999998877788766554432 111 167789999999876699999999998
Q ss_pred c-CCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCC
Q 046651 165 N-SADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243 (392)
Q Consensus 165 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat 243 (392)
. + + .+||++|.++|+||||||||+..+
T Consensus 139 ~~~--------------~--------------------------------------~i~a~~~~~~~i~GvQfHPE~~~~ 166 (178)
T cd01744 139 LND--------------G--------------------------------------TVEGIRHKDLPVFSVQFHPEASPG 166 (178)
T ss_pred CCC--------------C--------------------------------------cEEEEEECCCCeEEEeeCCCCCCC
Confidence 4 4 5 899999999999999999999876
Q ss_pred c-hhHHHHHHHH
Q 046651 244 C-YGSKILRNFR 254 (392)
Q Consensus 244 ~-~G~~I~~NF~ 254 (392)
+ ..+.||++|+
T Consensus 167 ~~~~~~lf~~f~ 178 (178)
T cd01744 167 PHDTEYLFDEFL 178 (178)
T ss_pred CCCchHhHhhhC
Confidence 4 4678999984
No 30
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.98 E-value=3.3e-31 Score=268.14 Aligned_cols=182 Identities=26% Similarity=0.451 Sum_probs=145.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc-hhHHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED-IGICLRVLLE 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d-~gi~~~ll~~ 82 (392)
.+||+|||| +++|||.+.|.+ .|++++|++++.. .+++.. .++|+||||||||+|....+ +..+.+++ +
T Consensus 192 ~~~I~viD~--g~k~ni~~~L~~-~G~~v~vvp~~~~-~~~i~~-----~~~dgIilSgGPg~p~~~~~~i~~i~~~~-~ 261 (382)
T CHL00197 192 QLKIIVIDF--GVKYNILRRLKS-FGCSITVVPATSP-YQDILS-----YQPDGILLSNGPGDPSAIHYGIKTVKKLL-K 261 (382)
T ss_pred CCEEEEEEC--CcHHHHHHHHHH-CCCeEEEEcCCCC-HHHHhc-----cCCCEEEEcCCCCChhHHHHHHHHHHHHH-h
Confidence 489999999 899999999998 6999999999864 677654 57999999999999965333 22333333 2
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEE-eeecceeecCCCCC-CcEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVV-RYHSLIIDADSLPK-ELIP 160 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~Vv-ryHSl~V~~~sLP~-~l~~ 160 (392)
.++||||||||||+|+.++||++.+++.+.+|....+ .++.. +.+. +||++.++.+++++ .+.+
T Consensus 262 -~~~PilGIClGhQlLa~a~Gg~v~k~~~Gh~g~n~pv---------~~~~~----v~itsq~H~~~v~~~sv~~~~~~v 327 (382)
T CHL00197 262 -YNIPIFGICMGHQILSLALEAKTFKLKFGHRGLNHPS---------GLNQQ----VEITSQNHGFAVNLESLAKNKFYI 327 (382)
T ss_pred -CCCCEEEEcHHHHHHHHHhCCEEeccCCCCCCCCEec---------CCCCc----eEEeecchheEeeccccCCCCcEE
Confidence 3899999999999999999999999886665543222 23333 5565 89999999888886 6888
Q ss_pred EEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 161 IAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 161 iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
++++.+. + .+|||+|+++|+||||||||+
T Consensus 328 t~~~~nD-------------g--------------------------------------tvegi~h~~~pi~gVQFHPE~ 356 (382)
T CHL00197 328 THFNLND-------------G--------------------------------------TVAGISHSPKPYFSVQYHPEA 356 (382)
T ss_pred EEEECCC-------------C--------------------------------------CEEEEEECCCCcEEEeeCCCC
Confidence 8886320 4 789999999999999999999
Q ss_pred CCCchh-HHHHHHHHHHHHHh
Q 046651 241 IATCYG-SKILRNFREITEDY 260 (392)
Q Consensus 241 iat~~G-~~I~~NF~~l~~~~ 260 (392)
..++++ ..||++|+++++..
T Consensus 357 ~~gp~d~~~lf~~Fv~~~~~~ 377 (382)
T CHL00197 357 SPGPHDADYLFEYFIEIIKHS 377 (382)
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 888775 57999999998753
No 31
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.97 E-value=4e-31 Score=265.87 Aligned_cols=180 Identities=27% Similarity=0.398 Sum_probs=146.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
.||++||+ +.++||++.|.+ .|+.++|++++. +.+++.. ..+|+||||||||+|... ....+++++ .
T Consensus 174 ~~i~viD~--G~k~ni~~~L~~-~G~~v~vvp~~~-~~~~i~~-----~~pDGIiLSgGPgdp~~~---~~~i~~i~~~~ 241 (358)
T TIGR01368 174 KRVVVIDF--GVKQNILRRLVK-RGCEVTVVPYDT-DAEEIKK-----YNPDGIFLSNGPGDPAAV---EPAIETIRKLL 241 (358)
T ss_pred cEEEEEeC--CcHHHHHHHHHH-CCCEEEEEcCCC-CHHHHHh-----hCCCEEEECCCCCCHHHH---HHHHHHHHHHH
Confidence 68999998 788999999998 799999999986 4777755 347999999999998642 223333433 1
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCC-CCcEEEE
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLP-KELIPIA 162 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP-~~l~~iA 162 (392)
.++||||||+|||+|+.++||++.+++.+.||....+.... .++ .+.+.++|++.|++++|| ++++++|
T Consensus 242 ~~~PILGIClG~QlLa~a~Gg~v~kl~~gh~G~nhpV~~~~--------~~~--v~itsqnH~~aV~~~~l~~~~l~vta 311 (358)
T TIGR01368 242 EKIPIFGICLGHQLLALAFGAKTYKMKFGHRGGNHPVKDLI--------TGR--VEITSQNHGYAVDPDSLPAGDLEVTH 311 (358)
T ss_pred cCCCEEEECHHHHHHHHHhCCceeccCcCcCCCceeeEECC--------CCc--EEEeecCCCcEEcccccCCCceEEEE
Confidence 38999999999999999999999999988999877665422 221 144568999999987788 6899999
Q ss_pred Eec-CCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCC
Q 046651 163 WSN-SADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241 (392)
Q Consensus 163 wt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsi 241 (392)
++. + + .||||+|+++|+||||||||+.
T Consensus 312 ~~~nD--------------g--------------------------------------~Vegi~h~~~pi~gVQfHPE~~ 339 (358)
T TIGR01368 312 VNLND--------------G--------------------------------------TVEGIRHKDLPVFSVQYHPEAS 339 (358)
T ss_pred EECCC--------------C--------------------------------------cEEEEEECCCCEEEEEECCCCC
Confidence 984 4 5 8999999999999999999998
Q ss_pred CCch-hHHHHHHHHHHHH
Q 046651 242 ATCY-GSKILRNFREITE 258 (392)
Q Consensus 242 at~~-G~~I~~NF~~l~~ 258 (392)
.++. .+.||++|++++.
T Consensus 340 ~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 340 PGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred CCCCChHHHHHHHHHHhh
Confidence 8775 5789999998874
No 32
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.97 E-value=7.5e-31 Score=263.53 Aligned_cols=182 Identities=29% Similarity=0.406 Sum_probs=147.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
..+|++||+ ++++||++.|.+ .|..+++++++.. .+++.. ..+|+||||||||+|.... ...+++++
T Consensus 167 ~~~V~viD~--G~k~ni~~~L~~-~G~~v~vvp~~~~-~~~i~~-----~~~DGIiLsgGPgdp~~~~---~~~~~i~~~ 234 (354)
T PRK12838 167 GKHVALIDF--GYKKSILRSLSK-RGCKVTVLPYDTS-LEEIKN-----LNPDGIVLSNGPGDPKELQ---PYLPEIKKL 234 (354)
T ss_pred CCEEEEECC--CHHHHHHHHHHH-CCCeEEEEECCCC-HHHHhh-----cCCCEEEEcCCCCChHHhH---HHHHHHHHH
Confidence 368999999 699999999998 7999999999864 667654 4699999999999986432 22334444
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCC-CcEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPK-ELIPI 161 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~-~l~~i 161 (392)
...+||||||+|||+|+.++||++.+++.+.||....|...... + .+.+.+||++.|+.++++. .++++
T Consensus 235 ~~~~PvlGIClG~QlLa~a~Gg~v~kl~~gh~G~~hpV~~~~~~--------~--~~~ts~~H~~aV~~~sl~~~~l~v~ 304 (354)
T PRK12838 235 ISSYPILGICLGHQLIALALGADTEKLPFGHRGANHPVIDLTTG--------R--VWMTSQNHGYVVDEDSLDGTPLSVR 304 (354)
T ss_pred hcCCCEEEECHHHHHHHHHhCCEEecCCCCccCCceEEEECCCC--------e--EEEeccchheEecccccCCCCcEEE
Confidence 22499999999999999999999999998999988877653221 1 1456689999998877875 48888
Q ss_pred EEec-CCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 162 AWSN-SADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 162 Awt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
+++. + + .+|||+|+++|+||||||||+
T Consensus 305 a~~~~D--------------g--------------------------------------~Veai~~~~~pi~gVQfHPE~ 332 (354)
T PRK12838 305 FFNVND--------------G--------------------------------------SIEGLRHKKKPVLSVQFHPEA 332 (354)
T ss_pred EEECCC--------------C--------------------------------------eEEEEEECCCCEEEEEeCCCC
Confidence 8863 3 4 899999999999999999999
Q ss_pred CCCch-hHHHHHHHHHHHHH
Q 046651 241 IATCY-GSKILRNFREITED 259 (392)
Q Consensus 241 iat~~-G~~I~~NF~~l~~~ 259 (392)
..++. +++||++|++++.+
T Consensus 333 ~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 333 HPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred CCCCccHHHHHHHHHHHHHh
Confidence 88764 88999999998863
No 33
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=1.1e-30 Score=242.15 Aligned_cols=175 Identities=29% Similarity=0.451 Sum_probs=136.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc----hhHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED----IGICLRVL 80 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d----~gi~~~ll 80 (392)
|||+|||++++|.+++.+.|++ .|+++++++++ +++ .++|+||| ||||++....+ .+ ..+.+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~-~g~~~~~v~~~----~~~-------~~~d~iIl-PG~G~~~~~~~~l~~~~-l~~~i 66 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIER-LGYEPVVSRDP----DVI-------LAADKLFL-PGVGTAQAAMDQLRERE-LIDLI 66 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHH-CCCeEEEECCH----HHh-------CCCCEEEE-CCCCchHHHHHHHHHcC-hHHHH
Confidence 8999999999999999999998 69999999754 344 45899999 99999865322 12 23444
Q ss_pred HHcCCCCEEEEcHHHHHHHHHh---C---------Ceeeec-----CCCceeceeEEEecCCcccccCCCCCCcceEEEe
Q 046651 81 LECWDVPILGVCLGHQALGFVH---G---------ADIVHA-----PEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVR 143 (392)
Q Consensus 81 ~~~~~iPILGVCLGhQ~La~a~---G---------g~V~~a-----pep~hG~~s~i~h~g~~LF~~ips~~~s~f~Vvr 143 (392)
.+. ++||||||+|||+|+.+. | ++|.+. +.|+.|+......++++||+++|+. +.+++
T Consensus 67 ~~~-~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~~~~~l~~~l~~~----~~v~~ 141 (196)
T PRK13170 67 KAC-TQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQAGHPLFQGIEDG----SYFYF 141 (196)
T ss_pred HHc-CCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeCCCChhhhCCCcC----CEEEE
Confidence 455 899999999999999997 2 456653 4467888654444678899999988 99999
Q ss_pred eecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEE
Q 046651 144 YHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMG 223 (392)
Q Consensus 144 yHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmg 223 (392)
||++. +|++...+|.++. + ..+.
T Consensus 142 ~Hs~~-----lp~~~~~la~s~~--------------~--------------------------------------~~~~ 164 (196)
T PRK13170 142 VHSYA-----MPVNEYTIAQCNY--------------G--------------------------------------EPFS 164 (196)
T ss_pred ECeee-----cCCCCcEEEEecC--------------C--------------------------------------CeEE
Confidence 99985 4556678888776 4 3444
Q ss_pred EEecCCCEEEEeccCCCCCCchhHHHHHHHHHH
Q 046651 224 IMHSTRPHYGVQFHPESIATCYGSKILRNFREI 256 (392)
Q Consensus 224 i~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l 256 (392)
..+.+.++||+|||||+. +++|.+||+||+++
T Consensus 165 ~~~~~~~i~G~QFHPE~~-~~~G~~~l~nfl~~ 196 (196)
T PRK13170 165 AAIQKDNFFGVQFHPERS-GAAGAQLLKNFLEM 196 (196)
T ss_pred EEEEcCCEEEEECCCCCc-ccccHHHHHHHhhC
Confidence 445678899999999995 68999999999863
No 34
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.97 E-value=1.2e-29 Score=258.39 Aligned_cols=168 Identities=23% Similarity=0.328 Sum_probs=138.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
.||++||. ..++||.+.|.+ .|+.++|++++.. .+++.. ..+|+||||||||+|... ....+.+++ .
T Consensus 241 ~~IvviD~--G~K~nIlr~L~~-~G~~v~VvP~~~~-~~ei~~-----~~pDGIiLSnGPGDP~~~---~~~ie~ik~l~ 308 (415)
T PLN02771 241 YHVIAYDF--GIKHNILRRLAS-YGCKITVVPSTWP-ASEALK-----MKPDGVLFSNGPGDPSAV---PYAVETVKELL 308 (415)
T ss_pred CEEEEECC--ChHHHHHHHHHH-cCCeEEEECCCCC-HHHHhh-----cCCCEEEEcCCCCChhHh---hHHHHHHHHHH
Confidence 68999998 559999999998 7999999999874 677765 579999999999999642 333344443 2
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEE
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAW 163 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAw 163 (392)
.++||||||||||+|+.++||+|.+++.+.||....|.+.. .++. ..+.+||++.|++.+||++++++++
T Consensus 309 ~~iPIlGICLGhQlLa~AlGGkv~K~~~Gh~G~n~pV~~~~--------~~~v--~itsqnHg~aVd~~sLp~~~~vt~~ 378 (415)
T PLN02771 309 GKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNR--------TGRV--EISAQNHNYAVDPASLPEGVEVTHV 378 (415)
T ss_pred hCCCEEEEcHHHHHHHHhcCCeEEECCCCcccceEEEEECC--------CCCE--EEEecCHHHhhccccCCCceEEEEE
Confidence 48999999999999999999999999999999988776532 2210 3456999999988889999999999
Q ss_pred e-cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 164 S-NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 164 t-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
+ +| + .+|||+|.+.|+||||||||+..
T Consensus 379 nlnD--------------g--------------------------------------tvegi~~~~~pi~gVQFHPEa~p 406 (415)
T PLN02771 379 NLND--------------G--------------------------------------SCAGLAFPALNVMSLQYHPEASP 406 (415)
T ss_pred eCCC--------------C--------------------------------------cEEEEEECCCCEEEEEcCCCCCC
Confidence 7 44 5 89999999999999999999987
Q ss_pred Cchh
Q 046651 243 TCYG 246 (392)
Q Consensus 243 t~~G 246 (392)
+++.
T Consensus 407 gp~D 410 (415)
T PLN02771 407 GPHD 410 (415)
T ss_pred CCCc
Confidence 7653
No 35
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.96 E-value=2.2e-29 Score=232.61 Aligned_cols=174 Identities=25% Similarity=0.328 Sum_probs=139.0
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----CchhHHHHHHHH
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIGICLRVLLE 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~gi~~~ll~~ 82 (392)
|+|||++.+|...+.+.|++ .|++++++++++ ++ .++|+||| ||++.+... .+.+ ..+++++
T Consensus 1 i~i~d~g~~~~~~~~~~l~~-~g~~v~v~~~~~----~l-------~~~d~iii-pG~~~~~~~~~~~~~~~-~~~~i~~ 66 (198)
T cd01748 1 IAIIDYGMGNLRSVANALER-LGAEVIITSDPE----EI-------LSADKLIL-PGVGAFGDAMANLRERG-LIEALKE 66 (198)
T ss_pred CEEEeCCCChHHHHHHHHHH-CCCeEEEEcChH----Hh-------ccCCEEEE-CCCCcHHHHHHHHHHcC-hHHHHHH
Confidence 58999999999999999998 799999988543 33 45999999 777776431 1112 2344544
Q ss_pred --cCCCCEEEEcHHHHHHHHH------------hCCeeeecCC------CceeceeEEEecCCcccccCCCCCCcceEEE
Q 046651 83 --CWDVPILGVCLGHQALGFV------------HGADIVHAPE------PVHGRLSEIVHNGDRLFHDIPSGQNSGFKVV 142 (392)
Q Consensus 83 --~~~iPILGVCLGhQ~La~a------------~Gg~V~~ape------p~hG~~s~i~h~g~~LF~~ips~~~s~f~Vv 142 (392)
..++||||||+|||+|+.+ +|++|.+.+. +++|+.......+++||+++|.. +++.
T Consensus 67 ~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~~~~~lf~~l~~~----~~v~ 142 (198)
T cd01748 67 AIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKESPLFKGIPDG----SYFY 142 (198)
T ss_pred HHHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEECCCChhhhCCCCC----CeEE
Confidence 2489999999999999998 7899999875 47898876667788999999988 9999
Q ss_pred eeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEE
Q 046651 143 RYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLM 222 (392)
Q Consensus 143 ryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vm 222 (392)
+||++.+.. |+.+..+|++++ + ..|
T Consensus 143 ~~Hs~~v~~---~~~~~~la~s~~--------------~--------------------------------------~~~ 167 (198)
T cd01748 143 FVHSYYAPP---DDPDYILATTDY--------------G--------------------------------------GKF 167 (198)
T ss_pred EEeEEEEec---CCcceEEEEecC--------------C--------------------------------------CeE
Confidence 999999974 445788998876 4 344
Q ss_pred EEEecCCCEEEEeccCCCCCCchhHHHHHHHH
Q 046651 223 GIMHSTRPHYGVQFHPESIATCYGSKILRNFR 254 (392)
Q Consensus 223 gi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~ 254 (392)
...+.++++||||||||+. +++|++|++||+
T Consensus 168 ~~~~~~~~i~GvQFHPE~~-~~~g~~~~~nf~ 198 (198)
T cd01748 168 PAAVEKDNIFGTQFHPEKS-GKAGLKLLKNFL 198 (198)
T ss_pred EEEEEcCCEEEEECCCccc-cHhHHHHHHhhC
Confidence 4456788999999999996 679999999994
No 36
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.96 E-value=3e-29 Score=233.93 Aligned_cols=186 Identities=28% Similarity=0.387 Sum_probs=155.3
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc-hhHHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTING-VPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED-IGICLRVLLE 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G-~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d-~gi~~~ll~~ 82 (392)
+++||+|++..|+.-|.+.+++ .| +.-+++.++.. .+++.. .++|+|||||||.|++.... ...+..+|++
T Consensus 2 ~~ilIld~g~q~~~li~r~~re-~g~v~~e~~~~~~~-~~~~~~-----~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~ 74 (198)
T COG0518 2 RKILILDFGGQYLGLIARRLRE-LGYVYSEIVPYTGD-AEELPL-----DSPDGIIISGGPMSVYDEDPWLPREKDLIKD 74 (198)
T ss_pred cEEEEEeCCCcHhHHHHHHHHH-cCCceEEEEeCCCC-cccccc-----cCCCEEEEcCCCCCCccccccchhHHHHHHH
Confidence 5799999999999999999997 67 77777777764 555543 56799999999998887542 4556677776
Q ss_pred c--CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEe-cCCcccccCCCCCCcce-EEEeeecceeecCCCCCCc
Q 046651 83 C--WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVH-NGDRLFHDIPSGQNSGF-KVVRYHSLIIDADSLPKEL 158 (392)
Q Consensus 83 ~--~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h-~g~~LF~~ips~~~s~f-~VvryHSl~V~~~sLP~~l 158 (392)
. .++||||||+|||+||.++||+|.+.+..+.|+...-.. ..+.||+++|.. + .|+.+|.+.++. ||+++
T Consensus 75 ~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~~~E~G~~~v~~~~~~~~l~~gl~~~----~~~v~~sH~D~v~~--lP~g~ 148 (198)
T COG0518 75 AGVPGKPVLGICLGHQLLAKALGGKVERGPKREIGWTPVELTEGDDPLFAGLPDL----FTTVFMSHGDTVVE--LPEGA 148 (198)
T ss_pred hCCCCCCEEEEChhHHHHHHHhCCEEeccCCCccceEEEEEecCccccccCCccc----cCccccchhCcccc--CCCCC
Confidence 4 355699999999999999999999999899998755333 334799999987 6 599999999998 99999
Q ss_pred EEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccC
Q 046651 159 IPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHP 238 (392)
Q Consensus 159 ~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHP 238 (392)
+++|.|+. + .++|+++. +++|||||||
T Consensus 149 ~vlA~s~~--------------c--------------------------------------p~qa~~~~-~~~~gvQFHp 175 (198)
T COG0518 149 VVLASSET--------------C--------------------------------------PNQAFRYG-KRAYGVQFHP 175 (198)
T ss_pred EEEecCCC--------------C--------------------------------------hhhheecC-CcEEEEeeee
Confidence 99999887 6 78899987 8999999999
Q ss_pred CCCCCchhHHHHHHHH-HHH
Q 046651 239 ESIATCYGSKILRNFR-EIT 257 (392)
Q Consensus 239 Esiat~~G~~I~~NF~-~l~ 257 (392)
|... ++|+++++||. +++
T Consensus 176 Ev~~-~~~~~~l~nf~~~i~ 194 (198)
T COG0518 176 EVTH-EYGEALLENFAHEIC 194 (198)
T ss_pred EEeH-HHHHHHHHHhhhhhc
Confidence 9955 89999999999 554
No 37
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=7.3e-29 Score=232.29 Aligned_cols=181 Identities=24% Similarity=0.317 Sum_probs=138.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCC--CeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-C---CchhHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGV--PPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-P---EDIGICL 77 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~--~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~---~d~gi~~ 77 (392)
.||++|||++.++..++.++|++ .|. ++.+++ . .+++ .++|+||| ||.|+... . ...+...
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~-~g~~~~v~~~~--~--~~~l-------~~~d~lIl-pG~~~~~~~~~~l~~~~~~~ 67 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALER-AGAGADVVVTA--D--PDAV-------AAADRVVL-PGVGAFADCMRGLRAVGLGE 67 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHH-cCCCccEEEEC--C--HHHh-------cCCCEEEE-CCCCcHHHHHHHHHHCCcHH
Confidence 48999999999999999999998 688 555553 2 3555 56999999 55444321 1 1123344
Q ss_pred HHHHHc--CCCCEEEEcHHHHHHHHH------------hCCeeeec-------CCCceeceeEEEecCCcccccCCCCCC
Q 046651 78 RVLLEC--WDVPILGVCLGHQALGFV------------HGADIVHA-------PEPVHGRLSEIVHNGDRLFHDIPSGQN 136 (392)
Q Consensus 78 ~ll~~~--~~iPILGVCLGhQ~La~a------------~Gg~V~~a-------pep~hG~~s~i~h~g~~LF~~ips~~~ 136 (392)
++++.. .++||||||+|||+|+.+ ++++|.+. +-|+.|+......++++||+++|..
T Consensus 68 ~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~~~~~lf~~~~~~-- 145 (209)
T PRK13146 68 AVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQTRDHPLFAGIPDG-- 145 (209)
T ss_pred HHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeCCCChhccCCCCC--
Confidence 555542 589999999999999999 88999886 2356887755445678899999988
Q ss_pred cceEEEeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccC
Q 046651 137 SGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRM 216 (392)
Q Consensus 137 s~f~VvryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 216 (392)
+.+.+|||+.+.. +| ...++|++++ +
T Consensus 146 --~~v~~~Hs~~v~~--~~-~~~~la~s~~--------------~----------------------------------- 171 (209)
T PRK13146 146 --ARFYFVHSYYAQP--AN-PADVVAWTDY--------------G----------------------------------- 171 (209)
T ss_pred --CEEEEEeEEEEEc--CC-CCcEEEEEcC--------------C-----------------------------------
Confidence 9999999999986 44 5688999876 3
Q ss_pred CcceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 217 RREVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 217 ~~~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
..++++. .+.++||||||||+. +++|.+|++||++++
T Consensus 172 --~~~~a~~-~~~~i~GvQFHPE~s-~~~G~~ll~nfl~~~ 208 (209)
T PRK13146 172 --GPFTAAV-ARDNLFATQFHPEKS-QDAGLALLRNFLAWL 208 (209)
T ss_pred --CEEEEEE-ecCCEEEEEcCCccc-HHHHHHHHHHHHhhc
Confidence 0455554 568999999999995 789999999999874
No 38
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.96 E-value=1.5e-28 Score=230.89 Aligned_cols=180 Identities=18% Similarity=0.233 Sum_probs=129.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-C---chhHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-E---DIGICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~---d~gi~~~l 79 (392)
.|||.|||...++-..+.++|+. .|.++++++++ +++ ..+|.||+ ||||++... . +.++...+
T Consensus 1 ~~~v~iid~~~GN~~sl~~al~~-~g~~v~vv~~~----~~l-------~~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i 67 (210)
T CHL00188 1 MMKIGIIDYSMGNLHSVSRAIQQ-AGQQPCIINSE----SEL-------AQVHALVL-PGVGSFDLAMKKLEKKGLITPI 67 (210)
T ss_pred CcEEEEEEcCCccHHHHHHHHHH-cCCcEEEEcCH----HHh-------hhCCEEEE-CCCCchHHHHHHHHHCCHHHHH
Confidence 37899999998999999999998 79999988653 343 34899886 999997521 1 12333333
Q ss_pred HHH-cCCCCEEEEcHHHHHHHHH-----------hCCeeeec------CCCceeceeEEEecC------CcccccCCCCC
Q 046651 80 LLE-CWDVPILGVCLGHQALGFV-----------HGADIVHA------PEPVHGRLSEIVHNG------DRLFHDIPSGQ 135 (392)
Q Consensus 80 l~~-~~~iPILGVCLGhQ~La~a-----------~Gg~V~~a------pep~hG~~s~i~h~g------~~LF~~ips~~ 135 (392)
.+. ..++||||||+|||+|+.. ++|+|.+. +-|+.|+......+. +.||+++|..
T Consensus 68 ~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~- 146 (210)
T CHL00188 68 KKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLN- 146 (210)
T ss_pred HHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCC-
Confidence 332 2489999999999999986 44566655 335566654322222 5699999988
Q ss_pred CcceEEEeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccccccccc
Q 046651 136 NSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNR 215 (392)
Q Consensus 136 ~s~f~VvryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 215 (392)
+.+++|||+.+.++ .+. ..++++.. +
T Consensus 147 ---~~v~~~HS~~v~p~-~~~--~l~~t~~~--------------~---------------------------------- 172 (210)
T CHL00188 147 ---PWAYFVHSYGVMPK-SQA--CATTTTFY--------------G---------------------------------- 172 (210)
T ss_pred ---CEEEEeCccEecCC-CCc--eEEEEEec--------------C----------------------------------
Confidence 99999999998532 122 23344333 1
Q ss_pred CCcceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHH
Q 046651 216 MRREVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 216 ~~~~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~ 255 (392)
.+..+|++++ .++||||||||+. +++|++|++||++
T Consensus 173 -~~~~v~a~~~--~~i~GvQFHPE~s-~~~G~~il~nfl~ 208 (210)
T CHL00188 173 -KQQMVAAIEY--DNIFAMQFHPEKS-GEFGLWLLREFMK 208 (210)
T ss_pred -CcceEEEEec--CCEEEEecCCccc-cHhHHHHHHHHHh
Confidence 0117999984 5999999999996 8999999999985
No 39
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=2.2e-28 Score=226.41 Aligned_cols=176 Identities=27% Similarity=0.312 Sum_probs=134.9
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----CchhHHHHHHHH
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIGICLRVLLE 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~gi~~~ll~~ 82 (392)
|+|||++.++...+.+.|+. .|++++++++ .+++ .++|+||+ ||+|++... .+.++. +.|++
T Consensus 2 i~vid~g~gn~~~~~~~l~~-~g~~v~~~~~----~~~l-------~~~d~lil-pG~g~~~~~~~~l~~~~~~-~~i~~ 67 (199)
T PRK13181 2 IAIIDYGAGNLRSVANALKR-LGVEAVVSSD----PEEI-------AGADKVIL-PGVGAFGQAMRSLRESGLD-EALKE 67 (199)
T ss_pred EEEEeCCCChHHHHHHHHHH-CCCcEEEEcC----hHHh-------ccCCEEEE-CCCCCHHHHHHHHHHCChH-HHHHH
Confidence 99999998899999999988 7999988854 2344 45899998 787776421 112333 33333
Q ss_pred --cCCCCEEEEcHHHHHHHHH-----------hCCeeeecCC-----CceeceeEEEecCCcccccCCCCCCcceEEEee
Q 046651 83 --CWDVPILGVCLGHQALGFV-----------HGADIVHAPE-----PVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRY 144 (392)
Q Consensus 83 --~~~iPILGVCLGhQ~La~a-----------~Gg~V~~ape-----p~hG~~s~i~h~g~~LF~~ips~~~s~f~Vvry 144 (392)
..++||||||+|||+|+.+ +|++|.+.+. +++|+.......+++||+++|.. ++++++
T Consensus 68 ~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~~~~~lf~~l~~~----~~~~~~ 143 (199)
T PRK13181 68 HVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPLKESPLFKGIEEG----SYFYFV 143 (199)
T ss_pred HHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCccccccCCCChhHcCCCCC----CEEEEe
Confidence 3489999999999999999 7899998764 57888655445678899999988 899999
Q ss_pred ecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEE
Q 046651 145 HSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGI 224 (392)
Q Consensus 145 HSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi 224 (392)
|++.+.. .+ .+.++|++++ + ..+..
T Consensus 144 Hs~~v~~--~~-~~~~lA~s~~--------------~--------------------------------------~~~~~ 168 (199)
T PRK13181 144 HSYYVPC--ED-PEDVLATTEY--------------G--------------------------------------VPFCS 168 (199)
T ss_pred CeeEecc--CC-cccEEEEEcC--------------C--------------------------------------CEEEE
Confidence 9999865 44 3568999876 3 23333
Q ss_pred EecCCCEEEEeccCCCCCCchhHHHHHHHHHH
Q 046651 225 MHSTRPHYGVQFHPESIATCYGSKILRNFREI 256 (392)
Q Consensus 225 ~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l 256 (392)
.+.++++||||||||+. +++|+.||+||+++
T Consensus 169 ~~~~~~i~GvQFHPE~~-~~~g~~ll~nfl~~ 199 (199)
T PRK13181 169 AVAKDNIYAVQFHPEKS-GKAGLKLLKNFAEL 199 (199)
T ss_pred EEECCCEEEEECCCccC-CHHHHHHHHHHHhC
Confidence 33467899999999985 78999999999863
No 40
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=3.9e-28 Score=225.51 Aligned_cols=174 Identities=24% Similarity=0.358 Sum_probs=132.0
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-C---chhHHHHHHHH
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-E---DIGICLRVLLE 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~---d~gi~~~ll~~ 82 (392)
++|||++.++..++.+.|++ .|.+++++++++ ++ ..+|+||| ||+|++... . ..++...+++.
T Consensus 2 i~iid~g~~n~~~v~~~l~~-~g~~~~~~~~~~----~l-------~~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~ 68 (201)
T PRK13152 2 IALIDYKAGNLNSVAKAFEK-IGAINFIAKNPK----DL-------QKADKLLL-PGVGSFKEAMKNLKELGFIEALKEQ 68 (201)
T ss_pred EEEEECCCCcHHHHHHHHHH-CCCeEEEECCHH----HH-------cCCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999999998 699988887643 44 35899999 999998542 1 12343444432
Q ss_pred --cCCCCEEEEcHHHHHHHHH------------hCCeeeecCC------CceeceeEEE-ecCCcccccCCCCCCcceEE
Q 046651 83 --CWDVPILGVCLGHQALGFV------------HGADIVHAPE------PVHGRLSEIV-HNGDRLFHDIPSGQNSGFKV 141 (392)
Q Consensus 83 --~~~iPILGVCLGhQ~La~a------------~Gg~V~~ape------p~hG~~s~i~-h~g~~LF~~ips~~~s~f~V 141 (392)
..++||||||+|||+|+.+ ++++|.+.+. ++.|+ ..|. ..+++||+++|.. +++
T Consensus 69 ~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~-~~v~~~~~~~l~~~l~~~----~~~ 143 (201)
T PRK13152 69 VLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGW-NELEILKQSPLYQGIPEK----SDF 143 (201)
T ss_pred HHhCCCcEEEECHhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCe-EEEEECCCChhhhCCCCC----CeE
Confidence 2489999999999999997 1277876542 23344 4444 5688999999887 899
Q ss_pred EeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceE
Q 046651 142 VRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVL 221 (392)
Q Consensus 142 vryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 221 (392)
+++||+.+.. ++ +..+|++.+ + ..++
T Consensus 144 ~~vHS~~v~~--~~--~~v~a~~~~--------------g------------------------------------~~~~ 169 (201)
T PRK13152 144 YFVHSFYVKC--KD--EFVSAKAQY--------------G------------------------------------HKFV 169 (201)
T ss_pred EEEcccEeec--CC--CcEEEEECC--------------C------------------------------------CEEE
Confidence 9999999975 33 456788776 3 0155
Q ss_pred EEEEecCCCEEEEeccCCCCCCchhHHHHHHHHH
Q 046651 222 MGIMHSTRPHYGVQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 222 mgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~ 255 (392)
++++ ..++||||||||+. +++|++||+||++
T Consensus 170 ~a~~--~~~i~GvQFHPE~~-~~~g~~ll~~Fl~ 200 (201)
T PRK13152 170 ASLQ--KDNIFATQFHPEKS-QNLGLKLLENFAR 200 (201)
T ss_pred EEEe--cCCEEEEeCCCeec-ChhhHHHHHHHHh
Confidence 5665 56899999999994 6799999999986
No 41
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.95 E-value=1.1e-27 Score=222.54 Aligned_cols=179 Identities=27% Similarity=0.339 Sum_probs=138.3
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC----chhHHHHHHH
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE----DIGICLRVLL 81 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~----d~gi~~~ll~ 81 (392)
+++|||+..+|..++.+.|++ .|+++.+++++ +++ .++|+||| ||++.+.... ..++ .++|+
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~-~G~~v~~~~~~----~~l-------~~~d~iii-pG~~~~~~~~~~~~~~~~-~~~i~ 66 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALER-LGAEAVITSDP----EEI-------LAADGVIL-PGVGAFPDAMANLRERGL-DEVIK 66 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHH-CCCeEEEECCH----HHh-------ccCCEEEE-CCCCchHHHHHHHHHcCh-HHHHH
Confidence 589999999999999999998 69999988653 344 45999999 5656543211 1122 34444
Q ss_pred H--cCCCCEEEEcHHHHHHHHH------------hCCeeeecCC------CceeceeEEEecCCcccccCCCCCCcceEE
Q 046651 82 E--CWDVPILGVCLGHQALGFV------------HGADIVHAPE------PVHGRLSEIVHNGDRLFHDIPSGQNSGFKV 141 (392)
Q Consensus 82 ~--~~~iPILGVCLGhQ~La~a------------~Gg~V~~ape------p~hG~~s~i~h~g~~LF~~ips~~~s~f~V 141 (392)
+ ..++||||||+|||+|+.. +|++|.+.+. ++.|.......++++||+++|.. +.+
T Consensus 67 ~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~~~~~l~~~l~~~----~~v 142 (205)
T PRK13141 67 EAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELKKESPLLKGIPDG----AYV 142 (205)
T ss_pred HHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeCCCChhhhCCCCC----CEE
Confidence 4 2589999999999999997 6799988762 34566544345688999999988 899
Q ss_pred EeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceE
Q 046651 142 VRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVL 221 (392)
Q Consensus 142 vryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 221 (392)
.++|++.+. +|+++.++|++++ + ..+
T Consensus 143 ~~~Hs~~v~---~~~~~~v~a~~~~--------------~-------------------------------------~~~ 168 (205)
T PRK13141 143 YFVHSYYAD---PCDEEYVAATTDY--------------G-------------------------------------VEF 168 (205)
T ss_pred EEECeeEec---cCCcCeEEEEEeC--------------C-------------------------------------cEE
Confidence 999999995 5678889998765 2 157
Q ss_pred EEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHHH
Q 046651 222 MGIMHSTRPHYGVQFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 222 mgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
+++. .++++||||||||+. .+.|++||+||++++.
T Consensus 169 ~a~~-~~~~i~GvQfHPE~~-~~~g~~l~~~fl~~~~ 203 (205)
T PRK13141 169 PAAV-GKDNVFGAQFHPEKS-GDVGLKILKNFVEMVE 203 (205)
T ss_pred EEEE-ecCCEEEEeCCCccc-hHHHHHHHHHHHHHhh
Confidence 7775 467999999999994 5789999999999874
No 42
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.95 E-value=1.3e-27 Score=230.22 Aligned_cols=184 Identities=19% Similarity=0.242 Sum_probs=134.9
Q ss_pred HHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCC--------CCCch-----hHHHHHHHH--cC
Q 046651 20 IYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPA--------CPEDI-----GICLRVLLE--CW 84 (392)
Q Consensus 20 l~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~--------~~~d~-----gi~~~ll~~--~~ 84 (392)
.++.+.. +|..|+.++....+.+.+..++ ..+|||||+|||.+.. ..... ....++++. ..
T Consensus 31 y~~~i~~-aGg~pv~lp~~~~~~~~~~~~l---~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~ 106 (254)
T PRK11366 31 YLNAIIH-AGGLPIALPHALAEPSLLEQLL---PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALER 106 (254)
T ss_pred HHHHHHH-CCCEEEEecCCCCCHHHHHHHH---HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHC
Confidence 4566666 6777878875432233444444 5699999999987552 11111 234566665 25
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeec----CCC-ceec------------eeEEEecCCcccccCCCCCCcceEEEeeecc
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHA----PEP-VHGR------------LSEIVHNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~a----pep-~hG~------------~s~i~h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
++||||||+|||+|+.++||+|.+. ++. .|+. ...|..+...++..+..+. ..+.|.+||++
T Consensus 107 ~~PILGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~~-~~~~Vns~H~q 185 (254)
T PRK11366 107 RIPIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPEC-SNFWVNSLHGQ 185 (254)
T ss_pred CCCEEEECHhHHHHHHHhCCeEeecccccccccccccCCccccccccCCceEEEECCCCcHHHhcCCC-ceEEeehHHHH
Confidence 9999999999999999999999975 222 2221 3456666666676663211 12889999999
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.|+. ||++++++||+++ + ++|||++.
T Consensus 186 ~V~~--l~~gl~v~A~s~d--------------g--------------------------------------~ieAie~~ 211 (254)
T PRK11366 186 GAKV--VSPRLRVEARSPD--------------G--------------------------------------LVEAVSVI 211 (254)
T ss_pred HHhh--cccceEEEEEcCC--------------C--------------------------------------cEEEEEeC
Confidence 9987 9999999999988 7 99999999
Q ss_pred CCCE-EEEeccCCCCCCchh--HHHHHHHHHHHHHhhh
Q 046651 228 TRPH-YGVQFHPESIATCYG--SKILRNFREITEDYWK 262 (392)
Q Consensus 228 ~~P~-~GVQFHPEsiat~~G--~~I~~NF~~l~~~~~~ 262 (392)
++++ ||||||||+..++++ ++||+||++.++++..
T Consensus 212 ~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~~~ 249 (254)
T PRK11366 212 NHPFALGVQWHPEWNSSEYALSRILFEGFITACQHHIA 249 (254)
T ss_pred CCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 9885 999999999988887 8999999999976543
No 43
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.95 E-value=3.5e-27 Score=219.15 Aligned_cols=180 Identities=28% Similarity=0.331 Sum_probs=133.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-CCchhHHHHHHHH-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-PEDIGICLRVLLE- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~~d~gi~~~ll~~- 82 (392)
||++|||++.++...+.++|+. .|.+++++++ .+++ ..||+||| ||++.+.. ..++....+.+++
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~-~G~~~~~~~~----~~~~-------~~~d~iii-~G~~~~~~~~~~~~~~~~~i~~~ 67 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALER-AGAEVVITSD----PEEI-------LDADGIVL-PGVGAFGAAMENLSPLRDVILEA 67 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHH-CCCeEEEECC----HHHH-------ccCCEEEE-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998 7999988753 2343 46999999 55554432 2223334455554
Q ss_pred -cCCCCEEEEcHHHHHHHHH------------hCCeeeecCC----CceeceeEEEecCCcccccCCCCCCcceEEEeee
Q 046651 83 -CWDVPILGVCLGHQALGFV------------HGADIVHAPE----PVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYH 145 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a------------~Gg~V~~ape----p~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryH 145 (392)
..++||||||+|||+|+.+ +|++|.+.+. +..|..+.....+++||++++ + +.++++|
T Consensus 68 ~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~~~~~l~~~l~-~----~~~~~~H 142 (200)
T PRK13143 68 ARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVVKDCPLFEGID-G----EYVYFVH 142 (200)
T ss_pred HHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEcCCChhhccCC-C----cEEEEEe
Confidence 3589999999999999986 6888887654 344655433346778999984 3 5688899
Q ss_pred cceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEE
Q 046651 146 SLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIM 225 (392)
Q Consensus 146 Sl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~ 225 (392)
++.+. +++.+.++||+++ + ..++++.
T Consensus 143 s~~~~---~~~~~~~la~~~~--------------~-------------------------------------~~~~~~~ 168 (200)
T PRK13143 143 SYYAY---PDDEDYVVATTDY--------------G-------------------------------------IEFPAAV 168 (200)
T ss_pred eeeeC---CCCcceEEEEEcC--------------C-------------------------------------CEEEEEE
Confidence 99886 5567899999976 3 0333333
Q ss_pred ecCCCEEEEeccCCCCCCchhHHHHHHHHHHHH
Q 046651 226 HSTRPHYGVQFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 226 h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
.+.++||+|||||+ .++.|++||+||++++.
T Consensus 169 -~~~~~~gvQfHPE~-~~~~g~~i~~~f~~~~~ 199 (200)
T PRK13143 169 -CNDNVFGTQFHPEK-SGETGLKILENFVELIK 199 (200)
T ss_pred -EcCCEEEEeCCCcc-chHHHHHHHHHHHHHHh
Confidence 35699999999999 46789999999998863
No 44
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.95 E-value=2.4e-27 Score=234.89 Aligned_cols=185 Identities=28% Similarity=0.397 Sum_probs=147.9
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
..+|++||. ..++||.+.|.. -|+.++||+++.. .+|+.. ..+|||+||.|||+|... ......+++
T Consensus 179 ~~~Vv~iD~--GvK~nIlr~L~~-rg~~vtVVP~~t~-~eeIl~-----~~pDGiflSNGPGDP~~~---~~~i~~ik~l 246 (368)
T COG0505 179 GKHVVVIDF--GVKRNILRELVK-RGCRVTVVPADTS-AEEILA-----LNPDGIFLSNGPGDPAPL---DYAIETIKEL 246 (368)
T ss_pred CcEEEEEEc--CccHHHHHHHHH-CCCeEEEEcCCCC-HHHHHh-----hCCCEEEEeCCCCChhHH---HHHHHHHHHH
Confidence 468999998 789999999998 5999999999985 899887 679999999999999542 223333333
Q ss_pred -cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 83 -CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
...|||+|||||||+|+.|+||+..++.-++||-+.++ +++-+++. .-..+.|.+.|+++++++..+++
T Consensus 247 ~~~~iPifGICLGHQllalA~Ga~T~KmkFGHrG~NhPV--------~dl~tgrv--~ITSQNHGyaVd~~s~~~~~~vt 316 (368)
T COG0505 247 LGTKIPIFGICLGHQLLALALGAKTYKMKFGHRGANHPV--------KDLDTGRV--YITSQNHGYAVDEDSLVETLKVT 316 (368)
T ss_pred hccCCCeEEEcHHHHHHHHhcCCceeecccCCCCCCcCc--------ccccCCeE--EEEecCCceecChhhcCCCceeE
Confidence 22679999999999999999999999999999988765 23334431 23358999999998888754344
Q ss_pred EEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCC
Q 046651 162 AWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241 (392)
Q Consensus 162 Awt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsi 241 (392)
-++-. |+ .++||+|.+.|+|+||||||..
T Consensus 317 h~nln-------------Dg--------------------------------------TvEGi~h~~~P~fSVQ~HPEAs 345 (368)
T COG0505 317 HVNLN-------------DG--------------------------------------TVEGIRHKDLPAFSVQYHPEAS 345 (368)
T ss_pred EEeCC-------------CC--------------------------------------CccceecCCCceEEEccCCCCC
Confidence 33322 13 8999999999999999999998
Q ss_pred CCch-hHHHHHHHHHHHHHhh
Q 046651 242 ATCY-GSKILRNFREITEDYW 261 (392)
Q Consensus 242 at~~-G~~I~~NF~~l~~~~~ 261 (392)
.+++ -+.||+.|++++..+.
T Consensus 346 PGPhDt~ylFd~Fi~~~~~~~ 366 (368)
T COG0505 346 PGPHDTRYLFDEFIELMEAAK 366 (368)
T ss_pred CCCcccHHHHHHHHHHHHHhh
Confidence 8776 5899999999998753
No 45
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.95 E-value=6e-27 Score=216.94 Aligned_cols=176 Identities=24% Similarity=0.290 Sum_probs=135.1
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-chhH--HHHHHHH-
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DIGI--CLRVLLE- 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~gi--~~~ll~~- 82 (392)
|+|||+...|...|.+.|+. .|++++|+++++ ++ ..+|+||| ||+|++.... ++.. ...++++
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~-~g~~v~v~~~~~----~l-------~~~d~lii-~G~~~~~~~~~~l~~~~~~~l~~~~ 67 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKR-VGAEPVVVKDSK----EA-------ELADKLIL-PGVGAFGAAMARLRENGLDLFVELV 67 (196)
T ss_pred CEEEecCCcHHHHHHHHHHH-CCCcEEEEcCHH----Hh-------ccCCEEEE-CCCCCHHHHHHHHHHcCcHHHHHHH
Confidence 58999999999999999998 799999998653 33 45999999 7888765321 1111 1233232
Q ss_pred -cCCCCEEEEcHHHHHHHHH------------hCCeeeecC---CCceeceeEEEecCCcccccCCCCCCcceEEEeeec
Q 046651 83 -CWDVPILGVCLGHQALGFV------------HGADIVHAP---EPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHS 146 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a------------~Gg~V~~ap---ep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHS 146 (392)
..++||||||+|||+|+.+ +|++|.+.+ .+.+|+.......+++||+++|.. +.+++||+
T Consensus 68 ~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~----~~v~~~Hs 143 (196)
T TIGR01855 68 VRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPVKESPLLNGIDEG----AYFYFVHS 143 (196)
T ss_pred HhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccCeeeeeCCCChHHhCCCCC----CEEEEECe
Confidence 2489999999999999999 789998875 457777665556778899999988 99999999
Q ss_pred ceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEe
Q 046651 147 LIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMH 226 (392)
Q Consensus 147 l~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h 226 (392)
+.+.. .| + ..+|++++ + ..+...+
T Consensus 144 ~~v~~--~~-~-~~~a~~~~--------------g--------------------------------------~~~~~~~ 167 (196)
T TIGR01855 144 YYAVC--EE-E-AVLAYADY--------------G--------------------------------------EKFPAAV 167 (196)
T ss_pred eEecC--CC-C-cEEEEEcC--------------C--------------------------------------cEEEEEE
Confidence 99975 44 4 46777765 3 3444455
Q ss_pred cCCCEEEEeccCCCCCCchhHHHHHHHHHH
Q 046651 227 STRPHYGVQFHPESIATCYGSKILRNFREI 256 (392)
Q Consensus 227 ~~~P~~GVQFHPEsiat~~G~~I~~NF~~l 256 (392)
.++++||+|||||+. +++|++|++||+++
T Consensus 168 ~~~~i~GvQFHPE~~-~~~g~~ll~~f~~~ 196 (196)
T TIGR01855 168 QKGNIFGTQFHPEKS-GKTGLKLLENFLEL 196 (196)
T ss_pred ecCCEEEEECCCccC-cHhHHHHHHHHHhC
Confidence 778999999999985 68999999999863
No 46
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.94 E-value=3.8e-26 Score=218.38 Aligned_cols=177 Identities=22% Similarity=0.260 Sum_probs=134.3
Q ss_pred CccEEEEEECCC-CchHHHHHHHHHhCCCCeEEEeCCC--CCHHHHHhhhcccCCcCEEEECCCCCCCCCCCch-hHHHH
Q 046651 3 EFVRTLLIDNYD-SYTYNIYQELSTINGVPPVVVRNDE--WTWRDICRYLYEENAFDNIVISPGPGSPACPEDI-GICLR 78 (392)
Q Consensus 3 ~~~r~LlIDnyD-SyT~nl~q~L~~v~G~~pvVV~nd~--~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~-gi~~~ 78 (392)
..||+|+|.|++ ++..+|.+.|.+ .|.++.++++.. ...+++ ..||+|||+|||+++++..++ ..+.+
T Consensus 6 ~~~~vlvi~h~~~~~~g~l~~~l~~-~g~~~~v~~~~~~~~~p~~l-------~~~dgvii~Ggp~~~~d~~~wi~~~~~ 77 (239)
T PRK06490 6 DKRPVLIVLHQERSTPGRVGQLLQE-RGYPLDIRRPRLGDPLPDTL-------EDHAGAVIFGGPMSANDPDDFIRREID 77 (239)
T ss_pred CCceEEEEecCCCCCChHHHHHHHH-CCCceEEEeccCCCCCCCcc-------cccCEEEEECCCCCCCCCchHHHHHHH
Confidence 458999999997 689999999987 799999887642 112232 569999999999999875543 22346
Q ss_pred HHHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCC--ceeceeEEEec-CCcccccCCCCCCcceEEEeeecceeecCC
Q 046651 79 VLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEP--VHGRLSEIVHN-GDRLFHDIPSGQNSGFKVVRYHSLIIDADS 153 (392)
Q Consensus 79 ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep--~hG~~s~i~h~-g~~LF~~ips~~~s~f~VvryHSl~V~~~s 153 (392)
+|++ ..++||||||+|||+|+.++||+|.+.+.+ ..|+. .|..+ ...++.++| ..+..+|++.+ .
T Consensus 78 ~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~~-~i~~~~~~~~~~~~~------~~~~~~H~d~~-~-- 147 (239)
T PRK06490 78 WISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGYY-PLRPTEAGRALMHWP------EMVYHWHREGF-D-- 147 (239)
T ss_pred HHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCCCccceE-EeEECCCcccccCCC------CEEEEECCccc-c--
Confidence 6654 258999999999999999999999998754 45654 44433 334454443 45788999983 3
Q ss_pred CCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEE
Q 046651 154 LPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYG 233 (392)
Q Consensus 154 LP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~G 233 (392)
||++++++|.+++ + .+|++++. .++||
T Consensus 148 lP~~~~~LA~s~~--------------~--------------------------------------~~qa~~~~-~~v~g 174 (239)
T PRK06490 148 LPAGAELLATGDD--------------F--------------------------------------PNQAFRYG-DNAWG 174 (239)
T ss_pred CCCCCEEEEeCCC--------------C--------------------------------------CeEEEEeC-CCEEE
Confidence 9999999999887 7 78999974 47999
Q ss_pred EeccCCCCCCchhHHHHHHHHH
Q 046651 234 VQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 234 VQFHPEsiat~~G~~I~~NF~~ 255 (392)
+|||||+. .+++++|.+
T Consensus 175 ~QfHPE~~-----~~~~~~~i~ 191 (239)
T PRK06490 175 LQFHPEVT-----RAMMHRWVV 191 (239)
T ss_pred EeeCccCC-----HHHHHHHHH
Confidence 99999983 466776654
No 47
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.94 E-value=6.8e-27 Score=215.42 Aligned_cols=154 Identities=25% Similarity=0.313 Sum_probs=124.4
Q ss_pred CCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--------------CCchhHHHH
Q 046651 13 YDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--------------PEDIGICLR 78 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--------------~~d~gi~~~ 78 (392)
+|++++++.++|.. .|..+++++++.. .+++...+ ..+|+|||+|||+.... +.......+
T Consensus 17 ~~~~~~~~~~~l~~-~G~~~~iv~~~~~-~~~~~~~l---~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 91 (189)
T cd01745 17 RDYLNQYYVDAVRK-AGGLPVLLPPVDD-EEDLEQYL---ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELA 91 (189)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEeCCCCC-hHHHHHHH---hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHH
Confidence 56788999999998 7999999988864 45544434 57999999999975321 111123345
Q ss_pred HHHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCC
Q 046651 79 VLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPK 156 (392)
Q Consensus 79 ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~ 156 (392)
+++. ..++||||||+|||+|+.++||+|.+.+ +|.++|++.|.. +|+
T Consensus 92 ~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~-----------------------------~v~~~H~~~v~~--~~~ 140 (189)
T cd01745 92 LLRAALERGKPILGICRGMQLLNVALGGTLYQDI-----------------------------RVNSLHHQAIKR--LAD 140 (189)
T ss_pred HHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCC-----------------------------ceechHHHHHhh--cCC
Confidence 5554 2489999999999999999999997764 377899999987 999
Q ss_pred CcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecC-CCEEEEe
Q 046651 157 ELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHST-RPHYGVQ 235 (392)
Q Consensus 157 ~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~-~P~~GVQ 235 (392)
+++++|++++ + .+||+++.+ .++||+|
T Consensus 141 ~~~vla~~~d--------------~--------------------------------------~vea~~~~~~~~~~gvQ 168 (189)
T cd01745 141 GLRVEARAPD--------------G--------------------------------------VIEAIESPDRPFVLGVQ 168 (189)
T ss_pred CCEEEEECCC--------------C--------------------------------------cEEEEEeCCCCeEEEEe
Confidence 9999999877 6 899999987 7999999
Q ss_pred ccCCCCCC--chhHHHHHHHH
Q 046651 236 FHPESIAT--CYGSKILRNFR 254 (392)
Q Consensus 236 FHPEsiat--~~G~~I~~NF~ 254 (392)
||||+..+ +.|++||+||.
T Consensus 169 fHPE~~~~~~~~~~~if~~f~ 189 (189)
T cd01745 169 WHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred cCCCcCcccCchHhHHHHHhC
Confidence 99999888 88999999994
No 48
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.94 E-value=7.1e-26 Score=212.83 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=129.1
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----CchhHHHHHHHH
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIGICLRVLLE 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~gi~~~ll~~ 82 (392)
+.|||..-++-+++.++|.+ .+.++++++. .+++ ..+|.||+ ||+|++... ...++...+++.
T Consensus 2 i~iidyg~gNl~s~~~al~~-~~~~~~~~~~----~~~l-------~~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~ 68 (210)
T PRK14004 2 IAILDYGMGNIHSCLKAVSL-YTKDFVFTSD----PETI-------ENSKALIL-PGDGHFDKAMENLNSTGLRSTIDKH 68 (210)
T ss_pred EEEEECCCchHHHHHHHHHH-cCCeEEEECC----HHHh-------ccCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999999988 6888876632 3454 35899885 888987431 112433333332
Q ss_pred -cCCCCEEEEcHHHHHHHHHhC------------------Ceeeec-----CCCceeceeEEE--ecCCcccccCCCCCC
Q 046651 83 -CWDVPILGVCLGHQALGFVHG------------------ADIVHA-----PEPVHGRLSEIV--HNGDRLFHDIPSGQN 136 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~G------------------g~V~~a-----pep~hG~~s~i~--h~g~~LF~~ips~~~ 136 (392)
..++||||||+|||+|+.+.+ ++|.+. +-|+.|+..... .++++||+++|..
T Consensus 69 ~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~-- 146 (210)
T PRK14004 69 VESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRRKDKSKLLKGIGDQ-- 146 (210)
T ss_pred HHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceeccCCCCccccCCCCC--
Confidence 359999999999999999753 666653 346788875432 2577899999988
Q ss_pred cceEEEeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccC
Q 046651 137 SGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRM 216 (392)
Q Consensus 137 s~f~VvryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 216 (392)
+.|++|||+.++ .++.+..++++.+. +
T Consensus 147 --~~v~~~HS~~~~---~~~~l~~sa~~~~~-------------g----------------------------------- 173 (210)
T PRK14004 147 --SFFYFIHSYRPT---GAEGNAITGLCDYY-------------Q----------------------------------- 173 (210)
T ss_pred --CEEEEeceeecC---CCCcceEEEeeeEC-------------C-----------------------------------
Confidence 999999999653 23445556665441 1
Q ss_pred CcceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHH
Q 046651 217 RREVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREI 256 (392)
Q Consensus 217 ~~~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l 256 (392)
..++++. .+.++||+|||||+.. ++|.+|++||+++
T Consensus 174 --~~~~a~~-~~~~i~GvQFHPE~s~-~~G~~iL~nfl~~ 209 (210)
T PRK14004 174 --EKFPAVV-EKENIFGTQFHPEKSH-THGLKLLENFIEF 209 (210)
T ss_pred --EEEEEEE-ecCCEEEEeCCcccCc-hhHHHHHHHHHhh
Confidence 1344444 7889999999999977 6999999999875
No 49
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.93 E-value=2e-25 Score=203.75 Aligned_cols=175 Identities=26% Similarity=0.358 Sum_probs=134.8
Q ss_pred EEEEEECCCCc-hHHHHHHHHHhCC---CCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCC-CCC-CchhHHHHH
Q 046651 6 RTLLIDNYDSY-TYNIYQELSTING---VPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP-ACP-EDIGICLRV 79 (392)
Q Consensus 6 r~LlIDnyDSy-T~nl~q~L~~v~G---~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp-~~~-~d~gi~~~l 79 (392)
|++||++.+.- ..++.++|+. .| .++++++.+.... . .+...||+|||+|||.++ ... ..+....++
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~---~---~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~ 73 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLRE-AGAETIEIDVVDVYAGEL---L---PDLDDYDGLVILGGPMSVDEDDYPWLKKLKEL 73 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHh-cCCCCceEEEEecCCCCC---C---CCcccCCEEEECCCCccCCccCChHHHHHHHH
Confidence 57888776543 4567777777 67 6888888776532 1 122679999999999988 322 223344556
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCC-ceeceeEEEec----CCcccccCCCCCCcceEEEeeecceeecC
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVHGADIVHAPEP-VHGRLSEIVHN----GDRLFHDIPSGQNSGFKVVRYHSLIIDAD 152 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep-~hG~~s~i~h~----g~~LF~~ips~~~s~f~VvryHSl~V~~~ 152 (392)
|++ ..++|+||||+|||+|+.++||+|.+.+.. ..|. ..+..+ ...+|+++|.. +.+.++|++.|..
T Consensus 74 i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g~-~~v~~~~~~~~~~l~~~~~~~----~~v~~~H~~~v~~- 147 (188)
T cd01741 74 IRQALAAGKPVLGICLGHQLLARALGGKVGRNPKGWEIGW-FPVTLTEAGKADPLFAGLPDE----FPVFHWHGDTVVE- 147 (188)
T ss_pred HHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCcceeEE-EEEEeccccccCchhhcCCCc----ceEEEEeccChhh-
Confidence 655 258999999999999999999999999876 4554 444432 35688888877 9999999999987
Q ss_pred CCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEE
Q 046651 153 SLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY 232 (392)
Q Consensus 153 sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~ 232 (392)
||++++++|++++ + .++++++. .++|
T Consensus 148 -lp~~~~~la~~~~--------------~--------------------------------------~v~~~~~~-~~~~ 173 (188)
T cd01741 148 -LPPGAVLLASSEA--------------C--------------------------------------PNQAFRYG-DRAL 173 (188)
T ss_pred -CCCCCEEeecCCC--------------C--------------------------------------CcceEEec-CCEE
Confidence 9999999999987 6 78999875 7899
Q ss_pred EEeccCCCCCCchhHHHHHHHH
Q 046651 233 GVQFHPESIATCYGSKILRNFR 254 (392)
Q Consensus 233 GVQFHPEsiat~~G~~I~~NF~ 254 (392)
|+||||| .+|++||+
T Consensus 174 g~QfHPE-------~~~~~~f~ 188 (188)
T cd01741 174 GLQFHPE-------ERLLRNFL 188 (188)
T ss_pred EEccCch-------HHHHhhhC
Confidence 9999999 79999984
No 50
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.93 E-value=2.2e-25 Score=212.64 Aligned_cols=173 Identities=25% Similarity=0.337 Sum_probs=131.1
Q ss_pred ECCCCchHHHHHHHHHhCCCCeEEEeCCCCC-HHHHHhhhcccCCcCEEEECCCCCCCCCCCch-hHHHHHHHH--cCCC
Q 046651 11 DNYDSYTYNIYQELSTINGVPPVVVRNDEWT-WRDICRYLYEENAFDNIVISPGPGSPACPEDI-GICLRVLLE--CWDV 86 (392)
Q Consensus 11 DnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~-~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~-gi~~~ll~~--~~~i 86 (392)
++|++|...+.+.+.. .|.+..+++..+.. ..++ ..||+|||+|||.+.++...+ .-+.++|++ ..++
T Consensus 18 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~-------~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~ 89 (237)
T PRK09065 18 ARYGDFPHWIRVALGL-AEQPVVVVRVFAGEPLPAP-------DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGM 89 (237)
T ss_pred hhcCCHHHHHHHHhcc-CCceEEEEeccCCCCCCCh-------hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCC
Confidence 4567777777777765 68888877666531 1122 569999999999987664322 334555655 2489
Q ss_pred CEEEEcHHHHHHHHHhCCeeeecCC-CceeceeEEEec---CCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEE
Q 046651 87 PILGVCLGHQALGFVHGADIVHAPE-PVHGRLSEIVHN---GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162 (392)
Q Consensus 87 PILGVCLGhQ~La~a~Gg~V~~ape-p~hG~~s~i~h~---g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iA 162 (392)
||||||+|||+|+.++||+|.+.+. .++|......+. .++||.++|.. |.|..+|++.|.. ||++++++|
T Consensus 90 PvlGIC~G~Qlla~alGg~V~~~~~g~e~G~~~v~~~~~~~~~~l~~~~~~~----~~v~~~H~d~v~~--lp~~~~~la 163 (237)
T PRK09065 90 PLLGICYGHQLLAHALGGEVGYNPAGRESGTVTVELHPAAADDPLFAGLPAQ----FPAHLTHLQSVLR--LPPGAVVLA 163 (237)
T ss_pred CEEEEChhHHHHHHHcCCccccCCCCCccceEEEEEccccccChhhhcCCcc----CcEeeehhhhhhh--CCCCCEEEE
Confidence 9999999999999999999999876 456765433232 46799999887 9999999999987 999999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
.+++ + .++|+++.+ ++||+|||||.
T Consensus 164 ~s~~--------------~--------------------------------------~iqa~~~~~-~i~gvQfHPE~-- 188 (237)
T PRK09065 164 RSAQ--------------D--------------------------------------PHQAFRYGP-HAWGVQFHPEF-- 188 (237)
T ss_pred cCCC--------------C--------------------------------------CeeEEEeCC-CEEEEEeCCcC--
Confidence 9887 6 789999865 69999999997
Q ss_pred CchhHHHHHHHHH
Q 046651 243 TCYGSKILRNFRE 255 (392)
Q Consensus 243 t~~G~~I~~NF~~ 255 (392)
...+++++++
T Consensus 189 ---~~~~~~~~~~ 198 (237)
T PRK09065 189 ---TAHIMRAYLR 198 (237)
T ss_pred ---CHHHHHHHHH
Confidence 2456666655
No 51
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.93 E-value=3.9e-25 Score=205.14 Aligned_cols=180 Identities=26% Similarity=0.349 Sum_probs=137.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-C---CchhHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-P---EDIGICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~---~d~gi~~~l 79 (392)
.|+|+|||....+.+++..+|++ .|.+++|..+ .+++ ...|.||+ ||-|+... . ...++ .+.
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler-~G~~~~vs~d----~~~i-------~~AD~liL-PGVGaf~~am~~L~~~gl-~~~ 66 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALER-LGAEVVVSRD----PEEI-------LKADKLIL-PGVGAFGAAMANLRERGL-IEA 66 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHH-cCCeeEEecC----HHHH-------hhCCEEEe-cCCCCHHHHHHHHHhcch-HHH
Confidence 38899999998899999999999 6988876543 3555 34899999 99998653 2 22343 344
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHH------------hCCeeeecC-----CCceeceeEEEecCCcccccCCCCCCcceE
Q 046651 80 LLE--CWDVPILGVCLGHQALGFV------------HGADIVHAP-----EPVHGRLSEIVHNGDRLFHDIPSGQNSGFK 140 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a------------~Gg~V~~ap-----ep~hG~~s~i~h~g~~LF~~ips~~~s~f~ 140 (392)
|++ ..++|+||||||||+|... ..|+|.+.+ -|+.||++....++++||++|+.+ -.
T Consensus 67 i~~~~~~~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~~----~~ 142 (204)
T COG0118 67 IKEAVESGKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFVRGHPLFKGIPDG----AY 142 (204)
T ss_pred HHHHHhcCCCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccceeeccCCChhhcCCCCC----CE
Confidence 444 2369999999999999985 236777654 478999987555889999999997 57
Q ss_pred EEeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcce
Q 046651 141 VVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREV 220 (392)
Q Consensus 141 VvryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 220 (392)
+++-|||.+.+ .. .=.+++++++ + ...
T Consensus 143 ~YFVHSY~~~~--~~-~~~v~~~~~Y--------------G------------------------------------~~f 169 (204)
T COG0118 143 FYFVHSYYVPP--GN-PETVVATTDY--------------G------------------------------------EPF 169 (204)
T ss_pred EEEEEEEeecC--CC-CceEEEeccC--------------C------------------------------------Cee
Confidence 88899999985 22 2345788877 4 115
Q ss_pred EEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 221 LMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 221 vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
..++. ..+++|+|||||+ +...|.+|++||+++.
T Consensus 170 ~AaV~--k~N~~g~QFHPEK-Sg~~Gl~lL~NFl~~~ 203 (204)
T COG0118 170 PAAVA--KDNVFGTQFHPEK-SGKAGLKLLKNFLEWI 203 (204)
T ss_pred EEEEE--eCCEEEEecCccc-chHHHHHHHHHHHhhc
Confidence 56664 4589999999999 7789999999999864
No 52
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.92 E-value=2.4e-24 Score=206.20 Aligned_cols=170 Identities=22% Similarity=0.304 Sum_probs=124.2
Q ss_pred cE-EEEEECCCCch---HHHHHHHHHhCCCC---eEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC--chhH
Q 046651 5 VR-TLLIDNYDSYT---YNIYQELSTINGVP---PVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE--DIGI 75 (392)
Q Consensus 5 ~r-~LlIDnyDSyT---~nl~q~L~~v~G~~---pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~--d~gi 75 (392)
|| +||+.+.+.-. -.+.+.+.+ .|.. ..+++.+....... +...||+|||+|||+++++.. +..+
T Consensus 1 m~~ililq~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~dgvIi~Gg~~~~~d~~~~~~pw 74 (242)
T PRK07567 1 MKPFLLLSPRPEDEAADAEYAAFLRY-TGLDPAELRRIRLDREPLPDL-----DLDDYSGVIVGGSPFNVSDPAESKSPW 74 (242)
T ss_pred CCcEEEEecCCCcccccchHHHHHHh-cCCCccceEEEecccCCCCCC-----CHhhccEEEEcCCCCcCCCCCCccchH
Confidence 44 88887765432 456666766 6765 55555555421111 115699999999999998752 2221
Q ss_pred -------HHHHHHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEec----CCcccccCCCCCCcceEEE
Q 046651 76 -------CLRVLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN----GDRLFHDIPSGQNSGFKVV 142 (392)
Q Consensus 76 -------~~~ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~----g~~LF~~ips~~~s~f~Vv 142 (392)
+.++++. ..++||||||+|||+|+.++||+|.+......|.. .+..+ .++||.++|.. |++.
T Consensus 75 ~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~g~e~G~~-~v~l~~~g~~~~l~~~~~~~----~~~~ 149 (242)
T PRK07567 75 QRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTYGEPVGAV-TVSLTDAGRADPLLAGLPDT----FTAF 149 (242)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCCCCcCccE-EEEECCccCCChhhcCCCCc----eEEE
Confidence 1233332 35899999999999999999999998444556654 33322 35799999887 9999
Q ss_pred eeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEE
Q 046651 143 RYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLM 222 (392)
Q Consensus 143 ryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vm 222 (392)
++|++.|.. ||++++++|.+++ + .+|
T Consensus 150 ~~H~d~V~~--lp~~~~vlA~s~~--------------~--------------------------------------~vq 175 (242)
T PRK07567 150 VGHKEAVSA--LPPGAVLLATSPT--------------C--------------------------------------PVQ 175 (242)
T ss_pred eehhhhhhh--CCCCCEEEEeCCC--------------C--------------------------------------CEE
Confidence 999999987 9999999999987 6 799
Q ss_pred EEEecCCCEEEEeccCCC
Q 046651 223 GIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 223 gi~h~~~P~~GVQFHPEs 240 (392)
|+++. .++||||||||.
T Consensus 176 a~~~~-~~~~gvQfHPE~ 192 (242)
T PRK07567 176 MFRVG-ENVYATQFHPEL 192 (242)
T ss_pred EEEeC-CCEEEEEeCCcC
Confidence 99975 469999999998
No 53
>PRK05665 amidotransferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=201.31 Aligned_cols=185 Identities=19% Similarity=0.202 Sum_probs=129.6
Q ss_pred ccEEEEEECC----------CCchHHHHHHHHHhCCCC--eEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC
Q 046651 4 FVRTLLIDNY----------DSYTYNIYQELSTINGVP--PVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 4 ~~r~LlIDny----------DSyT~nl~q~L~~v~G~~--pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~ 71 (392)
.||++|+... +.|...+.++|.. .+.+ +.++.... .++.. +...||+|||+|||.+++...
T Consensus 2 ~mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~-~~~~~~~~~~~~~~---~~~p~---~~~~~dgiiitGs~~~v~~~~ 74 (240)
T PRK05665 2 SLRICILETDVLRPELVAQYQGYGRMFEQLFAR-QPIAAEFVVYNVVQ---GDYPA---DDEKFDAYLVTGSKADSFGTD 74 (240)
T ss_pred ceEEEEEECCCCCHHHHHHhCCHHHHHHHHHHh-CCCCceEEEEeccC---CCCCC---CcccCCEEEECCCCCCccccc
Confidence 3788888554 3344445566655 4543 33332111 11111 125699999999999987643
Q ss_pred c-hhHHHHHHHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCC-ceeceeEEEecCCcccccCCCCCCcceEEEeeecc
Q 046651 72 D-IGICLRVLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEP-VHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 72 d-~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep-~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
. +.-+.++|++ ..++||||||+|||+|+.++||+|.+.+.+ ..|....-.....++|...|.. |.+..+|.+
T Consensus 75 pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G~e~G~~~~~~~~~~~~~~~~~~~----~~~~~~H~D 150 (240)
T PRK05665 75 PWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGIHRYQLAAHAPWMSPAVTE----LTLLISHQD 150 (240)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCCcccceEEEEecCCCccccCCCCc----eEEEEEcCC
Confidence 3 2334566665 258999999999999999999999998764 3454432223455689888887 999999999
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.|.. ||++++++|.++. + .+++++.
T Consensus 151 ~V~~--LP~ga~~La~s~~--------------~--------------------------------------~~q~~~~- 175 (240)
T PRK05665 151 QVTA--LPEGATVIASSDF--------------C--------------------------------------PFAAYHI- 175 (240)
T ss_pred eeee--CCCCcEEEEeCCC--------------C--------------------------------------cEEEEEe-
Confidence 9988 9999999999887 6 7888874
Q ss_pred CCCEEEEeccCCCCCCchhHHHHHHHHH
Q 046651 228 TRPHYGVQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 228 ~~P~~GVQFHPEsiat~~G~~I~~NF~~ 255 (392)
+.++||+|||||. ..+.-+.+++.+.+
T Consensus 176 ~~~~~g~QfHPE~-~~~~~~~~l~~~~~ 202 (240)
T PRK05665 176 GDQVLCFQGHPEF-VHDYSRALLDLRQE 202 (240)
T ss_pred CCCEEEEecCCcC-cHHHHHHHHHHhhh
Confidence 5679999999998 33345666665543
No 54
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.91 E-value=2.5e-23 Score=198.38 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=131.9
Q ss_pred cEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc---hhHHHHHH
Q 046651 5 VRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED---IGICLRVL 80 (392)
Q Consensus 5 ~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d---~gi~~~ll 80 (392)
||+|+|.|.+.- -..|.+.|++ .|.++.+++.+..... . .+...||+|||+|||.++++... +.-..++|
T Consensus 3 ~~ilviqh~~~e~~g~i~~~L~~-~g~~~~v~~~~~~~~~--~---~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i 76 (234)
T PRK07053 3 KTAVAIRHVAFEDLGSFEQVLGA-RGYRVRYVDVGVDDLE--T---LDALEPDLLVVLGGPIGVYDDELYPFLAPEIALL 76 (234)
T ss_pred ceEEEEECCCCCCChHHHHHHHH-CCCeEEEEecCCCccC--C---CCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHH
Confidence 679999997654 4668888887 7999999987543110 0 11257999999999999876432 22334555
Q ss_pred HH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEE-ec--CCcccccCCCCCCcceEEEeeecceeecCCCC
Q 046651 81 LE--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIV-HN--GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLP 155 (392)
Q Consensus 81 ~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~-h~--g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP 155 (392)
++ ..++||||||+|||+|+.++||+|.+.+..+.|...... .. .+++ .++|.. +.+.++|++.++ ||
T Consensus 77 ~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~~i~~t~~g~~~pl-~~~~~~----~~~~~~H~d~~~---lP 148 (234)
T PRK07053 77 RQRLAAGLPTLGICLGAQLIARALGARVYPGGQKEIGWAPLTLTDAGRASPL-RHLGAG----TPVLHWHGDTFD---LP 148 (234)
T ss_pred HHHHHCCCCEEEECccHHHHHHHcCCcEecCCCCeEeEEEEEEeccccCChh-hcCCCc----ceEEEEeCCEEe---cC
Confidence 54 249999999999999999999999997777788754321 11 2344 467755 899999999984 99
Q ss_pred CCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEe
Q 046651 156 KELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQ 235 (392)
Q Consensus 156 ~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQ 235 (392)
++.+.+|.++. + .+++++. ++++||+|
T Consensus 149 ~ga~~La~s~~--------------~--------------------------------------~~qaf~~-g~~~~g~Q 175 (234)
T PRK07053 149 EGATLLASTPA--------------C--------------------------------------RHQAFAW-GNHVLALQ 175 (234)
T ss_pred CCCEEEEcCCC--------------C--------------------------------------CeeEEEe-CCCEEEEe
Confidence 99999999987 6 6788985 56899999
Q ss_pred ccCCCCCCchhHHHHHHHH
Q 046651 236 FHPESIATCYGSKILRNFR 254 (392)
Q Consensus 236 FHPEsiat~~G~~I~~NF~ 254 (392)
||||... .+++.+.
T Consensus 176 fHpE~~~-----~~~~~w~ 189 (234)
T PRK07053 176 FHPEARE-----DRFEAWL 189 (234)
T ss_pred eCccCCH-----HHHHHHH
Confidence 9999722 4555554
No 55
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.91 E-value=2.5e-23 Score=192.14 Aligned_cols=172 Identities=17% Similarity=0.269 Sum_probs=124.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC--CchhHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP--EDIGICLRVLL 81 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~--~d~gi~~~ll~ 81 (392)
.|||+||++...|+..+ +.|.. .|++++.++.. +++ ..||+|||+||+++.... .+.. ..++++
T Consensus 1 ~m~~~i~~~~g~~~~~~-~~l~~-~g~~~~~~~~~----~~l-------~~~dgiii~GG~~~~~~~~~~~~~-~~~~i~ 66 (189)
T PRK13525 1 MMKIGVLALQGAVREHL-AALEA-LGAEAVEVRRP----EDL-------DEIDGLILPGGESTTMGKLLRDFG-LLEPLR 66 (189)
T ss_pred CCEEEEEEcccCHHHHH-HHHHH-CCCEEEEeCCh----hHh-------ccCCEEEECCCChHHHHHHHHhcc-HHHHHH
Confidence 48999999998888664 66776 79998888642 343 569999998887654321 1111 123444
Q ss_pred H--cCCCCEEEEcHHHHHHHHHhCC-----------eeeecCCC-ceeceeEEEecCCcccccCCCCCCcceEEEeeecc
Q 046651 82 E--CWDVPILGVCLGHQALGFVHGA-----------DIVHAPEP-VHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 82 ~--~~~iPILGVCLGhQ~La~a~Gg-----------~V~~apep-~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
+ ..++||||||+|+|+|+.++|+ +|...+.+ ..|. ...+.+|.++++. +.+..+|++
T Consensus 67 ~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~-----~~~~~~~~~~~~~----~~~~~~H~d 137 (189)
T PRK13525 67 EFIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDS-----FEAELDIKGLGEP----FPAVFIRAP 137 (189)
T ss_pred HHHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceee-----EEecccccCCCCC----eEEEEEeCc
Confidence 3 2489999999999999999988 44433221 1221 1234678887765 999999999
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.|.. ||++++++|.++. + . .+++
T Consensus 138 ~v~~--lp~~~~vlA~~~~--------------~--------------------------------------~-~~~~-- 160 (189)
T PRK13525 138 YIEE--VGPGVEVLATVGG--------------R--------------------------------------I-VAVR-- 160 (189)
T ss_pred eeec--cCCCcEEEEEcCC--------------E--------------------------------------E-EEEE--
Confidence 9988 9999999999754 3 3 3454
Q ss_pred CCCEEEEeccCCCCCCchhHHHHHHHHHHHH
Q 046651 228 TRPHYGVQFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 228 ~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
..++||+|||||... ..+||+||.+++.
T Consensus 161 ~~~~~g~QfHPE~~~---~~~~~~~f~~~~~ 188 (189)
T PRK13525 161 QGNILATSFHPELTD---DTRVHRYFLEMVK 188 (189)
T ss_pred eCCEEEEEeCCccCC---CchHHHHHHHHhh
Confidence 358999999999844 3799999999986
No 56
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.91 E-value=4.1e-23 Score=196.87 Aligned_cols=179 Identities=22% Similarity=0.255 Sum_probs=131.6
Q ss_pred cEEEEEECCCCch-HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-Cch-----hHHH
Q 046651 5 VRTLLIDNYDSYT-YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-EDI-----GICL 77 (392)
Q Consensus 5 ~r~LlIDnyDSyT-~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~d~-----gi~~ 77 (392)
||+++|-+-.--. ..+...+.+ .|.++.++..... +.+.. +...||+|||+|||.++... .+. ....
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~-~g~~~~~~~~~~g--~~~p~---~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~ 74 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAEN-RGYDISYSRVYAG--EALPE---NADGFDLLIVMGGPQSPRTTREECPYFDSKAEQ 74 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHH-CCCeEEEEEccCC--CCCCC---CccccCEEEECCCCCChhhccccccccchHHHH
Confidence 8999998754433 345566665 7988887654331 11110 12579999999999987642 211 1234
Q ss_pred HHHHHc--CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEec----CCcccccCCCCCCcceEEEeeecceeec
Q 046651 78 RVLLEC--WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN----GDRLFHDIPSGQNSGFKVVRYHSLIIDA 151 (392)
Q Consensus 78 ~ll~~~--~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~----g~~LF~~ips~~~s~f~VvryHSl~V~~ 151 (392)
++|+++ .++||||||+|||+|+.++||+|.+.+.+++|.. .|..+ ..+||.++|.. |.|.++|++.++
T Consensus 75 ~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~-~v~lt~~g~~d~l~~~~~~~----~~v~~~H~d~~~- 148 (235)
T PRK08250 75 RLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPEKEIGYF-PITLTEAGLKDPLLSHFGST----LTVGHWHNDMPG- 148 (235)
T ss_pred HHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCCCceeEE-EEEEccccccCchhhcCCCC----cEEEEEecceec-
Confidence 566652 5999999999999999999999999988889986 44432 35699999987 999999999753
Q ss_pred CCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCE
Q 046651 152 DSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPH 231 (392)
Q Consensus 152 ~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~ 231 (392)
||++++++|.++. + .+++++. +.++
T Consensus 149 --lP~~a~~LA~s~~--------------~--------------------------------------~~qa~~~-~~~~ 173 (235)
T PRK08250 149 --LTDQAKVLATSEG--------------C--------------------------------------PRQIVQY-SNLV 173 (235)
T ss_pred --CCCCCEEEECCCC--------------C--------------------------------------CceEEEe-CCCE
Confidence 9999999999987 6 7888885 4569
Q ss_pred EEEeccCCCCCCchhHHHHHHHHH
Q 046651 232 YGVQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 232 ~GVQFHPEsiat~~G~~I~~NF~~ 255 (392)
||+|||||. | ..+++.+++
T Consensus 174 ~g~QfHPE~--~---~~~~~~~~~ 192 (235)
T PRK08250 174 YGFQCHMEF--T---VEAVELLIA 192 (235)
T ss_pred EEEeecCcC--C---HHHHHHHHH
Confidence 999999997 2 245555544
No 57
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.91 E-value=3.1e-23 Score=192.38 Aligned_cols=176 Identities=19% Similarity=0.255 Sum_probs=127.4
Q ss_pred EEEEECC-CCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC--CchhHHHHHHHH-
Q 046651 7 TLLIDNY-DSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP--EDIGICLRVLLE- 82 (392)
Q Consensus 7 ~LlIDny-DSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~--~d~gi~~~ll~~- 82 (392)
+|++.+. +.|...+.+.++. .|.++.++..+.. +++ .+||+|||+|||+++... .+.+ ..+.|++
T Consensus 5 vl~~~~~~~e~~~~~~~~l~~-~g~~~~~~~~~~~--~~l-------~~~d~iii~GG~~~~~~~~~~~~~-~~~~i~~~ 73 (200)
T PRK13527 5 VLALQGDVEEHIDALKRALDE-LGIDGEVVEVRRP--GDL-------PDCDALIIPGGESTTIGRLMKREG-ILDEIKEK 73 (200)
T ss_pred EEEECCccHHHHHHHHHHHHh-cCCCeEEEEeCCh--HHh-------ccCCEEEECCCcHHHHHHHHhhcc-HHHHHHHH
Confidence 5555542 2234467788877 7888887776542 343 469999999998876421 1222 2344444
Q ss_pred -cCCCCEEEEcHHHHHHHHHhCC-eeeecCCCceeceeE-EEec----------CCcccccCCCCCCcceEEEeeeccee
Q 046651 83 -CWDVPILGVCLGHQALGFVHGA-DIVHAPEPVHGRLSE-IVHN----------GDRLFHDIPSGQNSGFKVVRYHSLII 149 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~Gg-~V~~apep~hG~~s~-i~h~----------g~~LF~~ips~~~s~f~VvryHSl~V 149 (392)
..++||||||+|||+|+.++|+ .|...+.+.+|.... +..+ ...+|.++|+. |.+.++|++.|
T Consensus 74 ~~~~~pilGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~H~~~v 149 (200)
T PRK13527 74 IEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGRQRDSFEAEIDLSGLDGP----FHAVFIRAPAI 149 (200)
T ss_pred HHCCCeEEEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccCccccEEEeEeccccCCc----ceEEEEccccc
Confidence 2489999999999999999998 555556667887654 3221 23468888777 99999999999
Q ss_pred ecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCC
Q 046651 150 DADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTR 229 (392)
Q Consensus 150 ~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~ 229 (392)
.. +|++++++|++++ + +++++ ..
T Consensus 150 ~~--lp~~~~~la~~~~--------------~---------------------------------------~~a~~--~~ 172 (200)
T PRK13527 150 TK--VGGDVEVLAKLDD--------------R---------------------------------------IVAVE--QG 172 (200)
T ss_pred cc--cCCCeEEEEEECC--------------E---------------------------------------EEEEE--EC
Confidence 87 9999999999877 4 34664 36
Q ss_pred CEEEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 230 PHYGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 230 P~~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
++||+|||||.. .. .+||+||++.+
T Consensus 173 ~~~g~QfHPE~~--~~-~~l~~~f~~~~ 197 (200)
T PRK13527 173 NVLATAFHPELT--DD-TRIHEYFLKKV 197 (200)
T ss_pred CEEEEEeCCCCC--CC-CHHHHHHHHHH
Confidence 899999999963 33 89999999876
No 58
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.90 E-value=7.2e-24 Score=202.44 Aligned_cols=186 Identities=18% Similarity=0.189 Sum_probs=129.4
Q ss_pred EEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHH--HhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCC
Q 046651 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDI--CRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWD 85 (392)
Q Consensus 8 LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel--~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~ 85 (392)
-++|+|+|.+++|.+++.+ ++..++++..+....++. ...| ..+|+||++|||+.+.....+...... .+ .+
T Consensus 11 ~~~day~s~~~~L~~a~~~-~~~~v~~~~i~~~~~~~~~~~~~l---~~~dgivl~GG~~~~~~~~~~~~i~~~-~~-~~ 84 (235)
T cd01746 11 ELPDAYLSVLEALKHAGIA-LGVKLEIKWIDSEDLEEENAEEAL---KGADGILVPGGFGIRGVEGKILAIKYA-RE-NN 84 (235)
T ss_pred CCHHHHHHHHHHHHHHHHH-cCCeeEEEEeChhhcCccchhhhh---ccCCEEEECCCCCCcchhhHHHHHHHH-HH-CC
Confidence 3458888889999999988 677777776665433322 1233 679999999999988654333222222 22 49
Q ss_pred CCEEEEcHHHHHHHHHhCCeeeecCCCceece-----------------------------eEEEe-cCCcccccCCCCC
Q 046651 86 VPILGVCLGHQALGFVHGADIVHAPEPVHGRL-----------------------------SEIVH-NGDRLFHDIPSGQ 135 (392)
Q Consensus 86 iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~-----------------------------s~i~h-~g~~LF~~ips~~ 135 (392)
+|+||||+|||+|+.++|+.+.+.+...+... ..|.. .++.|..-+...
T Consensus 85 ~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~- 163 (235)
T cd01746 85 IPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGKD- 163 (235)
T ss_pred ceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECCCChHHHHhCCC-
Confidence 99999999999999999999987654421110 11221 244443333332
Q ss_pred CcceEEEeeecceeecCC---C-CCCcEEEEEec-CCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccc
Q 046651 136 NSGFKVVRYHSLIIDADS---L-PKELIPIAWSN-SADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHS 210 (392)
Q Consensus 136 ~s~f~VvryHSl~V~~~s---L-P~~l~~iAwt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 210 (392)
...+..+|++.|+++. + .+++.++||+. + +
T Consensus 164 --~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~dd--------------g----------------------------- 198 (235)
T cd01746 164 --EVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDG--------------G----------------------------- 198 (235)
T ss_pred --EEEEecCcccccCHHHHHHHhhCCeEEEEEeCCC--------------C-----------------------------
Confidence 1466788999986532 2 67899999997 4 6
Q ss_pred cccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHH
Q 046651 211 IYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFR 254 (392)
Q Consensus 211 ~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~ 254 (392)
+|+|+++.+.|+| |||||||..+... .+.||++|.
T Consensus 199 ---------~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~~lF~~fv 235 (235)
T cd01746 199 ---------LVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLFVGFV 235 (235)
T ss_pred ---------eEEEEEcCCCCcEEEEECCCCCcCCCCCccHHHHHhC
Confidence 9999999999988 9999999866433 478999984
No 59
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.90 E-value=6.4e-23 Score=199.82 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=123.2
Q ss_pred HHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH---c----CCCCEEEEc
Q 046651 20 IYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE---C----WDVPILGVC 92 (392)
Q Consensus 20 l~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~---~----~~iPILGVC 92 (392)
.++.+.. .|..+++|..+.. .+++..+| ..+||||++|||.+............+++. . ..+||||||
T Consensus 25 Yv~~l~~-aG~~vvpi~~~~~-~~~l~~~l---~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiC 99 (273)
T cd01747 25 YVKFLES-AGARVVPIWINES-EEYYDKLF---KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTC 99 (273)
T ss_pred HHHHHHH-CCCeEEEEEeCCc-HHHHHHHH---hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEc
Confidence 5567766 7999888887742 45665555 679999998887555422222222222222 1 149999999
Q ss_pred HHHHHHHHHhCCeeee-cCCCceeceeEEEec----CCcccccCCCCC----CcceEEEeeecceeecCCCC------CC
Q 046651 93 LGHQALGFVHGADIVH-APEPVHGRLSEIVHN----GDRLFHDIPSGQ----NSGFKVVRYHSLIIDADSLP------KE 157 (392)
Q Consensus 93 LGhQ~La~a~Gg~V~~-apep~hG~~s~i~h~----g~~LF~~ips~~----~s~f~VvryHSl~V~~~sLP------~~ 157 (392)
||||+|+.++|+++.. .+.+.+|....+... .++||+++|... .....+.++|+++|+++++| +.
T Consensus 100 lG~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~ 179 (273)
T cd01747 100 LGFELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDF 179 (273)
T ss_pred HHHHHHHHHhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccc
Confidence 9999999999998654 556678876676654 478999998731 01145789999999876665 35
Q ss_pred cEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEecc
Q 046651 158 LIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFH 237 (392)
Q Consensus 158 l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFH 237 (392)
+.++|++.+.. + ...+|+++|.+.|+||+|||
T Consensus 180 ~~vla~~~d~~------------g------------------------------------~~fis~ie~~~~pi~gvQFH 211 (273)
T cd01747 180 FNVLTTNDDWN------------G------------------------------------VEFISTVEAYKYPIYGVQWH 211 (273)
T ss_pred eEEEEEEecCC------------C------------------------------------ceEEEEEEecCCceEEEecC
Confidence 68888876511 1 22799999999999999999
Q ss_pred CCCCCCchh
Q 046651 238 PESIATCYG 246 (392)
Q Consensus 238 PEsiat~~G 246 (392)
||+..++++
T Consensus 212 PEks~few~ 220 (273)
T cd01747 212 PEKNAFEWK 220 (273)
T ss_pred CCccccccc
Confidence 999877665
No 60
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.88 E-value=1.2e-22 Score=205.38 Aligned_cols=189 Identities=24% Similarity=0.365 Sum_probs=155.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
=+|||+|.+.+|+.-|-+.+++ +-+.-.+++-+.+ ...+.. ..|-+|||||||-|.+......+ ...+.++
T Consensus 17 d~i~iLD~GaQY~~~I~RrvRe-l~v~se~~p~~t~-~~~i~~-----~~~rgiIiSGGP~SVya~dAP~~-dp~if~~- 87 (552)
T KOG1622|consen 17 DTILILDFGAQYGKVIDRRVRE-LNVQSEILPLTTP-AKTITE-----YGPRGIIISGGPNSVYAEDAPSF-DPAIFEL- 87 (552)
T ss_pred ceEEEEeccchhhHHHHHHHHH-HhhhhhhccCCCh-hhhhhc-----CCceEEEEeCCCCccccCcCCCC-ChhHhcc-
Confidence 3799999999999888888888 4666777777665 566654 57999999999999887543222 2233445
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||.|||+|+..+|+.|.+-..-+.|.......+.+.||.++-+..- ..|..-|++.+.. +|+++.++||+
T Consensus 88 ~vpvLGICYGmQ~i~~~~Gg~V~~~~~RE~G~~eI~v~~~~~lF~~~~~~~~--~~VlltHgdsl~~--v~~g~kv~a~s 163 (552)
T KOG1622|consen 88 GVPVLGICYGMQLINKLNGGTVVKGMVREDGEDEIEVDDSVDLFSGLHKTEF--MTVLLTHGDSLSK--VPEGFKVVAFS 163 (552)
T ss_pred CCcceeehhHHHHHHHHhCCccccccccCCCCceEEcCchhhhhhhhcccce--eeeeeccccchhh--ccccceeEEee
Confidence 8999999999999999999999998888888765544567789999877621 2488999999998 99999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
.. . .+.+|.+..+++||+|||||-.+|.
T Consensus 164 ~n--------------~--------------------------------------~va~i~~e~kkiyglqfhpEV~~t~ 191 (552)
T KOG1622|consen 164 GN--------------K--------------------------------------PVAGILNELKKIYGLQFHPEVTLTP 191 (552)
T ss_pred cC--------------c--------------------------------------ceeeehhhhhhhhcCCCCCcccccC
Confidence 76 3 6899999999999999999999999
Q ss_pred hhHHHHHHHH-HHHH
Q 046651 245 YGSKILRNFR-EITE 258 (392)
Q Consensus 245 ~G~~I~~NF~-~l~~ 258 (392)
.|.+|++||+ ++|.
T Consensus 192 ~g~~ll~nFl~~vc~ 206 (552)
T KOG1622|consen 192 NGKELLKNFLFDVCG 206 (552)
T ss_pred chhHHHHHHHHHHcC
Confidence 9999999999 7763
No 61
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.88 E-value=1.4e-21 Score=181.78 Aligned_cols=167 Identities=23% Similarity=0.325 Sum_probs=114.1
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----CchhHHHHHHHH
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIGICLRVLLE 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~gi~~~ll~~ 82 (392)
+.|||...++..++.++|.+ .|++++++++. +++ ..+|+||| ||+|++... .+.++ .+.|++
T Consensus 2 i~iidyg~gN~~s~~~al~~-~g~~~~~v~~~----~~l-------~~~D~lIl-PG~g~~~~~~~~L~~~gl-~~~i~~ 67 (192)
T PRK13142 2 IVIVDYGLGNISNVKRAIEH-LGYEVVVSNTS----KII-------DQAETIIL-PGVGHFKDAMSEIKRLNL-NAILAK 67 (192)
T ss_pred EEEEEcCCccHHHHHHHHHH-cCCCEEEEeCH----HHh-------ccCCEEEE-CCCCCHHHHHHHHHHCCc-HHHHHH
Confidence 88999999999999999998 79999988644 454 45899977 999987531 11232 344444
Q ss_pred cCCCCEEEEcHHHHHHHHHh--C---------CeeeecCC----CceeceeEEEecCCcccccCCCCCCcceEEEeeecc
Q 046651 83 CWDVPILGVCLGHQALGFVH--G---------ADIVHAPE----PVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~--G---------g~V~~ape----p~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
..++||||||+|||+|+... | ++|.+.+. |..|+... . ...+||+ ..+++.||+
T Consensus 68 ~~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~~~~vph~GWn~~-~-~~~~l~~---------~~~yFVhSy 136 (192)
T PRK13142 68 NTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNL-V-SKHPMLN---------QDVYFVHSY 136 (192)
T ss_pred hCCCeEEEECHHHHHHhhhcccCCcCccCceeEEEEECCCCCCCCccccccc-C-CCCcccc---------cEEEEECCC
Confidence 45899999999999999975 2 23333321 22233221 0 0123332 247899999
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.+. .++ .++++++. + ...+.++ .
T Consensus 137 ~v~---~~~--~v~~~~~y--------------g------------------------------------~~~~~~v--~ 159 (192)
T PRK13142 137 QAP---MSE--NVIAYAQY--------------G------------------------------------ADIPAIV--Q 159 (192)
T ss_pred eEC---CCC--CEEEEEEC--------------C------------------------------------CeEEEEE--E
Confidence 993 233 45677766 3 0145555 4
Q ss_pred CCCEEEEeccCCCCCCchhHHHHHHHHHH
Q 046651 228 TRPHYGVQFHPESIATCYGSKILRNFREI 256 (392)
Q Consensus 228 ~~P~~GVQFHPEsiat~~G~~I~~NF~~l 256 (392)
..++||+|||||+ +...|.+|++||++.
T Consensus 160 ~~n~~g~QFHPEk-S~~~G~~ll~nf~~~ 187 (192)
T PRK13142 160 FNNYIGIQFHPEK-SGTYGLQILRQAIQG 187 (192)
T ss_pred cCCEEEEecCccc-CcHhHHHHHHHHHhc
Confidence 6789999999999 678999999999863
No 62
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.86 E-value=4.7e-21 Score=181.67 Aligned_cols=201 Identities=15% Similarity=0.182 Sum_probs=130.9
Q ss_pred cEEEEEECCCCch-HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-----CCchhHHHH
Q 046651 5 VRTLLIDNYDSYT-YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-----PEDIGICLR 78 (392)
Q Consensus 5 ~r~LlIDnyDSyT-~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-----~~d~gi~~~ 78 (392)
|||+||+...++. ..+++.|++ .|++++++..++.. + ..+|+|||+||+..-.. ........+
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~-~G~~~~~i~~~~~~---l-------~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~ 69 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRL-LGVDAEIVWYEDGS---L-------PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQ 69 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHH-CCCeEEEEecCCCC---C-------CCCCEEEECCCCcccccccccchhcchHHHH
Confidence 7999999998874 678999998 79999888765432 2 46999999888642111 111122344
Q ss_pred HHHH--cCCCCEEEEcHHHHHHHHH--hCCeeeecCCCceec--eeE-EEecCCcccccCCCCCCcceEEEeee---cce
Q 046651 79 VLLE--CWDVPILGVCLGHQALGFV--HGADIVHAPEPVHGR--LSE-IVHNGDRLFHDIPSGQNSGFKVVRYH---SLI 148 (392)
Q Consensus 79 ll~~--~~~iPILGVCLGhQ~La~a--~Gg~V~~apep~hG~--~s~-i~h~g~~LF~~ips~~~s~f~VvryH---Sl~ 148 (392)
++++ ..++||||||.|+|+|+.+ +++.+.+.....++. ... +..+.+.+|++++.+.. +.+--.| .+.
T Consensus 70 ~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~--~~~pi~H~eG~y~ 147 (227)
T TIGR01737 70 EVREFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVENADTIFTKNYKKGEV--IRIPIAHGEGRYY 147 (227)
T ss_pred HHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeecCCCceEEEeEEEEECCCCChhhccCCCCCE--EEEEeEcCCcCeE
Confidence 4544 3589999999999999996 888888876665543 222 22345788899986521 2221123 444
Q ss_pred eecCC---CCCC-cEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEE
Q 046651 149 IDADS---LPKE-LIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGI 224 (392)
Q Consensus 149 V~~~s---LP~~-l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi 224 (392)
++++. |.+. .+.+-+.+. + + +...-.||+++ ...||||
T Consensus 148 ~~~~~l~~l~~~~~i~~~y~d~-~------------g--------~~~~~~npngs-----------------~~~i~~i 189 (227)
T TIGR01737 148 ADDETLARLESNDQVVFRYCDE-D------------G--------DVAEEANPNGS-----------------VGNIAGI 189 (227)
T ss_pred cCHHHHHHHHHCCcEEEEEECC-C------------C--------CCCCCCCCCCC-----------------HHHHccc
Confidence 44321 3333 333333332 1 1 00111222222 2389999
Q ss_pred EecCCCEEEEeccCCCC-----CCchhHHHHHHHHHH
Q 046651 225 MHSTRPHYGVQFHPESI-----ATCYGSKILRNFREI 256 (392)
Q Consensus 225 ~h~~~P~~GVQFHPEsi-----at~~G~~I~~NF~~l 256 (392)
.|.+.+++|+|||||++ .|++|.+||+||++.
T Consensus 190 ~~~~~~~~g~~~HpE~~~~~~~~~~~g~~~~~~~~~~ 226 (227)
T TIGR01737 190 VNERGNVLGMMPHPERASEKLLGGDDGLKLFESLVEW 226 (227)
T ss_pred CCCCCCEEEEecCchhhcccccCCcccHHHHHHHHhh
Confidence 99999999999999998 589999999999753
No 63
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.86 E-value=1.7e-20 Score=197.76 Aligned_cols=181 Identities=24% Similarity=0.265 Sum_probs=133.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-C---chhHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-E---DIGICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~---d~gi~~~l 79 (392)
..+|+|||+...+..++.+.|.+ .|+++++++. .+++ ..+|+||| ||+|++... . +.++ .+.
T Consensus 6 ~~~i~iiDyG~GN~~sl~~al~~-~G~~v~~v~~----~~~l-------~~~D~lIl-pG~gs~~~~m~~L~~~gl-~~~ 71 (538)
T PLN02617 6 DSEVTLLDYGAGNVRSVRNAIRH-LGFTIKDVQT----PEDI-------LNADRLIF-PGVGAFGSAMDVLNNRGM-AEA 71 (538)
T ss_pred CCeEEEEECCCCCHHHHHHHHHH-CCCeEEEECC----hhhh-------ccCCEEEE-CCCCCHHHHHHHHHHcCH-HHH
Confidence 36899999999999999999998 7999988753 2344 45999999 888886431 1 1121 222
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHh---------C---Ceeeec------CCCceeceeEEEecCCcccccCCCCCCcce
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVH---------G---ADIVHA------PEPVHGRLSEIVHNGDRLFHDIPSGQNSGF 139 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~---------G---g~V~~a------pep~hG~~s~i~h~g~~LF~~ips~~~s~f 139 (392)
|++ ..++|+||||+|||+|+... | ++|.+. +-|++|+.......+++||.+++. +
T Consensus 72 i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~~~spL~~~l~~-----~ 146 (538)
T PLN02617 72 LREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQITKDSELLDGVGG-----R 146 (538)
T ss_pred HHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEecCCChhHhcCCC-----c
Confidence 322 24899999999999999873 2 666654 235788876655678899999853 6
Q ss_pred EEEeeecceeecCCCCCCc-EEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCc
Q 046651 140 KVVRYHSLIIDADSLPKEL-IPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRR 218 (392)
Q Consensus 140 ~VvryHSl~V~~~sLP~~l-~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 218 (392)
.++++||+.+.. +|... ..++++.. + .
T Consensus 147 ~vy~vHSy~v~~--~p~~~~~v~a~~~~--------------g------------------------------------~ 174 (538)
T PLN02617 147 HVYFVHSYRATP--SDENKDWVLATCNY--------------G------------------------------------G 174 (538)
T ss_pred EEEEEeEEEEEe--cCCCCcEEEEEEcc--------------C------------------------------------C
Confidence 789999999866 55443 34555554 2 1
Q ss_pred ceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHHH
Q 046651 219 EVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 219 ~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
..++|+++ .++||+|||||... ..|.+||+||++...
T Consensus 175 ~~IaAI~~--gnI~GVQFHPE~s~-~~G~~L~~nFl~~~~ 211 (538)
T PLN02617 175 EFIASVRK--GNVHAVQFHPEKSG-ATGLSILRRFLEPKS 211 (538)
T ss_pred CcEEEEEe--CCEEEEEcCCccCc-hhHHHHHHHHHHhhh
Confidence 17899986 48999999999954 789999999997765
No 64
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.84 E-value=3.3e-20 Score=174.89 Aligned_cols=159 Identities=22% Similarity=0.294 Sum_probs=105.8
Q ss_pred HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCC---------CCCC------chhHHHHHHHH-
Q 046651 19 NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP---------ACPE------DIGICLRVLLE- 82 (392)
Q Consensus 19 nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp---------~~~~------d~gi~~~ll~~- 82 (392)
+.++.+.. +|..|++++.+. +.+++..+| ..+|||||+||.-+. .... .......+++.
T Consensus 28 ~Yv~~i~~-aG~~pv~ip~~~-~~~~~~~~l---~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a 102 (217)
T PF07722_consen 28 SYVKAIEA-AGGRPVPIPYDA-DDEELDELL---DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNA 102 (217)
T ss_dssp HHHHHHHH-TT-EEEEE-SS---HHHHHHHH---HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCEEEEEccCC-CHHHHHHHH---hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHH
Confidence 45677777 799999999986 367777777 789999998887322 1100 01123344444
Q ss_pred -cCCCCEEEEcHHHHHHHHHhCCeeeecCCCc-----e------eceeEEEecCCcccccCCC-CCCcceEEEeeeccee
Q 046651 83 -CWDVPILGVCLGHQALGFVHGADIVHAPEPV-----H------GRLSEIVHNGDRLFHDIPS-GQNSGFKVVRYHSLII 149 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~Gg~V~~apep~-----h------G~~s~i~h~g~~LF~~ips-~~~s~f~VvryHSl~V 149 (392)
..++||||||+|||+|+.++||++...-... | .....|......+++.+.. . .+.|..+|.+.|
T Consensus 103 ~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~~s~l~~~~~~~---~~~vns~Hhq~v 179 (217)
T PF07722_consen 103 LGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVPGSLLAKILGSE---EIEVNSFHHQAV 179 (217)
T ss_dssp CCTT--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEETTSTCCCTSHHC---TEEEEEEECEEE
T ss_pred HhcCCCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceeccCchHHHHhCcC---cceeecchhhhh
Confidence 3599999999999999999999987643321 1 1122333334444555554 2 289999999999
Q ss_pred ecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCC
Q 046651 150 DADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTR 229 (392)
Q Consensus 150 ~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~ 229 (392)
+. |.+++.++|++.+ + +++||++...
T Consensus 180 ~~--l~~~l~v~A~s~D--------------g--------------------------------------~iEaie~~~~ 205 (217)
T PF07722_consen 180 KP--LGEGLRVTARSPD--------------G--------------------------------------VIEAIESPEH 205 (217)
T ss_dssp CC--HHCCEEEEEEECT--------------S--------------------------------------SEEEEEECCE
T ss_pred hc--cCCCceEEEEecC--------------C--------------------------------------cEEEEEEcCC
Confidence 98 9999999999998 7 8999998884
Q ss_pred --CEEEEeccCC
Q 046651 230 --PHYGVQFHPE 239 (392)
Q Consensus 230 --P~~GVQFHPE 239 (392)
|++|||||||
T Consensus 206 ~~~~~GvQwHPE 217 (217)
T PF07722_consen 206 KYPILGVQWHPE 217 (217)
T ss_dssp SS-EEEESS-CC
T ss_pred CCCEEEEEeCCC
Confidence 6999999999
No 65
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.84 E-value=6.5e-20 Score=174.36 Aligned_cols=180 Identities=23% Similarity=0.359 Sum_probs=129.2
Q ss_pred HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCC---------------CCCCchhHHHHHHHH
Q 046651 18 YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP---------------ACPEDIGICLRVLLE 82 (392)
Q Consensus 18 ~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp---------------~~~~d~gi~~~ll~~ 82 (392)
++.++.+.. +|.-|..++.-. .-+++..++ ...|+|||||| .+. ..++.-...+.+|++
T Consensus 29 ~~yv~ai~~-aGg~pillP~~~-d~~~~~~~l---~~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ 102 (243)
T COG2071 29 YDYVDAIIK-AGGIPILLPALE-DPEDARQYL---DLIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRA 102 (243)
T ss_pred HHHHHHHHH-cCCceEEecCCC-CHHHHHHHH---hhccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHH
Confidence 456677766 788888888322 245666666 77999999999 321 112222345566665
Q ss_pred --cCCCCEEEEcHHHHHHHHHhCCeeeecC------------CCceeceeEEE-ecCCcccccCCCCCCcceEEEeeecc
Q 046651 83 --CWDVPILGVCLGHQALGFVHGADIVHAP------------EPVHGRLSEIV-HNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 83 --~~~iPILGVCLGhQ~La~a~Gg~V~~ap------------ep~hG~~s~i~-h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
.+++||||||.|+|+|+.++||.+..-- .+.+=....|. ..++.|++-+... + +.|..+|.+
T Consensus 103 ALe~~iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~s~La~i~g~~--~-~~VNS~HhQ 179 (243)
T COG2071 103 ALERGIPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILGES--E-FMVNSFHHQ 179 (243)
T ss_pred HHHcCCCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecCCccHHHhcCcc--c-eeecchHHH
Confidence 3699999999999999999999886421 11111122233 3466666655422 1 789999999
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.|+. |.++|+++|+++| | +|+||++.
T Consensus 180 aIk~--La~~L~V~A~a~D--------------G--------------------------------------~VEAie~~ 205 (243)
T COG2071 180 AIKK--LAPGLVVEARAPD--------------G--------------------------------------TVEAVEVK 205 (243)
T ss_pred HHHH--hCCCcEEEEECCC--------------C--------------------------------------cEEEEEec
Confidence 9999 9999999999998 7 99999999
Q ss_pred C-CCEEEEeccCCCCCCc--hhHHHHHHHHHHHHHh
Q 046651 228 T-RPHYGVQFHPESIATC--YGSKILRNFREITEDY 260 (392)
Q Consensus 228 ~-~P~~GVQFHPEsiat~--~G~~I~~NF~~l~~~~ 260 (392)
+ ..+.|||||||..... .-++||+.|.+.+..+
T Consensus 206 ~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 206 NDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred CCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 6 4567999999986543 3699999999988765
No 66
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.84 E-value=3.5e-20 Score=199.15 Aligned_cols=187 Identities=27% Similarity=0.408 Sum_probs=147.1
Q ss_pred CCccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc-hhHHHHHH
Q 046651 2 LEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED-IGICLRVL 80 (392)
Q Consensus 2 ~~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d-~gi~~~ll 80 (392)
+...|++.||+ ...+|+.+.|.. -|+++.||+++.+ ..+ .+||||+||.|||+|..... +.-..++|
T Consensus 170 Gk~~~I~aiDc--G~K~N~IRcL~~-RGa~vtVvPw~~~-i~~--------~~yDGlflSNGPGdPe~~~~~v~~vr~lL 237 (1435)
T KOG0370|consen 170 GKSLRILAIDC--GLKYNQIRCLVK-RGAEVTVVPWDYP-IAK--------EEYDGLFLSNGPGDPELCPLLVQNVRELL 237 (1435)
T ss_pred CcccEEEEccc--CchHHHHHHHHH-hCceEEEecCCcc-ccc--------cccceEEEeCCCCCchhhHHHHHHHHHHH
Confidence 34579999997 689999999988 5999999998876 333 46999999999999975332 33344555
Q ss_pred HHcCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEE
Q 046651 81 LECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIP 160 (392)
Q Consensus 81 ~~~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~ 160 (392)
.. ++||+|||+|||+|+.+.||+..++..+.+|.+.+..+.. +++ -|-..+.|.|.|+.++||.+..+
T Consensus 238 ~~--~~PvfGIClGHQllA~AaGakT~KmKyGNRGhNiP~~~~~--------tGr--c~ITSQNHGYAVD~~tLp~gWk~ 305 (1435)
T KOG0370|consen 238 ES--NVPVFGICLGHQLLALAAGAKTYKMKYGNRGHNIPCTCRA--------TGR--CFITSQNHGYAVDPATLPAGWKP 305 (1435)
T ss_pred hC--CCCeEEEehhhHHHHHhhCCceEEeeccccCCCccceecc--------Cce--EEEEecCCceeeccccccCCCch
Confidence 44 5999999999999999999999999999999876654432 221 14445789999999999988776
Q ss_pred EEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 161 IAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 161 iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
+-.+... + .-+||+|..+|++.+|||||.
T Consensus 306 lFvN~ND-------------g--------------------------------------SNEGI~Hss~P~fSvQFHPEa 334 (1435)
T KOG0370|consen 306 LFVNAND-------------G--------------------------------------SNEGIMHSSKPFFSVQFHPEA 334 (1435)
T ss_pred heeeccc-------------C--------------------------------------CCceEecCCCCceeeecCCcC
Confidence 6444320 2 567899999999999999999
Q ss_pred CCCch-hHHHHHHHHHHHHHhhhh
Q 046651 241 IATCY-GSKILRNFREITEDYWKR 263 (392)
Q Consensus 241 iat~~-G~~I~~NF~~l~~~~~~~ 263 (392)
..++. -..+|+.|.++.......
T Consensus 335 t~GP~DTeyLFDiFi~lvkk~kst 358 (1435)
T KOG0370|consen 335 TPGPHDTEYLFDVFIELVKKSKST 358 (1435)
T ss_pred CCCCcchHHHHHHHHHHHHHHhcC
Confidence 77665 478999999999877544
No 67
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.83 E-value=6.9e-20 Score=191.53 Aligned_cols=197 Identities=20% Similarity=0.254 Sum_probs=122.0
Q ss_pred ccEEEEEECC----CCchHHHHHHHHH---hCCCCeEEEeCCCCCHHH--HHhhhcccCCcCEEEECCCCCCCCCCCchh
Q 046651 4 FVRTLLIDNY----DSYTYNIYQELST---INGVPPVVVRNDEWTWRD--ICRYLYEENAFDNIVISPGPGSPACPEDIG 74 (392)
Q Consensus 4 ~~r~LlIDny----DSyT~nl~q~L~~---v~G~~pvVV~nd~~~~ee--l~~~l~e~~~fDgIVISpGPGsp~~~~d~g 74 (392)
.++|.||--| |+|. ++..+|.. .++..+.+.+.|....++ ....| ..+|+|||+||+|.+.....+.
T Consensus 288 ~v~IalVGKY~~l~DaY~-Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L---~~~DGIIlpGGfG~~~~~g~i~ 363 (533)
T PRK05380 288 EVTIALVGKYVELPDAYK-SVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELL---KGVDGILVPGGFGERGIEGKIL 363 (533)
T ss_pred ceEEEEEeCccCCcHHHH-HHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHh---hcCCEEEecCCCCccccccHHH
Confidence 4789998666 4443 34444433 267777777666554332 23333 6799999999999876554443
Q ss_pred HHHHHHHHcCCCCEEEEcHHHHHHHHHhCCeee---ecCCCcee------c--------------------eeEEE-ecC
Q 046651 75 ICLRVLLECWDVPILGVCLGHQALGFVHGADIV---HAPEPVHG------R--------------------LSEIV-HNG 124 (392)
Q Consensus 75 i~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~---~apep~hG------~--------------------~s~i~-h~g 124 (392)
.. +..++ .++|+||||+|||+|+.++|+.+. .+...+.+ . ...+. ..+
T Consensus 364 ~i-~~a~e-~~iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~g 441 (533)
T PRK05380 364 AI-RYARE-NNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG 441 (533)
T ss_pred HH-HHHHH-CCCcEEEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCC
Confidence 32 22233 499999999999999999999984 22100100 0 01111 123
Q ss_pred CcccccCCCCCCcceEEEeeecceeecCC---C-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccc
Q 046651 125 DRLFHDIPSGQNSGFKVVRYHSLIIDADS---L-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDIST 200 (392)
Q Consensus 125 ~~LF~~ips~~~s~f~VvryHSl~V~~~s---L-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (392)
+.|.+-+.... ..--.-|.+.|++.. + ..+|.+.||+.+. +
T Consensus 442 S~l~~iyg~~~---i~ErhrHryeVNs~h~qal~~~GL~vsa~s~Dg-------------g------------------- 486 (533)
T PRK05380 442 TLAAEIYGKEE---IYERHRHRYEVNNKYREQLEKAGLVFSGTSPDG-------------R------------------- 486 (533)
T ss_pred ChHHHHhCCCc---eeeecccceecCHHHHHHHhhcCeEEEEEcCCC-------------C-------------------
Confidence 33333222210 111123444444321 1 1379999998651 3
Q ss_pred cccCCCcccccccccCCcceEEEEEecCCCEE-EEeccCCCCCCc-hhHHHHHHHHHHHHHh
Q 046651 201 QIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATC-YGSKILRNFREITEDY 260 (392)
Q Consensus 201 ~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~-~G~~I~~NF~~l~~~~ 260 (392)
.++||++.++|+| |||||||..+.+ ..+.||++|.+.|..+
T Consensus 487 -------------------lVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~~~ 529 (533)
T PRK05380 487 -------------------LVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALEN 529 (533)
T ss_pred -------------------cEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHHHH
Confidence 8999999999976 999999987654 4789999999999765
No 68
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.81 E-value=4.5e-19 Score=185.29 Aligned_cols=191 Identities=19% Similarity=0.272 Sum_probs=122.8
Q ss_pred ccEEEEEECC----CCchHHHHHHHHHhCCC----CeEEEeCCCCCHHHH-HhhhcccCCcCEEEECCCCCCCCCCCchh
Q 046651 4 FVRTLLIDNY----DSYTYNIYQELSTINGV----PPVVVRNDEWTWRDI-CRYLYEENAFDNIVISPGPGSPACPEDIG 74 (392)
Q Consensus 4 ~~r~LlIDny----DSyT~nl~q~L~~v~G~----~pvVV~nd~~~~eel-~~~l~e~~~fDgIVISpGPGsp~~~~d~g 74 (392)
.++|.|+-.| |+| -++.++|.. .|. .+++..-+....++. ...| ..+|+|||+||||++.....+.
T Consensus 289 ~v~IalVGKY~~~~daY-~SI~eAL~~-ag~~~~~~V~~~~i~se~i~~~~~~~L---~~~dGIiLpGG~G~~~~~g~i~ 363 (525)
T TIGR00337 289 EVTIGIVGKYVELKDSY-LSVIEALKH-AGAKLDTKVNIKWIDSEDLEEEGAEFL---KGVDGILVPGGFGERGVEGKIL 363 (525)
T ss_pred CcEEEEEeCCcCCHHHH-HHHHHHHHh-CccccCCEEEEEEecHHHhhhhhhhhh---cCCCEEEeCCCCCChhhcChHH
Confidence 4899999887 566 378888876 454 343333332211111 1123 5699999999999986433333
Q ss_pred HHHHHHHHcCCCCEEEEcHHHHHHHHHhCCeeeecCCCceec-----eeE------------------------EE-ecC
Q 046651 75 ICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGR-----LSE------------------------IV-HNG 124 (392)
Q Consensus 75 i~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~-----~s~------------------------i~-h~g 124 (392)
..+..++. ++|+||||+|||+|+.++|+.|...+...+.. ... +. ..+
T Consensus 364 -ai~~a~e~-~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~g 441 (525)
T TIGR00337 364 -AIKYAREN-NIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPG 441 (525)
T ss_pred -HHHHHHHc-CCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCC
Confidence 23334444 99999999999999999999887765443311 111 11 122
Q ss_pred CcccccCCCCCCcceEEEeeecceeecCCC----CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccc
Q 046651 125 DRLFHDIPSGQNSGFKVVRYHSLIIDADSL----PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDIST 200 (392)
Q Consensus 125 ~~LF~~ips~~~s~f~VvryHSl~V~~~sL----P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (392)
+.|.+-+.... ...-+.|++.|++... .++|+++||+.+. +
T Consensus 442 S~L~~iyG~~~---i~erhrHry~VNs~h~q~l~~~GL~vsa~s~Dg-------------g------------------- 486 (525)
T TIGR00337 442 TLAFKLYGKEE---VYERHRHRYEVNNEYREQLENKGLIVSGTSPDG-------------R------------------- 486 (525)
T ss_pred ChHHHHhCCCc---eeecccceEEECHHHHHhhhhCCeEEEEEECCC-------------C-------------------
Confidence 33332222210 2223457777776332 2689999998761 3
Q ss_pred cccCCCcccccccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHH
Q 046651 201 QIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFRE 255 (392)
Q Consensus 201 ~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~ 255 (392)
+++||++.++|+| |||||||..+.+. .+.||+.|.+
T Consensus 487 -------------------~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~ 524 (525)
T TIGR00337 487 -------------------LVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVK 524 (525)
T ss_pred -------------------EEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHh
Confidence 8999999999977 9999999876543 5799999985
No 69
>PRK06186 hypothetical protein; Validated
Probab=99.78 E-value=2e-18 Score=164.40 Aligned_cols=192 Identities=18% Similarity=0.219 Sum_probs=113.8
Q ss_pred cEEEEEECC----CCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHH
Q 046651 5 VRTLLIDNY----DSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICL 77 (392)
Q Consensus 5 ~r~LlIDny----DSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~ 77 (392)
++|.||--| |+|. ++.+.|.-. ++.++.+..-|..+.++- ..| ..+|||+|.||.|.......+.. .
T Consensus 2 v~IalVGKY~~~~daY~-Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~-~~l---~~~dgilvpgGfg~rg~~Gki~a-i 75 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQ-AIPLALDLAAAVLGLPVDYEWLPTPEITDP-EDL---AGFDGIWCVPGSPYRNDDGALTA-I 75 (229)
T ss_pred cEEEEEECCcCCcHHHH-HHHHHHHHHHHhcCCeeEEEEEchhhcCCh-hhH---hhCCeeEeCCCCCcccHhHHHHH-H
Confidence 688888776 6665 455555432 676666554444333321 123 57999999999886543333322 2
Q ss_pred HHHHHcCCCCEEEEcHHHHHHHHHhCCeeeecCC------------Cce--------eceeEEEe-cCCcccccCCCCCC
Q 046651 78 RVLLECWDVPILGVCLGHQALGFVHGADIVHAPE------------PVH--------GRLSEIVH-NGDRLFHDIPSGQN 136 (392)
Q Consensus 78 ~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~~ape------------p~h--------G~~s~i~h-~g~~LF~~ips~~~ 136 (392)
+..++ .++|+||||+|||++...+...+...+. |+. .....+.. .++.|.+-+....
T Consensus 76 ~~Are-~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~~~h~v~l~~~S~l~~iyg~~~- 153 (229)
T PRK06186 76 RFARE-NGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSCSLVEKTGDIRLRPGSLIARAYGTLE- 153 (229)
T ss_pred HHHHH-cCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECccccccCceEEEECCCCHHHHHhCCCe-
Confidence 33333 3999999999999755544333322111 100 00122322 3444443332220
Q ss_pred cceEEEeeecceeecCC----CCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccc
Q 046651 137 SGFKVVRYHSLIIDADS----LPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIY 212 (392)
Q Consensus 137 s~f~VvryHSl~V~~~s----LP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 212 (392)
+..-.-|.+.|++.- ..++|.++||+.+ +
T Consensus 154 --i~erhrHryeVNs~h~q~i~~~GL~vsa~s~D--------------G------------------------------- 186 (229)
T PRK06186 154 --IEEGYHCRYGVNPEFVAALESGDLRVTGWDED--------------G------------------------------- 186 (229)
T ss_pred --eeeeccccEEECHHHHHHHhcCCeEEEEEcCC--------------C-------------------------------
Confidence 211123455555310 2568999999988 6
Q ss_pred cccCCcceEEEEEecCCCE-EEEeccCCCCCCc-hhHHHHHHHHHHHH
Q 046651 213 SNRMRREVLMGIMHSTRPH-YGVQFHPESIATC-YGSKILRNFREITE 258 (392)
Q Consensus 213 ~~~~~~~~vmgi~h~~~P~-~GVQFHPEsiat~-~G~~I~~NF~~l~~ 258 (392)
++++|+..+.|+ +|||||||..+.+ .-+.||+.|.+.+.
T Consensus 187 -------~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv~aa~ 227 (229)
T PRK06186 187 -------DVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFLRAAR 227 (229)
T ss_pred -------CEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHHHHHh
Confidence 899999988885 5999999986543 24689999998774
No 70
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.75 E-value=1.7e-17 Score=152.94 Aligned_cols=169 Identities=15% Similarity=0.202 Sum_probs=106.0
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHHHH-
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVLLE- 82 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll~~- 82 (392)
|+.|+.-+..|.. ....|++ .|+++++++.. +++ ..+|+|||+||+++... ..+.++ .+.|++
T Consensus 1 ~igvl~~qg~~~e-~~~~l~~-~g~~~~~v~~~----~~l-------~~~d~liipGG~~~~~~~l~~~~~l-~~~i~~~ 66 (184)
T TIGR03800 1 KIGVLALQGAVRE-HARALEA-LGVEGVEVKRP----EQL-------DEIDGLIIPGGESTTLSRLLDKYGM-FEPLRNF 66 (184)
T ss_pred CEEEEEccCCHHH-HHHHHHH-CCCEEEEECCh----HHh-------ccCCEEEECCCCHHHHHHHHHhccH-HHHHHHH
Confidence 3555555556654 5577887 79999888652 343 45999999887765421 112222 233333
Q ss_pred -cCCCCEEEEcHHHHHHHHHhC-----------CeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceee
Q 046651 83 -CWDVPILGVCLGHQALGFVHG-----------ADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIID 150 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~G-----------g~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~ 150 (392)
..++||||||.|||+|+..+. +++.+.+. |+.....+. .-.++++-.+ .+..+..|...|.
T Consensus 67 ~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~---g~~~~s~~~-~l~~~~~~~~---~~~~~~~h~~~v~ 139 (184)
T TIGR03800 67 ILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAY---GRQVDSFEA-EVDIKGVGDD---PITGVFIRAPKIV 139 (184)
T ss_pred HHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEeecc---CCccccEEE-EeecccCCCC---cceEEEEcCCCcc
Confidence 348999999999999999973 33333321 111000000 0011122111 1667789999998
Q ss_pred cCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCC
Q 046651 151 ADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRP 230 (392)
Q Consensus 151 ~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P 230 (392)
. +|++++++||+++ + +.|++ .++
T Consensus 140 ~--lp~~~~vla~~~~--------------~---------------------------------------~~a~~--~~~ 162 (184)
T TIGR03800 140 S--VGNGVEILAKVGN--------------R---------------------------------------IVAVR--QGN 162 (184)
T ss_pred c--CCCCeEEEEEeCC--------------e---------------------------------------eEEEE--eCC
Confidence 8 9999999999866 3 44664 447
Q ss_pred EEEEeccCCCCCCchhHHHHHHHHH
Q 046651 231 HYGVQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 231 ~~GVQFHPEsiat~~G~~I~~NF~~ 255 (392)
+||+|||||.. . .-++++.|++
T Consensus 163 ~~gvQfHPE~~-~--~~~~~~~f~~ 184 (184)
T TIGR03800 163 ILVSSFHPELT-D--DHRVHEYFLE 184 (184)
T ss_pred EEEEEeCCccC-C--CchHHHHhhC
Confidence 99999999983 2 2388998863
No 71
>PLN02327 CTP synthase
Probab=99.75 E-value=1.9e-17 Score=173.74 Aligned_cols=196 Identities=19% Similarity=0.225 Sum_probs=122.7
Q ss_pred ccEEEEEECC----CCchHHHHHHHHH---hCCCCeEEEeCCCCCHHH------------HHhhhcccCCcCEEEECCCC
Q 046651 4 FVRTLLIDNY----DSYTYNIYQELST---INGVPPVVVRNDEWTWRD------------ICRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 4 ~~r~LlIDny----DSyT~nl~q~L~~---v~G~~pvVV~nd~~~~ee------------l~~~l~e~~~fDgIVISpGP 64 (392)
.+||.||--| |+|. ++..+|.- .++..+.+..-+....++ +...| ..+|+||++||+
T Consensus 297 ~v~IalVGKY~~l~DAY~-Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L---~~~DGIvvpGGf 372 (557)
T PLN02327 297 PVRIAMVGKYTGLSDSYL-SVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLL---KGADGILVPGGF 372 (557)
T ss_pred ceEEEEEecccCCcHhHH-HHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhh---ccCCEEEeCCCC
Confidence 4789999777 5554 44555532 267666555433322221 11223 679999999999
Q ss_pred CCCCCCCchhHHHHHHHHcCCCCEEEEcHHHHHHHHHhCCeeeecCCCceece------eEEE--------e--------
Q 046651 65 GSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRL------SEIV--------H-------- 122 (392)
Q Consensus 65 Gsp~~~~d~gi~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~------s~i~--------h-------- 122 (392)
|++.....+. ..+..++ .++|+||||+|||+++..++..|...+...+... ..|. .
T Consensus 373 G~~~~~G~i~-ai~~are-~~iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG 450 (557)
T PLN02327 373 GDRGVEGKIL-AAKYARE-NKVPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLG 450 (557)
T ss_pred CCcccccHHH-HHHHHHH-cCCCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECC
Confidence 8875543322 2233333 4999999999999999999887766543211110 0010 0
Q ss_pred --------cCCcccccCCCCCCcceEEE--eeecceeecCCC----CCCcEEEEEecCCCCccccccCCCCCCCcccccc
Q 046651 123 --------NGDRLFHDIPSGQNSGFKVV--RYHSLIIDADSL----PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQ 188 (392)
Q Consensus 123 --------~g~~LF~~ips~~~s~f~Vv--ryHSl~V~~~sL----P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~ 188 (392)
.++.+.+-.... ..|. .-|.|.|++..+ .+++.++||+.+ +
T Consensus 451 ~~~~~~~~~~S~l~~iYg~~----~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~d--------------g------- 505 (557)
T PLN02327 451 SRRTYFQTPDCKSAKLYGNV----SFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDET--------------G------- 505 (557)
T ss_pred CcccccCCCCCHHHHHhCCc----cceeeeeccccccCHHHHHHHhhcCcEEEEEcCC--------------C-------
Confidence 111111111111 1233 345788877543 368999999876 3
Q ss_pred hhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHh
Q 046651 189 SRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDY 260 (392)
Q Consensus 189 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~ 260 (392)
.+++++++.++|+| |||||||..+.+. .+.||..|++.+...
T Consensus 506 ------------------------------~~IEaiE~~~~pffvGVQfHPE~~s~p~~~~pLF~~Fv~Aa~~~ 549 (557)
T PLN02327 506 ------------------------------RRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAASGQ 549 (557)
T ss_pred ------------------------------CEEEEEEeCCCCEEEEEEcCCCCCCCCCCchHHHHHHHHHHHHh
Confidence 17999999999988 9999999876543 589999999988754
No 72
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.74 E-value=3.9e-17 Score=154.33 Aligned_cols=193 Identities=16% Similarity=0.214 Sum_probs=126.0
Q ss_pred cEEEEEECCCCch-HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-----CCchhHHHH
Q 046651 5 VRTLLIDNYDSYT-YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-----PEDIGICLR 78 (392)
Q Consensus 5 ~r~LlIDnyDSyT-~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-----~~d~gi~~~ 78 (392)
|||+||.+..+++ +.++.++....|+++..|..++. ++ .+||+|||+||+..-.. ........+
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~~---~l-------~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~ 70 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKET---DL-------DGVDAVVLPGGFSYGDYLRCGAIAAFSPIMK 70 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCcC---CC-------CCCCEEEECCCCchhhhhccchhhhchHHHH
Confidence 7999999999995 66899998337998888866543 22 56999999887643211 111122344
Q ss_pred HHHH--cCCCCEEEEcHHHHHHHHH--hCCeeeecCCCcee--ceeE-EEecCCcccccCCCCCCcceEEEee---ecce
Q 046651 79 VLLE--CWDVPILGVCLGHQALGFV--HGADIVHAPEPVHG--RLSE-IVHNGDRLFHDIPSGQNSGFKVVRY---HSLI 148 (392)
Q Consensus 79 ll~~--~~~iPILGVCLGhQ~La~a--~Gg~V~~apep~hG--~~s~-i~h~g~~LF~~ips~~~s~f~Vvry---HSl~ 148 (392)
+|++ ..++||+|||.|+|+|+.+ +++++.+.....+. +... |..+++.+++++..+. .+.+.-. |.+.
T Consensus 71 ~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~~~~v~v~i~~~~~~~~~~~~~g~--~~~~~~aH~~~r~~ 148 (219)
T PRK03619 71 AVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVENNDTPFTSGYEKGE--VIRIPIAHGEGNYY 148 (219)
T ss_pred HHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEEEEEEEEEECCCCChhhcCCCCCC--EEEEEEEcCcccEE
Confidence 4444 3599999999999999997 88888877666653 2222 3334678888875442 1333212 3444
Q ss_pred eecCC---C-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEE
Q 046651 149 IDADS---L-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGI 224 (392)
Q Consensus 149 V~~~s---L-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi 224 (392)
++.+. | -++++++..+.. + |. .+...|.++
T Consensus 149 ~~~~~~~~l~~~~~~~~~~~~~--------------n---------------pn-----------------gs~~~ia~i 182 (219)
T PRK03619 149 ADEETLKRLEGNGQVVFRYCDE--------------N---------------PN-----------------GSVNDIAGI 182 (219)
T ss_pred ECHHHHHHHHhCCcEEEEEcCC--------------C---------------CC-----------------CCHHHhccc
Confidence 44321 2 234555544422 1 00 011268888
Q ss_pred EecCCCEEEEeccCCCCCC-----chhHHHHHHHHH
Q 046651 225 MHSTRPHYGVQFHPESIAT-----CYGSKILRNFRE 255 (392)
Q Consensus 225 ~h~~~P~~GVQFHPEsiat-----~~G~~I~~NF~~ 255 (392)
...++.++|+|||||+.+. ..|++||+||++
T Consensus 183 ~~~~~~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 183 VNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred CCCCCCEEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 8667789999999999865 479999999975
No 73
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.72 E-value=3.2e-17 Score=152.20 Aligned_cols=161 Identities=20% Similarity=0.278 Sum_probs=118.9
Q ss_pred CCCchHHHHHHHHHhCCCC---eEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhH-HHHHHHH--cCCC
Q 046651 13 YDSYTYNIYQELSTINGVP---PVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGI-CLRVLLE--CWDV 86 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~---pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi-~~~ll~~--~~~i 86 (392)
|..|-.-...+|.. -|+. ..|+.++-|..+|+.. |||+||||...+....+|+-. +..++.+ .-++
T Consensus 23 yGgy~nvfvsllg~-ege~wd~frV~~gefP~~~Dl~k-------y~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkk 94 (245)
T KOG3179|consen 23 YGGYFNVFVSLLGD-EGEQWDLFRVIDGEFPQEEDLEK-------YDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKK 94 (245)
T ss_pred hcCHHHHHHHHhcc-cCceeEEEEEecCCCCChhhhhh-------hceEEEeCCcccccccchHHHHHHHHHHHHHhhcc
Confidence 44444344455544 4554 4678888887788754 999999987777665444311 1122222 2379
Q ss_pred CEEEEcHHHHHHHHHhCCeeeecCCC---ceeceeEEE--ecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 87 PILGVCLGHQALGFVHGADIVHAPEP---VHGRLSEIV--HNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 87 PILGVCLGhQ~La~a~Gg~V~~apep---~hG~~s~i~--h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
||||||+|||+||.+.|++|.++|.+ ..|-...+. .++..+|..||.. ..+...|++.|-. +|++++.+
T Consensus 95 kvlGICFGHQiiara~Gg~Vgra~KG~~~~lg~itivk~~~~~~~yFG~~~~~----l~IikcHqDevle--~PE~a~ll 168 (245)
T KOG3179|consen 95 KVLGICFGHQIIARAKGGKVGRAPKGPDLGLGSITIVKDAEKPEKYFGEIPKS----LNIIKCHQDEVLE--LPEGAELL 168 (245)
T ss_pred ceEEEeccHHHHHHhhCCccccCCCCCcccccceEEEEecccchhhcccchhh----hhHHhhcccceec--CCchhhhh
Confidence 99999999999999999999999976 344333333 3577899999888 7788999999988 99999999
Q ss_pred EEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 162 AWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 162 Awt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
|.++. + .++++. ..+..+++|-|||.
T Consensus 169 asSe~--------------c--------------------------------------eve~fs-~~~~~l~fQGHPEy 194 (245)
T KOG3179|consen 169 ASSEK--------------C--------------------------------------EVEMFS-IEDHLLCFQGHPEY 194 (245)
T ss_pred ccccc--------------c--------------------------------------ceEEEE-ecceEEEecCCchh
Confidence 99988 7 677776 55678899999998
No 74
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.71 E-value=1.8e-16 Score=145.46 Aligned_cols=133 Identities=19% Similarity=0.264 Sum_probs=86.9
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHHHH--
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVLLE-- 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll~~-- 82 (392)
+|.+.+ .+...+ +.|++ .|+++++++.. +++ ..+|+|||+||+.+... ..+... .+.|++
T Consensus 3 vl~~qg--~~~e~~-~~l~~-~g~~v~~v~~~----~~l-------~~~dgiii~Gg~~~~~~~~~~~~~~-~~~i~~~~ 66 (183)
T cd01749 3 VLALQG--DFREHI-RALER-LGVEVIEVRTP----EDL-------EGIDGLIIPGGESTTIGKLLRRTGL-LDPLREFI 66 (183)
T ss_pred EEEecC--CcHHHH-HHHHH-CCCeEEEECCH----HHh-------ccCCEEEECCchHHHHHHHHHhCCH-HHHHHHHH
Confidence 455554 444445 77776 79999888663 233 56999999887754332 112222 333443
Q ss_pred cCCCCEEEEcHHHHHHHHHhCC------------eeeecCCC-ceeceeEEEecCCcccccCC-CCCCcceEEEeeecce
Q 046651 83 CWDVPILGVCLGHQALGFVHGA------------DIVHAPEP-VHGRLSEIVHNGDRLFHDIP-SGQNSGFKVVRYHSLI 148 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg------------~V~~apep-~hG~~s~i~h~g~~LF~~ip-s~~~s~f~VvryHSl~ 148 (392)
..++|+||||+|||+|+.++|+ +|.+.+.+ ..|+. .....+.+++ .. |.++..|...
T Consensus 67 ~~g~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~v~~~~~g~~~g~~-----~~~l~~~~~~~~~----~~~~~~h~~~ 137 (183)
T cd01749 67 RAGKPVFGTCAGLILLAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSF-----EADLDIPGLGLGP----FPAVFIRAPV 137 (183)
T ss_pred HcCCeEEEECHHHHHHHHHhcccCCCCccCceeEEEEeeccccccceE-----EEcCCCCcCCCCc----cEEEEEECcE
Confidence 2489999999999999999998 45443321 12211 1112344553 44 8999999999
Q ss_pred eecCCCCCCcEEEEEecC
Q 046651 149 IDADSLPKELIPIAWSNS 166 (392)
Q Consensus 149 V~~~sLP~~l~~iAwt~~ 166 (392)
|.. +|++++++|.++.
T Consensus 138 v~~--~p~~~~~la~~~~ 153 (183)
T cd01749 138 IEE--VGPGVEVLAEYDG 153 (183)
T ss_pred EEE--cCCCcEEEEecCC
Confidence 988 9999999999865
No 75
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.65 E-value=2.5e-15 Score=148.56 Aligned_cols=174 Identities=18% Similarity=0.159 Sum_probs=117.1
Q ss_pred ccEEEEEECCCC--ch-HHHHHHHHHhCC--CCeEEEeCCC---------------CCHHHHHhhhcccCCcCEEEECCC
Q 046651 4 FVRTLLIDNYDS--YT-YNIYQELSTING--VPPVVVRNDE---------------WTWRDICRYLYEENAFDNIVISPG 63 (392)
Q Consensus 4 ~~r~LlIDnyDS--yT-~nl~q~L~~v~G--~~pvVV~nd~---------------~~~eel~~~l~e~~~fDgIVISpG 63 (392)
.+||+|++.=.- -| .++.++|.. .. +++..++-.. .+++++.. ..|||+||+|.
T Consensus 35 pl~i~ilNlMp~k~~TE~q~~rll~~-~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~-----~~~DG~IITGA 108 (302)
T PRK05368 35 PLKILILNLMPKKIETETQFLRLLGN-TPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKD-----EKFDGLIITGA 108 (302)
T ss_pred CccEEEEeCCCCCchHHHHHHHHhcC-CCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhcc-----CCCCEEEEcCC
Confidence 478999987422 13 356666643 22 2233343333 13455544 78999999988
Q ss_pred CCC--CCCCCc-hhHHH---HHHHHcCCCCEEEEcHHHHHHHHHhCCeee-ecCCCceecee-EEEecCCcccccCCCCC
Q 046651 64 PGS--PACPED-IGICL---RVLLECWDVPILGVCLGHQALGFVHGADIV-HAPEPVHGRLS-EIVHNGDRLFHDIPSGQ 135 (392)
Q Consensus 64 PGs--p~~~~d-~gi~~---~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~-~apep~hG~~s-~i~h~g~~LF~~ips~~ 135 (392)
|-. +....+ +.-+. +++++. .+|+||||+|||++++++||... ..++...|... .+....++|+.+++..
T Consensus 109 p~e~~~fedv~YW~El~~i~~w~~~~-~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~~~~~~pL~~g~~d~- 186 (302)
T PRK05368 109 PVEQLPFEDVDYWDELKEILDWAKTH-VTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRVLDPHHPLLRGFDDS- 186 (302)
T ss_pred CCCCccCCCCchHHHHHHHHHHHHHc-CCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEEcCCCChhhcCCCCc-
Confidence 877 444433 22233 334434 89999999999999999999632 23334666433 2334467899999987
Q ss_pred CcceEEEeeecceeecC--CCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccccccc
Q 046651 136 NSGFKVVRYHSLIIDAD--SLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYS 213 (392)
Q Consensus 136 ~s~f~VvryHSl~V~~~--sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 213 (392)
|.+-..|...|..+ .+|++++++|.++. +
T Consensus 187 ---F~~phSr~~~V~~~~i~~~~~l~vLA~S~~--------------~-------------------------------- 217 (302)
T PRK05368 187 ---FLVPHSRYTEVREEDIRAATGLEILAESEE--------------A-------------------------------- 217 (302)
T ss_pred ---cccceeehhhccHHHhccCCCCEEEecCCC--------------C--------------------------------
Confidence 88887877777432 26899999999977 4
Q ss_pred ccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 214 NRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 214 ~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
-++++...+..+|++|+|||.
T Consensus 218 ------gv~~~~~~~~r~~~vQgHPEY 238 (302)
T PRK05368 218 ------GVYLFASKDKREVFVTGHPEY 238 (302)
T ss_pred ------CeEEEEeCCCCEEEEECCCCC
Confidence 466676567789999999998
No 76
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.59 E-value=6.3e-15 Score=151.65 Aligned_cols=198 Identities=20% Similarity=0.267 Sum_probs=119.0
Q ss_pred cEEEEEECC----CCchHHHHHHHHHh---CCCCeEEEeCCCCCHHH--HHhhhcccCCcCEEEECCCCCCCCCCCchhH
Q 046651 5 VRTLLIDNY----DSYTYNIYQELSTI---NGVPPVVVRNDEWTWRD--ICRYLYEENAFDNIVISPGPGSPACPEDIGI 75 (392)
Q Consensus 5 ~r~LlIDny----DSyT~nl~q~L~~v---~G~~pvVV~nd~~~~ee--l~~~l~e~~~fDgIVISpGPGsp~~~~d~gi 75 (392)
++|.|+--| |+|. ++..+|.-. ++..+.+..-|..+.++ ...+. ..+|||+|.||.|.......+.
T Consensus 289 v~IalVGKYv~l~DaY~-Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~---~~~dgIlVPGGFG~RG~eGkI~- 363 (533)
T COG0504 289 VTIALVGKYVELPDAYK-SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELE---KLVDGILVPGGFGYRGVEGKIA- 363 (533)
T ss_pred eEEEEEECCcCchhHHH-HHHHHHHhhhhhcCCceeeEEEccccccccchhhhh---hcCCEEEeCCCCCcCchHHHHH-
Confidence 788888655 5565 455555432 55555544444332222 11111 1289999999998665443332
Q ss_pred HHHHHHHcCCCCEEEEcHHHHHHHHHhCCeeeec------------CCCceeceeE-----------------EE-ecCC
Q 046651 76 CLRVLLECWDVPILGVCLGHQALGFVHGADIVHA------------PEPVHGRLSE-----------------IV-HNGD 125 (392)
Q Consensus 76 ~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~~a------------pep~hG~~s~-----------------i~-h~g~ 125 (392)
..+..++. ++|+||||||||+....+--.|... +.|+.....+ .. ..|+
T Consensus 364 Ai~yAREn-~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~gT 442 (533)
T COG0504 364 AIRYAREN-NIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPGT 442 (533)
T ss_pred HHHHHHhc-CCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCCc
Confidence 23444554 9999999999998776533222211 1122111111 01 1122
Q ss_pred cccccCCCCCCcceEEEeeecceeecCCCC----CCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhccccccc
Q 046651 126 RLFHDIPSGQNSGFKVVRYHSLIIDADSLP----KELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQ 201 (392)
Q Consensus 126 ~LF~~ips~~~s~f~VvryHSl~V~~~sLP----~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (392)
.+.+-.... ...--.-|.|.|.++..+ .+|+..+|+.+ +
T Consensus 443 ~a~~lY~~~---~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d--------------~-------------------- 485 (533)
T COG0504 443 LAAKLYGKD---EIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPD--------------G-------------------- 485 (533)
T ss_pred HHHHHhCCC---eeeeeccchhhcCHHHHHHHHhCCeEEEEEcCC--------------C--------------------
Confidence 121111111 022224578888775322 47888888876 3
Q ss_pred ccCCCcccccccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHhhh
Q 046651 202 IKNGSYRHSIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDYWK 262 (392)
Q Consensus 202 ~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~~~ 262 (392)
..++.++..++|+| |+|||||..+.+. .+.+|..|++.+.++.+
T Consensus 486 -----------------~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~~~~ 531 (533)
T COG0504 486 -----------------GLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEYKK 531 (533)
T ss_pred -----------------CeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHHhhc
Confidence 28999999999987 9999999988776 79999999999987643
No 77
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.58 E-value=4.8e-14 Score=136.00 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=58.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCch----hHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDI----GICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~----gi~~~l 79 (392)
.||++|+.++..+... .+.|++ +|.++++++.. +++ ..+|+|||.||.. ++...+ + ..+.
T Consensus 1 ~m~igVLa~qG~~~e~-~~aL~~-lG~ev~~v~~~----~~L-------~~~DgLILPGGfs--~~~~~L~~~~g-l~~~ 64 (248)
T PLN02832 1 MMAIGVLALQGSFNEH-IAALRR-LGVEAVEVRKP----EQL-------EGVSGLIIPGGES--TTMAKLAERHN-LFPA 64 (248)
T ss_pred CcEEEEEeCCCchHHH-HHHHHH-CCCcEEEeCCH----HHh-------ccCCEEEeCCCHH--HHHHHHHhhcc-hHHH
Confidence 4889999999998866 477877 79999887652 454 4599999954332 222111 2 2233
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
|++ ..++||||||+|||+|+...
T Consensus 65 I~~~v~~g~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 65 LREFVKSGKPVWGTCAGLIFLAERA 89 (248)
T ss_pred HHHHHHcCCCEEEEChhHHHHHHHh
Confidence 333 25899999999999999874
No 78
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.50 E-value=6.9e-13 Score=128.91 Aligned_cols=93 Identities=19% Similarity=0.274 Sum_probs=62.9
Q ss_pred CccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-------ch-
Q 046651 3 EFVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-------DI- 73 (392)
Q Consensus 3 ~~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-------d~- 73 (392)
..||++||...+++ ...++.+|++ .|.++++|...+.. +....+ ..||+|||.||.+..+... ..
T Consensus 2 ~~~kvaVl~~pG~n~d~e~~~Al~~-aG~~v~~v~~~~~~--~~~~~l---~~~DgLvipGGfs~gD~l~~g~~~~~~l~ 75 (261)
T PRK01175 2 ESIRVAVLRMEGTNCEDETVKAFRR-LGVEPEYVHINDLA--AERKSV---SDYDCLVIPGGFSAGDYIRAGAIFAARLK 75 (261)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHH-CCCcEEEEeecccc--ccccch---hhCCEEEECCCCCcccccccchhhHHHHH
Confidence 46899999998776 6778899988 79999888764421 111111 5699999988753222111 11
Q ss_pred hHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 74 GICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 74 gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..+.+.|++ ..++||||||+|+|+|+.+
T Consensus 76 ~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~ 105 (261)
T PRK01175 76 AVLRKDIEEFIDEGYPIIGICNGFQVLVEL 105 (261)
T ss_pred HHHHHHHHHHHHCCCeEEEECHHHHHHHHC
Confidence 112244444 3599999999999999985
No 79
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.44 E-value=4.2e-12 Score=120.26 Aligned_cols=202 Identities=17% Similarity=0.211 Sum_probs=128.7
Q ss_pred ccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC---C---CchhHH
Q 046651 4 FVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC---P---EDIGIC 76 (392)
Q Consensus 4 ~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~---~---~d~gi~ 76 (392)
+||+.||-...++ .+..+.++.. +|.+++.|...+.... ++||+||+.||. |-.+ . +.+.-.
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~~-aG~~~~~V~~~d~~~~---------~~~d~vv~pGGF-SyGDyLr~Gaiaa~~~v 70 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFER-AGFEAEDVWHSDLLLG---------RDFDGVVLPGGF-SYGDYLRAGAIAAIAPV 70 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHHH-cCCCceEEEeeecccC---------CCccEEEEcCCC-CcccccCcchHHhhHHH
Confidence 6899999998887 5788999985 8999999987664221 269999996664 2211 1 111112
Q ss_pred HHHHHH--cCCCCEEEEcHHHHHHHHH---hCCeeeecCCCceeceeE--EEecCCcccccCCCCCCcceEEEeeec---
Q 046651 77 LRVLLE--CWDVPILGVCLGHQALGFV---HGADIVHAPEPVHGRLSE--IVHNGDRLFHDIPSGQNSGFKVVRYHS--- 146 (392)
Q Consensus 77 ~~ll~~--~~~iPILGVCLGhQ~La~a---~Gg~V~~apep~hG~~s~--i~h~g~~LF~~ips~~~s~f~VvryHS--- 146 (392)
++-+++ ..+.|+||||.|+|+|.++ -|+-+.....-+..+... |+.+.+.++.++..+. .+.+.--|.
T Consensus 71 ~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v~l~V~~~~t~ft~~~~~g~--~i~ipVAHgEGr 148 (231)
T COG0047 71 MDEVREFAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVENNNTPFTSGYEGGE--VIPIPVAHGEGR 148 (231)
T ss_pred HHHHHHHHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCceEEEEEEEEEecCCCHHHHhcCCCc--eEEEEEeeccee
Confidence 222222 3699999999999999976 355555555556666655 3456677777776642 255544452
Q ss_pred ceeecCC---CC-CCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEE
Q 046651 147 LIIDADS---LP-KELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLM 222 (392)
Q Consensus 147 l~V~~~s---LP-~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vm 222 (392)
+.++.+. |- ++.+++-+.+.. + +-+...||+++.. -|.
T Consensus 149 ~~~~~~~l~~l~~ngqvvfrY~d~~-------------G--------~~~~~~NPNGS~~-----------------~Ia 190 (231)
T COG0047 149 YYADDETLAELEENGQVVFRYVDNN-------------G--------ETEEYANPNGSVN-----------------GIA 190 (231)
T ss_pred EEccHHHHHHHhhCCeEEEEEecCC-------------C--------ceeeeeCCCCChh-----------------hce
Confidence 3333221 22 233444444331 1 0011134444333 799
Q ss_pred EEEecCCCEEEEeccCCCCC-----CchhHHHHHHHHHH
Q 046651 223 GIMHSTRPHYGVQFHPESIA-----TCYGSKILRNFREI 256 (392)
Q Consensus 223 gi~h~~~P~~GVQFHPEsia-----t~~G~~I~~NF~~l 256 (392)
||...+.++.|++-|||++. +++|..||++.++.
T Consensus 191 GI~n~~G~V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~ 229 (231)
T COG0047 191 GITNEDGNVLGMMPHPERASESLLGGEDGLRLFRSARKY 229 (231)
T ss_pred eEEcCCCCEEEecCCchhhhhcccCCchHHHHHHHHHHh
Confidence 99999999999999999975 56789999998764
No 80
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.44 E-value=2.2e-12 Score=123.32 Aligned_cols=201 Identities=15% Similarity=0.169 Sum_probs=116.1
Q ss_pred EEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-----chhH-HHHH
Q 046651 7 TLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-----DIGI-CLRV 79 (392)
Q Consensus 7 ~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-----d~gi-~~~l 79 (392)
++||-.+.++ .+.++..|++ .|+++++|..++. .+. ...+ ..||+|||+||+...+... .... ..++
T Consensus 1 v~vl~~pG~n~~~~~~~al~~-aG~~v~~v~~~~~-~~~-~~~l---~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~ 74 (238)
T cd01740 1 VAVLRFPGSNCDRDMAYAFEL-AGFEAEDVWHNDL-LAG-RKDL---DDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEE 74 (238)
T ss_pred CEEEEcCCcCCHHHHHHHHHH-cCCCEEEEeccCC-ccc-cCCH---hhCCEEEECCCCCcccccccccccccChhHHHH
Confidence 3566666564 5678899988 7999999987653 111 0011 5699999988874322211 1111 3445
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHH--hCCeeeecCCCceece-----eE--EEecCCcccccCCCCCCcceEEEeeecc-
Q 046651 80 LLE--CWDVPILGVCLGHQALGFV--HGADIVHAPEPVHGRL-----SE--IVHNGDRLFHDIPSGQNSGFKVVRYHSL- 147 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a--~Gg~V~~apep~hG~~-----s~--i~h~g~~LF~~ips~~~s~f~VvryHSl- 147 (392)
+++ ..++||||||.|+|+|+.+ +++++...+....... .. |..+++.++..+..+ +.+.+.--|..
T Consensus 75 l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~~~~g--~~l~~~vaHgeG 152 (238)
T cd01740 75 VKEFAERGGLVLGICNGFQILVELGLLPGALIRNKGLKFICRWQNRFVTLRVENNDSPFTKGYMEG--EVLRIPVAHGEG 152 (238)
T ss_pred HHHHHhCCCeEEEECcHHHHHHHcCCCccccccCCCCceeccccCceEEEEEcCCCCceecCCCCC--CEEEEEeECCce
Confidence 544 3599999999999999997 7888877665444321 11 334456666653221 12666666643
Q ss_pred --eeecCCC----CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceE
Q 046651 148 --IIDADSL----PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVL 221 (392)
Q Consensus 148 --~V~~~sL----P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 221 (392)
..+++.| ..+.+. -+.+.. + ......-.||+++. .-|
T Consensus 153 ~~~~~~~~~~~l~~~~~i~-~y~~~~-------------~------~~~~~yp~NPnGs~-----------------~~i 195 (238)
T cd01740 153 RFYADDETLAELEENGQIA-QYVDDD-------------G------NVTERYPANPNGSL-----------------DGI 195 (238)
T ss_pred eeEcCHHHHHHHHHCCCEE-EEEcCC-------------C------CccccCCCCCCCCh-----------------hcc
Confidence 2222111 112222 222110 1 00001112233221 269
Q ss_pred EEEEecCCCEEEEeccCCCCCCc----------hhHHHHHH
Q 046651 222 MGIMHSTRPHYGVQFHPESIATC----------YGSKILRN 252 (392)
Q Consensus 222 mgi~h~~~P~~GVQFHPEsiat~----------~G~~I~~N 252 (392)
.||...+..++|+..|||+.... .|.+||+|
T Consensus 196 Agi~~~~GrvlglMphPer~~~~~q~~~~~~~~~~~~~F~~ 236 (238)
T cd01740 196 AGICNEDGRVLGMMPHPERAVEPWQWERLLGGSDGLKLFRN 236 (238)
T ss_pred eEEEcCCCCEEEEcCChHHcccccccccccCCCccHHHHhh
Confidence 99999999999999999996543 57788876
No 81
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.35 E-value=1.2e-11 Score=122.74 Aligned_cols=178 Identities=26% Similarity=0.280 Sum_probs=121.0
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC----chhHHHHHHHH
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE----DIGICLRVLLE 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~----d~gi~~~ll~~ 82 (392)
+-|||....+..+|-.+|+- +|..+.-|++ ..|+. ..|.+|+ ||.|.....- ..|... -|++
T Consensus 4 v~~ld~~agn~~si~nal~h-lg~~i~~v~~----P~DI~-------~a~rLIf-PGVGnfg~~~D~L~~~Gf~e-plr~ 69 (541)
T KOG0623|consen 4 VTLLDYGAGNVRSIRNALRH-LGFSIKDVQT----PGDIL-------NADRLIF-PGVGNFGPAMDVLNRTGFAE-PLRK 69 (541)
T ss_pred EEEEecCCccHHHHHHHHHh-cCceeeeccC----chhhc-------cCceEee-cCcccchHHHHHHhhhhhHH-HHHH
Confidence 56889888888899999987 8999877764 34553 4788888 8888765322 234332 2333
Q ss_pred --cCCCCEEEEcHHHHHHHHH-------hC-----Ceeeec-----CCCceeceeEEEecCCcccccCCCCCCcceEEEe
Q 046651 83 --CWDVPILGVCLGHQALGFV-------HG-----ADIVHA-----PEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVR 143 (392)
Q Consensus 83 --~~~iPILGVCLGhQ~La~a-------~G-----g~V~~a-----pep~hG~~s~i~h~g~~LF~~ips~~~s~f~Vvr 143 (392)
..++|++|||+|.|+|... -| +.|.+. +-|+.||.+.-...++.+|...|.. +++.
T Consensus 70 YiesgkPfmgicvGlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~sd~effg~~p~~-----~~YF 144 (541)
T KOG0623|consen 70 YIESGKPFMGICVGLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGSDSEFFGDVPNR-----HVYF 144 (541)
T ss_pred HHhcCCCeEeehhhHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccccccCCcccccccCCCc-----eEEE
Confidence 3599999999999999763 01 222221 2357777776445566777777765 6788
Q ss_pred eecceeecC--CCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceE
Q 046651 144 YHSLIIDAD--SLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVL 221 (392)
Q Consensus 144 yHSl~V~~~--sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 221 (392)
.||+.+.+. +|+..--.+|.+.+ ++.+ .|
T Consensus 145 VHSyl~~ek~~~len~~wkiat~kY--------------G~E~-----------------------------------Fi 175 (541)
T KOG0623|consen 145 VHSYLNREKPKSLENKDWKIATCKY--------------GSES-----------------------------------FI 175 (541)
T ss_pred EeeecccccccCCCCCCceEeeecc--------------CcHH-----------------------------------HH
Confidence 899976552 24333223555555 4222 45
Q ss_pred EEEEecCCCEEEEeccCCCCCCchhHHHHHHHHH
Q 046651 222 MGIMHSTRPHYGVQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 222 mgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~ 255 (392)
.+| ...+++++|||||+ +.+.|...+++|+.
T Consensus 176 ~ai--~knN~~AtQFHPEK-SG~aGL~vl~~FL~ 206 (541)
T KOG0623|consen 176 SAI--RKNNVHATQFHPEK-SGEAGLSVLRRFLH 206 (541)
T ss_pred HHH--hcCceeeEeccccc-ccchhHHHHHHHHh
Confidence 556 35689999999999 88899999999996
No 82
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.31 E-value=7.2e-11 Score=109.02 Aligned_cols=167 Identities=16% Similarity=0.191 Sum_probs=106.5
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCC--CCCCchhHHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP--ACPEDIGICLRVLLE 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp--~~~~d~gi~~~ll~~ 82 (392)
||+.++.-+..+.. -...|.. .|.++++++. .+++ ..+|+|||.||+++. ....+.+ +.+.|++
T Consensus 3 ~~igVLalqG~~~E-h~~al~~-lG~~v~~v~~----~~~l-------~~~D~LILPGG~~t~~~~ll~~~~-l~~~Ik~ 68 (179)
T PRK13526 3 QKVGVLAIQGGYQK-HADMFKS-LGVEVKLVKF----NNDF-------DSIDRLVIPGGESTTLLNLLNKHQ-IFDKLYN 68 (179)
T ss_pred cEEEEEECCccHHH-HHHHHHH-cCCcEEEECC----HHHH-------hCCCEEEECCChHHHHHHHhhhcC-cHHHHHH
Confidence 89999999888875 5566766 6888877763 3454 459999997665443 1122223 2344444
Q ss_pred -cCCCCEEEEcHHHHHHHHH---hC---CeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCC
Q 046651 83 -CWDVPILGVCLGHQALGFV---HG---ADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLP 155 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a---~G---g~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP 155 (392)
..++|++|||.|+|+|+.. +| ++|.+.. +|+...-....-. +.++ . |+.++..--.|.+ ..
T Consensus 69 ~~~~kpilGICaG~qlL~~~s~~Lg~idg~V~Rn~---~Grq~~sf~~~~~-~~~~--~----~~~vFiRAP~i~~--~~ 136 (179)
T PRK13526 69 FCSSKPVFGTCAGSIILSKGEGYLNLLDLEVQRNA---YGRQVDSFVADIS-FNDK--N----ITGVFIRAPKFIV--VG 136 (179)
T ss_pred HHcCCcEEEEcHHHHHHHccCCCCCCccEEEEEcC---CCCccceeeeecC-cCCc--e----EEEEEEcCceEeE--cC
Confidence 2367999999999999983 22 4444433 2222110000000 1122 2 7788888888877 77
Q ss_pred CCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEe
Q 046651 156 KELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQ 235 (392)
Q Consensus 156 ~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQ 235 (392)
++++++|+-++ .+-++ +..++.+.-
T Consensus 137 ~~v~vla~~~~-----------------------------------------------------~~v~v--~q~~~l~~~ 161 (179)
T PRK13526 137 NQVDILSKYQN-----------------------------------------------------SPVLL--RQANILVSS 161 (179)
T ss_pred CCcEEEEEECC-----------------------------------------------------EEEEE--EECCEEEEE
Confidence 89999998754 34455 467899999
Q ss_pred ccCCCCCCchhHHHHHHHHH
Q 046651 236 FHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 236 FHPEsiat~~G~~I~~NF~~ 255 (392)
||||- |. ..++.+.|++
T Consensus 162 FHPEl--t~-d~r~h~~f~~ 178 (179)
T PRK13526 162 FHPEL--TQ-DPTVHEYFLA 178 (179)
T ss_pred eCCcc--CC-CchHHHHHhc
Confidence 99998 32 3477777765
No 83
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.22 E-value=3.7e-11 Score=122.52 Aligned_cols=49 Identities=27% Similarity=0.421 Sum_probs=35.1
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCCCEEEEcHHHHHHHHHhC
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHG 103 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~iPILGVCLGhQ~La~a~G 103 (392)
...|||++.||.|+......+. ..++.++. ++|.||||||||+-..-+-
T Consensus 362 ~~adGilvPGGFG~RGveG~i~-Aak~ARen-~iP~LGiCLGmQ~AvIEfa 410 (585)
T KOG2387|consen 362 KSADGILVPGGFGDRGVEGKIL-AAKWAREN-KIPFLGICLGMQLAVIEFA 410 (585)
T ss_pred ccCCeEEeCCcccccchhHHHH-HHHHHHhc-CCCeEeeehhhhHHHHHHH
Confidence 3589999998888765433332 23444554 9999999999998766543
No 84
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.09 E-value=1.9e-10 Score=110.03 Aligned_cols=171 Identities=18% Similarity=0.256 Sum_probs=100.9
Q ss_pred HHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCch--hHHHHHHHH---cCCCCEEEEcHHHHH
Q 046651 23 ELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDI--GICLRVLLE---CWDVPILGVCLGHQA 97 (392)
Q Consensus 23 ~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~--gi~~~ll~~---~~~iPILGVCLGhQ~ 97 (392)
.+++..|+.++.+..+++ -+.+...| .-.+|||++||-..-....++ .+....++. -..+||+|+|||+.+
T Consensus 84 K~aEsgGARViPli~nep-Ee~lfqkl---elvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~ 159 (340)
T KOG1559|consen 84 KLAESGGARVIPLIYNEP-EEILFQKL---ELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFEL 159 (340)
T ss_pred HHHHcCCceEEEEecCCc-HHHHHHHH---HHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHH
Confidence 445558999999999997 44444444 668999998885443322221 222344443 137999999999999
Q ss_pred HHHHh--CCeeeecCCCceeceeEEE-----ecCCcccccCCCCCC----cceEEEeeecceeecCCCC------CCcEE
Q 046651 98 LGFVH--GADIVHAPEPVHGRLSEIV-----HNGDRLFHDIPSGQN----SGFKVVRYHSLIIDADSLP------KELIP 160 (392)
Q Consensus 98 La~a~--Gg~V~~apep~hG~~s~i~-----h~g~~LF~~ips~~~----s~f~VvryHSl~V~~~sLP------~~l~~ 160 (392)
|.... |..+...-..+.- .+.+. .....+|+.+|.... ..--|.+.|.+.|.+.+.. .-+.+
T Consensus 160 lsmiISqnrdile~~d~vd~-AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFni 238 (340)
T KOG1559|consen 160 LSMIISQNRDILERFDAVDV-ASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFFNI 238 (340)
T ss_pred HHHHHhcChhHHHhhccccc-ccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHHHHHHhh
Confidence 99874 2222221111100 01111 113467888776521 0124678899888775321 12222
Q ss_pred EEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 161 IAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 161 iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
+..+.| + .....|..++....|++|+|||||+
T Consensus 239 lTT~~D--------------~----------------------------------~~k~fvSTv~~~kYPvtgfQWHPEK 270 (340)
T KOG1559|consen 239 LTTCTD--------------G----------------------------------NSKTFVSTVESKKYPVTGFQWHPEK 270 (340)
T ss_pred eeeecC--------------C----------------------------------CceEEEEeecceeccceeeeecCcc
Confidence 222222 1 1122788888888999999999999
Q ss_pred CCCchh
Q 046651 241 IATCYG 246 (392)
Q Consensus 241 iat~~G 246 (392)
.+-++|
T Consensus 271 nafEWg 276 (340)
T KOG1559|consen 271 NAFEWG 276 (340)
T ss_pred Cccccc
Confidence 876655
No 85
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.86 E-value=1.3e-08 Score=99.20 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=54.4
Q ss_pred ccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-chhH------
Q 046651 4 FVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DIGI------ 75 (392)
Q Consensus 4 ~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~gi------ 75 (392)
++|++|+-...+. .+.++.+++. .|++++.|...+. +++- ..| .+||+|||.||.+--+... ...+
T Consensus 1 kpkV~Vl~~pGtNce~e~~~A~~~-aG~~~~~v~~~dl-~~~~-~~l---~~~~~lvipGGFS~gD~l~sg~~~a~~~~~ 74 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCERETAAAFEN-AGFEPEIVHINDL-LSGE-SDL---DDFDGLVIPGGFSYGDYLRSGAIAAARLLF 74 (259)
T ss_dssp --EEEEEE-TTEEEHHHHHHHHHC-TT-EEEEEECCHH-HTTS---G---CC-SEEEE-EE-GGGGTTSTTHHHHHHHCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-cCCCceEEEEEec-cccc-Cch---hhCcEEEECCccCccccchHHHHHHHHhhc
Confidence 3799999998887 5789999988 6999988875442 2210 112 7899999977764322211 1111
Q ss_pred ---HHHHHHH---cCCCCEEEEcHHHHHHHHH
Q 046651 76 ---CLRVLLE---CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 76 ---~~~ll~~---~~~iPILGVCLGhQ~La~a 101 (392)
+.+.|++ ..+.||||||.|+|+|...
T Consensus 75 ~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 75 NSPLMDAIREFLERPGGFVLGICNGFQILVEL 106 (259)
T ss_dssp SCCCHHHHHHHHHCTT-EEEEECHHHHHHCCC
T ss_pred cHHHHHHHHHHHhcCCCeEEEEchHhHHHHHh
Confidence 1222222 2399999999999999886
No 86
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.86 E-value=9e-08 Score=109.51 Aligned_cols=211 Identities=14% Similarity=0.147 Sum_probs=121.5
Q ss_pred CccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCC-------HHHHHhhhcccCCcCEEEECCCCCCCCCC---C
Q 046651 3 EFVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWT-------WRDICRYLYEENAFDNIVISPGPGSPACP---E 71 (392)
Q Consensus 3 ~~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~-------~eel~~~l~e~~~fDgIVISpGPGsp~~~---~ 71 (392)
..||++|+-...++ .+..+.++.+ +|++++.|...+.. .+++...| ..|++|+|.||..-=+.+ .
T Consensus 976 ~kpkvaIl~~pGtNce~d~a~Af~~-aG~~~~~v~~~dl~~~~i~~s~~~~~~~l---~~~~~l~~pGGFSyGD~l~~~~ 1051 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSEYDSAKAFEK-EGAEVNLVIFRNLNEEALVESVETMVDEI---DKSQILMLPGGFSAGDEPDGSA 1051 (1239)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH-cCCceEEEEEecCcccccccchhhhhccc---ccCcEEEEcCccCcccccchhH
Confidence 46999999999887 4778999987 79888777654421 22222223 679999997776332222 1
Q ss_pred ch--hH-----HHHHHHH--cCCCCEEEEcHHHHHHHHH---hCCeeeecCC-----------CceeceeE--EEecCCc
Q 046651 72 DI--GI-----CLRVLLE--CWDVPILGVCLGHQALGFV---HGADIVHAPE-----------PVHGRLSE--IVHNGDR 126 (392)
Q Consensus 72 d~--gi-----~~~ll~~--~~~iPILGVCLGhQ~La~a---~Gg~V~~ape-----------p~hG~~s~--i~h~g~~ 126 (392)
.+ .+ +.+-+.+ .++.++||||.|+|+|... .++++....+ -+..+... |..+.++
T Consensus 1052 ~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~N~s~rf~~r~v~~~v~~~~s~ 1131 (1239)
T TIGR01857 1052 KFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTYNDINRHVSKIVRTRIASTNSP 1131 (1239)
T ss_pred HHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCccccccccCCceeeecCCCCeEEeeeEEEECCCCCh
Confidence 11 11 1111222 3699999999999999886 2333322111 12222222 3345678
Q ss_pred ccccCCCCCCcceEEEeeecc---eeecCCC----CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhccccc
Q 046651 127 LFHDIPSGQNSGFKVVRYHSL---IIDADSL----PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDIS 199 (392)
Q Consensus 127 LF~~ips~~~s~f~VvryHSl---~V~~~sL----P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (392)
++.++..+. .+.+.--|.. ..+++.| -.+.+.+-+.+.. + ......-.||++
T Consensus 1132 ~~~~~~~g~--~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~-------------g------~~t~~~p~NPNG 1190 (1239)
T TIGR01857 1132 WLSGVSVGD--IHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFN-------------G------KPSMDSKYNPNG 1190 (1239)
T ss_pred hHhcCCCCC--EEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCC-------------C------CcccCCCCCCCC
Confidence 887776442 2555545532 2221111 1244555554331 1 000011223433
Q ss_pred ccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCC--------chhHHHHHHHHH
Q 046651 200 TQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT--------CYGSKILRNFRE 255 (392)
Q Consensus 200 ~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat--------~~G~~I~~NF~~ 255 (392)
+.. -|.||...+..++|.+-||||... ..|..||+|..+
T Consensus 1191 S~~-----------------~IaGi~s~dGrvlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1191 SSL-----------------AIEGITSPDGRIFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred Chh-----------------hhhEeECCCCCEEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 332 799999999999999999999642 235899988764
No 87
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.69 E-value=2.7e-08 Score=91.68 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=74.5
Q ss_pred CCcCEEEECCCCCCCCCCCch---hHHHHHHHH--cCCCCEEEEcHHHHHHHHHhCCee-eecCCCceeceeEEEecCCc
Q 046651 53 NAFDNIVISPGPGSPACPEDI---GICLRVLLE--CWDVPILGVCLGHQALGFVHGADI-VHAPEPVHGRLSEIVHNGDR 126 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~---gi~~~ll~~--~~~iPILGVCLGhQ~La~a~Gg~V-~~apep~hG~~s~i~h~g~~ 126 (392)
..|||+||+|.|-.-...++. .-..+++.. ...+|+||||+|+|+..+++||.. ...++...|....-....++
T Consensus 61 ~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~~Gvf~~~~~~~hp 140 (175)
T cd03131 61 AKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFGVFPHTILEPHP 140 (175)
T ss_pred cCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCceEEEEEeeecCCCc
Confidence 789999999888654443332 222333332 237999999999999999998885 77788888855432223789
Q ss_pred ccccCCCCCCcceEEEeeecceeecCCC--CCCcEEEE
Q 046651 127 LFHDIPSGQNSGFKVVRYHSLIIDADSL--PKELIPIA 162 (392)
Q Consensus 127 LF~~ips~~~s~f~VvryHSl~V~~~sL--P~~l~~iA 162 (392)
|+.+++.. |.+-..|...|..+.+ .++|+++|
T Consensus 141 L~~g~~d~----F~~PhSR~~~v~~~~~~~~~~l~il~ 174 (175)
T cd03131 141 LLRGLDDG----FDVPHSRYAEVDREDIEEAAGLTILA 174 (175)
T ss_pred cccCCCCc----eeecCcccccCCHHHHhhCCCCEEcc
Confidence 99999988 9988777667765434 45666654
No 88
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.69 E-value=3.9e-07 Score=84.36 Aligned_cols=176 Identities=16% Similarity=0.242 Sum_probs=105.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVLLE 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll~~ 82 (392)
|||.++-....+...+ +.|.+..|.+++.|+. .+++ ...|++||.||-.+.-. ..+.++...+...
T Consensus 1 m~IGVLalQG~v~EH~-~~l~~~~~~e~~~Vk~----~~dL-------~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~ 68 (194)
T COG0311 1 MKIGVLALQGAVEEHL-EALEKAGGAEVVEVKR----PEDL-------EGVDGLIIPGGESTTIGRLLKRYGLLEPLREF 68 (194)
T ss_pred CeEEEEEecccHHHHH-HHHHhhcCCceEEEcC----HHHh-------ccCcEEEecCccHHHHHHHHHHcCcHHHHHHH
Confidence 6777777766665433 4455533688888764 4565 45999999666543211 2233444444333
Q ss_pred -cCCCCEEEEcHHHHHHHHH-hCCeeeecCCCceeceeE-EEec--CC--cc------cccCCCCCCcceEEEeeeccee
Q 046651 83 -CWDVPILGVCLGHQALGFV-HGADIVHAPEPVHGRLSE-IVHN--GD--RL------FHDIPSGQNSGFKVVRYHSLII 149 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a-~Gg~V~~apep~hG~~s~-i~h~--g~--~L------F~~ips~~~s~f~VvryHSl~V 149 (392)
..++|++|.|-|+-+|+.- .++ -..+..|.... |.-| |. .- ++++-..- .|..++...-.|
T Consensus 69 ~~~G~Pv~GTCAGlIlLakei~~~----~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~~--~~~avFIRAP~I 142 (194)
T COG0311 69 IADGLPVFGTCAGLILLAKEILDG----PEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFGLPF--PFPAVFIRAPVI 142 (194)
T ss_pred HHcCCceEEechhhhhhhhhhcCC----CCCcccceEEEEEEccccccccccceeeEEeecccCCC--cceEEEEEccee
Confidence 3599999999999999954 431 22233333222 1111 10 01 11121110 055677788888
Q ss_pred ecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCC
Q 046651 150 DADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTR 229 (392)
Q Consensus 150 ~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~ 229 (392)
++ ..++++++||-++ .+-|.+ +.
T Consensus 143 ~~--vg~~V~vLa~l~~-----------------------------------------------------~iVav~--qg 165 (194)
T COG0311 143 EE--VGDGVEVLATLDG-----------------------------------------------------RIVAVK--QG 165 (194)
T ss_pred eh--hcCcceEeeeeCC-----------------------------------------------------EEEEEE--eC
Confidence 77 5558999998766 444553 56
Q ss_pred CEEEEeccCCCCCCchhHHHHHHHHHHHH
Q 046651 230 PHYGVQFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 230 P~~GVQFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
++.++-||||- |.+ .++.+.|++++.
T Consensus 166 n~LatsFHPEL--T~D-~r~Heyf~~~v~ 191 (194)
T COG0311 166 NILATSFHPEL--TDD-TRLHEYFLDMVL 191 (194)
T ss_pred CEEEEecCccc--cCC-ccHHHHHHHHhh
Confidence 99999999998 322 377888888775
No 89
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.60 E-value=1.1e-06 Score=101.48 Aligned_cols=93 Identities=22% Similarity=0.212 Sum_probs=61.2
Q ss_pred CccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCC--CCCCCCch---hH-
Q 046651 3 EFVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG--SPACPEDI---GI- 75 (392)
Q Consensus 3 ~~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPG--sp~~~~d~---gi- 75 (392)
..+|++|+-...++ .+.++.++.. .|++++.|...+. .+. ...| ..|++|||.||.. +.-..... .+
T Consensus 1036 ~~pkVaVl~~pGtN~~~e~~~Af~~-aGf~~~~V~~~dl-~~~-~~~L---~~~~glv~pGGFSyGD~l~sg~~wa~~i~ 1109 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGDREMAAAFYA-AGFEPWDVTMSDL-LNG-RISL---DDFRGIVFVGGFSYADVLDSAKGWAGSIR 1109 (1307)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH-cCCceEEEEeeec-ccc-cccc---cceeEEEEcCcCCCccccchHHHHHHHHH
Confidence 46899999998887 4778899986 7999877776543 111 1112 6799999988763 22221111 11
Q ss_pred ----HHHHHHH---cCCCCEEEEcHHHHHHHHH
Q 046651 76 ----CLRVLLE---CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 76 ----~~~ll~~---~~~iPILGVCLGhQ~La~a 101 (392)
+.+-+.+ ..+.++||||.|+|+|...
T Consensus 1110 ~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1110 FNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred hChHHHHHHHHHHhCCCceEEEEcHHHHHHHHc
Confidence 1122222 2489999999999999986
No 90
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=98.54 E-value=1.8e-07 Score=86.85 Aligned_cols=159 Identities=21% Similarity=0.306 Sum_probs=86.8
Q ss_pred HHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHHHH--cCCCCEEEEcHHHHH
Q 046651 22 QELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVLLE--CWDVPILGVCLGHQA 97 (392)
Q Consensus 22 q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll~~--~~~iPILGVCLGhQ~ 97 (392)
..|.+ +|.+++.|+.. +++ ..+|++||.||-.+.-. ....++...+... .+++||||+|-|+-+
T Consensus 13 ~~l~~-lg~~~~~Vr~~----~dL-------~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIl 80 (188)
T PF01174_consen 13 RMLER-LGAEVVEVRTP----EDL-------EGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLIL 80 (188)
T ss_dssp HHHHH-TTSEEEEE-SG----GGG-------TT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHH
T ss_pred HHHHH-cCCCeEEeCCH----HHH-------ccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHH
Confidence 34555 68888888753 455 34899999655432110 1223433333222 224999999999999
Q ss_pred HHHHhCCeeeecCCCceeceeE-EEec--CCcc--------cccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEecC
Q 046651 98 LGFVHGADIVHAPEPVHGRLSE-IVHN--GDRL--------FHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNS 166 (392)
Q Consensus 98 La~a~Gg~V~~apep~hG~~s~-i~h~--g~~L--------F~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt~~ 166 (392)
|+.-.... .....|.+.. |.-| |.++ +.++... |..++..--.|.+-.-|++..++|.-+.
T Consensus 81 La~~v~~~----~q~~Lg~ldi~V~RNafGrQ~~SFe~~l~i~~~~~~----~~avFIRAP~I~~v~~~~~v~vla~~~g 152 (188)
T PF01174_consen 81 LAKEVEGQ----GQPLLGLLDITVRRNAFGRQLDSFEADLDIPGLGEP----FPAVFIRAPVIEEVGSPEGVEVLAELDG 152 (188)
T ss_dssp HEEEECSS----CCTSS--EEEEEETTTTCSSSCEEEEEEEETTTESE----EEEEESS--EEEEE--TTTEEEEEEETT
T ss_pred hhhhhhhc----ccccccceeEEEEccccccchhcEEEEEEeecCCCc----EEEEEcCCcEEEEeeccccccccccccc
Confidence 98743222 2222232221 1111 1111 1222222 7888888777776322367777776654
Q ss_pred CCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCchh
Q 046651 167 ADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246 (392)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~~G 246 (392)
.+-+++ ..++.++-||||- |.+|
T Consensus 153 -----------------------------------------------------~iVav~--qgn~latsFHPEL--T~D~ 175 (188)
T PF01174_consen 153 -----------------------------------------------------KIVAVR--QGNILATSFHPEL--TDDD 175 (188)
T ss_dssp -----------------------------------------------------EEEEEE--ETTEEEESS-GGG--SSTH
T ss_pred -----------------------------------------------------ceEEEE--ecCEEEEEeCCcc--cCch
Confidence 333454 5689999999997 7677
Q ss_pred HHHHHHHHHHH
Q 046651 247 SKILRNFREIT 257 (392)
Q Consensus 247 ~~I~~NF~~l~ 257 (392)
.++.+.|++++
T Consensus 176 ~r~H~yFl~~v 186 (188)
T PF01174_consen 176 TRIHEYFLEMV 186 (188)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 89999999876
No 91
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.50 E-value=3.6e-06 Score=97.55 Aligned_cols=208 Identities=15% Similarity=0.154 Sum_probs=114.3
Q ss_pred CccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-chhHH----
Q 046651 3 EFVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DIGIC---- 76 (392)
Q Consensus 3 ~~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~gi~---- 76 (392)
..+|++|+-...++ .+.++.++.. .|++++.|...+..-.+.. | .+|++|||.||..-=+... -.++.
T Consensus 1054 ~~p~vail~~pG~N~~~e~~~Af~~-aGf~~~~v~~~dl~~~~~~--l---~~~~~lv~~GGFSygD~lgsg~~~a~~i~ 1127 (1310)
T TIGR01735 1054 VRPKVAILREQGVNGDREMAAAFDR-AGFEAWDVHMSDLLAGRVH--L---DEFRGLAACGGFSYGDVLGAGKGWAKSIL 1127 (1310)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH-hCCCcEEEEEeccccCCcc--h---hheeEEEEcCCCCCccchhHHHHHHHHHH
Confidence 35899999988887 4678888986 7998888876553222211 1 5699999988753222111 11111
Q ss_pred -----HHHHHH---cCCCCEEEEcHHHHHHHHHhC----Ce----eee-cCCCceeceeE--EEecCCcccccCCCCCCc
Q 046651 77 -----LRVLLE---CWDVPILGVCLGHQALGFVHG----AD----IVH-APEPVHGRLSE--IVHNGDRLFHDIPSGQNS 137 (392)
Q Consensus 77 -----~~ll~~---~~~iPILGVCLGhQ~La~a~G----g~----V~~-apep~hG~~s~--i~h~g~~LF~~ips~~~s 137 (392)
.+-+.+ ..+.++||||.|+|+|....| +. ..+ ...-+..+... |..+.+.+|+++. + +
T Consensus 1128 ~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~~~~p~l~~N~s~~fe~r~~~~~v~~s~s~~~~~~~-g--~ 1204 (1310)
T TIGR01735 1128 FNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVASVRVGESPSIMLRGMA-G--S 1204 (1310)
T ss_pred hChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCCCCCceeeecCCCCeEEeeeEEEECCCCChhhhhcC-C--C
Confidence 122222 358999999999999994433 11 111 11122222222 3345677777764 3 2
Q ss_pred ceEEEeeecc---ee-ecCC---C-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccc
Q 046651 138 GFKVVRYHSL---II-DADS---L-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRH 209 (392)
Q Consensus 138 ~f~VvryHSl---~V-~~~s---L-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (392)
.+.+.--|.. .+ +++. | -.+.+.+-+.+.. + ......-.||+++..
T Consensus 1205 ~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~-------------g------~~~~~yp~NPNGS~~------- 1258 (1310)
T TIGR01735 1205 RLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDD-------------G------NPTEAYPLNPNGSPG------- 1258 (1310)
T ss_pred EEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCC-------------C------CccCCCCCCCCCChh-------
Confidence 2555555533 11 1110 1 1234444443321 1 000011123332222
Q ss_pred ccccccCCcceEEEEEecCCCEEEEeccCCCCC---------C-----chhHHHHHHHHH
Q 046651 210 SIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA---------T-----CYGSKILRNFRE 255 (392)
Q Consensus 210 ~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia---------t-----~~G~~I~~NF~~ 255 (392)
-|.||...+..|+|++.|||+.. . ..+.+||+|-++
T Consensus 1259 ----------~IaGi~s~dGrvl~~MpHPEr~~~~~q~~~~p~~~~~~~pw~~~F~na~~ 1308 (1310)
T TIGR01735 1259 ----------GIAGITSCDGRVTIMMPHPERVFRAWQNSWRPEDWDEDTPWLRLFRNARN 1308 (1310)
T ss_pred ----------cceEeECCCCCEEEEcCCHHHhhhHhhCCcCCCCCCCCCcHHHHHHHHHH
Confidence 69999999999999999999952 1 135677777654
No 92
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.45 E-value=5.4e-06 Score=96.16 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=61.3
Q ss_pred CccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc-hhH-----
Q 046651 3 EFVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED-IGI----- 75 (392)
Q Consensus 3 ~~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d-~gi----- 75 (392)
..+|++|+-...++ .+.++.++.. .|++++.|...+..-... .| .+|++|||.||..-=+.... .++
T Consensus 1034 ~~pkv~il~~pG~N~~~e~~~Af~~-aG~~~~~v~~~dl~~~~~--~l---~~~~~l~~~GGFS~gD~lgsg~~~a~~~~ 1107 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVEMAAAFDR-AGFDAIDVHMSDLLAGRV--TL---EDFKGLVACGGFSYGDVLGAGEGWAKSIL 1107 (1290)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH-cCCCeEEEEeecCcCCCC--Ch---hhCcEEEECCccCCcccchHHHHHHHHhh
Confidence 35899999998887 4778899986 799887776544321111 12 56999999877533222110 111
Q ss_pred ----HHHHHHH---cCCCCEEEEcHHHHHHHHH
Q 046651 76 ----CLRVLLE---CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 76 ----~~~ll~~---~~~iPILGVCLGhQ~La~a 101 (392)
+.+-+.+ ..+.++||||.|+|+|...
T Consensus 1108 ~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1108 FNPRLRDQFEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred ccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHh
Confidence 1122222 3599999999999999997
No 93
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.39 E-value=2.5e-06 Score=84.67 Aligned_cols=110 Identities=21% Similarity=0.214 Sum_probs=65.4
Q ss_pred CCcCEEEECCCCCCCCCCCc---hhHHHHHHHH--cCCCCEEEEcHHHHH-HHHHhCCeeeecCCCceeceeEE-EecCC
Q 046651 53 NAFDNIVISPGPGSPACPED---IGICLRVLLE--CWDVPILGVCLGHQA-LGFVHGADIVHAPEPVHGRLSEI-VHNGD 125 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d---~gi~~~ll~~--~~~iPILGVCLGhQ~-La~a~Gg~V~~apep~hG~~s~i-~h~g~ 125 (392)
..|||+||+|-|=.--.-++ +.-+.+++.. ..-.+.|.||+|.|+ |.+.+|-.-...++...|...-- ....+
T Consensus 97 ~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfGVf~~~~~~~~~ 176 (298)
T PF04204_consen 97 RKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKLFGVFEHRVLDPDH 176 (298)
T ss_dssp S-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEEEEEEEES-SS-
T ss_pred CCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCcceeceeeeccCCCC
Confidence 78999999977754333222 2333344443 237899999999998 88888999999998888865442 34578
Q ss_pred cccccCCCCCCcceEEEeeecceeecCCC--CCCcEEEEEecC
Q 046651 126 RLFHDIPSGQNSGFKVVRYHSLIIDADSL--PKELIPIAWSNS 166 (392)
Q Consensus 126 ~LF~~ips~~~s~f~VvryHSl~V~~~sL--P~~l~~iAwt~~ 166 (392)
+|++|++.. |.+-..-.-.|+.+.+ .++|.++|+++.
T Consensus 177 pLl~Gfdd~----f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~ 215 (298)
T PF04204_consen 177 PLLRGFDDT----FFAPHSRYTEIDRDDIKKAPGLEVLAESEE 215 (298)
T ss_dssp GGGTT--SE----EEEEEEEEEE--HHHHCT-TTEEEEEEETT
T ss_pred hhhcCCCcc----ccCCcccccCCCHHHHhcCCCcEEEeccCC
Confidence 999999877 8775332223333324 568999999987
No 94
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.20 E-value=2.5e-06 Score=79.24 Aligned_cols=82 Identities=21% Similarity=0.134 Sum_probs=54.3
Q ss_pred EEEEECC-CCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-C-C--chhHHHHHHH
Q 046651 7 TLLIDNY-DSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-P-E--DIGICLRVLL 81 (392)
Q Consensus 7 ~LlIDny-DSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~-~--d~gi~~~ll~ 81 (392)
++||+.. -++...+.+++.. .|+++++++..+. + ..+|+|||.||. +... . . ..+ ..+.|+
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~-~G~~~~~~~~~~~----~-------~~~d~lilpGg~-~~~~~~~~~~~~~-~~~~i~ 66 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLARE-PGVDVRYVEVPEG----L-------GDADLIILPGSK-DTIQDLAWLRKRG-LAEAIK 66 (194)
T ss_pred CEeecCCCccCHHHHHHHHhc-CCceEEEEeCCCC----C-------CCCCEEEECCCc-chHHHHHHHHHcC-HHHHHH
Confidence 4677775 3556667777766 7999999876552 2 468999996555 3321 0 0 111 223333
Q ss_pred H--cCCCCEEEEcHHHHHHHHHh
Q 046651 82 E--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 82 ~--~~~iPILGVCLGhQ~La~a~ 102 (392)
+ ..++||||||.|+|+|+...
T Consensus 67 ~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 67 NYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHHHCCCcEEEECHHHHHhhhhc
Confidence 3 24999999999999999986
No 95
>PHA03366 FGAM-synthase; Provisional
Probab=98.13 E-value=4.6e-05 Score=88.59 Aligned_cols=92 Identities=20% Similarity=0.149 Sum_probs=63.2
Q ss_pred CccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-chhH-----
Q 046651 3 EFVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DIGI----- 75 (392)
Q Consensus 3 ~~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~gi----- 75 (392)
.++|++|+-...++ .+.++.++.. .|++++.|...+..-..+ | .+|++|||.||.+.-+... ..++
T Consensus 1027 ~~prVaIl~~pG~N~~~e~~~Af~~-aGf~~~~v~~~dL~~~~~---l---~~f~glv~~GGFS~gD~l~~~~~~a~~il 1099 (1304)
T PHA03366 1027 KRHRVAVLLLPGCPGPHALLAAFTN-AGFDPYPVSIEELKDGTF---L---DEFSGLVIGGSSGAEDSYTGARAAVAALL 1099 (1304)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH-cCCceEEEEeecCCCCCc---c---ccceEEEEcCCCCCcccccHHHHHHHHhh
Confidence 35899999988877 4778999987 799988887655422232 2 6799999987775433221 1121
Q ss_pred ----HHHHHHH---cCCCCEEEEcH-HHHHHHHH
Q 046651 76 ----CLRVLLE---CWDVPILGVCL-GHQALGFV 101 (392)
Q Consensus 76 ----~~~ll~~---~~~iPILGVCL-GhQ~La~a 101 (392)
+.+.+.+ ..|.++||||. |+|+|...
T Consensus 1100 ~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1100 SNPAVRDALLRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred hchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHc
Confidence 1122222 35999999998 99999986
No 96
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=98.03 E-value=2.8e-05 Score=77.06 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=74.0
Q ss_pred CCcCEEEECCCCCCCCCCCc---hhHHHHHHHH--cCCCCEEEEcHHHHH-HHHHhCCeeeecCCCceeceeE-EEecCC
Q 046651 53 NAFDNIVISPGPGSPACPED---IGICLRVLLE--CWDVPILGVCLGHQA-LGFVHGADIVHAPEPVHGRLSE-IVHNGD 125 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d---~gi~~~ll~~--~~~iPILGVCLGhQ~-La~a~Gg~V~~apep~hG~~s~-i~h~g~ 125 (392)
..|||+||+|-|=.--.-++ +.-+.+++.. ..-..+|.||+|.|+ |-+..|-.-...++...|...- +. ..+
T Consensus 98 ~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfGVf~h~~~-~~~ 176 (300)
T TIGR01001 98 RKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKLSGVYKHDIA-PDS 176 (300)
T ss_pred CCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCceEEeecCccC-CCC
Confidence 78999999987754322222 3334444443 237899999999998 6667798888899888885442 33 678
Q ss_pred cccccCCCCCCcceEEEeeecceeecCCC--CCCcEEEEEecC
Q 046651 126 RLFHDIPSGQNSGFKVVRYHSLIIDADSL--PKELIPIAWSNS 166 (392)
Q Consensus 126 ~LF~~ips~~~s~f~VvryHSl~V~~~sL--P~~l~~iAwt~~ 166 (392)
+|+.|+... |.+-....-.|+.+.+ .++|.++|.++.
T Consensus 177 pL~rGfdd~----f~~PhSR~t~i~~~~i~~~~~L~vla~s~e 215 (300)
T TIGR01001 177 LLLRGFDDF----FLAPHSRYADFDAEDIDKVTDLEILAESDE 215 (300)
T ss_pred ccccCCCCc----cccCCCCCCCCCHHHHhcCCCCeEEecCCC
Confidence 999999877 7764221112443323 358999998876
No 97
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.81 E-value=6.5e-05 Score=79.18 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=49.5
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCch-hHHHHHHHHc
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDI-GICLRVLLEC 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~-gi~~~ll~~~ 83 (392)
|||.|+.- .++++++......++.++..+. .+++ ..+|.|||.| |.-....++ .-..+.+++.
T Consensus 1 m~iGvlal-----~sv~~al~~lg~~~~~vv~~~~--~~~l-------~~~D~lILPG--G~~~~~~~l~~~l~~~i~~~ 64 (476)
T PRK06278 1 MEIGLLDI-----KGSLPCFENFGNLPTKIIDENN--IKEI-------KDLDGLIIPG--GSLVESGSLTDELKKEILNF 64 (476)
T ss_pred CEEEEEeh-----hhHHHHHHHhcCCCcEEEEeCC--hHHh-------ccCCEEEECC--CchhhcchHHHHHHHHHHHc
Confidence 67888874 3555677664333666655444 3555 4599999943 321111221 1123444445
Q ss_pred CCCCEEEEcHHHHHHHHHh
Q 046651 84 WDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~ 102 (392)
+.||||||.|+|+|+...
T Consensus 65 -g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 65 -DGYIIGICSGFQILSEKI 82 (476)
T ss_pred -CCeEEEEcHHHHhccccc
Confidence 899999999999999864
No 98
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=97.76 E-value=4.8e-05 Score=70.97 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-CCch---hHHHHHHHH--cCCCCEEEEc
Q 046651 19 NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-PEDI---GICLRVLLE--CWDVPILGVC 92 (392)
Q Consensus 19 nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~~d~---gi~~~ll~~--~~~iPILGVC 92 (392)
.-++.|++ .|++++++..-.. +++ ..+|+|||.| |.+.. ...+ .-..+.|++ ..++||+|||
T Consensus 15 e~~~~l~~-~G~~v~~~s~~~~--~~l-------~~~D~lilPG--G~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgIC 82 (198)
T cd03130 15 ENLELLEA-AGAELVPFSPLKD--EEL-------PDADGLYLGG--GYPELFAEELSANQSMRESIRAFAESGGPIYAEC 82 (198)
T ss_pred HHHHHHHH-CCCEEEEECCCCC--CCC-------CCCCEEEECC--CchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEc
Confidence 34566776 7999988765211 122 3489999944 33331 1111 112344444 2489999999
Q ss_pred HHHHHHHHHh
Q 046651 93 LGHQALGFVH 102 (392)
Q Consensus 93 LGhQ~La~a~ 102 (392)
.|+|+|+...
T Consensus 83 gG~qlL~~~~ 92 (198)
T cd03130 83 GGLMYLGESL 92 (198)
T ss_pred ccHHHHHHHh
Confidence 9999999974
No 99
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.67 E-value=0.00062 Score=78.99 Aligned_cols=91 Identities=22% Similarity=0.228 Sum_probs=60.4
Q ss_pred ccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-CchhHH-----
Q 046651 4 FVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-EDIGIC----- 76 (392)
Q Consensus 4 ~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~d~gi~----- 76 (392)
+.||+|+-...++ .+.++.++.. .|++++.|...+..-.+. | .+|++|||.||.+--+.. +..++.
T Consensus 929 ~p~VaIl~~pG~N~~~e~~~Af~~-aGf~~~~v~~~dl~~~~~---l---~~f~glv~~Ggfsy~D~lgsg~~~a~~il~ 1001 (1202)
T TIGR01739 929 RHQVAVLLLPGQSVPHGLLAALTN-AGFDPRIVSITELKKTDF---L---DTFSGLIIGGASGTLDSEVGARALAAALLR 1001 (1202)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHH-cCCceEEEEeccCCCCCc---h---hheEEEEEcCcCCCCccchHHHHHHHHhhc
Confidence 4689999888776 5778999987 799988887655422221 1 469999997666432211 111111
Q ss_pred ----HHHHHH---cCCCCEEEEcH-HHHHHHHH
Q 046651 77 ----LRVLLE---CWDVPILGVCL-GHQALGFV 101 (392)
Q Consensus 77 ----~~ll~~---~~~iPILGVCL-GhQ~La~a 101 (392)
.+-+.+ ..+.++||||. |+|+|...
T Consensus 1002 n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 1002 NQAFLRDLLTFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred chHHHHHHHHHHhCCCceEEEeCcHHHHHHHHc
Confidence 122222 34999999997 99999986
No 100
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.67 E-value=0.00024 Score=55.57 Aligned_cols=85 Identities=26% Similarity=0.334 Sum_probs=53.7
Q ss_pred EEECCCCch---HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc--
Q 046651 9 LIDNYDSYT---YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC-- 83 (392)
Q Consensus 9 lIDnyDSyT---~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~-- 83 (392)
++...++.. ..+++.+.. .+.++.++......... . .+...||+|||++|+..+..........+.++++
T Consensus 3 i~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~-~---~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~ 77 (115)
T cd01653 3 VLLFPGFEELELASPLDALRE-AGAEVDVVSPDGGPVES-D---VDLDDYDGLILPGGPGTPDDLARDEALLALLREAAA 77 (115)
T ss_pred EEecCCCchhhhHHHHHHHHH-CCCeEEEEcCCCCceec-c---CChhccCEEEECCCCCchhhhccCHHHHHHHHHHHH
Confidence 444434443 567888877 68888888776642110 0 0115699999987776655432112234444442
Q ss_pred CCCCEEEEcHHHHHH
Q 046651 84 WDVPILGVCLGHQAL 98 (392)
Q Consensus 84 ~~iPILGVCLGhQ~L 98 (392)
.+.|++|+|.|+|++
T Consensus 78 ~~~~i~~~c~g~~~l 92 (115)
T cd01653 78 AGKPILGICLGAQLL 92 (115)
T ss_pred cCCEEEEECchhHhH
Confidence 378999999999999
No 101
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.58 E-value=0.00024 Score=53.04 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHH
Q 046651 18 YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 18 ~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGh 95 (392)
.++++.+.+ .+..+.++......... ......+|.||+++|+..+..........+.+.+ ..+.|++|+|.|.
T Consensus 15 ~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 89 (92)
T cd03128 15 ASPLDALRE-AGAEVDVVSPDGGPVES----DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGA 89 (92)
T ss_pred ecHHHHHHh-CCCEEEEEeCCCCcccc----cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEeccc
Confidence 577888887 57888888776652211 0112679999998887776554212223344433 2379999999999
Q ss_pred HHH
Q 046651 96 QAL 98 (392)
Q Consensus 96 Q~L 98 (392)
|++
T Consensus 90 ~~~ 92 (92)
T cd03128 90 QLL 92 (92)
T ss_pred ccC
Confidence 864
No 102
>PRK00784 cobyric acid synthase; Provisional
Probab=97.24 E-value=0.00042 Score=73.15 Aligned_cols=87 Identities=22% Similarity=0.242 Sum_probs=52.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC---chhHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE---DIGICLRVL 80 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~---d~gi~~~ll 80 (392)
.+||.|+..--.+.+.=++.|.+..|++++++...+ ++ ..+|+|||.||.-.-.+.+ ..++ .+.|
T Consensus 251 ~~~i~v~~~~~a~~f~nl~~l~~~~g~~v~~~s~~~----~l-------~~~d~lilpGg~~~~~~~~~~~~~~l-~~~i 318 (488)
T PRK00784 251 ALRIAVIRLPRISNFTDFDPLRAEPGVDVRYVRPGE----PL-------PDADLVILPGSKNTIADLAWLRESGW-DEAI 318 (488)
T ss_pred ceEEEEEeCCCcCCccChHHHhhcCCCeEEEECCcc----cc-------ccCCEEEECCccchHHHHHHHHHcCH-HHHH
Confidence 368888873223333334556554799988886532 33 4589999965542211111 1122 2333
Q ss_pred HH--cCCCCEEEEcHHHHHHHHHh
Q 046651 81 LE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 81 ~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
++ ..+.||||||.|+|+|+...
T Consensus 319 ~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 319 RAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHcCCeEEEECHHHHHHhhhc
Confidence 33 24899999999999999975
No 103
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.10 E-value=0.00067 Score=63.85 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=55.6
Q ss_pred ccEEEEEECC----CCchHHHHHHHHHhC-CCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----Cchh
Q 046651 4 FVRTLLIDNY----DSYTYNIYQELSTIN-GVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIG 74 (392)
Q Consensus 4 ~~r~LlIDny----DSyT~nl~q~L~~v~-G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~g 74 (392)
..|+++|-.- +.|..++.+.+.. + |++++++.--+ -+++...| ..+|.|+++| |+.... .+.+
T Consensus 31 ~~~i~~IptAs~~~~~~~~~~~~a~~~-l~G~~~~~~~~~~--~~~~~~~l---~~ad~I~l~G--G~~~~~~~~l~~~~ 102 (212)
T cd03146 31 RPKVLFVPTASGDRDEYTARFYAAFES-LRGVEVSHLHLFD--TEDPLDAL---LEADVIYVGG--GNTFNLLAQWREHG 102 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhh-ccCcEEEEEeccC--cccHHHHH---hcCCEEEECC--chHHHHHHHHHHcC
Confidence 4688888543 4566677788877 7 88887664211 11222223 5699999965 554321 1112
Q ss_pred HHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 75 ICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 75 i~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..++|++ .++.|++|+|.|+|+++..
T Consensus 103 -l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 103 -LDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred -HHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 2333443 2589999999999999875
No 104
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=96.99 E-value=0.0031 Score=58.18 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=37.4
Q ss_pred CCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-CCc-hhH--HHHHHHHcCCCCEEEEcHHHHHHHHHh
Q 046651 29 GVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-PED-IGI--CLRVLLECWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 29 G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~~d-~gi--~~~ll~~~~~iPILGVCLGhQ~La~a~ 102 (392)
++...|..-. +.+|+. ++|++||.||-.+... ... -++ ++.-+-....+|+||.|-||-.|..-.
T Consensus 40 ~Ik~~~~tVK--T~~D~a-------q~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ql 108 (226)
T KOG3210|consen 40 EIKLSVMTVK--TKNDLA-------QCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQL 108 (226)
T ss_pred eEEEEEEeec--CHHHHh-------hCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhhh
Confidence 4444444443 357764 5999999666543221 111 121 111122245699999999999988754
No 105
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.98 E-value=0.0014 Score=68.98 Aligned_cols=84 Identities=20% Similarity=0.261 Sum_probs=57.2
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchh------HHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIG------ICL 77 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~g------i~~ 77 (392)
.++|+++...--=++.-+..|+..-++.+.+|+.... + ...|.||| ||+-...+|+. +-.
T Consensus 251 ~i~Iav~~lp~isNFtD~dpL~~~~~v~v~~v~~~~~----l-------~~~dlvIl---PGsk~t~~DL~~lr~~g~d~ 316 (486)
T COG1492 251 AIRIAVIRLPRISNFTDFDPLRAEPDVRVRFVKPGSD----L-------RDADLVIL---PGSKNTIADLKILREGGMDE 316 (486)
T ss_pred ceEEEEecCCCccccccchhhhcCCCeEEEEeccCCC----C-------CCCCEEEe---CCCcccHHHHHHHHHcCHHH
Confidence 3677777543222444566676545888888876653 3 45899999 67766656653 344
Q ss_pred HHHHHc-CCCCEEEEcHHHHHHHHH
Q 046651 78 RVLLEC-WDVPILGVCLGHQALGFV 101 (392)
Q Consensus 78 ~ll~~~-~~iPILGVCLGhQ~La~a 101 (392)
++++.. .+.||+|||-|+|||+..
T Consensus 317 ~i~~~~~~~~~viGICGG~QmLG~~ 341 (486)
T COG1492 317 KILEYARKGGDVIGICGGYQMLGRR 341 (486)
T ss_pred HHHHHHhCCCCEEEEcchHHhhhhh
Confidence 555553 389999999999999986
No 106
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=96.79 E-value=0.0098 Score=56.68 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=35.4
Q ss_pred CCcCEEEECCCCCCCCCCCc----------hhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 53 NAFDNIVISPGPGSPACPED----------IGICLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d----------~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
.+||+|||.||-|.+....| -....+++++ ..++||..||-|-++|+.+.
T Consensus 84 ~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 84 EDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 57999999888665322111 2234556655 35899999999999998875
No 107
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=96.78 E-value=0.0033 Score=65.73 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=52.2
Q ss_pred cEEEEEECCC-CchHH-HHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC---CCchhHHHHH
Q 046651 5 VRTLLIDNYD-SYTYN-IYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC---PEDIGICLRV 79 (392)
Q Consensus 5 ~r~LlIDnyD-SyT~n-l~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~---~~d~gi~~~l 79 (392)
+||.|+-..- +|+|. =++.|++ .|++++.++.-.. +++ ..+|+|||.||...-.. ....+ ..+.
T Consensus 246 ~~iava~d~af~f~y~e~~~~L~~-~g~~~~~~~~~~~--~~l-------~~~D~lilpGG~~~~~~~~l~~~~~-~~~~ 314 (451)
T PRK01077 246 VRIAVARDAAFNFYYPENLELLRA-AGAELVFFSPLAD--EAL-------PDCDGLYLGGGYPELFAAELAANTS-MRAS 314 (451)
T ss_pred ceEEEEecCcccccHHHHHHHHHH-CCCEEEEeCCcCC--CCC-------CCCCEEEeCCCchhhHHHHHhhCch-hHHH
Confidence 5787775432 22221 3466765 7988887764211 122 45899999766422111 11222 2344
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
|++ ..+.||+|||-|+|+|+...
T Consensus 315 i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 315 IRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 444 35889999999999999985
No 108
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.75 E-value=0.0047 Score=56.06 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=33.6
Q ss_pred CcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.||.|||.||++......+ ....++|++ ..++||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~-~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLD-EKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccC-HHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 6899999888753221122 234566655 3589999999999999986
No 109
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=96.55 E-value=0.0069 Score=53.79 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=33.2
Q ss_pred CcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.||.|||.||++ +.....-....++|++ ..++||.|||-|.++|+.+
T Consensus 60 ~~D~vvv~Gg~~-~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 60 EYDALVIPGGRA-PEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HCcEEEECCCCC-HHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 599999988876 3221121234555655 3589999999999999985
No 110
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=96.53 E-value=0.011 Score=56.23 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=35.8
Q ss_pred CCcCEEEECCCCCCCCCCCc----------hhHHHHHHHH--cCCCCEEEEcHHHHHHHHHhC
Q 046651 53 NAFDNIVISPGPGSPACPED----------IGICLRVLLE--CWDVPILGVCLGHQALGFVHG 103 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d----------~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~G 103 (392)
.+||+|||.||.+.+....| -....+++++ ..++||.+||-|-++|+.+.+
T Consensus 81 ~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 81 ADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred hHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 57999999888664322211 2234555555 358999999999999998763
No 111
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=96.27 E-value=0.0087 Score=62.66 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=51.1
Q ss_pred cEEEEEECCCCchH---HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-----chhHH
Q 046651 5 VRTLLIDNYDSYTY---NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-----DIGIC 76 (392)
Q Consensus 5 ~r~LlIDnyDSyT~---nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-----d~gi~ 76 (392)
+||.++-.. .|.+ .=+..|++ .|++++.++.-.. +++ ..+|+|+|.||- |.... ..++
T Consensus 245 ~~Iava~d~-afnFy~~~~~~~L~~-~g~~~~~~~~~~d--~~l-------~~~d~l~ipGG~--~~~~~~~l~~~~~~- 310 (449)
T TIGR00379 245 VRIAVAQDQ-AFNFYYQDNLDALTH-NAAELVPFSPLED--TEL-------PDVDAVYIGGGF--PELFAEELSQNQAL- 310 (449)
T ss_pred cEEEEEech-hhceeHHHHHHHHHH-CCCEEEEECCccC--CCC-------CCCCEEEeCCcH--HHHHHHHHHhhhHH-
Confidence 678777542 3332 34466766 6998888765211 122 358999996654 22111 1122
Q ss_pred HHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 77 LRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 77 ~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
.+.|++ ..+.||||+|-|+|+|+...
T Consensus 311 ~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 311 RDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 233333 24899999999999999986
No 112
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=96.16 E-value=0.017 Score=51.21 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=33.4
Q ss_pred CcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.||.|||.+|++ +....+-....++|++ ..++||.|||-|-++|+.+
T Consensus 62 ~~D~lvvpGG~~-~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 62 DYDALVIPGGTN-PDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred HCCEEEECCCCC-hhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 589999988874 2222222334566655 3599999999999999986
No 113
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=96.12 E-value=0.022 Score=55.84 Aligned_cols=116 Identities=17% Similarity=0.195 Sum_probs=70.1
Q ss_pred CHHHHHhhhcccCCcCEEEECCCCCCCCC---CCchhHHHHHHHH--cCCCCEEEEcHHHHHHHH-HhCCeeeecCCCce
Q 046651 41 TWRDICRYLYEENAFDNIVISPGPGSPAC---PEDIGICLRVLLE--CWDVPILGVCLGHQALGF-VHGADIVHAPEPVH 114 (392)
Q Consensus 41 ~~eel~~~l~e~~~fDgIVISpGPGsp~~---~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~-a~Gg~V~~apep~h 114 (392)
+|+++.. ..|||.||+|-|----. .+-+.-+.+++.. ..=--.|=||.|.|+--+ .+|-.-...++...
T Consensus 91 tfeeVk~-----~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~Kl~ 165 (307)
T COG1897 91 TFEEVKD-----QKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEKLS 165 (307)
T ss_pred cHHHHhh-----cccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchhhh
Confidence 4677776 89999999987743222 2223444455543 224467899999996544 46777777777666
Q ss_pred eceeE-EEecCCcccccCCCCCCcceEEE-eeecceeecCCCC--CCcEEEEEecC
Q 046651 115 GRLSE-IVHNGDRLFHDIPSGQNSGFKVV-RYHSLIIDADSLP--KELIPIAWSNS 166 (392)
Q Consensus 115 G~~s~-i~h~g~~LF~~ips~~~s~f~Vv-ryHSl~V~~~sLP--~~l~~iAwt~~ 166 (392)
|...- +....+.|+.|+... |.+- .-|.. |..+.+. ++|++++.+..
T Consensus 166 GVy~h~~l~p~~~l~rGfdd~----f~~PhSR~t~-~~~e~i~~~~~LeIL~es~e 216 (307)
T COG1897 166 GVYKHDILSPHSLLTRGFDDS----FLAPHSRYTD-VPKEDILAVPDLEILAESKE 216 (307)
T ss_pred ceeeccccCccchhhccCCcc----ccCccccccc-CCHHHHhhCCCceeeecccc
Confidence 65432 334577889888766 5543 11222 2222122 36888887765
No 114
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=96.10 E-value=0.019 Score=55.12 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=36.1
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+||+|+|.||.|...+..+-..+.+++++ ..++||-.||-|-++|..+
T Consensus 93 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 93 DDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 579999998887654443322334566655 3589999999999999987
No 115
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=95.98 E-value=0.0077 Score=63.59 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=44.3
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC---chhHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE---DIGICLRVLL 81 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~---d~gi~~~ll~ 81 (392)
+||.|+..--.+.+.=++.|+.. + .+++... .+++ ..+|+|+|.||.-...... ..++ .+.|+
T Consensus 248 ~~Iav~~~~~~~nf~~~~~L~~~---~--~~~f~~~-~~~l-------~~~d~lilpGg~~~~~~~~~l~~~~~-~~~i~ 313 (475)
T TIGR00313 248 IRIGVVRLPRISNFTDFEPLRYE---A--FVKFLDL-DDSL-------TGCDAVIIPGSKSTIADLYALKQSGF-AEEIL 313 (475)
T ss_pred cEEEEEcCCcccCccChHHHhhC---C--CeEEeCC-cccc-------ccCCEEEECCcchHHHHHHHHHhcCh-HHHHH
Confidence 67888872222222245566552 2 2222221 1233 4589999944431111111 1122 23333
Q ss_pred H--cCCCCEEEEcHHHHHHHHHh
Q 046651 82 E--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 82 ~--~~~iPILGVCLGhQ~La~a~ 102 (392)
+ ..+.||||||.|+|+|+...
T Consensus 314 ~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 314 DFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred HHHHcCCcEEEEcHHHHHhhhhh
Confidence 3 24899999999999999974
No 116
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=95.96 E-value=0.0059 Score=54.93 Aligned_cols=49 Identities=24% Similarity=0.200 Sum_probs=30.2
Q ss_pred CCcCEEEECCCCCCCCCC---CchhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 53 NAFDNIVISPGPGSPACP---EDIGICLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~---~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
..+|+|+|.||.-..... +..++. .-|++ ..+.||+|+|-|+|+|++..
T Consensus 6 ~~~D~i~lpGg~pe~~~~~l~~~~~~~-~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 6 PDADGIYLPGGYPELFALELSRNRGLK-EAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHhCHH-HHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 579999994332111111 111222 33333 34899999999999999986
No 117
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=95.68 E-value=0.017 Score=50.04 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=25.4
Q ss_pred CCcCEEEECCCCCCCCCC----CchhHHHHHHHH--cCCCCEEEEcHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACP----EDIGICLRVLLE--CWDVPILGVCLGHQAL 98 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~----~d~gi~~~ll~~--~~~iPILGVCLGhQ~L 98 (392)
..+|.||+ || |+.... ...+ .+.|++ ..+.|+||||+|.-+.
T Consensus 43 ~~ad~lVl-PG-Ga~~~~~~~L~~~g--~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVV-PG-GADLPYCRALNGKG--NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEE-CC-CChHHHHHHHHhhC--cHHHHHHHHCCCcEEEEecCccce
Confidence 46899999 55 654321 1122 233333 2489999999995443
No 118
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=95.23 E-value=0.044 Score=47.60 Aligned_cols=77 Identities=22% Similarity=0.203 Sum_probs=47.6
Q ss_pred HHHHHHHHhCCCCeEEEeCCCC--------------CHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 19 NIYQELSTINGVPPVVVRNDEW--------------TWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 19 nl~q~L~~v~G~~pvVV~nd~~--------------~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
.+++.+.. +|.++.++..+.- +++++.. ..||.|||.+|++......+..-..++|++
T Consensus 19 ~~~~~~~~-a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~-----~~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~ 92 (142)
T cd03132 19 ALKAALKA-AGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPS-----VLFDAVVVPGGAEAAFALAPSGRALHFVTEAF 92 (142)
T ss_pred HHHHHHHH-CCCEEEEEecCcCceecCCCcEEecceeecCCCh-----hhcCEEEECCCccCHHHHccChHHHHHHHHHH
Confidence 35566665 7888888764321 1112111 259999997776543221122234556655
Q ss_pred cCCCCEEEEcHHHHHHHHH
Q 046651 83 CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a 101 (392)
..+.||.+||-|-.+|+.+
T Consensus 93 ~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 93 KHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred hcCCeEEEcCchHHHHHHc
Confidence 3589999999999999985
No 119
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=95.19 E-value=0.069 Score=46.88 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=52.3
Q ss_pred EEEEECCCCchH-HHHHHHHHhCCCCeEEEeCCCC---------------CHHHHHhhhcccCCcCEEEECCCCCCCCCC
Q 046651 7 TLLIDNYDSYTY-NIYQELSTINGVPPVVVRNDEW---------------TWRDICRYLYEENAFDNIVISPGPGSPACP 70 (392)
Q Consensus 7 ~LlIDnyDSyT~-nl~q~L~~v~G~~pvVV~nd~~---------------~~eel~~~l~e~~~fDgIVISpGPGsp~~~ 70 (392)
+|+.|....... .+++.|.. .|.++.++..+.- +++++.. .+||.|||.||++.+...
T Consensus 3 il~~~gf~~~e~~~~~~~~~~-a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~-----~~~D~liipGg~~~~~~~ 76 (163)
T cd03135 3 VILADGFEEIEAVTPVDVLRR-AGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNL-----DDYDAIVIPGGLPGAQNL 76 (163)
T ss_pred EEecCCcchHHHHHHHHHHHH-CCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCC-----CCCCEEEECCCCchHHHH
Confidence 455565544443 34555555 5677666643321 1222211 479999997776433222
Q ss_pred CchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 71 EDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 71 ~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+.....++|++ ..+.+|.+||-|-.+|+.+
T Consensus 77 ~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 77 ADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred HhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 222334566655 3589999999999999986
No 120
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=95.10 E-value=0.13 Score=47.19 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=33.5
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|+|.||++.+....+.....++|++ ..+.+|.+||-|-.+|...
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~ 115 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVP 115 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHh
Confidence 469999997776544432233335566665 3589999999999876543
No 121
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=95.10 E-value=0.34 Score=54.62 Aligned_cols=194 Identities=14% Similarity=0.160 Sum_probs=104.7
Q ss_pred ccEEEEEECCCCchH-HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-CchhHHH----
Q 046651 4 FVRTLLIDNYDSYTY-NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-EDIGICL---- 77 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~-nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~d~gi~~---- 77 (392)
.+||.||--..++-+ .+.-.+.. .|++++-|.-.+. +.. ...| .+|-||+..||..-.+.. +..|+..
T Consensus 1058 ~PkVAilREeGvNg~rEMa~af~~-AgF~~~DVtmtDl-L~G-~~~l---d~frGlaf~GGFSYaDvLgSakGWAasil~ 1131 (1320)
T KOG1907|consen 1058 APKVAILREEGVNGDREMAAAFYA-AGFETVDVTMTDL-LAG-RHHL---DDFRGLAFCGGFSYADVLGSAKGWAASILF 1131 (1320)
T ss_pred CCceEEeeccccccHHHHHHHHHH-cCCceeeeeeehh-hcC-ceeH---hHhcceeeecCcchHhhhccccchhhheee
Confidence 468899987777754 35555655 7998877765543 221 1112 579999998886322110 1112211
Q ss_pred --HHH------HHcCCCCEEEEcHHHHHHHHH--hCCeeeecCCC---------ceeceeEEE--ecCCcccccCCCCCC
Q 046651 78 --RVL------LECWDVPILGVCLGHQALGFV--HGADIVHAPEP---------VHGRLSEIV--HNGDRLFHDIPSGQN 136 (392)
Q Consensus 78 --~ll------~~~~~iPILGVCLGhQ~La~a--~Gg~V~~apep---------~hG~~s~i~--h~g~~LF~~ips~~~ 136 (392)
.++ ....|.=-||||.|.|+|++. .|-.+...|.- .-+|...+. .+.+-+..++...
T Consensus 1132 ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~p~~~~~p~~~l~~Nes~rfE~r~~~vkI~~~~SIml~gM~gs-- 1209 (1320)
T KOG1907|consen 1132 NESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIGPEVGKWPDVFLDHNESGRFECRFGMVKIESNVSIMLSGMAGS-- 1209 (1320)
T ss_pred ChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccCccccCCCceeeecccccceeeeEEEEEeCCCchhhhccccCC--
Confidence 111 112377789999999999997 33333333321 122222222 2233344444322
Q ss_pred cceEEEeeecce---eec-----CCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcc
Q 046651 137 SGFKVVRYHSLI---IDA-----DSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYR 208 (392)
Q Consensus 137 s~f~VvryHSl~---V~~-----~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 208 (392)
..-|+--|... ... .-..+++..|-+.++. + .. --..-.||+++..
T Consensus 1210 -~LgvwvAHGEGRa~f~~e~~~e~~~~~gl~~iryvdd~-------------g-~~-----te~yPfNpNGS~~------ 1263 (1320)
T KOG1907|consen 1210 -VLGVWVAHGEGRATFRSEQNLEHLKKEGLVCIRYVDDY-------------G-NV-----TELYPFNPNGSPD------ 1263 (1320)
T ss_pred -ceeeEEEecccceecCcHHHHHHHhhcCeeEEEEecCC-------------C-CE-----eeecccCCCCCcc------
Confidence 24555556322 111 1123577777776652 1 00 0001223333222
Q ss_pred cccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 209 HSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 209 ~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
-|.||...+..|.+++-||||+.
T Consensus 1264 -----------gIAgicSpdGRhLAMMPHpER~~ 1286 (1320)
T KOG1907|consen 1264 -----------GIAGICSPDGRHLAMMPHPERVF 1286 (1320)
T ss_pred -----------cceeeeCCCCCeeeccCCchhee
Confidence 69999999999999999999964
No 122
>PRK04155 chaperone protein HchA; Provisional
Probab=94.93 E-value=0.077 Score=52.74 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=35.4
Q ss_pred cCCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 52 ENAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 52 ~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
...||+|+|.||.|......+-..+.+++++ ..++||..||-|-++|..+
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 3689999998887765442222234555555 3599999999999888764
No 123
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=94.76 E-value=0.0086 Score=52.73 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=40.4
Q ss_pred CHHHHHhhhcccCCcCEEEECCCCCCCCCCC-chhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 41 TWRDICRYLYEENAFDNIVISPGPGSPACPE-DIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 41 ~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+++++.. ..||+|||.||.+.+.... +-..+.+++++ ..++||.+||-|-.+|+.+
T Consensus 29 ~l~~~~~-----~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 29 TLDEIDP-----SDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp EGGGHTG-----GGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred cHHHCCh-----hhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 3677765 6799999988888655433 43445666666 3599999999999988886
No 124
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=94.70 E-value=0.043 Score=57.52 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=46.4
Q ss_pred cEEEEEECC-CC--chHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-ch---hHHH
Q 046651 5 VRTLLIDNY-DS--YTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DI---GICL 77 (392)
Q Consensus 5 ~r~LlIDny-DS--yT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~---gi~~ 77 (392)
+||.|.-.. =+ |..|| ++|++ + ++++.+.. ..-+++ .++|+|+|.||- |.... +. +..
T Consensus 234 ~~iavA~D~AF~FyY~enl-~~L~~-~-aelv~fSP--l~~~~l-------p~~D~l~lpGG~--~e~~~~~L~~n~~~- 298 (433)
T PRK13896 234 PTVAVARDAAFCFRYPATI-ERLRE-R-ADVVTFSP--VAGDPL-------PDCDGVYLPGGY--PELHADALADSPAL- 298 (433)
T ss_pred CeEEEEEcCccceeCHHHH-HHHHh-c-CcEEEEcC--CCCCCC-------CCCCEEEeCCCc--hhhHHHHHHhCCcH-
Confidence 466665321 12 34454 55666 4 66655433 211222 358999996655 33211 11 112
Q ss_pred HHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 78 RVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 78 ~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
+-|++ ..+.||+|+|-|+|+|+...
T Consensus 299 ~~i~~~~~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 299 DELADRAADGLPVLGECGGLMALAESL 325 (433)
T ss_pred HHHHHHHHCCCcEEEEehHHHHhhccc
Confidence 33333 24899999999999999975
No 125
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=94.63 E-value=0.11 Score=49.92 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=35.4
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+||+|+|.||.|...+..+-....+++++ ..++||-.||-|-++|..+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 579999998887766543332334556655 3589999999999887764
No 126
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=94.17 E-value=0.21 Score=45.45 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=35.8
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
.+||.|+|.||...+.......-..+++++ ..++||..||-|-++|+.+-
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 479999998884444332221445566665 35999999999999999873
No 127
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=93.57 E-value=0.1 Score=49.51 Aligned_cols=49 Identities=29% Similarity=0.220 Sum_probs=35.4
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||+|+|.||++......+-....++|++ ..+++|.+||-|-++|+.+
T Consensus 89 ~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 89 SDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred hHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 479999998887654433222335566655 3589999999999999986
No 128
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=93.38 E-value=0.11 Score=50.06 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=55.6
Q ss_pred ccEEEEEEC------CCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhH
Q 046651 4 FVRTLLIDN------YDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGI 75 (392)
Q Consensus 4 ~~r~LlIDn------yDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi 75 (392)
..|+++|-. ++.|.....+.++. .|++++.++.. ++....| ...|+|+|+||--.-.. ..+.++
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~-lG~~v~~l~~~----~d~~~~l---~~ad~I~v~GGnt~~l~~~l~~~gl 102 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAP-LGIEVTGIHRV----ADPVAAI---ENAEAIFVGGGNTFQLLKQLYERGL 102 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHH-CCCEEEEeccc----hhhHHHH---hcCCEEEECCccHHHHHHHHHHCCc
Confidence 467888844 33466667788877 79998777543 3333334 57999999877422110 111221
Q ss_pred HHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 76 CLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 76 ~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
.+.|++ ..++|++|+|-|.-+++...
T Consensus 103 -~~~l~~~~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 103 -LAPIREAVKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred -HHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence 233333 24899999999987766543
No 129
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.68 E-value=0.62 Score=41.83 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=33.7
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+||.|||.||+. +....+ ....++|++ .++.+|.+||-|-++|+.+
T Consensus 59 ~~~D~l~I~Gg~~-~~~~~~-~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDS-WDNPEA-PDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcc-cccCCc-HHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 3699999988764 222222 234566665 3589999999999999986
No 130
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.65 E-value=0.22 Score=45.40 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=34.4
Q ss_pred CCcCEEEECCCCCCCC--CCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPA--CPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~--~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+||.|||.||++... ...+-....++|++ ..+.+|.+||-|-.+|+.+
T Consensus 68 ~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 68 PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 5799999977765532 12222334566655 3589999999999999985
No 131
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=92.39 E-value=0.15 Score=45.62 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=34.0
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||++.+....+-....++|++ ..+.+|.+||-|-.+|+.+
T Consensus 62 ~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 62 EEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred ccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 569999997665322221222335566665 3589999999999999986
No 132
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=91.65 E-value=0.59 Score=43.64 Aligned_cols=92 Identities=20% Similarity=0.141 Sum_probs=57.3
Q ss_pred ccEEEEEECCC----CchHHHHHHHHHhCCCCeEEEeCC-CCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----Cchh
Q 046651 4 FVRTLLIDNYD----SYTYNIYQELSTINGVPPVVVRND-EWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIG 74 (392)
Q Consensus 4 ~~r~LlIDnyD----SyT~nl~q~L~~v~G~~pvVV~nd-~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~g 74 (392)
..|+++|..-. .|.....+.+.+ .|++.+.+..- ..+-+++...| ...|+|+|+|| ++... .+.+
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~-lG~~~~~~~~~~~~~~~~~~~~l---~~ad~I~~~GG--~~~~~~~~l~~t~ 102 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFER-LGVEVVHLLLIDTANDPDVVARL---LEADGIFVGGG--NQLRLLSVLRETP 102 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHH-cCCceEEEeccCCCCCHHHHHHH---hhCCEEEEcCC--cHHHHHHHHHhCC
Confidence 46888986543 455566777777 69887765442 12234455555 68999999775 33221 1112
Q ss_pred HHHHHHHH-cCCCCEEEEcHHHHHHHHH
Q 046651 75 ICLRVLLE-CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 75 i~~~ll~~-~~~iPILGVCLGhQ~La~a 101 (392)
....++.. .++.|+.|+|-|..+++..
T Consensus 103 ~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 103 LLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred hHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 22223322 2589999999999999885
No 133
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=90.86 E-value=0.56 Score=42.35 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=34.0
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.+......+ .-..++|++ ..+.+|.+||-|-++|+.+
T Consensus 63 ~~~D~liipGg~~~~~~~~~-~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 63 AAADTVIVPGGPDVDGRPPP-PALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCCEEEECCCcccccccCC-HHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 57999999877654322223 224555555 3589999999999999986
No 134
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=89.66 E-value=1.9 Score=39.50 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=45.7
Q ss_pred cEEEEEEC-CCCchHHHHHHHHHhCC--CCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-ch-hHHHHH
Q 046651 5 VRTLLIDN-YDSYTYNIYQELSTING--VPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DI-GICLRV 79 (392)
Q Consensus 5 ~r~LlIDn-yDSyT~nl~q~L~~v~G--~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~-gi~~~l 79 (392)
|++|||=. ....|.-+++.|++.++ .++.++...+....++ ..||.||| |+|-.-.... .+ .++.+.
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~~~l-------~~yD~vIl-Gspi~~G~~~~~~~~fl~~~ 72 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKEGIQCDVVNLHRIEEPDL-------SDYDRVVI-GASIRYGHFHSALYKFVKKH 72 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCCCCeEEEEEhhhcCccCH-------HHCCEEEE-ECccccCCcCHHHHHHHHHH
Confidence 78877743 34568889999988764 3566665554322233 45999999 3331111111 11 222222
Q ss_pred HHHcCCCCEEEEcHH
Q 046651 80 LLECWDVPILGVCLG 94 (392)
Q Consensus 80 l~~~~~iPILGVCLG 94 (392)
.....++|+.-+|.|
T Consensus 73 ~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 73 ATQLNQMPSAFFSVN 87 (177)
T ss_pred HHHhCCCeEEEEEec
Confidence 233357887777766
No 135
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=87.72 E-value=0.34 Score=46.77 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=40.9
Q ss_pred HHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHHHH--cCCCCEEEEcHHHHHH
Q 046651 23 ELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVLLE--CWDVPILGVCLGHQAL 98 (392)
Q Consensus 23 ~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll~~--~~~iPILGVCLGhQ~L 98 (392)
.-++..|+.+.|+.-+.- +.+.. ..+|-+++.||--.-.. .+|..-...-|++ ..++|+|.||-|.|+|
T Consensus 28 ~ra~~rgi~v~i~~vsl~--d~~~~-----~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlL 100 (250)
T COG3442 28 QRAEKRGIKVEIVEVSLT--DTFPD-----DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLL 100 (250)
T ss_pred HHHHhcCCceEEEEeecC--CCCCc-----ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhc
Confidence 334446888877654432 12221 46899999655422111 1121111122332 2499999999999999
Q ss_pred HHH
Q 046651 99 GFV 101 (392)
Q Consensus 99 a~a 101 (392)
++.
T Consensus 101 G~y 103 (250)
T COG3442 101 GQY 103 (250)
T ss_pred cce
Confidence 986
No 136
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=87.52 E-value=1.2 Score=40.31 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=33.6
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+||.|||.||++.. ..+-....++|++ ..+..|.+||-|-.+|+.+
T Consensus 63 ~~~D~liipgg~~~~--~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 63 PPLDYLFVVGGLGAR--RAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCCEEEEeCCCCcc--ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 579999997776543 2222334555655 2589999999999999985
No 137
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=87.17 E-value=1.2 Score=39.84 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=34.4
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||++... ...-....++|++ ....+|.++|-|--+|+.+
T Consensus 61 ~~~D~lvipgg~~~~~-~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 61 PDLDVLLVPGGGGTRA-LVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCCEEEECCCcchhh-hccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 4799999987765322 2222345667766 3588999999999998885
No 138
>PRK11249 katE hydroperoxidase II; Provisional
Probab=86.54 E-value=1.2 Score=49.97 Aligned_cols=97 Identities=18% Similarity=0.087 Sum_probs=56.4
Q ss_pred ccEEEEEECCCCch---HHHHHHHHHhCCCCeEEEeCCCCCHH-------HHHhhhcc--cCCcCEEEECCCCCCCCCCC
Q 046651 4 FVRTLLIDNYDSYT---YNIYQELSTINGVPPVVVRNDEWTWR-------DICRYLYE--ENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 4 ~~r~LlIDnyDSyT---~nl~q~L~~v~G~~pvVV~nd~~~~e-------el~~~l~e--~~~fDgIVISpGPGsp~~~~ 71 (392)
.+||+||-..+... ..+.+.|.. .|+.+.+|....-... .+...+-+ ...||+|||.+|+..+....
T Consensus 597 gRKIaILVaDG~d~~ev~~~~daL~~-AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~ 675 (752)
T PRK11249 597 GRKVAILLNDGVDAADLLAILKALKA-KGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLA 675 (752)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHHH-CCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHh
Confidence 36776664422222 245566665 6888877754321000 01111101 12599999977765554333
Q ss_pred chhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 72 DIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 72 d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+-+-...+|++ ...++|..||-|-++|+.+
T Consensus 676 ~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 676 DNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred hCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 33445666666 3588999999999999974
No 139
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=86.33 E-value=0.64 Score=41.31 Aligned_cols=48 Identities=29% Similarity=0.404 Sum_probs=32.9
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..+|.|||.||++......+ ....+.|++ ..+.+|.++|-|-.+|+.+
T Consensus 60 ~~~D~lvvpg~~~~~~~~~~-~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 60 PDFDILVVPGGPGFDAAAKD-PALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp SCCSEEEEE-STTHHHHTT--HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred ccCCEEEeCCCCCchhcccC-HHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 67999999888771111222 234455544 3589999999999999997
No 140
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=83.57 E-value=6.4 Score=36.75 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=67.4
Q ss_pred EEEEEECC------CCc--hHH-HHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHH
Q 046651 6 RTLLIDNY------DSY--TYN-IYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGIC 76 (392)
Q Consensus 6 r~LlIDny------DSy--T~n-l~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~ 76 (392)
|||||.-. +++ ... |.+++++-.|+++++..+ ...+.+ ..| ..||.||+.-..+..-..+....+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~-~~~~~~--~~L---~~~Dvvv~~~~~~~~l~~~~~~al 74 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTED-PDDLTP--ENL---KGYDVVVFYNTGGDELTDEQRAAL 74 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCS-GGCTSH--HCH---CT-SEEEEE-SSCCGS-HHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeC-cccCCh--hHh---cCCCEEEEECCCCCcCCHHHHHHH
Confidence 68888654 111 112 334444345666654433 222222 112 689999997665432111112222
Q ss_pred HHHHHHcCCCCEEEEcHHH-------HHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEE--eeecc
Q 046651 77 LRVLLECWDVPILGVCLGH-------QALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVV--RYHSL 147 (392)
Q Consensus 77 ~~ll~~~~~iPILGVCLGh-------Q~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~Vv--ryHSl 147 (392)
.+.++ ++.+++|+.-+. .......||....-|....... .+...++++.+++|.. |.+. .|...
T Consensus 75 ~~~v~--~Ggglv~lH~~~~~~~~~~~~~~~l~Gg~f~~h~~~~~~~v-~~~~~~HPi~~gl~~~----f~~~DE~Y~~~ 147 (217)
T PF06283_consen 75 RDYVE--NGGGLVGLHGAATDSFPDWPEYNELLGGYFKGHPPPQPFTV-RVEDPDHPITRGLPES----FTIYDEWYYFL 147 (217)
T ss_dssp HHHHH--TT-EEEEEGGGGGCCHTT-HHHHHHHS--SEEEECEEEEEE-EESSTTSCCCTTS-SE----EEEEEEEEES-
T ss_pred HHHHH--cCCCEEEEcccccccchhHHHHHHeeCccccCCCCCceEEE-EEcCCCChhhcCCCCC----ceEcccccccc
Confidence 33333 489999998332 2345567775544331111111 1334679999999877 7774 23322
Q ss_pred eeecCCCCCCcEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSN 165 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~ 165 (392)
. . ..+...+|+...
T Consensus 148 ~-~---~~~~~~vL~~~~ 161 (217)
T PF06283_consen 148 R-D---PRPNVTVLLTAD 161 (217)
T ss_dssp B-S------CEEEEEEEE
T ss_pred c-C---CCCCEEEEEEEE
Confidence 2 1 223578888776
No 141
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=82.99 E-value=1.9 Score=37.48 Aligned_cols=83 Identities=18% Similarity=0.291 Sum_probs=51.6
Q ss_pred cEEEEEECC---CCchHHHHHHHHHhC---CCCeEEEeCCCC-----------------CHHHHHhhhcccCCcCEEEEC
Q 046651 5 VRTLLIDNY---DSYTYNIYQELSTIN---GVPPVVVRNDEW-----------------TWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 5 ~r~LlIDny---DSyT~nl~q~L~~v~---G~~pvVV~nd~~-----------------~~eel~~~l~e~~~fDgIVIS 61 (392)
||||+|.-- +|.|..+.+++.+.. |+++.++.-.+. .++++...| .+.|+||+
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l---~~aD~iI~- 76 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKL---KEADGIIF- 76 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHH---HHSSEEEE-
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhce---ecCCeEEE-
Confidence 899999653 478888888887764 888888866552 123444444 57899999
Q ss_pred CCCCCCCCCCc----hhHHHHHHH-----HcCCCCEEEEcHH
Q 046651 62 PGPGSPACPED----IGICLRVLL-----ECWDVPILGVCLG 94 (392)
Q Consensus 62 pGPGsp~~~~d----~gi~~~ll~-----~~~~iPILGVCLG 94 (392)
++|.-... .....+.+. ...++|++.|+-|
T Consensus 77 ---~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 77 ---ASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp ---EEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred ---eecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 56643222 222223332 1358898888643
No 142
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.94 E-value=2.5 Score=37.87 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=35.9
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~iPILGVCLGhQ~La~a 101 (392)
...|.||+-||=.-|.-..+..-..+++.+.+..|+.|||+ |.|.+-
T Consensus 84 n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCf--m~mF~r 130 (154)
T COG4090 84 NSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCF--MNMFER 130 (154)
T ss_pred ccccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEeeH--HHHHHH
Confidence 45899999999888876556655678888877789999994 555544
No 143
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=82.67 E-value=3.3 Score=42.79 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=49.9
Q ss_pred cEEEEEECCCCchH---HHHHHHHHhCCCCeEEEeCCCCCHHHHHh--hhcccCCcCEEEECCCCCCCCCCCchhHHHHH
Q 046651 5 VRTLLIDNYDSYTY---NIYQELSTINGVPPVVVRNDEWTWRDICR--YLYEENAFDNIVISPGPGSPACPEDIGICLRV 79 (392)
Q Consensus 5 ~r~LlIDnyDSyT~---nl~q~L~~v~G~~pvVV~nd~~~~eel~~--~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~l 79 (392)
|+|||..--..-+. .....|++.+.-...|..-+. ++|.. |. ..++.+|+.||...|++..--+.-.+.
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~---~~l~~~pw~---~~~~LlV~PGG~d~~y~~~l~~~g~~~ 74 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTA---DELLNEPWQ---SKCALLVMPGGADLPYCRSLNGEGNRR 74 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCH---HHhhcCccc---cCCcEEEECCCcchHHHHhhChHHHHH
Confidence 78888865544443 344555554443344443332 33322 22 568999998888888773322222344
Q ss_pred HHH--cCCCCEEEEcHHHH
Q 046651 80 LLE--CWDVPILGVCLGHQ 96 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ 96 (392)
|++ ..+--.||||.|.-
T Consensus 75 Ir~fV~~GG~YlGiCAGaY 93 (367)
T PF09825_consen 75 IRQFVENGGGYLGICAGAY 93 (367)
T ss_pred HHHHHHcCCcEEEECcchh
Confidence 444 24888999999944
No 144
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=82.27 E-value=1.7 Score=36.87 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=47.7
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWD 85 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~ 85 (392)
||||||+-..-..+|--.|.. .|..++++..+++ ..... ....++++|.-|... .-......++.....
T Consensus 1 kILvIddd~~R~~~L~~ILeF-lGe~~~~~~~~~~--~~~~~----~~~~~~~~v~~g~~~----~~~~~l~~l~~~~~~ 69 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEF-LGEQCEAVSSSDW--SQADW----SSPWEACAVILGSCS----KLAELLKELLKWAPH 69 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhh-cCCCeEEecHHHH--HHhhh----hcCCcEEEEEecCch----hHHHHHHHHHhhCCC
Confidence 699999855555666666665 7999999987664 22211 156788877655443 222334555555678
Q ss_pred CCEEEE
Q 046651 86 VPILGV 91 (392)
Q Consensus 86 iPILGV 91 (392)
+|+|=+
T Consensus 70 ~Pvlll 75 (109)
T PF06490_consen 70 IPVLLL 75 (109)
T ss_pred CCEEEE
Confidence 998744
No 145
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.90 E-value=3.5 Score=41.16 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=44.9
Q ss_pred cEEEEEECCCC-ch----HHHHHHHHHhCCCCeEEEeCCCCCHH-------------HHHhhhcccCCcCEEEECCCCCC
Q 046651 5 VRTLLIDNYDS-YT----YNIYQELSTINGVPPVVVRNDEWTWR-------------DICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 5 ~r~LlIDnyDS-yT----~nl~q~L~~v~G~~pvVV~nd~~~~e-------------el~~~l~e~~~fDgIVISpGPGs 66 (392)
|+++||-|.+. -. ..|...|.+ .|..+.+-........ +... + ...+|.||.-||-|+
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~dlvi~lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEE-L--DGSADMVISIGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhccccccccccccccchhh-c--ccCCCEEEEECCcHH
Confidence 89999988644 22 334455544 5777755332100000 0011 1 035799999999886
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHH
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGh 95 (392)
. ++..+. ..++|||||=+|.
T Consensus 77 ~---------L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 77 F---------LRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred H---------HHHHHHhcCCCCCEEEEecCC
Confidence 3 334433 2389999999986
No 146
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=81.50 E-value=13 Score=35.96 Aligned_cols=94 Identities=21% Similarity=0.343 Sum_probs=57.0
Q ss_pred cEEEEEECCC--CchHHHHHHHHHhCCCCeEEEeCCC----C-CH----H------HHHhhhc--ccCCcCEEEECCCCC
Q 046651 5 VRTLLIDNYD--SYTYNIYQELSTINGVPPVVVRNDE----W-TW----R------DICRYLY--EENAFDNIVISPGPG 65 (392)
Q Consensus 5 ~r~LlIDnyD--SyT~nl~q~L~~v~G~~pvVV~nd~----~-~~----e------el~~~l~--e~~~fDgIVISpGPG 65 (392)
|+||+|.-.. +.|..+...+..+.+..+.++.... + .. + .+...+- ++..+|+|||+
T Consensus 1 ~~IlvINPNsT~smTe~~~~~a~~v~~~~~~l~~~t~~~~~p~~Ieg~~de~~a~~~~l~ei~~~~~~GvdaiiIa---- 76 (230)
T COG4126 1 MRILVINPNSTASMTESMGETARKVASADTELISVTSPRDGPASIEGQEDEALAAPGLLREIADGEEQGVDAIIIA---- 76 (230)
T ss_pred CeEEEECCCchHHHHHHHHHHHHhhcCCCceEEEEccCCCCCccccCcchHHHhhhHHHHHhhcccccCCcEEEEE----
Confidence 6888886543 3566777777666655554432211 0 00 1 1111111 33459999995
Q ss_pred CCCCCCchhHHHHHHHHcCCCCEEEEcHHHHHHHHHhCCeee
Q 046651 66 SPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIV 107 (392)
Q Consensus 66 sp~~~~d~gi~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~ 107 (392)
|..|.+ ...+++.-.+|+.|||----..|...|-++.
T Consensus 77 ---Cf~DPg--l~~~Re~~~~PviGi~eAsv~~A~~vgrrfs 113 (230)
T COG4126 77 ---CFSDPG--LAAARERAAIPVIGICEASVLAALFVGRRFS 113 (230)
T ss_pred ---ecCChH--HHHHHHHhCCCceehhHHHHHHHHHhcceEE
Confidence 556643 5667774499999999998888887766553
No 147
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.74 E-value=4.4 Score=40.09 Aligned_cols=81 Identities=26% Similarity=0.340 Sum_probs=46.3
Q ss_pred cEEEEEECCCC-chHH----HHHHHHHhCCCCeEEEeCCCCCHHHHH--hh-hcccCCcCEEEECCCCCCCCCCCchhHH
Q 046651 5 VRTLLIDNYDS-YTYN----IYQELSTINGVPPVVVRNDEWTWRDIC--RY-LYEENAFDNIVISPGPGSPACPEDIGIC 76 (392)
Q Consensus 5 ~r~LlIDnyDS-yT~n----l~q~L~~v~G~~pvVV~nd~~~~eel~--~~-l~e~~~fDgIVISpGPGsp~~~~d~gi~ 76 (392)
||++|+-|.+. .... |.+.|.. .|.++.+............ .. -.++..+|.||.-||-|+.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTl--------- 70 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTI--------- 70 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHH---------
Confidence 89999988654 3333 4444444 5777766532211011000 00 0011368999999998874
Q ss_pred HHHHHH-cCCCCEEEEcHHH
Q 046651 77 LRVLLE-CWDVPILGVCLGH 95 (392)
Q Consensus 77 ~~ll~~-~~~iPILGVCLGh 95 (392)
++.++. ..++||+||=.|.
T Consensus 71 L~a~~~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 71 LRIEHKTKKDIPILGINMGT 90 (277)
T ss_pred HHHHHhcCCCCeEEEEeCCC
Confidence 222322 2389999999986
No 148
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=77.80 E-value=5.2 Score=31.93 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=48.4
Q ss_pred EEEEECCCCchHHHHHHHHHhCCC-CeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCC
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGV-PPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWD 85 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~-~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~ 85 (392)
|||||+.......+-..|.. .|. .+..+.+ .+++...+ +...||-|++. ..........++..+-....+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~-~~~~~v~~~~~----~~~~~~~~-~~~~~d~iiid---~~~~~~~~~~~~~~i~~~~~~ 71 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLER-AGYEEVTTASS----GEEALELL-KKHPPDLIIID---LELPDGDGLELLEQIRQINPS 71 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTEEEEEEESS----HHHHHHHH-HHSTESEEEEE---SSSSSSBHHHHHHHHHHHTTT
T ss_pred cEEEECCHHHHHHHHHHHHh-CCCCEEEEECC----HHHHHHHh-cccCceEEEEE---eeecccccccccccccccccc
Confidence 68999877777777788874 787 5544432 34555444 33679999994 222223344545454333568
Q ss_pred CCEEEEc
Q 046651 86 VPILGVC 92 (392)
Q Consensus 86 iPILGVC 92 (392)
+|++.++
T Consensus 72 ~~ii~~t 78 (112)
T PF00072_consen 72 IPIIVVT 78 (112)
T ss_dssp SEEEEEE
T ss_pred ccEEEec
Confidence 9999988
No 149
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.98 E-value=6.7 Score=39.45 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=45.0
Q ss_pred cEEEEEECCCCc-----hHHHHHHHHHhCCCCeEEEeCCCCCHH----HH---------H--hhhcccCCcCEEEECCCC
Q 046651 5 VRTLLIDNYDSY-----TYNIYQELSTINGVPPVVVRNDEWTWR----DI---------C--RYLYEENAFDNIVISPGP 64 (392)
Q Consensus 5 ~r~LlIDnyDSy-----T~nl~q~L~~v~G~~pvVV~nd~~~~e----el---------~--~~l~e~~~fDgIVISpGP 64 (392)
++++||-|.+.- ...|...|.. .|.++.+......... .. . ..+ ...+|.||.-||-
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~vi~lGGD 82 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA--ADGCELVLVLGGD 82 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEeechhhhhcccccccccccccccccchhhc--ccCCCEEEEEcCC
Confidence 349999886542 2345555554 6877766442211000 00 0 000 1357899998998
Q ss_pred CCCCCCCchhHHHHHHHH--cCCCCEEEEcHHH
Q 046651 65 GSPACPEDIGICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 65 Gsp~~~~d~gi~~~ll~~--~~~iPILGVCLGh 95 (392)
|+. ++..+. ..++|||||=+|+
T Consensus 83 GT~---------L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 83 GTI---------LRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred HHH---------HHHHHHhccCCCcEEEEecCC
Confidence 863 333333 3489999999985
No 150
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=76.19 E-value=8.9 Score=34.53 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=44.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
||+||||........+...|.. .|..+..+.+ .++....+ ....+|.||+--. -|. ...+..+.++-....
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~-~g~~v~~~~~----~~~~l~~~-~~~~~dlvild~~--l~~-~~g~~l~~~lr~~~~ 71 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQD-AGHQVDAAED----AKEADYYL-NEHLPDIAIVDLG--LPD-EDGLSLIRRWRSNDV 71 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHH-hhCCCCEEEEECC--CCC-CCHHHHHHHHHhcCC
Confidence 7999999866666677777776 6776554432 23333222 2357999988321 221 112333333322234
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
++|++-+.
T Consensus 72 ~~pii~ls 79 (223)
T PRK10816 72 SLPILVLT 79 (223)
T ss_pred CCCEEEEE
Confidence 78988775
No 151
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=75.16 E-value=6.1 Score=39.09 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=32.2
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||++. ....+ ....++|++ ..+.+|.|||-|--+|+.+
T Consensus 74 ~~~D~livpGg~~~-~~~~~-~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 74 DRADTIVIPGWRGP-DAPVP-EPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred CCCCEEEECCCCcc-cccCC-HHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 57999999666543 22222 234556655 3478999999999998886
No 152
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.01 E-value=4.9 Score=39.56 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=45.6
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
||.-+|.+.++-...+...|+...+.. . +.+ ..+|.||.-||-|+. ++.++.
T Consensus 1 ~~~~i~~~~~~~s~~~~~~l~~~~~~~-------~--~~~--------~~~D~vi~iGGDGT~---------L~a~~~~~ 54 (259)
T PRK00561 1 MKYKIFASTTPQTEPVLPKLKKVLKKK-------L--AVE--------DGADYLFVLGGDGFF---------VSTAANYN 54 (259)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHhhC-------C--Ccc--------CCCCEEEEECCcHHH---------HHHHHHhc
Confidence 788999998777777888887764421 1 111 458999988998863 444443
Q ss_pred cCCCCEEEEcHHH
Q 046651 83 CWDVPILGVCLGH 95 (392)
Q Consensus 83 ~~~iPILGVCLGh 95 (392)
..++|||||=+|+
T Consensus 55 ~~~iPilGIN~G~ 67 (259)
T PRK00561 55 CAGCKVVGINTGH 67 (259)
T ss_pred CCCCcEEEEecCC
Confidence 2489999999885
No 153
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.08 E-value=11 Score=37.72 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=45.0
Q ss_pred ccEEEEEECCCCc-h----HHHHHHHHHhCCCCeEEEeCCCC---CH---------HHHHhhhcccCCcCEEEECCCCCC
Q 046651 4 FVRTLLIDNYDSY-T----YNIYQELSTINGVPPVVVRNDEW---TW---------RDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 4 ~~r~LlIDnyDSy-T----~nl~q~L~~v~G~~pvVV~nd~~---~~---------eel~~~l~e~~~fDgIVISpGPGs 66 (392)
.+|++||-|.+.- . ..|...|.+ .|..+.+-..... .+ .+... + ...+|.||.-||-|+
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~D~vi~lGGDGT 80 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTE-L--GQYCDLVAVLGGDGT 80 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecccccccchhccccccccccchhh-c--CcCCCEEEEECCcHH
Confidence 3459999886552 2 234455554 6877765432110 00 00001 1 025799999899886
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHH
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGh 95 (392)
. ++..+. ..++|||||=+|+
T Consensus 81 ~---------L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 81 F---------LSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred H---------HHHHHHhcccCCCEEEEecCC
Confidence 3 333333 2489999999986
No 154
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=72.26 E-value=13 Score=33.59 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=42.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
||+||||+.......+...|+. .|..+....+. ++....+ ....+|.||+--. -|. ...+.++ +.+++ .
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~-~g~~v~~~~~~----~~~~~~~-~~~~~dlvild~~--~~~-~~g~~~~-~~lr~~~ 70 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTE-AGFVVDLADNG----LNGYHLA-MTGDYDLIILDIM--LPD-VNGWDIV-RMLRSAN 70 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-CCCEEEEECCH----HHHHHHH-hhCCCCEEEEECC--CCC-CCHHHHH-HHHHhcC
Confidence 7999999876666677777765 67754433221 2222222 2256999998321 111 1122333 33333 3
Q ss_pred CCCCEEEE
Q 046651 84 WDVPILGV 91 (392)
Q Consensus 84 ~~iPILGV 91 (392)
.++|++-+
T Consensus 71 ~~~pii~l 78 (227)
T PRK09836 71 KGMPILLL 78 (227)
T ss_pred CCCCEEEE
Confidence 47888765
No 155
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=72.05 E-value=11 Score=36.88 Aligned_cols=73 Identities=16% Similarity=0.298 Sum_probs=46.7
Q ss_pred HHHHHHhCCCCeEEEeCCCC---------------CHHHHHhhhcccCCcCEEEECCC-CCCCCCCCchhHHHHHHHH--
Q 046651 21 YQELSTINGVPPVVVRNDEW---------------TWRDICRYLYEENAFDNIVISPG-PGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 21 ~q~L~~v~G~~pvVV~nd~~---------------~~eel~~~l~e~~~fDgIVISpG-PGsp~~~~d~gi~~~ll~~-- 82 (392)
++.|++ .|+.++++..+.- ...|... ..||.|||.|| ||.-.- ++-..+.+++.+
T Consensus 25 ~dVLrr-~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~-----~~yDviilPGG~~g~e~L-~~~~~v~~lvK~q~ 97 (247)
T KOG2764|consen 25 IDVLRR-GGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVD-----SKYDVIILPGGLPGAETL-SECEKVVDLVKEQA 97 (247)
T ss_pred HHHHHh-cCceEEEecCCCCcccccccceEecccccchhhcc-----ccccEEEecCCchhhhhh-hhcHHHHHHHHHHH
Confidence 567777 6888877752221 1223222 68999999888 765432 333456677776
Q ss_pred cCCCCEEEEcHHHHHHHHH
Q 046651 83 CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a 101 (392)
..+.+|..||-| |+++.+
T Consensus 98 ~~gkLIaaICaa-p~~al~ 115 (247)
T KOG2764|consen 98 ESGKLIAAICAA-PLTALA 115 (247)
T ss_pred hcCCeEEEeecc-hHHHHh
Confidence 359999999998 444443
No 156
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=72.01 E-value=13 Score=32.91 Aligned_cols=78 Identities=21% Similarity=0.144 Sum_probs=44.0
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
|++||||........+...|.. .|..+..+.+ .++....+ +...+|.||+...- |. ......+. .++. .
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~----~~~~~~~~-~~~~~dlvild~~l--~~-~~g~~~~~-~i~~~~ 70 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSK-MGFSVDWFTQ----GRQGKEAL-YSAPYDAVILDLTL--PG-MDGRDILR-EWREKG 70 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHH-CCCEEEEeCC----HHHHHHHH-hhCCCCEEEEECCC--CC-CCHHHHHH-HHHhcC
Confidence 7899999866666677788876 5766544322 22332222 22568999884221 11 12233333 3333 3
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
..+|++-+.
T Consensus 71 ~~~~ii~lt 79 (219)
T PRK10336 71 QREPVLILT 79 (219)
T ss_pred CCCcEEEEE
Confidence 478888775
No 157
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=71.47 E-value=12 Score=37.30 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=45.0
Q ss_pred cEEEEEECCCCc-----hHHHHHHHHHhCCCCeEEEeCCCCCHH-------HHHhhhcccCCcCEEEECCCCCCCCCCCc
Q 046651 5 VRTLLIDNYDSY-----TYNIYQELSTINGVPPVVVRNDEWTWR-------DICRYLYEENAFDNIVISPGPGSPACPED 72 (392)
Q Consensus 5 ~r~LlIDnyDSy-----T~nl~q~L~~v~G~~pvVV~nd~~~~e-------el~~~l~e~~~fDgIVISpGPGsp~~~~d 72 (392)
++++||-|.+.- ...|.+.|+. .|+++.+.......+. .... + ...+|.||.-||-|+.
T Consensus 6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~-~g~~v~v~~~~~~~~~~~~~~~~~~~~-~--~~~~d~vi~~GGDGt~----- 76 (291)
T PRK02155 6 KTVALIGRYQTPGIAEPLESLAAFLAK-RGFEVVFEADTARNIGLTGYPALTPEE-I--GARADLAVVLGGDGTM----- 76 (291)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcccccccChhH-h--ccCCCEEEEECCcHHH-----
Confidence 448999887653 2234455554 5777655432110000 0011 0 1358999999998863
Q ss_pred hhHHHHHHHH--cCCCCEEEEcHHH
Q 046651 73 IGICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 73 ~gi~~~ll~~--~~~iPILGVCLGh 95 (392)
++.++. ..++|+|||=.|+
T Consensus 77 ----l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 77 ----LGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred ----HHHHHHhcCCCCCEEEEcCCC
Confidence 344443 2489999999987
No 158
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.29 E-value=10 Score=36.93 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=42.8
Q ss_pred cEEEEEECCCCch--HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 5 VRTLLIDNYDSYT--YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT--~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
||+.++...++-. ..+...+.+ .|..+......+ . .....|.||.-||-|+ .++.++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~-------~---~~~~~d~vi~iGGDGT---------~L~a~~~ 60 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISK-EHEVVEFCEASA-------S---GKVTADLIIVVGGDGT---------VLKAAKK 60 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHH-cCCeeEeecccc-------c---ccCCCCEEEEECCcHH---------HHHHHHH
Confidence 8888996554321 223344444 566554332211 1 1145799999899886 3555555
Q ss_pred cCCCCEEEEcHHH
Q 046651 83 CWDVPILGVCLGH 95 (392)
Q Consensus 83 ~~~iPILGVCLGh 95 (392)
. ++|||||=.|+
T Consensus 61 ~-~~Pilgin~G~ 72 (256)
T PRK14075 61 V-GTPLVGFKAGR 72 (256)
T ss_pred c-CCCEEEEeCCC
Confidence 6 99999999886
No 159
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=67.63 E-value=15 Score=34.57 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=47.7
Q ss_pred CccEEEEE---E------CCCCchHHHHHHHHHhCCCCe-----EEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCC
Q 046651 3 EFVRTLLI---D------NYDSYTYNIYQELSTINGVPP-----VVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPA 68 (392)
Q Consensus 3 ~~~r~LlI---D------nyDSyT~nl~q~L~~v~G~~p-----vVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~ 68 (392)
..||+.|| | .+|+..+-|...|.+ .|... .+|+.|.....+....+.+...+|.||++||-|--
T Consensus 2 ~~~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~-~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g- 79 (193)
T PRK09417 2 DTLKIGLVSISDRASSGVYEDKGIPALEEWLAS-ALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPA- 79 (193)
T ss_pred CCcEEEEEEEcCcCCCCceeechHHHHHHHHHH-cCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCC-
Confidence 45677666 3 235566678888887 55432 24444332222222222222369999999885431
Q ss_pred CCCchhHHHHHHHHcCCCCEEEEcHHHHHHH
Q 046651 69 CPEDIGICLRVLLECWDVPILGVCLGHQALG 99 (392)
Q Consensus 69 ~~~d~gi~~~ll~~~~~iPILGVCLGhQ~La 99 (392)
+.|+ ..+.+++..++++=|+.--+-+++
T Consensus 80 -~rDv--TpeAv~~l~~keipG~~e~~r~~s 107 (193)
T PRK09417 80 -RRDV--TPEATLAVADKEMPGFGEQMRQIS 107 (193)
T ss_pred -CCCc--HHHHHHHHhCCcCCcHHHHHHHHh
Confidence 2233 344555533556656654444443
No 160
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=67.28 E-value=9.3 Score=23.89 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=28.3
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
|++++++........+...+.. .|..+....+....+..+.. ..+|.+++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~vi~ 50 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLER-EGYEVDEATDGEEALELLKE-----EKPDLILL 50 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhh-cCcEEEEeCCHHHHHHHHHh-----cCCCEEEE
Confidence 6889999765555566666665 56664433322222222222 45788777
No 161
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=66.70 E-value=21 Score=32.68 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=51.3
Q ss_pred CCchHHHHHHHHHhCCCCeE---EEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCCCEEE
Q 046651 14 DSYTYNIYQELSTINGVPPV---VVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWDVPILG 90 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pv---VV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~iPILG 90 (392)
|++..-|.+.|.+ .|.++. +|+.|...+.+....+. ..+|.||++||-|- +. .| +..+.+.+.-+.|+.+
T Consensus 18 d~n~~~l~~~L~~-~G~~v~~~~~v~Dd~~~I~~~l~~~~--~~~dlVIttGG~G~-t~-~D--~t~ea~~~~~~~~l~~ 90 (170)
T cd00885 18 DTNAAFLAKELAE-LGIEVYRVTVVGDDEDRIAEALRRAS--ERADLVITTGGLGP-TH-DD--LTREAVAKAFGRPLVL 90 (170)
T ss_pred EhHHHHHHHHHHH-CCCEEEEEEEeCCCHHHHHHHHHHHH--hCCCEEEECCCCCC-CC-CC--hHHHHHHHHhCCCccc
Confidence 5667778888988 788764 33333322222222221 46899999988543 21 23 3455565544888888
Q ss_pred EcHHHHHHHHHhCC
Q 046651 91 VCLGHQALGFVHGA 104 (392)
Q Consensus 91 VCLGhQ~La~a~Gg 104 (392)
.=--.+.|-..+..
T Consensus 91 ~~e~~~~i~~~~~~ 104 (170)
T cd00885 91 DEEALERIEARFAR 104 (170)
T ss_pred CHHHHHHHHHHHHh
Confidence 88887777776653
No 162
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.58 E-value=14 Score=36.73 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=44.3
Q ss_pred cEEEEEECCCCchHH----HHHHHHHhCCCCeEEEeCCCC-------CHHHHHhhhcccCCcCEEEECCCCCCCCCCCch
Q 046651 5 VRTLLIDNYDSYTYN----IYQELSTINGVPPVVVRNDEW-------TWRDICRYLYEENAFDNIVISPGPGSPACPEDI 73 (392)
Q Consensus 5 ~r~LlIDnyDSyT~n----l~q~L~~v~G~~pvVV~nd~~-------~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~ 73 (392)
+|++||-|.+.-... |...|.+ .|+++.+-..... .++++. ..+|.||.-||-|+
T Consensus 11 ~~i~ii~~~~~~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~Dlvi~iGGDGT------- 76 (287)
T PRK14077 11 KKIGLVTRPNVSLDKEILKLQKILSI-YKVEILLEKESAEILDLPGYGLDELF------KISDFLISLGGDGT------- 76 (287)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhcccccchhhcc------cCCCEEEEECCCHH-------
Confidence 459999886653333 3344444 5777655332110 011111 35899998899886
Q ss_pred hHHHHHHHH--cCCCCEEEEcHHH
Q 046651 74 GICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 74 gi~~~ll~~--~~~iPILGVCLGh 95 (392)
.++..+. ..++|||||=+|+
T Consensus 77 --~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 77 --LISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred --HHHHHHHhcCCCCcEEEEeCCC
Confidence 3444443 2489999999997
No 163
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=65.61 E-value=12 Score=33.33 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=32.0
Q ss_pred CCCCchHHHHHHHHHhCCCCeEEEe--CCCCCHHHHHhhhc---ccCCcCEEEECCCCC
Q 046651 12 NYDSYTYNIYQELSTINGVPPVVVR--NDEWTWRDICRYLY---EENAFDNIVISPGPG 65 (392)
Q Consensus 12 nyDSyT~nl~q~L~~v~G~~pvVV~--nd~~~~eel~~~l~---e~~~fDgIVISpGPG 65 (392)
.+|++.+.|.+.|++ .|.+++.+. .|+ .+++...|. ++..+|.||++||-|
T Consensus 17 i~d~n~~~l~~~l~~-~G~~v~~~~~v~Dd--~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 17 AEDRSGPALVELLEE-AGHEVVAYEIVPDD--KDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred CccchHHHHHHHHHH-cCCeeeeEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 367888889998988 798765432 233 343433322 112699999998744
No 164
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=65.55 E-value=17 Score=32.96 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=32.5
Q ss_pred CCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcc---cCCcCEEEECCCCC
Q 046651 13 YDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYE---ENAFDNIVISPGPG 65 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e---~~~fDgIVISpGPG 65 (392)
+|+..+.|...|++ .|.+++.+..-..+.+++...|-+ ...+|.||++||-|
T Consensus 20 ~d~n~~~l~~~L~~-~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 20 DDTSGQYLVERLTE-AGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred CCCcHHHHHHHHHH-CCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 57778888898988 688775432211123444443322 24699999998854
No 165
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=65.48 E-value=19 Score=37.70 Aligned_cols=73 Identities=23% Similarity=0.145 Sum_probs=43.4
Q ss_pred CCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhccc-CCcCEEEECCCCCCCCCCCchhHHHHHHH-HcCCCCEEE
Q 046651 13 YDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEE-NAFDNIVISPGPGSPACPEDIGICLRVLL-ECWDVPILG 90 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~-~~fDgIVISpGPGsp~~~~d~gi~~~ll~-~~~~iPILG 90 (392)
|||+.|.|..+|++ +|.+++....-..+.+++...+-+. ..+|.||+|||- |.. +..+..+++. +.+++=+.|
T Consensus 201 ~dsN~~~l~a~l~~-~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~-SvG---~~D~v~~~l~~~lG~v~~~g 275 (404)
T COG0303 201 YDSNSYMLAALLER-AGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGV-SVG---DADYVKAALERELGEVLFHG 275 (404)
T ss_pred EecCHHHHHHHHHH-cCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCc-cCc---chHhHHHHHHhcCCcEEEEe
Confidence 56888889999988 7887755433222234443333211 458999999885 332 4455677777 353443333
No 166
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=64.85 E-value=58 Score=30.11 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=22.0
Q ss_pred cEEEEEECC-CCchHHHHHHHHHh----CCCCeEEEeC
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTI----NGVPPVVVRN 37 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v----~G~~pvVV~n 37 (392)
||||||-.- .+.|..+.+.+++. .|++++++.-
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 578777543 34688888877653 5777776654
No 167
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=63.85 E-value=20 Score=38.33 Aligned_cols=87 Identities=31% Similarity=0.397 Sum_probs=51.8
Q ss_pred cEEEEEECC-C------------CchHHHHHHHHHhCCCC--eEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC
Q 046651 5 VRTLLIDNY-D------------SYTYNIYQELSTINGVP--PVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC 69 (392)
Q Consensus 5 ~r~LlIDny-D------------SyT~nl~q~L~~v~G~~--pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~ 69 (392)
||++|||-| | -|..=++-+|.. .|.+ +..+.-|.. .+-...+.....||.||+=+|--.|..
T Consensus 1 m~~~IiDGY~DEPAglGVPPYi~~YpRY~aGAl~~-~g~~~~v~Y~tID~l--R~~~~~~~~l~k~d~~V~I~G~~vPGK 77 (560)
T COG1031 1 MRAAIIDGYTDEPAGLGVPPYIGPYPRYAAGALKK-AGKDVEVDYVTIDRL--RENFKTLEILNKYDLVVFIAGVTVPGK 77 (560)
T ss_pred CceeeeccccCCcccCCCCCcccccHHHHHHHHHH-cCCCceeEEEEHHHh--hccchhhhhhhcCCEEEEEeccccCcc
Confidence 899999977 2 244446777766 5544 444444432 110001111268999999888655542
Q ss_pred -----CCchhHHHHHHHHcCCCCEEE--EcHH
Q 046651 70 -----PEDIGICLRVLLECWDVPILG--VCLG 94 (392)
Q Consensus 70 -----~~d~gi~~~ll~~~~~iPILG--VCLG 94 (392)
|....-..+++....++.||| +-+|
T Consensus 78 Ylga~P~tl~E~~~i~~~~~gvkilGGP~~~~ 109 (560)
T COG1031 78 YLGATPATLEELLRILSIADGVKILGGPAALG 109 (560)
T ss_pred ccCCCCCCHHHHHHHHHHhcCcEEeccccccc
Confidence 445555667777655788888 5555
No 168
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=62.87 E-value=34 Score=33.25 Aligned_cols=93 Identities=14% Similarity=0.041 Sum_probs=52.6
Q ss_pred ccEEEEEECC----CCchHHHHHHHHHhCCCC-eEEEeCCC---CCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCch
Q 046651 4 FVRTLLIDNY----DSYTYNIYQELSTINGVP-PVVVRNDE---WTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDI 73 (392)
Q Consensus 4 ~~r~LlIDny----DSyT~nl~q~L~~v~G~~-pvVV~nd~---~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~ 73 (392)
..||++|-.- +.|.....+.++. +|+. +.++.-+. ..-+++...| ...|+|+++||--.-.. ..+.
T Consensus 28 ~~rI~~iptAS~~~~~~~~~~~~~~~~-lG~~~v~~l~i~~r~~a~~~~~~~~l---~~ad~I~~~GGnq~~l~~~l~~t 103 (250)
T TIGR02069 28 DAIIVIITSASEEPREVGERYITIFSR-LGVKEVKILDVREREDASDENAIALL---SNATGIFFTGGDQLRITSLLGDT 103 (250)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHH-cCCceeEEEecCChHHccCHHHHHHH---hhCCEEEEeCCCHHHHHHHHcCC
Confidence 4689999542 2333455566666 7884 44444321 1123444445 67999999988522110 1112
Q ss_pred hHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 74 GICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 74 gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+ ..++|++ ..+.|+.|+--|.-+++..
T Consensus 104 ~-l~~~l~~~~~~G~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 104 P-LLDRLRKRVHEGIILGGTSAGAAVMSDT 132 (250)
T ss_pred c-HHHHHHHHHHcCCeEEEccHHHHhcccc
Confidence 2 2233433 2489999999998777544
No 169
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=62.87 E-value=29 Score=30.86 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=42.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
||+|+||........+...|.. .|..+....+ .++....+ ....+|.||+... -|. ...+.. .+.+++..
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~-~~~~v~~~~~----~~~~l~~~-~~~~~dlvi~d~~--~~~-~~g~~~-~~~l~~~~ 70 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSE-AGYVIDAVSD----GRDGLYLA-LKDDYALIILDIM--LPG-MDGWQI-LQTLRTAK 70 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHH-hcCCCCEEEEECC--CCC-CCHHHH-HHHHHcCC
Confidence 7999999866666667777765 5764433322 22322222 2367999998422 121 112222 23344444
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+|++-+.
T Consensus 71 ~~~ii~ls 78 (223)
T PRK11517 71 QTPVICLT 78 (223)
T ss_pred CCCEEEEE
Confidence 78887764
No 170
>CHL00148 orf27 Ycf27; Reviewed
Probab=62.67 E-value=30 Score=31.20 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=45.5
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..|++||||........+.+.|.. .|..+....+ .++....+ ....+|.|++-..- |. ......+ +.+++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~----~~~~l~~~-~~~~~d~illd~~~--~~-~~g~~~~-~~l~~ 74 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSI-IGYEVITASD----GEEALKLF-RKEQPDLVILDVMM--PK-LDGYGVC-QEIRK 74 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHH-CCCEEEEeCC----HHHHHHHH-HhcCCCEEEEeCCC--CC-CCHHHHH-HHHHh
Confidence 468999999876666677777876 5765543322 23333322 22568999884221 11 1122222 33334
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
...+|++-++
T Consensus 75 ~~~~~ii~ls 84 (240)
T CHL00148 75 ESDVPIIMLT 84 (240)
T ss_pred cCCCcEEEEE
Confidence 3478998876
No 171
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=62.51 E-value=27 Score=30.95 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=42.0
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
||+|+||........+...|.. .|..+..+.+ .++....+ ....+|.|++-.. -|.. .....+..+.....
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~----~~~~~~~~-~~~~~d~illd~~--~~~~-~g~~~~~~l~~~~~ 71 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQT-EGYACDCAST----AREAEALL-ESGHYSLVVLDLG--LPDE-DGLHLLRRWRQKKY 71 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-CCCEEEEeCC----HHHHHHHH-HhCCCCEEEEECC--CCCC-CHHHHHHHHHhcCC
Confidence 7899999866666677777776 6766443322 22332222 2256898888422 1211 12222333322234
Q ss_pred CCCEEEE
Q 046651 85 DVPILGV 91 (392)
Q Consensus 85 ~iPILGV 91 (392)
.+|++-+
T Consensus 72 ~~pii~l 78 (222)
T PRK10643 72 TLPVLIL 78 (222)
T ss_pred CCcEEEE
Confidence 6788765
No 172
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=62.10 E-value=52 Score=30.54 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=20.9
Q ss_pred cEEEEEECC-CCchHHHHHHHHHh----CCCCeEEEeC
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTI----NGVPPVVVRN 37 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v----~G~~pvVV~n 37 (392)
||||||=.- ..+|..|++.+++- .|+++++++-
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v 38 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRV 38 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 577777432 34577788877653 2777777654
No 173
>PRK06703 flavodoxin; Provisional
Probab=61.99 E-value=38 Score=29.57 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=30.8
Q ss_pred cEEEEEEC-CCCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDN-YDSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDn-yDSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
|+++||=. .-..|..+++.|++. .|+++.++.-++....++ ..+|.|||
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l-------~~~d~vii 54 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEEL-------LAYDGIIL 54 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHH-------hcCCcEEE
Confidence 56666532 223466677777654 477777776665544444 45899999
No 174
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.83 E-value=27 Score=34.82 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=44.1
Q ss_pred cEEEEEECCCCc-hH----HHHHHHHHhCCCCeEEEeCCCCCH--H-----HHHhhhcccCCcCEEEECCCCCCCCCCCc
Q 046651 5 VRTLLIDNYDSY-TY----NIYQELSTINGVPPVVVRNDEWTW--R-----DICRYLYEENAFDNIVISPGPGSPACPED 72 (392)
Q Consensus 5 ~r~LlIDnyDSy-T~----nl~q~L~~v~G~~pvVV~nd~~~~--e-----el~~~l~e~~~fDgIVISpGPGsp~~~~d 72 (392)
++++||-|.+.- .. .|...|.. .|..+.+-....... . +... + ...+|.||.-||-|+.
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~-~--~~~~d~vi~lGGDGT~----- 76 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVEQQIAHELQLKNVKTGTLAE-I--GQQADLAIVVGGDGNM----- 76 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcccccccchhh-c--CCCCCEEEEECCcHHH-----
Confidence 459999886552 22 34444544 577765432210000 0 0011 0 1358999999998873
Q ss_pred hhHHHHHHHH--cCCCCEEEEcHHH
Q 046651 73 IGICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 73 ~gi~~~ll~~--~~~iPILGVCLGh 95 (392)
++..+. ..++|||||-+|.
T Consensus 77 ----L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 77 ----LGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred ----HHHHHHhcCCCCeEEEEECCC
Confidence 333333 2389999999997
No 175
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.79 E-value=21 Score=35.28 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=42.8
Q ss_pred cEEEEEECCCC-chHHHHHHHHH--hCCCCeEEEeCCCCCHHHHHh--hhcccCCcCEEEECCCCCCCCCCCchhHHHHH
Q 046651 5 VRTLLIDNYDS-YTYNIYQELST--INGVPPVVVRNDEWTWRDICR--YLYEENAFDNIVISPGPGSPACPEDIGICLRV 79 (392)
Q Consensus 5 ~r~LlIDnyDS-yT~nl~q~L~~--v~G~~pvVV~nd~~~~eel~~--~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~l 79 (392)
||++|+-|.+. -...+++.+.. ..|.++++-. +. .+.+.. .-.++..+|.||.-||-|+ .++.
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l~~g~~~~~~~-~~--~~~~~~~~~~~~~~~~D~vi~lGGDGT---------~L~a 68 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELLPPDWEIIYEM-EA--AKALGMDGLDIEEINADVIITIGGDGT---------ILRT 68 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHhcCCEEEEec-hh--hhhcCcccCcccccCCCEEEEEcCcHH---------HHHH
Confidence 88999988654 23333333322 1465554322 11 111100 0001135799999899886 3455
Q ss_pred HHHcCCCCEEEEcHHH
Q 046651 80 LLECWDVPILGVCLGH 95 (392)
Q Consensus 80 l~~~~~iPILGVCLGh 95 (392)
.+.. ..|||||=+|+
T Consensus 69 ~~~~-~~PilGIN~G~ 83 (271)
T PRK01185 69 LQRA-KGPILGINMGG 83 (271)
T ss_pred HHHc-CCCEEEEECCC
Confidence 5554 56999999984
No 176
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=60.44 E-value=62 Score=30.50 Aligned_cols=93 Identities=16% Similarity=0.068 Sum_probs=54.7
Q ss_pred ccEEEEEECC----CCchHHHHHHHHHhCCCC-eEEEeCCC---CCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCch
Q 046651 4 FVRTLLIDNY----DSYTYNIYQELSTINGVP-PVVVRNDE---WTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDI 73 (392)
Q Consensus 4 ~~r~LlIDny----DSyT~nl~q~L~~v~G~~-pvVV~nd~---~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~ 73 (392)
..|+++|..- +.+...+.+.+++ +|+. +.++.-+. ..-+++...+ ...|+|+++||--.-.. ..+.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~-lG~~~v~~~~~~~~~~a~~~~~~~~l---~~ad~I~~~GG~~~~~~~~l~~t 104 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFER-LGAREVEVLVIDSREAANDPEVVARL---RDADGIFFTGGDQLRITSALGGT 104 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHH-cCCceeEEeccCChHHcCCHHHHHHH---HhCCEEEEeCCcHHHHHHHHcCC
Confidence 4689999765 3556667777877 6875 44443331 1123444444 67999999877421100 0111
Q ss_pred hHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 74 GICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 74 gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
++ .+.|++ ..+.|+.|+--|.-+++..
T Consensus 105 ~l-~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 105 PL-LDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred hH-HHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 21 233333 2599999999998887664
No 177
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=60.44 E-value=36 Score=30.28 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=44.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.|++||||........+...|.. .|..+..... .++....+ ....+|.|++... -|. ...+..+..+-...
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~----~~~~~~~~-~~~~~dlvl~d~~--~~~-~~g~~~~~~l~~~~ 73 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQS-EGFTVEWFER----GLPALDKL-RQQPPDLVILDVG--LPD-ISGFELCRQLLAFH 73 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH-CCCEEEEEcC----HHHHHHHH-hcCCCCEEEEeCC--CCC-CCHHHHHHHHHhhC
Confidence 47899999866666667777766 5766543322 22332222 2356899988422 121 11233333333333
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
..+|++-+.
T Consensus 74 ~~~~ii~ls 82 (228)
T PRK11083 74 PALPVIFLT 82 (228)
T ss_pred CCCCEEEEE
Confidence 578888775
No 178
>PRK06242 flavodoxin; Provisional
Probab=60.19 E-value=32 Score=29.76 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=30.2
Q ss_pred cEEEEEECC--CCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDNY--DSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDny--DSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
||++||=.- ...|..+++.|++..+.+. +.-.+...+++ ..+|.|||
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~~~--~~i~~~~~~~~-------~~~d~ii~ 49 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLDAEV--IDPGDVNPEDL-------SEYDLIGF 49 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcCcEE--ecHHHCCcccH-------hHCCEEEE
Confidence 777777543 3578899999998776544 32222222333 45999999
No 179
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.18 E-value=23 Score=35.62 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=24.1
Q ss_pred CcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGh 95 (392)
.+|-||.-||-|+. ++..+. ..++|||||=+|.
T Consensus 68 ~~Dlvi~iGGDGTl---------L~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 68 SMKFAIVLGGDGTV---------LSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred CcCEEEEEeCcHHH---------HHHHHHhcCCCCcEEEEeCCC
Confidence 57899998998863 333333 2389999999884
No 180
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.15 E-value=10 Score=37.36 Aligned_cols=64 Identities=25% Similarity=0.319 Sum_probs=40.1
Q ss_pred cEEEEEECCCCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL 81 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~ 81 (392)
|++.||-|...-...+++.|... .|.+. ++ ..+|.||.-||-|+. ++.++
T Consensus 1 M~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~-----~~-------------~~~Dlvi~iGGDGT~---------L~a~~ 53 (265)
T PRK04885 1 MKVAIISNGDPKSKRVASKLKKYLKDFGFIL-----DE-------------KNPDIVISVGGDGTL---------LSAFH 53 (265)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHcCCcc-----CC-------------cCCCEEEEECCcHHH---------HHHHH
Confidence 78999987433344455544432 35441 11 347898888998863 33333
Q ss_pred H--c--CCCCEEEEcHHH
Q 046651 82 E--C--WDVPILGVCLGH 95 (392)
Q Consensus 82 ~--~--~~iPILGVCLGh 95 (392)
. . .++|||||=+|+
T Consensus 54 ~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 54 RYENQLDKVRFVGVHTGH 71 (265)
T ss_pred HhcccCCCCeEEEEeCCC
Confidence 3 1 489999999986
No 181
>PRK13435 response regulator; Provisional
Probab=57.57 E-value=40 Score=28.35 Aligned_cols=87 Identities=10% Similarity=0.084 Sum_probs=48.9
Q ss_pred CCccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH
Q 046651 2 LEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL 81 (392)
Q Consensus 2 ~~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~ 81 (392)
+..+++||+|+.......+...|+. .|...+..-.+. ++....+ ....+|.||+-..- +.....+.. .+.+.
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~-~~~~~~~~~~~~---~~~~~~~-~~~~~dliivd~~~--~~~~~~~~~-~~~l~ 74 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEE-AGHEVVGIAMSS---EQAIALG-RRRQPDVALVDVHL--ADGPTGVEV-ARRLS 74 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHh-cCCeEEEeeCCH---HHHHHHh-hhcCCCEEEEeeec--CCCCcHHHH-HHHHH
Confidence 4578999999876666677788875 577654333332 3333322 22569999994321 111112222 23333
Q ss_pred HcCCCCEEEEcHHHH
Q 046651 82 ECWDVPILGVCLGHQ 96 (392)
Q Consensus 82 ~~~~iPILGVCLGhQ 96 (392)
....+|++-++--.+
T Consensus 75 ~~~~~pii~ls~~~~ 89 (145)
T PRK13435 75 ADGGVEVVFMTGNPE 89 (145)
T ss_pred hCCCCCEEEEeCCHH
Confidence 345889988865433
No 182
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=56.57 E-value=65 Score=31.26 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=49.5
Q ss_pred cEEEEEECCCCch---H----HHHHHHHHhCCCCeEEEeCCCC-CHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHH
Q 046651 5 VRTLLIDNYDSYT---Y----NIYQELSTINGVPPVVVRNDEW-TWRDICRYLYEENAFDNIVISPGPGSPACPEDIGIC 76 (392)
Q Consensus 5 ~r~LlIDnyDSyT---~----nl~q~L~~v~G~~pvVV~nd~~-~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~ 76 (392)
.|++||-|--|.. . .+...|.. .|.++.++..... ..+++..... +..+|.||+.||-|+... .
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~~~~~~~~~~~~~-~~~~d~ivv~GGDGTl~~------v 73 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWEKGDAARYVEEAR-KFGVDTVIAGGGDGTINE------V 73 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecCcccHHHHHHHHH-hcCCCEEEEECCCChHHH------H
Confidence 3789998874432 2 23444444 6888776554333 2333332221 246899999999998531 2
Q ss_pred HHHHHHcCCCCEEE-EcHHHH-HHHHHhC
Q 046651 77 LRVLLECWDVPILG-VCLGHQ-ALGFVHG 103 (392)
Q Consensus 77 ~~ll~~~~~iPILG-VCLGhQ-~La~a~G 103 (392)
..-+....+.|.|| |=.|-- .++..+|
T Consensus 74 ~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~ 102 (293)
T TIGR00147 74 VNALIQLDDIPALGILPLGTANDFARSLG 102 (293)
T ss_pred HHHHhcCCCCCcEEEEcCcCHHHHHHHcC
Confidence 22222323667788 555533 3344444
No 183
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=55.88 E-value=25 Score=31.01 Aligned_cols=52 Identities=17% Similarity=0.079 Sum_probs=31.5
Q ss_pred CCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhccc-CCcCEEEECCCCCC
Q 046651 14 DSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEE-NAFDNIVISPGPGS 66 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~-~~fDgIVISpGPGs 66 (392)
|++.+.|.+.|.+ .|.++..+..-..+.+++...|-+. ..+|.||++||-|-
T Consensus 26 d~n~~~l~~~l~~-~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 26 DSNGPLLAALLEE-AGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred eCcHHHHHHHHHH-CCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 5677788888888 6987754321111234443333221 46899999988543
No 184
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=55.52 E-value=48 Score=29.28 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=42.6
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
|++|++|........+.+.+.. .|..+....+ .++....+ ....+|.|++... -|. ...+..+..+-....
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~-~~~~v~~~~~----~~~~~~~~-~~~~~d~vild~~--~~~-~~~~~~~~~i~~~~~ 71 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQ-NGFAVDCVFD----GLAADHLL-QSEMYALAVLDIN--MPG-MDGLEVLQRLRKRGQ 71 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-CCCEEEEeCC----HHHHHHHH-hhCCCCEEEEeCC--CCC-CcHHHHHHHHHhcCC
Confidence 7899999876666677777766 5655432222 22222222 2256899988422 121 122333333322234
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
++|++-++
T Consensus 72 ~~~ii~lt 79 (221)
T PRK15479 72 TLPVLLLT 79 (221)
T ss_pred CCCEEEEE
Confidence 78887664
No 185
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.42 E-value=32 Score=34.42 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=44.8
Q ss_pred ccEEEEEECCCCc-hH----HHHHHHHHhCCCCeEEEeCCCCC--HHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHH
Q 046651 4 FVRTLLIDNYDSY-TY----NIYQELSTINGVPPVVVRNDEWT--WRDICRYLYEENAFDNIVISPGPGSPACPEDIGIC 76 (392)
Q Consensus 4 ~~r~LlIDnyDSy-T~----nl~q~L~~v~G~~pvVV~nd~~~--~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~ 76 (392)
.+|++||-|.+.- .. .+.+.|++ .|.++.+....... .+..... ....+|.||.-||-|+.
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~-~g~~v~v~~~~~~~~~~~~~~~~--~~~~~d~vi~~GGDGT~--------- 70 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEA-RGCKVLMGPSGPKDNPYPVFLAS--ASELIDLAIVLGGDGTV--------- 70 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecCchhhccccchhhc--cccCcCEEEEECCcHHH---------
Confidence 4569999886432 11 24444544 68887665432110 0111010 01358999999998864
Q ss_pred HHHHHH--cCCCCEEEEcH-HH
Q 046651 77 LRVLLE--CWDVPILGVCL-GH 95 (392)
Q Consensus 77 ~~ll~~--~~~iPILGVCL-Gh 95 (392)
++.++. ..++|++||=. |+
T Consensus 71 l~~~~~~~~~~~pv~gin~~G~ 92 (305)
T PRK02645 71 LAAARHLAPHDIPILSVNVGGH 92 (305)
T ss_pred HHHHHHhccCCCCEEEEecCCc
Confidence 333333 24999999988 53
No 186
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=55.13 E-value=35 Score=33.03 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=52.4
Q ss_pred CCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC---CCchhHHHHHHHH--cCCCCE
Q 046651 14 DSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC---PEDIGICLRVLLE--CWDVPI 88 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~---~~d~gi~~~ll~~--~~~iPI 88 (392)
|-|....+..|+. .|+.++-+.-...+.+++...| .+.|.|.++||. +..- ....| ...+|++ ..++|.
T Consensus 48 ~~Yv~k~~~~l~~-lg~~v~~L~l~~~~~~~Ie~~l---~~~d~IyVgGGN-TF~LL~~lke~g-ld~iIr~~vk~G~~Y 121 (224)
T COG3340 48 DFYVEKVRNALAK-LGLEVSELHLSKPPLAAIENKL---MKADIIYVGGGN-TFNLLQELKETG-LDDIIRERVKAGTPY 121 (224)
T ss_pred HHHHHHHHHHHHH-cCCeeeeeeccCCCHHHHHHhh---hhccEEEECCch-HHHHHHHHHHhC-cHHHHHHHHHcCCce
Confidence 3455567777877 7999999988888899999988 789999997663 2210 01112 2355555 359999
Q ss_pred EEEcHH
Q 046651 89 LGVCLG 94 (392)
Q Consensus 89 LGVCLG 94 (392)
.|.--|
T Consensus 122 iG~SAG 127 (224)
T COG3340 122 IGWSAG 127 (224)
T ss_pred EEeccC
Confidence 998766
No 187
>PRK05568 flavodoxin; Provisional
Probab=54.96 E-value=1.3e+02 Score=25.56 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=33.7
Q ss_pred EEEE-ECCCCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC
Q 046651 7 TLLI-DNYDSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC 69 (392)
Q Consensus 7 ~LlI-DnyDSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~ 69 (392)
++|| .-.-++|..+++.|++. .|++++++...+.+..++ ..+|.||| |+|.-
T Consensus 4 ~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~-------~~~d~iil----gsp~y 59 (142)
T PRK05568 4 INIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDV-------KGADVVAL----GSPAM 59 (142)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHH-------HhCCEEEE----ECCcc
Confidence 4444 22334677788877664 578888887766555554 45999999 56643
No 188
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.18 E-value=31 Score=34.46 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=43.5
Q ss_pred EEEEEECCCCc-hH----HHHHHHHHhCCCCeEEEeCCCC-------CHHHHHhhhcccCCcCEEEECCCCCCCCCCCch
Q 046651 6 RTLLIDNYDSY-TY----NIYQELSTINGVPPVVVRNDEW-------TWRDICRYLYEENAFDNIVISPGPGSPACPEDI 73 (392)
Q Consensus 6 r~LlIDnyDSy-T~----nl~q~L~~v~G~~pvVV~nd~~-------~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~ 73 (392)
+++||-|.+.- .- .+.+.|.+ .|.++.+...... ...+... + ...+|-||.-||-|+.
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~~~~~~~~~~~~~~~~~~~-~--~~~~d~vi~~GGDGt~------ 75 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDEETAEVLPGHGLQTVSRKL-L--GEVCDLVIVVGGDGSL------ 75 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcccccccchhh-c--ccCCCEEEEEeCcHHH------
Confidence 48998775542 22 34444544 6878766542110 0000011 1 1358899998998864
Q ss_pred hHHHHHHHH--cCCCCEEEEcHHH
Q 046651 74 GICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 74 gi~~~ll~~--~~~iPILGVCLGh 95 (392)
++.++. ..++|||||=.|+
T Consensus 76 ---l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 76 ---LGAARALARHNVPVLGINRGR 96 (295)
T ss_pred ---HHHHHHhcCCCCCEEEEeCCc
Confidence 233332 2499999999986
No 189
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=52.99 E-value=36 Score=35.72 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=29.5
Q ss_pred CCchHHHHHHHHHhCCCCeE---EEeCCCCCHHHHHhhhcccCCcCEEEECCCCC
Q 046651 14 DSYTYNIYQELSTINGVPPV---VVRNDEWTWRDICRYLYEENAFDNIVISPGPG 65 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pv---VV~nd~~~~eel~~~l~e~~~fDgIVISpGPG 65 (392)
|++..-|.+.|.. .|.++. +|+.|...+.+....+. ..+|-||++||-|
T Consensus 19 dtN~~~l~~~L~~-~G~~v~~~~~v~Dd~~~i~~~l~~a~--~~~DlVIttGGlg 70 (413)
T TIGR00200 19 NTNAQWLADFLAH-QGLPLSRRTTVGDNPERLKTIIRIAS--ERADVLIFNGGLG 70 (413)
T ss_pred EchHHHHHHHHHH-CCCeEEEEEEeCCCHHHHHHHHHHHh--cCCCEEEEcCCCC
Confidence 4566678888888 798764 33333322222222221 4689999998844
No 190
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=51.72 E-value=41 Score=29.54 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=30.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
|++|+||+.......+.+.|+. .|..++.. .+. .++....+ ....+|-||+-
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~-~~~~v~~~-~~~--~~~~~~~~-~~~~~dlvi~d 52 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAE-LTE--GGSAVQRV-ETLKPDIVIID 52 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhc-CCCEEEEE-eCC--HHHHHHHH-HccCCCEEEEe
Confidence 7899999865555566677765 57655422 222 23333322 22568888883
No 191
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=51.17 E-value=18 Score=34.48 Aligned_cols=45 Identities=31% Similarity=0.549 Sum_probs=29.2
Q ss_pred CcCEEEECCCCCCCCCCCchhHHH-HHHHHcCCCCEEEEcHHHHHHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICL-RVLLECWDVPILGVCLGHQALGF 100 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~-~ll~~~~~iPILGVCLGhQ~La~ 100 (392)
++|.|+++=||||.+-. .+|+.. +-|....++|+.|||- +.+++.
T Consensus 58 dld~iav~~GPGSFTGl-RIG~~~AkgLA~~l~iplvgvss-L~~~A~ 103 (220)
T COG1214 58 DLDAIAVAKGPGSFTGL-RIGVAFAKGLALALNIPLVGVSS-LEALAQ 103 (220)
T ss_pred HCCEEEEccCCCcccch-hhHHHHHHHHHHHcCCCEEEeCH-HHHHHH
Confidence 68999999999998743 222221 2222334999999984 444443
No 192
>PRK09483 response regulator; Provisional
Probab=51.14 E-value=43 Score=29.73 Aligned_cols=81 Identities=21% Similarity=0.251 Sum_probs=42.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
|++||||........+-..|....|..++..-.+ .++....+ +...+|.||+--. -|. ......+..+.....
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~---~~~~~~~~-~~~~~dlvi~d~~--~~~-~~g~~~~~~l~~~~~ 74 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACC---GEDAVKWC-RTNAVDVVLMDMN--MPG-IGGLEATRKILRYTP 74 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCC---HHHHHHHH-HhcCCCEEEEeCC--CCC-CCHHHHHHHHHHHCC
Confidence 6899999866666667777765335554322222 33443322 2356898888321 111 112233333333345
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
++|++-+.
T Consensus 75 ~~~ii~ls 82 (217)
T PRK09483 75 DVKIIMLT 82 (217)
T ss_pred CCeEEEEe
Confidence 67877664
No 193
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=51.13 E-value=16 Score=32.40 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----CchhHHHHHHHH--cCCCCEEE
Q 046651 17 TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIGICLRVLLE--CWDVPILG 90 (392)
Q Consensus 17 T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~gi~~~ll~~--~~~iPILG 90 (392)
...+.+.+.. +|+++..+.....+-+++...+ ...|+|+|+||- +... .+.+ ..+.|++ ..+.|+.|
T Consensus 2 ~~~~~~~f~~-~g~~v~~l~~~~~~~~~~~~~i---~~ad~I~~~GG~--~~~l~~~l~~t~-l~~~i~~~~~~G~vi~G 74 (154)
T PF03575_consen 2 VEKFRKAFRK-LGFEVDQLDLSDRNDADILEAI---READAIFLGGGD--TFRLLRQLKETG-LDEAIREAYRKGGVIIG 74 (154)
T ss_dssp HHHHHHHHHH-CT-EEEECCCTSCGHHHHHHHH---HHSSEEEE--S---HHHHHHHHHHTT-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-CCCEEEEEeccCCChHHHHHHH---HhCCEEEECCCC--HHHHHHHHHhCC-HHHHHHHHHHCCCEEEE
Confidence 3456677777 8999888876665556676666 679999998773 3210 1112 2334444 24799999
Q ss_pred EcHHHHH
Q 046651 91 VCLGHQA 97 (392)
Q Consensus 91 VCLGhQ~ 97 (392)
+--|.-+
T Consensus 75 ~SAGA~i 81 (154)
T PF03575_consen 75 TSAGAMI 81 (154)
T ss_dssp ETHHHHC
T ss_pred EChHHhh
Confidence 9988633
No 194
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=50.27 E-value=54 Score=29.82 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=45.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
..++||||........+...|.. .|..+.++.. .++....+ ....||.||+-.. -|. ...+.++ +.++.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~-~g~~v~~~~~----~~~~~~~~-~~~~~dlvild~~--l~~-~~g~~~~-~~lr~~ 74 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTE-QGFQVRSAAN----AEQMDRLL-TRESFHLMVLDLM--LPG-EDGLSIC-RRLRSQ 74 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHH-hcCCCCEEEEeCC--CCC-CCHHHHH-HHHHhc
Confidence 46899999866666667777766 6877655432 23333322 2356899988422 121 1122333 33443
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
..++||+-++-
T Consensus 75 ~~~~pii~ls~ 85 (239)
T PRK09468 75 NNPTPIIMLTA 85 (239)
T ss_pred CCCCCEEEEEC
Confidence 34789888863
No 195
>PRK09271 flavodoxin; Provisional
Probab=49.27 E-value=87 Score=27.89 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=29.7
Q ss_pred cEEEEEEC-CCCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDN-YDSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDn-yDSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
||++||=- --..|..+++.|++. .|+++.+...+.....++.. +...+|.|||
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~---~~~~~d~vil 57 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPL---DPEDYDLYLL 57 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEeccccccccccc---CcccCCEEEE
Confidence 77777742 223466677766543 57776655544433333221 2246899999
No 196
>PRK03673 hypothetical protein; Provisional
Probab=48.91 E-value=58 Score=34.03 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHHhCCCCeEEEe--CCCCCHHHHHhhhccc-CCcCEEEECCCCC
Q 046651 14 DSYTYNIYQELSTINGVPPVVVR--NDEWTWRDICRYLYEE-NAFDNIVISPGPG 65 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV~--nd~~~~eel~~~l~e~-~~fDgIVISpGPG 65 (392)
|++.+-|.+.|.. .|+++..+. .|+ .+++...|-+. ..+|.||+|||=|
T Consensus 20 dtN~~~la~~L~~-~G~~v~~~~~v~D~--~~~i~~~l~~a~~~~DlVI~tGGlG 71 (396)
T PRK03673 20 DTNAAWLADFFFH-QGLPLSRRNTVGDN--LDALVAILRERSQHADVLIVNGGLG 71 (396)
T ss_pred EhHHHHHHHHHHH-CCCEEEEEEEcCCC--HHHHHHHHHHHhccCCEEEEcCCCC
Confidence 4666678888888 798874332 333 34454433211 4689999999865
No 197
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=48.91 E-value=55 Score=29.45 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=43.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC- 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~- 83 (392)
+++||||........+...|.. .|..++...+ .++....+ ....+|.||+.-.. |. ......+ +.++..
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~~~~~~-~~~~~dlvild~~l--~~-~~g~~~~-~~l~~~~ 72 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQ-NGFQPVEAED----YDSAVNQL-NEPWPDLILLDWML--PG-GSGIQFI-KHLKRES 72 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHH-hccCCCEEEEeCCC--CC-CCHHHHH-HHHHhcc
Confidence 6899999866666677777765 6776653322 33333322 23568999984221 11 1122333 333332
Q ss_pred --CCCCEEEEc
Q 046651 84 --WDVPILGVC 92 (392)
Q Consensus 84 --~~iPILGVC 92 (392)
..+|++-+.
T Consensus 73 ~~~~~pvi~ls 83 (229)
T PRK10161 73 MTRDIPVVMLT 83 (229)
T ss_pred ccCCCCEEEEE
Confidence 368888764
No 198
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=48.50 E-value=31 Score=29.81 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=30.2
Q ss_pred CCCchHHHHHHHHHhCCCCeEEEe--CCCCCHHHHHhhhccc-CCcCEEEECCCCC
Q 046651 13 YDSYTYNIYQELSTINGVPPVVVR--NDEWTWRDICRYLYEE-NAFDNIVISPGPG 65 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~pvVV~--nd~~~~eel~~~l~e~-~~fDgIVISpGPG 65 (392)
+|+...-|..+|.+ .|.++..+. .|+ .+++...+-+. ..+|.||++||-|
T Consensus 17 ~d~n~~~l~~~l~~-~G~~v~~~~~v~Dd--~~~i~~~i~~~~~~~DlvittGG~g 69 (133)
T cd00758 17 EDTNGPALEALLED-LGCEVIYAGVVPDD--ADSIRAALIEASREADLVLTTGGTG 69 (133)
T ss_pred EEchHHHHHHHHHH-CCCEEEEeeecCCC--HHHHHHHHHHHHhcCCEEEECCCCC
Confidence 36777788888888 687765432 233 33333332111 3489999998854
No 199
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=47.80 E-value=1.5e+02 Score=27.04 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=37.5
Q ss_pred ccEEEEEE-------------CCCCchHH-HHHHHHH---hCCCCeEEEeCCCCCHHHHHhhhccc-CCcCEEEECCCCC
Q 046651 4 FVRTLLID-------------NYDSYTYN-IYQELST---INGVPPVVVRNDEWTWRDICRYLYEE-NAFDNIVISPGPG 65 (392)
Q Consensus 4 ~~r~LlID-------------nyDSyT~n-l~q~L~~---v~G~~pvVV~nd~~~~eel~~~l~e~-~~fDgIVISpGPG 65 (392)
.||+|||. -|++-|+. |-+.+.+ -.|+++.....+. --++..++-++ ..+|+|||=||--
T Consensus 1 ~~~ilvinGPNLN~LG~REp~iYG~~tl~~i~~~~~~~a~~~g~~~~~~QSN~--EGelId~i~~a~~~~dgiIINpga~ 78 (146)
T PRK13015 1 KGKILVLNGPNLNLLGTREPAIYGHETLADVEALCRAAAEALGLEVEFRQSNH--EGELIDWIHEARGDVAGIVINPGAY 78 (146)
T ss_pred CCEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCc--HHHHHHHHHHhhhcCCEEEEcchHH
Confidence 37888883 36666653 4444433 3688887775554 24666666544 3589999976643
Q ss_pred C
Q 046651 66 S 66 (392)
Q Consensus 66 s 66 (392)
+
T Consensus 79 T 79 (146)
T PRK13015 79 T 79 (146)
T ss_pred h
Confidence 3
No 200
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.76 E-value=39 Score=36.80 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=44.7
Q ss_pred ccEEEEEECCCC-chH----HHHHHHHHhCCCCeEEEeCCCCCHHHHHh-----h--hcccCCcCEEEECCCCCCCCCCC
Q 046651 4 FVRTLLIDNYDS-YTY----NIYQELSTINGVPPVVVRNDEWTWRDICR-----Y--LYEENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 4 ~~r~LlIDnyDS-yT~----nl~q~L~~v~G~~pvVV~nd~~~~eel~~-----~--l~e~~~fDgIVISpGPGsp~~~~ 71 (392)
-|+++||-|.+. ... .|...|.+ .|.++.+.... .+.+.. . ..+...+|.||.-||-|+.
T Consensus 290 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~---- 361 (569)
T PRK14076 290 PTKFGIVSRIDNEEAINLALKIIKYLDS-KGIPYELESFL---YNKLKNRLNEECNLIDDIEEISHIISIGGDGTV---- 361 (569)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHHHH-CCCEEEEechh---hhhhcccccccccccccccCCCEEEEECCcHHH----
Confidence 488999988543 233 34444444 57766553221 111100 0 0001357999998998863
Q ss_pred chhHHHHHHHH--cCCCCEEEEcHHH
Q 046651 72 DIGICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 72 d~gi~~~ll~~--~~~iPILGVCLGh 95 (392)
++..+. ..++|||||=+|.
T Consensus 362 -----L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 362 -----LRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred -----HHHHHHhcCCCCCEEEEcCCC
Confidence 344443 2489999999986
No 201
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=46.55 E-value=63 Score=33.84 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=30.7
Q ss_pred CCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcc-cCCcCEEEECCCCC
Q 046651 13 YDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYE-ENAFDNIVISPGPG 65 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e-~~~fDgIVISpGPG 65 (392)
||++.+.|..+|.+ .|++++.+..-..+.+++...|-+ ...+|.||++||-+
T Consensus 202 ~dsn~~~l~a~l~~-~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S 254 (411)
T PRK10680 202 YDTNRLAVHLMLEQ-LGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_pred EEhHHHHHHHHHHH-CCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence 35666778888887 788765432211123444443322 15689999987743
No 202
>PRK09267 flavodoxin FldA; Validated
Probab=46.40 E-value=63 Score=28.73 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=31.2
Q ss_pred cEEEEEEC-CCCchHHHHHHHHHhCCC-CeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDN-YDSYTYNIYQELSTINGV-PPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDn-yDSyT~nl~q~L~~v~G~-~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
|+++||=. ....|..+++.|++..+. ++.++.-++.+..++ ..+|.|||
T Consensus 2 mki~IiY~S~tGnT~~vA~~Ia~~l~~~~~~~~~~~~~~~~~l-------~~~d~vi~ 52 (169)
T PRK09267 2 AKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDF-------EAYDLLIL 52 (169)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHhCCCceEEEEhhhCCHhhH-------hhCCEEEE
Confidence 67777643 234678899999887654 345554444433444 45999999
No 203
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=46.23 E-value=36 Score=29.33 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=31.0
Q ss_pred CCCchHHHHHHHHHhCCCCe---EEEeCCCCCHHHHHhhhcccCCcCEEEECCCCC
Q 046651 13 YDSYTYNIYQELSTINGVPP---VVVRNDEWTWRDICRYLYEENAFDNIVISPGPG 65 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~p---vVV~nd~~~~eel~~~l~e~~~fDgIVISpGPG 65 (392)
+|+....|.+.|++ .|.++ .+++.|.....+....+. ..+|.||++||-|
T Consensus 16 ~d~~~~~l~~~l~~-~G~~~~~~~~v~Dd~~~I~~~l~~~~--~~~dliittGG~g 68 (135)
T smart00852 16 YDSNGPALAELLTE-LGIEVTRYVIVPDDKEAIKEALREAL--ERADLVITTGGTG 68 (135)
T ss_pred ccCcHHHHHHHHHH-CCCeEEEEEEeCCCHHHHHHHHHHHH--hCCCEEEEcCCCC
Confidence 46777788888888 78765 345533322322222222 4589999998866
No 204
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=45.63 E-value=1.8e+02 Score=26.43 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=36.8
Q ss_pred cEEEEEE-------------CCCCchHH-HHHHHH---HhCCCCeEEEeCCCCCHHHHHhhhcccC-CcCEEEECCCCC
Q 046651 5 VRTLLID-------------NYDSYTYN-IYQELS---TINGVPPVVVRNDEWTWRDICRYLYEEN-AFDNIVISPGPG 65 (392)
Q Consensus 5 ~r~LlID-------------nyDSyT~n-l~q~L~---~v~G~~pvVV~nd~~~~eel~~~l~e~~-~fDgIVISpGPG 65 (392)
||+|||. -|++-|.. |-+.+. .-.|++++....+. --++..++-+.. .+|+|||=||--
T Consensus 2 ~~ilvlNGPNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~--EGelId~I~~a~~~~dgiiINpga~ 78 (146)
T PRK05395 2 MKILVLNGPNLNLLGTREPEIYGSTTLADIEALLEEEAAELGVELEFFQSNH--EGELIDRIHEARDGADGIIINPGAY 78 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCc--HHHHHHHHHhcccCCcEEEECchHH
Confidence 6777773 36666653 444443 33688887775554 346666665543 689999966643
No 205
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=44.99 E-value=11 Score=34.35 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=28.7
Q ss_pred CcCEEEECCCCCCCCCCCchhHHHHHHHHcCCCCEEEEcH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICLRVLLECWDVPILGVCL 93 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~iPILGVCL 93 (392)
..|.|||-||=.-|....+..-..+++.+.....|.|||+
T Consensus 80 ~~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~~~iiGiCF 119 (147)
T PF09897_consen 80 HPDVVVLMGGLAMPKSGVTPEDVNELIKKISPKKIIGICF 119 (147)
T ss_dssp -EEEEEEEGGGGSTTTS--HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEEEcccccCCCCCCHHHHHHHHHHhCcCCEEEEeh
Confidence 4899999999877876666666677777744555999995
No 206
>PRK11914 diacylglycerol kinase; Reviewed
Probab=44.87 E-value=41 Score=33.03 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=39.1
Q ss_pred CCccEEEEEECCCCch---H----HHHHHHHHhCCCCeEEEeCCCC-CHHHHHhhhcccCCcCEEEECCCCCCCC
Q 046651 2 LEFVRTLLIDNYDSYT---Y----NIYQELSTINGVPPVVVRNDEW-TWRDICRYLYEENAFDNIVISPGPGSPA 68 (392)
Q Consensus 2 ~~~~r~LlIDnyDSyT---~----nl~q~L~~v~G~~pvVV~nd~~-~~eel~~~l~e~~~fDgIVISpGPGsp~ 68 (392)
...+|++||-|.-|-. . .+.+.|.+ .|.++.++..... +.+++.... .+..+|.||+.||-|+..
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~~~~~~~~~a~~~-~~~~~d~vvv~GGDGTi~ 78 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGTDAHDARHLVAAA-LAKGTDALVVVGGDGVIS 78 (306)
T ss_pred CCCceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeCCHHHHHHHHHHH-HhcCCCEEEEECCchHHH
Confidence 3557899999965532 1 24455555 6877765543332 233332211 125689999999999864
No 207
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=44.71 E-value=1e+02 Score=30.69 Aligned_cols=63 Identities=22% Similarity=0.219 Sum_probs=39.0
Q ss_pred ccEEEEEECCCCchHH-------HHHHHHHhCCCCeEEEeCCCC-CHHHHHhhhcccCCcCEEEECCCCCCCC
Q 046651 4 FVRTLLIDNYDSYTYN-------IYQELSTINGVPPVVVRNDEW-TWRDICRYLYEENAFDNIVISPGPGSPA 68 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~n-------l~q~L~~v~G~~pvVV~nd~~-~~eel~~~l~e~~~fDgIVISpGPGsp~ 68 (392)
.+++.+|=|-.|=+.+ +...|+. .|.+..++..... ...++...+. ...||.||..||-|+..
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~-~g~~~~~~~t~~~g~a~~~a~~a~-~~~~D~via~GGDGTv~ 72 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEE-AGHELSVRVTEEAGDAIEIAREAA-VEGYDTVIAAGGDGTVN 72 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHh-cCCeEEEEEeecCccHHHHHHHHH-hcCCCEEEEecCcchHH
Confidence 3678888887665433 3333444 6888776655444 3333333221 14799999999999875
No 208
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=44.69 E-value=57 Score=35.29 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=24.5
Q ss_pred CcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQ 96 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ 96 (392)
.+|.||.-||-|+. ++..+. ...+|||||=+|..
T Consensus 262 ~~DlVIsiGGDGTl---------L~Aar~~~~~~iPILGIN~G~L 297 (508)
T PLN02935 262 KVDLVITLGGDGTV---------LWAASMFKGPVPPVVPFSMGSL 297 (508)
T ss_pred CCCEEEEECCcHHH---------HHHHHHhccCCCcEEEEeCCCc
Confidence 58999998998863 333333 23799999998853
No 209
>PRK06756 flavodoxin; Provisional
Probab=44.40 E-value=1.3e+02 Score=26.08 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=29.0
Q ss_pred cEEEEEEC-CCCchHHHHHHHHHh---CCCCeEEEeCCCC-CHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDN-YDSYTYNIYQELSTI---NGVPPVVVRNDEW-TWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDn-yDSyT~nl~q~L~~v---~G~~pvVV~nd~~-~~eel~~~l~e~~~fDgIVI 60 (392)
|+++||=. .-..|.-+++.|++. .|.+++++.-.+. ...++ ..+|.|||
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~-------~~~d~vi~ 55 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASIL-------EQYDGIIL 55 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHH-------hcCCeEEE
Confidence 67777732 233566677777554 3666665543222 23444 46999999
No 210
>PLN02929 NADH kinase
Probab=44.37 E-value=38 Score=34.18 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cCCCCEEEEcHHH
Q 046651 20 IYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CWDVPILGVCLGH 95 (392)
Q Consensus 20 l~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~~iPILGVCLGh 95 (392)
+.+.|++ .|+++..+...+. ++ .+ ..+|.||.-||-|+. ++..+. ..++|||||=.|.
T Consensus 39 ~~~~L~~-~gi~~~~v~r~~~--~~---~~---~~~Dlvi~lGGDGT~---------L~aa~~~~~~iPvlGIN~Gp 97 (301)
T PLN02929 39 CKDILQQ-KSVDWECVLRNEL--SQ---PI---RDVDLVVAVGGDGTL---------LQASHFLDDSIPVLGVNSDP 97 (301)
T ss_pred HHHHHHH-cCCEEEEeecccc--cc---cc---CCCCEEEEECCcHHH---------HHHHHHcCCCCcEEEEECCC
Confidence 3445554 7888866643331 11 11 568999999999874 222222 3489999999883
No 211
>PRK07116 flavodoxin; Provisional
Probab=44.25 E-value=1.5e+02 Score=26.22 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=23.3
Q ss_pred ccEEEEEECC-CCchHHHHHHHHHhCCCCeEEE
Q 046651 4 FVRTLLIDNY-DSYTYNIYQELSTINGVPPVVV 35 (392)
Q Consensus 4 ~~r~LlIDny-DSyT~nl~q~L~~v~G~~pvVV 35 (392)
.||+|||=.- ...|..+++.|++..|.+.+-+
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~~~i 34 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGADLFEI 34 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCCeEEE
Confidence 4788887552 3357889999999888776444
No 212
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=43.66 E-value=1.9e+02 Score=28.94 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=51.3
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCC-------CCCHHH-------HHhhhcccCCcCEEEECCCCCCCC
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRND-------EWTWRD-------ICRYLYEENAFDNIVISPGPGSPA 68 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd-------~~~~ee-------l~~~l~e~~~fDgIVISpGPGsp~ 68 (392)
..|+|+++|-+=.= -..++++.+.+..+=.++--| +.+.++ +..+|.+ ...+.+||.
T Consensus 4 ~~~~IgvFDSGVGG-LsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~-~~ik~lVIA------- 74 (269)
T COG0796 4 PQPPIGVFDSGVGG-LSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLE-RGIKALVIA------- 74 (269)
T ss_pred cCCeEEEEECCCCc-HHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHH-cCCCEEEEe-------
Confidence 45789999976221 235666666555443333222 333343 3444544 348999994
Q ss_pred CCCchhHHHHHHHHcCCCCEEEEcHH
Q 046651 69 CPEDIGICLRVLLECWDVPILGVCLG 94 (392)
Q Consensus 69 ~~~d~gi~~~ll~~~~~iPILGVCLG 94 (392)
|.....+.++.|++.-++||+||==|
T Consensus 75 CNTASa~al~~LR~~~~iPVvGviPa 100 (269)
T COG0796 75 CNTASAVALEDLREKFDIPVVGVIPA 100 (269)
T ss_pred cchHHHHHHHHHHHhCCCCEEEeccc
Confidence 55555677888888559999999744
No 213
>PRK13856 two-component response regulator VirG; Provisional
Probab=43.14 E-value=93 Score=28.54 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=42.6
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWD 85 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~ 85 (392)
++||||........+...|.. .|..+..+.+ .++....+ ....+|.||+-.. -|. .....++ +.+++...
T Consensus 3 ~ILived~~~~~~~l~~~L~~-~~~~v~~~~~----~~~~~~~~-~~~~~dlvi~d~~--l~~-~~g~~l~-~~i~~~~~ 72 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTI-HAFKVTAVAD----SQQFNRVL-ASETVDVVVVDLN--LGR-EDGLEIV-RSLATKSD 72 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHH-cCCEEEEECC----HHHHHHHH-hhCCCCEEEEeCC--CCC-CCHHHHH-HHHHhcCC
Confidence 799999765666667777765 6766544322 23333222 2357899988321 121 1122333 33344447
Q ss_pred CCEEEEc
Q 046651 86 VPILGVC 92 (392)
Q Consensus 86 iPILGVC 92 (392)
+|++-+.
T Consensus 73 ~pii~lt 79 (241)
T PRK13856 73 VPIIIIS 79 (241)
T ss_pred CcEEEEE
Confidence 8887764
No 214
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=43.08 E-value=28 Score=34.31 Aligned_cols=57 Identities=37% Similarity=0.707 Sum_probs=41.5
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCCCEEEE--cHHHHHHHHHhCCeeeecCCCc
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLECWDVPILGV--CLGHQALGFVHGADIVHAPEPV 113 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~iPILGV--CLGhQ~La~a~Gg~V~~apep~ 113 (392)
.+.|.|..+-|||--.......++.+.+....++|++|| |.||--+ |..|..+..|+
T Consensus 69 ~diD~icyTKGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigHIEM----GR~iTgA~nPv 127 (336)
T KOG2708|consen 69 DDIDCICYTKGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGHIEM----GREITGAQNPV 127 (336)
T ss_pred hhCCEEEEcCCCCCCCchhhHHHHHHHHHHHhCCCcccchhhhhhhhh----cceeccCCCCE
Confidence 458999999999875554555667777766569999998 8888655 45566666663
No 215
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=42.76 E-value=33 Score=29.09 Aligned_cols=77 Identities=23% Similarity=0.338 Sum_probs=44.2
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCC-e-------------EEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVP-P-------------VVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP 70 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~-p-------------vVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~ 70 (392)
||||||.++ .--+-|...|++...++ + ..+..+..+.+++..+. ++..+|-+||+ |-.|-
T Consensus 1 MkVLviGsG-gREHAia~~l~~s~~v~~v~~aPGN~G~~~~~~~~~~~~~d~~~l~~~a-~~~~idlvvvG--PE~pL-- 74 (100)
T PF02844_consen 1 MKVLVIGSG-GREHAIAWKLSQSPSVEEVYVAPGNPGTAELGKNVPIDITDPEELADFA-KENKIDLVVVG--PEAPL-- 74 (100)
T ss_dssp EEEEEEESS-HHHHHHHHHHTTCTTEEEEEEEE--TTGGGTSEEE-S-TT-HHHHHHHH-HHTTESEEEES--SHHHH--
T ss_pred CEEEEECCC-HHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhceecCCCCCCHHHHHHHH-HHcCCCEEEEC--ChHHH--
Confidence 899999985 55567888886632111 1 22333444567777655 34789999993 33221
Q ss_pred CchhHHHHHHHHcCCCCEEE
Q 046651 71 EDIGICLRVLLECWDVPILG 90 (392)
Q Consensus 71 ~d~gi~~~ll~~~~~iPILG 90 (392)
-.|+. +.+++. +||++|
T Consensus 75 -~~Gl~-D~l~~~-gi~vfG 91 (100)
T PF02844_consen 75 -VAGLA-DALRAA-GIPVFG 91 (100)
T ss_dssp -HTTHH-HHHHHT-T-CEES
T ss_pred -HHHHH-HHHHHC-CCcEEC
Confidence 22433 445554 899987
No 216
>PRK13573 anthranilate synthase component I; Provisional
Probab=42.56 E-value=36 Score=36.65 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=27.2
Q ss_pred EEEEEEecccccccCChHHHHHHHhCCCCCCCeEEccCCCCCC
Q 046651 340 KLTWRKFDHLASTVGGARNIFCELFGNNKAENTFWLDSSSTEK 382 (392)
Q Consensus 340 ~l~~~~~~~~~~~~g~~~~~f~~lf~~~~~~~~fWLDss~~~~ 382 (392)
...++++.... -++-.+|.+|++. .++.|||||+....
T Consensus 20 ~~~~~~~~~d~---~tp~~~~~~l~~~--~~~~~lLeS~~~~~ 57 (503)
T PRK13573 20 QVVYTRLAADL---DTPVSLMLKLAGA--RKDAFMLESVTGGE 57 (503)
T ss_pred eeEEEEecccc---CCHHHHHHHHhcC--CCCeEEEEcCCCCC
Confidence 34567775444 1454899999986 67899999987543
No 217
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=42.08 E-value=82 Score=30.11 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=52.0
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
|||||||-......-|...|+. .|..+..+.+- ++....+ +.. ||.||+- -+-|. ..-+.+|.++-.. .
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~-~g~~v~~~~~~----~~a~~~~-~~~-~dlviLD--~~lP~-~dG~~~~~~iR~~~~ 70 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEE-EGYEVDVAADG----EEALEAA-REQ-PDLVLLD--LMLPD-LDGLELCRRLRAKKG 70 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHH-CCCEEEEECCH----HHHHHHH-hcC-CCEEEEE--CCCCC-CCHHHHHHHHHhhcC
Confidence 7999999755555556666666 78888776543 3333333 224 9999993 12231 1234455554322 2
Q ss_pred CCCCEEEEcHH----HHHHHHHhCC
Q 046651 84 WDVPILGVCLG----HQALGFVHGA 104 (392)
Q Consensus 84 ~~iPILGVCLG----hQ~La~a~Gg 104 (392)
...||+-+.-- ..+.+.-.||
T Consensus 71 ~~~PIi~Lta~~~~~d~v~gl~~GA 95 (229)
T COG0745 71 SGPPIIVLTARDDEEDRVLGLEAGA 95 (229)
T ss_pred CCCcEEEEECCCcHHHHHHHHhCcC
Confidence 47888887754 3445555565
No 218
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=42.07 E-value=58 Score=33.63 Aligned_cols=59 Identities=34% Similarity=0.410 Sum_probs=37.0
Q ss_pred CCCCeEEEeCCCCCH----HH---HHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cCCCCEEEEcHHHH
Q 046651 28 NGVPPVVVRNDEWTW----RD---ICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CWDVPILGVCLGHQ 96 (392)
Q Consensus 28 ~G~~pvVV~nd~~~~----ee---l~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~~iPILGVCLGhQ 96 (392)
.+.+..|+++.+.++ +| +...+ .++..|-||+.||-|+.. ++... ..++|||||-.|--
T Consensus 68 ~~~~~~v~~~~~~~~~tTa~DT~~~~r~~-~~~gVdlIvfaGGDGTar---------DVa~av~~~vPvLGipaGvk 134 (355)
T COG3199 68 SGFKYRVIRFQESTPRTTAEDTINAVRRM-VERGVDLIVFAGGDGTAR---------DVAEAVGADVPVLGIPAGVK 134 (355)
T ss_pred hcCcceEEeecccCCCccHHHHHHHHHHH-HhcCceEEEEeCCCccHH---------HHHhhccCCCceEeeccccc
Confidence 567777776444332 11 11222 225799999999999853 22322 34999999998843
No 219
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=41.86 E-value=86 Score=27.65 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=43.1
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
+++||||....+...+...|.. .|..++...+ .++....+ ....+|.||+--. -|.. .....+ +.++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~----~~~~~~~~-~~~~~d~vi~d~~--~~~~-~g~~~~-~~l~~~~ 72 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEK-AGYDVVEAGD----GDEALTLI-NERGPDLILLDWM--LPGT-SGIELC-RRLRRRP 72 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-CCCEEEEEcC----HHHHHHHH-HhcCCCEEEEECC--CCCC-cHHHHH-HHHHccc
Confidence 6899999876676677777776 5766543322 33333322 2356999998322 1211 122222 33332
Q ss_pred -cCCCCEEEEc
Q 046651 83 -CWDVPILGVC 92 (392)
Q Consensus 83 -~~~iPILGVC 92 (392)
...+||+-++
T Consensus 73 ~~~~~~ii~ls 83 (226)
T TIGR02154 73 ETRAIPIIMLT 83 (226)
T ss_pred cCCCCCEEEEe
Confidence 1367888765
No 220
>PRK12359 flavodoxin FldB; Provisional
Probab=41.68 E-value=1.5e+02 Score=27.36 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=35.3
Q ss_pred cEEEEEECC-CCchHHHHHHHHHhCCCC-eEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCC
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTINGVP-PVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPA 68 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v~G~~-pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~ 68 (392)
||++|+=.- -.+|..+++.|++..|.+ +.++.-+..+.+++ ..||.||+ |+|+
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~~~v~v~~i~~~~~~~l-------~~yD~iIl----G~pT 55 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLM-------EQYDVLIL----GIPT 55 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEcccCChhHH-------ccCCEEEE----Eecc
Confidence 788777432 235777999998888875 44555555444555 45999999 5554
No 221
>PRK13059 putative lipid kinase; Reviewed
Probab=41.63 E-value=1.1e+02 Score=29.92 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=35.9
Q ss_pred cEEEEEECCCCchH---H----HHHHHHHhCCCCeEEEeCCCC-CHHHHHhhhcccCCcCEEEECCCCCCCC
Q 046651 5 VRTLLIDNYDSYTY---N----IYQELSTINGVPPVVVRNDEW-TWRDICRYLYEENAFDNIVISPGPGSPA 68 (392)
Q Consensus 5 ~r~LlIDnyDSyT~---n----l~q~L~~v~G~~pvVV~nd~~-~~eel~~~l~e~~~fDgIVISpGPGsp~ 68 (392)
+|+++|-|.-|-.. . +...+.+ .|.+++++..... ..+...... +..+|.||+.||-|+..
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~--~~~~d~vi~~GGDGTv~ 70 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISLEYDLKNAFKDI--DESYKYILIAGGDGTVD 70 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccCcchHHHHHHHh--hcCCCEEEEECCccHHH
Confidence 58899988655432 2 3334444 6777665544322 223222211 25689999999999864
No 222
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=41.09 E-value=25 Score=36.01 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=16.6
Q ss_pred eEEEEEecCCCEEEEeccCCCC
Q 046651 220 VLMGIMHSTRPHYGVQFHPESI 241 (392)
Q Consensus 220 ~vmgi~h~~~P~~GVQFHPEsi 241 (392)
.+.-|+. +-|+|+.||||-..
T Consensus 99 ~l~rirf-~spv~~~q~hp~k~ 119 (405)
T KOG1273|consen 99 PLKRIRF-DSPVWGAQWHPRKR 119 (405)
T ss_pred ceeEEEc-cCccceeeeccccC
Confidence 5667774 45999999999874
No 223
>PRK05569 flavodoxin; Provisional
Probab=41.06 E-value=1.1e+02 Score=26.06 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=34.3
Q ss_pred EEEEEEC-CCCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC
Q 046651 6 RTLLIDN-YDSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC 69 (392)
Q Consensus 6 r~LlIDn-yDSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~ 69 (392)
+++||=. .-.+|..+++.+++. .|+++.++.-.+.+..++ ..+|+||| |+|..
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~-------~~~d~iil----gsPty 59 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDV-------LEADAVAF----GSPSM 59 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHH-------hhCCEEEE----ECCCc
Confidence 5555533 233577788888764 577777776665545555 45999999 66653
No 224
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=40.59 E-value=1.6e+02 Score=25.15 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhCCCCeEEEeC--CCCCHHHHHhhhcccCCcCEEEECCCC-CCCCCCCchhHHHHHHHHcCCCCEE
Q 046651 17 TYNIYQELSTINGVPPVVVRN--DEWTWRDICRYLYEENAFDNIVISPGP-GSPACPEDIGICLRVLLECWDVPIL 89 (392)
Q Consensus 17 T~nl~q~L~~v~G~~pvVV~n--d~~~~eel~~~l~e~~~fDgIVISpGP-Gsp~~~~d~gi~~~ll~~~~~iPIL 89 (392)
|..-.+.|.+.+|+++..|.. .+- -.++..++ ...++|.||-+|.| |.-....|.-.+++.-.++ +||++
T Consensus 33 T~gTa~~L~~~~Gi~v~~vk~~~~~g-~~~i~~~i-~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~-~Ip~~ 105 (115)
T cd01422 33 TGTTGLLIQEATGLTVNRMKSGPLGG-DQQIGALI-AEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVY-NIPLA 105 (115)
T ss_pred echHHHHHHHhhCCcEEEEecCCCCc-hhHHHHHH-HcCceeEEEEcCCCCCCCcccccHHHHHHHHHHc-CCCEE
Confidence 334456666656888877742 222 24455544 44799999999987 5432133332233333334 88876
No 225
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=40.16 E-value=84 Score=32.91 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=42.7
Q ss_pred EEEEEEC-CCCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC
Q 046651 6 RTLLIDN-YDSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC 69 (392)
Q Consensus 6 r~LlIDn-yDSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~ 69 (392)
+|+|+-. --++|..++++|++- .|+.++++.-...++.|+...+ .+.++||| |+|+-
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i---~~a~~~vv----GsPT~ 308 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEI---LDAKGLVV----GSPTI 308 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHH---hhcceEEE----ecCcc
Confidence 4666643 236788888777653 6899999988887888988866 67999999 67753
No 226
>PRK13337 putative lipid kinase; Reviewed
Probab=40.09 E-value=1.7e+02 Score=28.83 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=37.5
Q ss_pred cEEEEEECCCCchH-------HHHHHHHHhCCCCeEEEeCC-CCCHHHHHhhhcccCCcCEEEECCCCCCCC
Q 046651 5 VRTLLIDNYDSYTY-------NIYQELSTINGVPPVVVRND-EWTWRDICRYLYEENAFDNIVISPGPGSPA 68 (392)
Q Consensus 5 ~r~LlIDnyDSyT~-------nl~q~L~~v~G~~pvVV~nd-~~~~eel~~~l~e~~~fDgIVISpGPGsp~ 68 (392)
+|++||-|.-|=.. .+...|.+ .|.++.++.-. ....+++.... .+..+|.||+.||-|+..
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~~~~a~~~a~~~-~~~~~d~vvv~GGDGTl~ 71 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTGPGDATLAAERA-VERKFDLVIAAGGDGTLN 71 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecCCCCHHHHHHHH-HhcCCCEEEEEcCCCHHH
Confidence 58899998765432 23445555 68877655332 22344443322 125689999999999853
No 227
>PRK10651 transcriptional regulator NarL; Provisional
Probab=39.96 E-value=94 Score=27.10 Aligned_cols=83 Identities=16% Similarity=0.047 Sum_probs=42.2
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+++||||........+.+.|....+...+....+ .++....+ ....+|.||+.-.. + .......+..+...
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~-~~~~~dlvl~d~~l--~-~~~~~~~~~~l~~~ 77 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASN---GEQGIELA-ESLDPDLILLDLNM--P-GMNGLETLDKLREK 77 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCC---HHHHHHHH-HhCCCCEEEEeCCC--C-CCcHHHHHHHHHHh
Confidence 457899999866566667677654333333222222 33333322 22568998883221 1 11123333333333
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
..+.|++-++
T Consensus 78 ~~~~~vi~l~ 87 (216)
T PRK10651 78 SLSGRIVVFS 87 (216)
T ss_pred CCCCcEEEEe
Confidence 3467777664
No 228
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=39.84 E-value=1.1e+02 Score=29.65 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=45.7
Q ss_pred cEEEEEECCCCc--------hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHH
Q 046651 5 VRTLLIDNYDSY--------TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGIC 76 (392)
Q Consensus 5 ~r~LlIDnyDSy--------T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~ 76 (392)
+||.|+-..+|- ...|.++|.+ .|.++++|..++..++.+ +...+|.|++.-+ |... .+ +..
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~-~g~~v~~i~~~~~~~~~~-----~~~~~D~v~~~~~-g~~~--~~-~~~ 74 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALRE-AGYDAHPIDPGEDIAAQL-----KELGFDRVFNALH-GRGG--ED-GTI 74 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHH-CCCEEEEEecCcchHHHh-----ccCCCCEEEEecC-CCCC--Cc-cHH
Confidence 478877644332 2568889988 799999886655433332 2257999998633 2111 12 122
Q ss_pred HHHHHHcCCCCEEEEc
Q 046651 77 LRVLLECWDVPILGVC 92 (392)
Q Consensus 77 ~~ll~~~~~iPILGVC 92 (392)
..++... ++|++|-.
T Consensus 75 ~~~le~~-gi~~~g~~ 89 (304)
T PRK01372 75 QGLLELL-GIPYTGSG 89 (304)
T ss_pred HHHHHHc-CCCccCCC
Confidence 3444445 88888864
No 229
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=39.76 E-value=48 Score=35.05 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=32.1
Q ss_pred HHHHHHH-cCCCCEEEEcHHHHHHH----HHhCCeeeecC-----CCceeceeEEEec-CCcccccCC
Q 046651 76 CLRVLLE-CWDVPILGVCLGHQALG----FVHGADIVHAP-----EPVHGRLSEIVHN-GDRLFHDIP 132 (392)
Q Consensus 76 ~~~ll~~-~~~iPILGVCLGhQ~La----~a~Gg~V~~ap-----ep~hG~~s~i~h~-g~~LF~~ip 132 (392)
.-..+.+ ...+.++|+|-|.|.+. ..+|..-.... -.+.++...+..+ |..++..+.
T Consensus 149 vt~~~~~~~~~~kviGlC~~~~~~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~ 216 (437)
T cd05298 149 VAEALRRLFPNARILNICDMPIAIMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLR 216 (437)
T ss_pred HHHHHHHHCCCCCEEEECCcHHHHHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHHHHH
Confidence 3344443 34789999999998654 44554221111 1244555556666 766655443
No 230
>PRK11173 two-component response regulator; Provisional
Probab=39.64 E-value=98 Score=28.17 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=43.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+++||||........+...|.. .|..+..... .++....+ ....+|.||+--. -|. ...+.++ +.+++.
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~-~g~~v~~~~~----~~~~~~~~-~~~~~dlvild~~--l~~-~~g~~~~-~~lr~~ 72 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEA-EGYDVFEATD----GAEMHQIL-SENDINLVIMDIN--LPG-KNGLLLA-RELREQ 72 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH-cCCEEEEECC----HHHHHHHH-hhCCCCEEEEcCC--CCC-CCHHHHH-HHHhcC
Confidence 46899999865666667777766 5766543322 23333322 2357999988322 121 1223333 334444
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
..+|++-+.
T Consensus 73 ~~~pii~lt 81 (237)
T PRK11173 73 ANVALMFLT 81 (237)
T ss_pred CCCCEEEEE
Confidence 478887664
No 231
>PRK15029 arginine decarboxylase; Provisional
Probab=39.54 E-value=1.1e+02 Score=34.80 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=44.7
Q ss_pred cEEEEEECCCC--------chHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc---h
Q 046651 5 VRTLLIDNYDS--------YTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED---I 73 (392)
Q Consensus 5 ~r~LlIDnyDS--------yT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d---~ 73 (392)
|||||||.... ....|.+.|+. .|.+++++.+ .++....+.....||.||+--. -|..... .
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~-~G~eV~~a~s----~~dAl~~l~~~~~~DlVLLD~~--LPd~dG~~~~~ 73 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQ-QNVTVIKSTS----FDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVR 73 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHHHhcCCCcEEEEECC--CCCCccchhHH
Confidence 79999997432 24455666665 6888766543 3455554422247999999522 2221111 1
Q ss_pred hHHHHHHHHcCCCCEEEEc
Q 046651 74 GICLRVLLECWDVPILGVC 92 (392)
Q Consensus 74 gi~~~ll~~~~~iPILGVC 92 (392)
.+|.++-+...++||+-+.
T Consensus 74 ell~~IR~~~~~iPIIlLT 92 (755)
T PRK15029 74 QLIGKLHERQQNVPVFLLG 92 (755)
T ss_pred HHHHHHHhhCCCCCEEEEE
Confidence 2333332223478988774
No 232
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=39.28 E-value=1.1e+02 Score=27.26 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=42.3
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+++|+||........+...|.. .|..+....+ .++....+ ....+|.||+... -|. ...+.++ +.+++..
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~-~~~~v~~~~~----~~~~~~~~-~~~~~dlvild~~--l~~-~~g~~~~-~~lr~~~ 72 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQ-EGYTVSEAAS----GAGMREIM-QNQHVDLILLDIN--LPG-EDGLMLT-RELRSRS 72 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-cCCEEEEECC----HHHHHHHH-hcCCCCEEEEeCC--CCC-CCHHHHH-HHHHhCC
Confidence 5899999865555566677766 5765443322 23333322 2356999998422 121 1122333 3344434
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+|++-+.
T Consensus 73 ~~~ii~l~ 80 (221)
T PRK10766 73 TVGIILVT 80 (221)
T ss_pred CCCEEEEE
Confidence 78887764
No 233
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=38.95 E-value=59 Score=35.47 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=29.8
Q ss_pred CCchHHHHHHHHHhCCCCeEEEe--CCCCCHHHHHhhhccc-CCcCEEEECCCC
Q 046651 14 DSYTYNIYQELSTINGVPPVVVR--NDEWTWRDICRYLYEE-NAFDNIVISPGP 64 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV~--nd~~~~eel~~~l~e~-~~fDgIVISpGP 64 (392)
|++++-|..++++ .|.+++.+. .|+ .+++...|-+. ..+|-||++||-
T Consensus 205 dsNs~~L~a~l~~-~G~~v~~~~iv~Dd--~e~i~~~l~~al~~~DlVIttGGt 255 (546)
T PRK14497 205 ESNLHYLYSKLKS-EGYKIVGLSLLSDD--KESIKNEIKRAISVADVLILTGGT 255 (546)
T ss_pred EhHHHHHHHHHHH-CCCEEEEEEEeCCC--HHHHHHHHHHhhhcCCEEEEcCCc
Confidence 4667778888887 788765432 233 34444433221 468999999874
No 234
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=38.82 E-value=1.1e+02 Score=27.21 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=41.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+++||||........+...|.. .|..+....+ .++....+ ....+|.||+.-.- |. ......+ +.+++..
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~~~~~~-~~~~~dlvild~~l--~~-~~g~~~~-~~lr~~~ 71 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEG-DGMRVFEAET----LQRGLLEA-ATRKPDLIILDLGL--PD-GDGIEFI-RDLRQWS 71 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-CCCEEEEeCC----HHHHHHHH-hcCCCCEEEEeCCC--CC-CCHHHHH-HHHHcCC
Confidence 5899999865555667777765 5765543322 22322222 22568999884221 11 1112222 3344445
Q ss_pred CCCEEEE
Q 046651 85 DVPILGV 91 (392)
Q Consensus 85 ~iPILGV 91 (392)
.+|++-+
T Consensus 72 ~~pvi~l 78 (225)
T PRK10529 72 AIPVIVL 78 (225)
T ss_pred CCCEEEE
Confidence 7888765
No 235
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=37.98 E-value=93 Score=32.69 Aligned_cols=63 Identities=21% Similarity=0.181 Sum_probs=35.6
Q ss_pred CCchHHHHHHHHHhCCCCeEEEe--CCCCCHHHHHhhhccc-CCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 14 DSYTYNIYQELSTINGVPPVVVR--NDEWTWRDICRYLYEE-NAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV~--nd~~~~eel~~~l~e~-~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
|++.+-|...|.+ .|.++.... .|+ .+++...|-+. ..+|.||+|||-+ .. +.....++|.+.
T Consensus 219 dsN~~~L~a~l~~-~G~~v~~~~~v~Dd--~~~i~~~l~~a~~~~DlIItTGG~S-~G---~~D~v~~~l~~~ 284 (419)
T PRK14690 219 DANRPMLLALARR-WGHAPVDLGRVGDD--RAALAARLDRAAAEADVILTSGGAS-AG---DEDHVSALLREA 284 (419)
T ss_pred eCHHHHHHHHHHH-CCCEEEEEeeeCCC--HHHHHHHHHHhCccCCEEEEcCCcc-CC---CcchHHHHHHhc
Confidence 5667778888888 788765332 232 33333332111 4689999987743 32 223455666554
No 236
>PRK15115 response regulator GlrR; Provisional
Probab=37.63 E-value=1e+02 Score=31.70 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=46.2
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+++||||........+...|+. .|..+....+ .++....+ ....+|.||+-.. -|. ...+..+..+...
T Consensus 4 ~~~~vLiVdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~eal~~l-~~~~~dlvilD~~--lp~-~~g~~ll~~l~~~ 74 (444)
T PRK15115 4 KPAHLLLVDDDPGLLKLLGMRLTS-EGYSVVTAES----GQEALRVL-NREKVDLVISDLR--MDE-MDGMQLFAEIQKV 74 (444)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH-CCCEEEEeCC----HHHHHHHH-hcCCCCEEEEcCC--CCC-CCHHHHHHHHHhc
Confidence 357999999876666677777776 6765543322 23443333 2356899888422 111 1223333333333
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
...+||+-++
T Consensus 75 ~~~~pvIvlt 84 (444)
T PRK15115 75 QPGMPVIILT 84 (444)
T ss_pred CCCCcEEEEE
Confidence 4578988876
No 237
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=37.62 E-value=19 Score=33.51 Aligned_cols=44 Identities=32% Similarity=0.478 Sum_probs=30.3
Q ss_pred CcCEEEECCCCCCCCCCCchhHHH---HHHHHcCCCCEEEEcHHHHHHHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICL---RVLLECWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~---~ll~~~~~iPILGVCLGhQ~La~a 101 (392)
+.|.|+++-||||.+- +.+.. +-|....++|+.||.- +++|+..
T Consensus 54 ~i~~iav~~GPGSfTG---lRig~~~akgla~~~~~p~~~vss-L~~lA~~ 100 (202)
T TIGR03725 54 DLDAIAVGVGPGSFTG---LRIGLATAKGLALALGIPLVGVSS-LEALAAQ 100 (202)
T ss_pred HCCEEEEecCCChHHh---HHHHHHHHHHHHHHhCCCEEecCH-HHHHHhh
Confidence 4799999999999874 22222 2222234999999985 6777654
No 238
>PRK13055 putative lipid kinase; Reviewed
Probab=37.60 E-value=1.3e+02 Score=30.21 Aligned_cols=62 Identities=23% Similarity=0.194 Sum_probs=36.9
Q ss_pred cEEEEEECCCCchHH-------HHHHHHHhCCCCeEEEeCC--CCCHHHHHhhhcccCCcCEEEECCCCCCCC
Q 046651 5 VRTLLIDNYDSYTYN-------IYQELSTINGVPPVVVRND--EWTWRDICRYLYEENAFDNIVISPGPGSPA 68 (392)
Q Consensus 5 ~r~LlIDnyDSyT~n-------l~q~L~~v~G~~pvVV~nd--~~~~eel~~~l~e~~~fDgIVISpGPGsp~ 68 (392)
+|++||-|.-|=... +...|.. .|.++.++.-. .-..+++..... +..+|.||+.||-|+..
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~~~~~~a~~~~~~~~-~~~~d~vvv~GGDGTl~ 73 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTTPEPNSAKNEAKRAA-EAGFDLIIAAGGDGTIN 73 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEeecCCccHHHHHHHHh-hcCCCEEEEECCCCHHH
Confidence 589999997654322 3344444 67776654322 123344333221 25689999999999853
No 239
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=37.35 E-value=1.8e+02 Score=27.01 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=35.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
|-|+|+|........+.+.|.. .+....++..-. +.+++...+ +...+|.||+-
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~-~~~~~~vv~~~~-~~~~~~~~~-~~~~pDlvLlD 54 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLS-RGVKKREINDIE-TVDDLAIAC-DSLRPSVVFIN 54 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHh-CCCcceEEEecC-CHHHHHHHH-hccCCCEEEEe
Confidence 6799999887777888888876 354444443322 356666543 44568998884
No 240
>PRK03670 competence damage-inducible protein A; Provisional
Probab=37.27 E-value=81 Score=30.86 Aligned_cols=49 Identities=29% Similarity=0.276 Sum_probs=29.3
Q ss_pred CCchHHHHHHHHHhCCCCeEEEe--CCCCCHHHHHhhhccc--CCcCEEEECCCCC
Q 046651 14 DSYTYNIYQELSTINGVPPVVVR--NDEWTWRDICRYLYEE--NAFDNIVISPGPG 65 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV~--nd~~~~eel~~~l~e~--~~fDgIVISpGPG 65 (392)
|++..-|.+.|.. .|.++..+. .|+ .+++...|-+. ..+|.||++||=|
T Consensus 19 dtN~~~la~~L~~-~G~~v~~~~iV~Dd--~~~I~~~l~~a~~~~~DlVIttGGlG 71 (252)
T PRK03670 19 DSNSAFIAQKLTE-KGYWVRRITTVGDD--VEEIKSVVLEILSRKPEVLVISGGLG 71 (252)
T ss_pred ehhHHHHHHHHHH-CCCEEEEEEEcCCC--HHHHHHHHHHHhhCCCCEEEECCCcc
Confidence 4555568888887 798764332 333 34444333221 3589999998854
No 241
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=37.13 E-value=86 Score=28.17 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=47.9
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchh-HHHHHHHH-cC
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIG-ICLRVLLE-CW 84 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~g-i~~~ll~~-~~ 84 (392)
+++||.+ +-++-+.++|... .+..||.|+-.-...+.. ...+ .|++.||--.+....-.| ...+.|++ .-
T Consensus 22 ~Ifld~G-tT~~~la~~L~~~--~~ltVvTnsl~ia~~l~~----~~~~-~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~ 93 (161)
T PF00455_consen 22 TIFLDSG-TTTLELAKYLPDK--KNLTVVTNSLPIANELSE----NPNI-EVILLGGEVNPKSLSFVGPIALEALRQFRF 93 (161)
T ss_pred EEEEECc-hHHHHHHHHhhcC--CceEEEECCHHHHHHHHh----cCce-EEEEeCCEEEcCCCcEECchHHHHHHhhcc
Confidence 6788873 6667888888763 278899998764444433 1233 455557765555433333 34455655 33
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
++=++|+|
T Consensus 94 d~afi~~~ 101 (161)
T PF00455_consen 94 DKAFIGAD 101 (161)
T ss_pred ceEEeccc
Confidence 77777776
No 242
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=36.46 E-value=1.7e+02 Score=27.09 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=35.4
Q ss_pred CCchHHHHHHHHH---hCCCCeEEEeCCCC----------------------CHHHHHhhhcccCCcCEEEECCCCCCCC
Q 046651 14 DSYTYNIYQELST---INGVPPVVVRNDEW----------------------TWRDICRYLYEENAFDNIVISPGPGSPA 68 (392)
Q Consensus 14 DSyT~nl~q~L~~---v~G~~pvVV~nd~~----------------------~~eel~~~l~e~~~fDgIVISpGPGsp~ 68 (392)
++.|.-+.+++.+ ..|+++++++-.+. +++++...| .++|+||+ |+|.
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l---~~aD~iI~----gsPv 85 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKL---LEADGIIF----GSPV 85 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHH---HHCCEEEE----eCCe
Confidence 4567665555432 25888877765432 245555545 56899999 6776
Q ss_pred CCCch-hHHHHHHHH
Q 046651 69 CPEDI-GICLRVLLE 82 (392)
Q Consensus 69 ~~~d~-gi~~~ll~~ 82 (392)
..... +....++..
T Consensus 86 y~g~vsa~~K~fiDR 100 (207)
T COG0655 86 YFGNVSAQMKAFIDR 100 (207)
T ss_pred ecCCchHHHHHHHhh
Confidence 54433 333344433
No 243
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=36.43 E-value=85 Score=30.98 Aligned_cols=34 Identities=41% Similarity=0.639 Sum_probs=24.5
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGh 95 (392)
..+|.||+-||-|+. ++..+. ..++||+||=+|+
T Consensus 54 ~~~d~ivvlGGDGtl---------L~~~~~~~~~~~pilgin~G~ 89 (281)
T COG0061 54 EKADLIVVLGGDGTL---------LRAARLLARLDIPVLGINLGH 89 (281)
T ss_pred cCceEEEEeCCcHHH---------HHHHHHhccCCCCEEEEeCCC
Confidence 468899998887763 344443 2379999999994
No 244
>PRK01215 competence damage-inducible protein A; Provisional
Probab=36.33 E-value=83 Score=30.96 Aligned_cols=80 Identities=16% Similarity=0.100 Sum_probs=41.0
Q ss_pred CCchHHHHHHHHHhCCCCeEEE--eCCCCCHHHHHhhhccc-CCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCCCEEE
Q 046651 14 DSYTYNIYQELSTINGVPPVVV--RNDEWTWRDICRYLYEE-NAFDNIVISPGPGSPACPEDIGICLRVLLECWDVPILG 90 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV--~nd~~~~eel~~~l~e~-~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~iPILG 90 (392)
|++.+-|.+.|.. .|+++..+ -.|+. +++...|-+. ...|-||+|||=| |+. .| +..+.+.+..+.++.+
T Consensus 22 dtn~~~l~~~L~~-~G~~v~~~~~v~Dd~--~~I~~~l~~a~~~~DlVIttGG~g-~t~-dD--~t~eaia~~~g~~l~~ 94 (264)
T PRK01215 22 NTNASWIARRLTY-LGYTVRRITVVMDDI--EEIVSAFREAIDRADVVVSTGGLG-PTY-DD--KTNEGFAKALGVELEL 94 (264)
T ss_pred EhhHHHHHHHHHH-CCCeEEEEEEeCCCH--HHHHHHHHHHhcCCCEEEEeCCCc-CCh-hh--hHHHHHHHHhCCCCCC
Confidence 4556668888888 79887432 23332 3333222111 3579999998754 321 23 3344444433455544
Q ss_pred EcHHHHHHHH
Q 046651 91 VCLGHQALGF 100 (392)
Q Consensus 91 VCLGhQ~La~ 100 (392)
.=--++.|-.
T Consensus 95 ~~e~~~~l~~ 104 (264)
T PRK01215 95 NEDALRMILE 104 (264)
T ss_pred CHHHHHHHHH
Confidence 4444444433
No 245
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=36.20 E-value=27 Score=30.43 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=50.0
Q ss_pred CCCchHHHHHHHHHhCCCCeE---EEeCCCCCHHHHHhhhccc-CCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCCCE
Q 046651 13 YDSYTYNIYQELSTINGVPPV---VVRNDEWTWRDICRYLYEE-NAFDNIVISPGPGSPACPEDIGICLRVLLECWDVPI 88 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~pv---VV~nd~~~~eel~~~l~e~-~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~iPI 88 (392)
+|++.+-|..+|++ .|.++. +++.|. +++...|.+. ...|.||++||-|-- ..| +..+.+.+....++
T Consensus 15 ~d~n~~~l~~~l~~-~G~~v~~~~~v~Dd~---~~i~~~l~~~~~~~D~VittGG~g~~--~~D--~t~~a~~~~~~~~l 86 (144)
T PF00994_consen 15 RDSNGPFLAALLEE-LGIEVIRYGIVPDDP---DAIKEALRRALDRADLVITTGGTGPG--PDD--VTPEALAEAGGREL 86 (144)
T ss_dssp EBHHHHHHHHHHHH-TTEEEEEEEEEESSH---HHHHHHHHHHHHTTSEEEEESSSSSS--TTC--HHHHHHHHHSSEE-
T ss_pred EEhHHHHHHHHHHH-cCCeeeEEEEECCCH---HHHHHHHHhhhccCCEEEEcCCcCcc--cCC--cccHHHHHhcCccc
Confidence 45667778888887 788764 455444 3343333211 457999999986531 123 34556665445566
Q ss_pred EEEcHHHHHHHHHhCC
Q 046651 89 LGVCLGHQALGFVHGA 104 (392)
Q Consensus 89 LGVCLGhQ~La~a~Gg 104 (392)
-|...=+..+....|.
T Consensus 87 ~~~~~~~~~~~~~pg~ 102 (144)
T PF00994_consen 87 PGFEELFRGVSMRPGK 102 (144)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred ccChHHHHHHHHHhhc
Confidence 6665666667766665
No 246
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=35.96 E-value=2.8e+02 Score=28.79 Aligned_cols=93 Identities=19% Similarity=0.232 Sum_probs=60.3
Q ss_pred CchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHHHHcCCCCEE---
Q 046651 15 SYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVLLECWDVPIL--- 89 (392)
Q Consensus 15 SyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll~~~~~iPIL--- 89 (392)
++++.....|....+.+ +++.. -.+.++....+ +..+|+|++|..-|+--. +..+..+.++.... ++||+
T Consensus 222 ~~~w~~i~~ir~~~~~p-viiKg-V~~~eda~~a~--~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~-~~~vi~dG 296 (361)
T cd04736 222 SFNWQDLRWLRDLWPHK-LLVKG-IVTAEDAKRCI--ELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT-YKPVLIDS 296 (361)
T ss_pred cCCHHHHHHHHHhCCCC-EEEec-CCCHHHHHHHH--HCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh-CCeEEEeC
Confidence 46777788887766654 45553 35677776543 257999999877665432 22344444544445 68988
Q ss_pred EEcHHHHHH-HHHhCCeeeecCCC
Q 046651 90 GVCLGHQAL-GFVHGADIVHAPEP 112 (392)
Q Consensus 90 GVCLGhQ~L-a~a~Gg~V~~apep 112 (392)
||..|.-++ +.++||..+-.-.|
T Consensus 297 GIr~g~Dv~KALaLGA~aV~iGr~ 320 (361)
T cd04736 297 GIRRGSDIVKALALGANAVLLGRA 320 (361)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHH
Confidence 788887655 56789988766443
No 247
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=35.81 E-value=1.7e+02 Score=30.51 Aligned_cols=59 Identities=12% Similarity=-0.005 Sum_probs=35.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCC-CHHHHHhh---hc------ccCCcCEEEECCCC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEW-TWRDICRY---LY------EENAFDNIVISPGP 64 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~-~~eel~~~---l~------e~~~fDgIVISpGP 64 (392)
+|+++|--+.|--..++++|.. .|.++.+...... ..+++... +. ....+|-||+|||-
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~-~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi 76 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLN-LGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAI 76 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHh-CCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCC
Confidence 5788888887777668888887 7888766533221 11222110 00 00358999999774
No 248
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=35.70 E-value=46 Score=34.35 Aligned_cols=51 Identities=22% Similarity=0.110 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhccc-CCcCEEEECCCCC
Q 046651 14 DSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEE-NAFDNIVISPGPG 65 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~-~~fDgIVISpGPG 65 (392)
|++.+.|..+|.+ .|.+++.+..-..+.+++...|-+. ..+|.||++||-+
T Consensus 194 dsn~~~l~~~l~~-~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s 245 (394)
T cd00887 194 DSNSYMLAALLRE-LGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVS 245 (394)
T ss_pred EChHHHHHHHHHH-CCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 5777788888888 6887654422222234444433221 3489999998854
No 249
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=35.24 E-value=1.3e+02 Score=27.18 Aligned_cols=60 Identities=23% Similarity=0.395 Sum_probs=35.7
Q ss_pred cEEEEEE-------------CCCCchHH-HHHHH---HHhCCCCeEEEeCCCCCHHHHHhhhcccC-CcCEEEECCCCCC
Q 046651 5 VRTLLID-------------NYDSYTYN-IYQEL---STINGVPPVVVRNDEWTWRDICRYLYEEN-AFDNIVISPGPGS 66 (392)
Q Consensus 5 ~r~LlID-------------nyDSyT~n-l~q~L---~~v~G~~pvVV~nd~~~~eel~~~l~e~~-~fDgIVISpGPGs 66 (392)
||+|||. -|++-|+. |-+.+ +.-.|+++.....+. -.++..++-+.. .+|+|||=||--+
T Consensus 1 m~IlvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~--EGelid~I~~a~~~~dgiIINpga~t 78 (140)
T PF01220_consen 1 MKILVINGPNLNLLGKREPEIYGTTTLEDIEQKCKETAAELGVEVEFFQSNH--EGELIDWIHEARDDVDGIIINPGAYT 78 (140)
T ss_dssp EEEEEEE-TTGGGTTTSSHHHHTSSHHHHHHHHHHHHHHHTTEEEEEEE-SS--HHHHHHHHHHHTCTTSEEEEE-GGGG
T ss_pred CEEEEEcCCCcccccCCCCCcCCcCCHHHHHHHHHHHHHHCCCeEEEEecCC--HHHHHHHHHHHHhhCCEEEEccchhc
Confidence 7888884 34455543 33333 333788888776654 356666665443 5999999766433
No 250
>PRK00549 competence damage-inducible protein A; Provisional
Probab=35.16 E-value=91 Score=32.64 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=30.0
Q ss_pred CCchHHHHHHHHHhCCCCeEEEe--CCCCCHHHHHhhhcc-cCCcCEEEECCCCC
Q 046651 14 DSYTYNIYQELSTINGVPPVVVR--NDEWTWRDICRYLYE-ENAFDNIVISPGPG 65 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV~--nd~~~~eel~~~l~e-~~~fDgIVISpGPG 65 (392)
|++.+-|.+.|.+ .|+++..+. .|+ .+++...+-+ ....|-||+|||-|
T Consensus 19 DtN~~~L~~~L~~-~G~~v~~~~~v~Dd--~~~I~~~l~~a~~~~DlVItTGGlG 70 (414)
T PRK00549 19 NTNAQFLSEKLAE-LGIDVYHQTVVGDN--PERLLSALEIAEERSDLIITTGGLG 70 (414)
T ss_pred EhhHHHHHHHHHH-CCCeEEEEEEeCCC--HHHHHHHHHHhccCCCEEEECCCCC
Confidence 5666778888888 798764332 333 2333333211 14689999998854
No 251
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=34.65 E-value=1.9e+02 Score=26.13 Aligned_cols=83 Identities=12% Similarity=0.096 Sum_probs=45.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVLL 81 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll~ 81 (392)
.|++||||........+.+.|........+.. .+. .+++...+ ....+|.|++--. -|.. ...+..+.++..
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~-~~~--~~~~~~~~-~~~~~DlvllD~~--l~~~~~~~g~~~~~~l~~ 76 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGE-FED--STALINNL-PKLDAHVLITDLS--MPGDKYGDGITLIKYIKR 76 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEE-ECC--HHHHHHHH-HhCCCCEEEEeCc--CCCCCCCCHHHHHHHHHH
Confidence 48999999987777788888876322233222 222 34444433 2256899888321 1211 122333344433
Q ss_pred HcCCCCEEEEc
Q 046651 82 ECWDVPILGVC 92 (392)
Q Consensus 82 ~~~~iPILGVC 92 (392)
....+||+-+.
T Consensus 77 ~~~~~~iIvls 87 (216)
T PRK10840 77 HFPSLSIIVLT 87 (216)
T ss_pred HCCCCcEEEEE
Confidence 34467887765
No 252
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=34.63 E-value=82 Score=32.19 Aligned_cols=45 Identities=29% Similarity=0.278 Sum_probs=28.2
Q ss_pred HHHHhhhcccCCcCEEEECCCCCCCCCCC----chhHHHHHHHHcCCCCEEEEcH
Q 046651 43 RDICRYLYEENAFDNIVISPGPGSPACPE----DIGICLRVLLECWDVPILGVCL 93 (392)
Q Consensus 43 eel~~~l~e~~~fDgIVISpGPGsp~~~~----d~gi~~~ll~~~~~iPILGVCL 93 (392)
.+....+ .+.|.|||+ ||||...- -+.-..+.|++. .-|+++||-
T Consensus 181 ~eaveAI---~~AD~IviG--PgSl~TSIlP~Lllp~I~eaLr~~-~ap~i~v~n 229 (323)
T COG0391 181 PEAVEAI---KEADLIVIG--PGSLFTSILPILLLPGIAEALRET-VAPIVYVCN 229 (323)
T ss_pred HHHHHHH---HhCCEEEEc--CCccHhhhchhhchhHHHHHHHhC-CCCEEEecc
Confidence 3444444 578999994 78887521 112234555554 889999993
No 253
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=34.47 E-value=3.4e+02 Score=29.20 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=57.7
Q ss_pred cEEEEEECCCC---chHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC---Cch-----
Q 046651 5 VRTLLIDNYDS---YTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP---EDI----- 73 (392)
Q Consensus 5 ~r~LlIDnyDS---yT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~---~d~----- 73 (392)
..++.||.-.. +....++.|.+....-+ ++--+-.+.++...+. +..+|.|.++-|||+.-.. .++
T Consensus 254 ~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~-v~aG~V~t~~~a~~~~--~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~ 330 (495)
T PTZ00314 254 VDVLVVDSSQGNSIYQIDMIKKLKSNYPHVD-IIAGNVVTADQAKNLI--DAGADGLRIGMGSGSICITQEVCAVGRPQA 330 (495)
T ss_pred CCEEEEecCCCCchHHHHHHHHHHhhCCCce-EEECCcCCHHHHHHHH--HcCCCEEEECCcCCcccccchhccCCCChH
Confidence 56777887433 34456666666432223 2323344566655433 2578999998888863111 111
Q ss_pred ---hHHHHHHHHcCCCCEEE---EcH-HHHHHHHHhCCeeeecCCC
Q 046651 74 ---GICLRVLLECWDVPILG---VCL-GHQALGFVHGADIVHAPEP 112 (392)
Q Consensus 74 ---gi~~~ll~~~~~iPILG---VCL-GhQ~La~a~Gg~V~~apep 112 (392)
..+.++.++. ++|++. |-- |.-+-|.++||..+-.-..
T Consensus 331 ~ai~~~~~~~~~~-~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 331 SAVYHVARYARER-GVPCIADGGIKNSGDICKALALGADCVMLGSL 375 (495)
T ss_pred HHHHHHHHHHhhc-CCeEEecCCCCCHHHHHHHHHcCCCEEEECch
Confidence 1122333333 789885 444 4446677799998876443
No 254
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=34.46 E-value=1.5e+02 Score=26.92 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=41.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+++||||........+...|.. .|..+....+ .++....+ +...+|.||+--. -|. ...+.. .+.+++..
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~-~g~~v~~~~~----~~~~l~~~-~~~~~dlvild~~--l~~-~~g~~~-~~~ir~~~ 71 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAK-HDIDVTVEPR----GDRAEATI-LREQPDLVLLDIM--LPG-KDGMTI-CRDLRPKW 71 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHH-cCCEEEEeCC----HHHHHHHH-hhCCCCEEEEeCC--CCC-CCHHHH-HHHHHhcC
Confidence 4899999765555566677765 6766654432 23333322 2357899988321 121 111222 23444434
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
..|++-+.
T Consensus 72 ~~pii~l~ 79 (240)
T PRK10701 72 QGPIVLLT 79 (240)
T ss_pred CCCEEEEE
Confidence 67877554
No 255
>PRK13558 bacterio-opsin activator; Provisional
Probab=34.37 E-value=1e+02 Score=33.39 Aligned_cols=81 Identities=10% Similarity=0.010 Sum_probs=44.9
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..|||||||........+...|.. .|..+....+ .++....+ +...+|.||+-.. -|. ..-+..+..+-..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~l~~-~~~~v~~~~~----~~~al~~~-~~~~~Dlvl~d~~--lp~-~~g~~~l~~l~~~ 76 (665)
T PRK13558 6 PTRGVLFVGDDPEAGPVDCDLDED-GRLDVTQIRD----FVAARDRV-EAGEIDCVVADHE--PDG-FDGLALLEAVRQT 76 (665)
T ss_pred cceeEEEEccCcchHHHHHHHhhc-cCcceEeeCC----HHHHHHHh-hccCCCEEEEecc--CCC-CcHHHHHHHHHhc
Confidence 358999999876666666666654 5665443322 23443333 2356899988322 221 1122333343222
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
..++||+-+.
T Consensus 77 ~~~~piI~lt 86 (665)
T PRK13558 77 TAVPPVVVVP 86 (665)
T ss_pred CCCCCEEEEE
Confidence 4578988885
No 256
>PRK09191 two-component response regulator; Provisional
Probab=34.31 E-value=1.2e+02 Score=28.13 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=43.5
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+++||||+...+...+-..|+. .|..++....+ .++....+ ....+|.||+.-. .|....-+..+..+....
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~-~~~~~~~~~~~---~~~~l~~l-~~~~~dlvi~d~~--~~~~~~g~e~l~~l~~~~- 209 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVES-LGHRVTGIART---RAEAVALA-KKTRPGLILADIQ--LADGSSGIDAVNDILKTF- 209 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhc-CCCEEEEEECC---HHHHHHHH-hccCCCEEEEecC--CCCCCCHHHHHHHHHHhC-
Confidence 5799999876667677777765 57655422222 12222222 2256999999532 221111233333443334
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+|++-+.
T Consensus 210 ~~pii~ls 217 (261)
T PRK09191 210 DVPVIFIT 217 (261)
T ss_pred CCCEEEEe
Confidence 78988653
No 257
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=34.18 E-value=1.7e+02 Score=27.23 Aligned_cols=82 Identities=7% Similarity=0.087 Sum_probs=41.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhc-ccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLY-EENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~-e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
|++||||........+...|....|...+....+ .++....+. ....+|.|++--. -|. ..-+..+..+....
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~DlvilD~~--~p~-~~G~eli~~l~~~~ 75 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTAST---LEQAKEIIFNSDTPIDLILLDIY--MQQ-ENGLDLLPVLHEAG 75 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCC---HHHHHHHHHhcCCCCCEEEEecC--CCC-CCcHHHHHHHHhhC
Confidence 6899999876666566677765445544322222 233333221 1245898888321 121 11233333333223
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
.++||+-+.
T Consensus 76 ~~~~vI~ls 84 (239)
T PRK10430 76 CKSDVIVIS 84 (239)
T ss_pred CCCCEEEEE
Confidence 467877664
No 258
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=34.02 E-value=2e+02 Score=22.94 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCCeE-EEeCCCCCHHHHHhhhcccCCcCEEEECCCC-CCCCCCCchhHHHHHHHHcCCCCEE
Q 046651 20 IYQELSTINGVPPV-VVRNDEWTWRDICRYLYEENAFDNIVISPGP-GSPACPEDIGICLRVLLECWDVPIL 89 (392)
Q Consensus 20 l~q~L~~v~G~~pv-VV~nd~~~~eel~~~l~e~~~fDgIVISpGP-Gsp~~~~d~gi~~~ll~~~~~iPIL 89 (392)
-++.|++ +|+++. ++..-......+...+ ....+|.||-.+.| +.-. ..|--.+++...+. +||.+
T Consensus 22 Ta~~L~~-~Gi~~~~~~~ki~~~~~~i~~~i-~~g~id~VIn~~~~~~~~~-~~d~~~iRr~A~~~-~Ip~~ 89 (90)
T smart00851 22 TAKFLRE-AGLPVKTLHPKVHGGILAILDLI-KNGEIDLVINTLYPLGAQP-HEDGKALRRAAENI-DIPGA 89 (90)
T ss_pred HHHHHHH-CCCcceeccCCCCCCCHHHHHHh-cCCCeEEEEECCCcCccee-ccCcHHHHHHHHHc-CCCee
Confidence 3567777 798864 3322111122333333 45889999998876 3322 22222334444344 88864
No 259
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=33.74 E-value=1.3e+02 Score=29.95 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=44.1
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
||+||+|....+...+-+.|....|..++..-.+ .++....+ +...+|.|++--. -|. ..-+..+.+ +++..
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~---~~eal~~l-~~~~pDlVllD~~--mp~-~~G~e~l~~-l~~~~ 72 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATD---GAQAVERC-AAQPPDVILMDLE--MPR-MDGVEATRR-IMAER 72 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECC---HHHHHHHH-hccCCCEEEEcCC--CCC-CCHHHHHHH-HHHHC
Confidence 6899999754455556666644456655433222 23333322 3357899988311 121 122333333 33334
Q ss_pred CCCEEEEcHH
Q 046651 85 DVPILGVCLG 94 (392)
Q Consensus 85 ~iPILGVCLG 94 (392)
.+|++-++-.
T Consensus 73 ~~pvivvs~~ 82 (337)
T PRK12555 73 PCPILIVTSL 82 (337)
T ss_pred CCcEEEEeCC
Confidence 7999988854
No 260
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=33.30 E-value=1.7e+02 Score=24.87 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=41.8
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
+..++||+|........+.+.|.. .|..+..+.+ .++....+ ....+|.|++-... +. ...+..+ +.+++
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~-~~~~v~~~~~----~~~~~~~~-~~~~~d~ii~d~~~--~~-~~~~~~~-~~l~~ 71 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDS-AGFEVRLFES----AQAFLDAL-PGLRFGCVVTDVRM--PG-IDGIELL-RRLKA 71 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH-CCCeEEEeCC----HHHHHHHh-ccCCCCEEEEeCCC--CC-CcHHHHH-HHHHh
Confidence 346899999865555566677765 5766544322 23333222 23568888884221 11 1222322 33333
Q ss_pred -cCCCCEEEEc
Q 046651 83 -CWDVPILGVC 92 (392)
Q Consensus 83 -~~~iPILGVC 92 (392)
...+|++-+.
T Consensus 72 ~~~~~~ii~l~ 82 (202)
T PRK09390 72 RGSPLPVIVMT 82 (202)
T ss_pred cCCCCCEEEEE
Confidence 3467777654
No 261
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=33.13 E-value=1.1e+02 Score=34.32 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=46.9
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhccc-CCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEE-NAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~-~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..++||||........+-..|+. .|.+++.+.+ .++....+.+. ..||.|++ . -|. ......+..+-..
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~-~G~~v~~~~s----~~~al~~l~~~~~~~DlVll-~---~~~-~~g~~l~~~l~~~ 766 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAA-LGYEPVGFST----LAAAIAWISKGPERFDLVLV-D---DRL-LDEEQAAAALHAA 766 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHH-CCCEEEEeCC----HHHHHHHHHhCCCCceEEEE-C---CCC-CCHHHHHHHHHhh
Confidence 36899999866666666677776 7988866543 23344433221 23788888 1 121 1233333333323
Q ss_pred cCCCCEEEEcHH
Q 046651 83 CWDVPILGVCLG 94 (392)
Q Consensus 83 ~~~iPILGVCLG 94 (392)
...+||+-++-.
T Consensus 767 ~~~ipIIvls~~ 778 (828)
T PRK13837 767 APTLPIILGGNS 778 (828)
T ss_pred CCCCCEEEEeCC
Confidence 458898888753
No 262
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=32.59 E-value=92 Score=33.09 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=59.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
.|||+||-.-.--.+|-+.|.. .|..+++..+ +++....+ ++..||-|++. -.-....-+.+|.++-..
T Consensus 133 ~kILvvdD~~~~~~~l~~~L~~-~g~~v~~a~~----~~~Al~~~-~e~~~dlil~d---~~mp~~dg~el~~~lr~~~~ 203 (435)
T COG3706 133 KKILVVDDDATQRERLRRILQV-EGFRVVEATD----GEEALLQL-AELPPDLVLLD---ANMPDMDGLELCTRLRQLER 203 (435)
T ss_pred ceEEEEcCcHHHHHHHHHHHHh-ccceeeeecC----HHHHHHHH-hcCCCcEEEEe---cCCCccCHHHHHHHHhcccc
Confidence 5899999765556678888876 6877766543 44554444 33589999994 222222345666655443
Q ss_pred cCCCCEEEEcH----HHHHHHHHhCCeeeecC
Q 046651 83 CWDVPILGVCL----GHQALGFVHGADIVHAP 110 (392)
Q Consensus 83 ~~~iPILGVCL----GhQ~La~a~Gg~V~~ap 110 (392)
...+||+.+-- ..+.-|...|+.=.-..
T Consensus 204 t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~k 235 (435)
T COG3706 204 TRDIPIILLSSKDDDELVVRAFELGVNDYITK 235 (435)
T ss_pred cccccEEEEecccchHHHHHHHHcCCcceEec
Confidence 35899999864 33445555566544444
No 263
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.29 E-value=2.8e+02 Score=22.56 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=49.0
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEE---eCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVV---RNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV---~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
+||||-..+.+..++-+.+.+ .|...... ..+...-..+...+ ...|.||+--+--+- ..+..+-+.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~-~G~~~~~hg~~~~~~~~~~~l~~~i---~~aD~VIv~t~~vsH------~~~~~vk~~ 70 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEK-YGGKLIHHGRDGGDEKKASRLPSKI---KKADLVIVFTDYVSH------NAMWKVKKA 70 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHH-cCCEEEEEecCCCCccchhHHHHhc---CCCCEEEEEeCCcCh------HHHHHHHHH
Confidence 478887767788888888888 78888777 22222112355544 667999995433222 122222222
Q ss_pred --cCCCCEEEEc-HHHHHHHH
Q 046651 83 --CWDVPILGVC-LGHQALGF 100 (392)
Q Consensus 83 --~~~iPILGVC-LGhQ~La~ 100 (392)
..++|+.=+= .|...|..
T Consensus 71 akk~~ip~~~~~~~~~~~l~~ 91 (97)
T PF10087_consen 71 AKKYGIPIIYSRSRGVSSLER 91 (97)
T ss_pred HHHcCCcEEEECCCCHHHHHH
Confidence 2488987543 44444433
No 264
>PRK10116 universal stress protein UspC; Provisional
Probab=32.06 E-value=1.6e+02 Score=24.65 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=33.4
Q ss_pred CCCCe--EEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCCCEEEE
Q 046651 28 NGVPP--VVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWDVPILGV 91 (392)
Q Consensus 28 ~G~~p--vVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~iPILGV 91 (392)
.|.+. +++.... .++.+..+. ++..+|-||+ |..|...-..-.....++++.+ +.|||-|
T Consensus 76 ~~~~~~~~~~~~G~-~~~~I~~~a-~~~~~DLiV~-g~~~~~~~~~~~s~a~~v~~~~-~~pVLvv 137 (142)
T PRK10116 76 ADYPIEKTFIAYGE-LSEHILEVC-RKHHFDLVIC-GNHNHSFFSRASCSAKRVIASS-EVDVLLV 137 (142)
T ss_pred cCCCeEEEEEecCC-HHHHHHHHH-HHhCCCEEEE-cCCcchHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 56554 3443333 367777654 4568999999 2222211111123445777766 8899865
No 265
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=31.77 E-value=1.9e+02 Score=25.14 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=41.2
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
..++||||........+-+.|....+..++....+ .++....+ ....+|-||+--. -|. ......+..+-...
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~-~~~~~dlvild~~--l~~-~~g~~~~~~l~~~~ 75 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDD---YRITIDYL-RTRPVDLIIMDID--LPG-TDGFTFLKRIKQIQ 75 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCC---HHHHHHHH-HhcCCCEEEEeCC--CCC-CCHHHHHHHHHHhC
Confidence 46799999876666667777765324444322222 22332222 2256899888322 121 11233333332223
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
..+|++-+-
T Consensus 76 ~~~~ii~ls 84 (210)
T PRK09935 76 STVKVLFLS 84 (210)
T ss_pred CCCcEEEEE
Confidence 467776653
No 266
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=31.68 E-value=1.7e+02 Score=29.88 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=43.8
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
+.+++||||.....-..+-..|.. .|..+..+.+ .++....+ ....+|-|++--. -|. ..-+.++..+-..
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~al~~l-~~~~~DlvilD~~--m~~-~~G~~~~~~ir~~ 74 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRG-WGYNVALANS----GRQALEQV-REQVFDLVLCDVR--MAE-MDGIATLKEIKAL 74 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHH-CCCeEEEeCC----HHHHHHHH-hcCCCCEEEEeCC--CCC-CCHHHHHHHHHhh
Confidence 568999999865555566677765 5765544322 33443333 2356888888321 111 1122222222222
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
..+.||+-++
T Consensus 75 ~~~~~vi~lt 84 (441)
T PRK10365 75 NPAIPVLIMT 84 (441)
T ss_pred CCCCeEEEEE
Confidence 3478888776
No 267
>PRK13054 lipid kinase; Reviewed
Probab=30.86 E-value=1.4e+02 Score=29.18 Aligned_cols=63 Identities=19% Similarity=0.077 Sum_probs=37.9
Q ss_pred ccEEEEEECCCCchH----HHHHHHHHhCCCCeEEEeCCC-CCHHHHHhhhcccCCcCEEEECCCCCCCC
Q 046651 4 FVRTLLIDNYDSYTY----NIYQELSTINGVPPVVVRNDE-WTWRDICRYLYEENAFDNIVISPGPGSPA 68 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~----nl~q~L~~v~G~~pvVV~nd~-~~~eel~~~l~e~~~fDgIVISpGPGsp~ 68 (392)
.||++||-|.-+-.. .+...|.+ .|.++.+..... ....++..... ...+|.||+.||-|+..
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~-~g~~~~v~~t~~~~~a~~~a~~~~-~~~~d~vvv~GGDGTl~ 70 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLRE-EGHTLHVRVTWEKGDAARYVEEAL-ALGVATVIAGGGDGTIN 70 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHH-cCCEEEEEEecCCCcHHHHHHHHH-HcCCCEEEEECCccHHH
Confidence 357899999665322 23444554 688776554322 23444433222 25689999999999864
No 268
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=30.41 E-value=2.1e+02 Score=30.52 Aligned_cols=59 Identities=20% Similarity=0.062 Sum_probs=36.2
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCC--HHHH-------Hhhh-----cccCCcCEEEECCCC
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWT--WRDI-------CRYL-----YEENAFDNIVISPGP 64 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~--~eel-------~~~l-----~e~~~fDgIVISpGP 64 (392)
.|+|+|+-.+-|- ..+++.|.+ .|.++.|...++.. .++. ...+ .....+|-||+|||-
T Consensus 7 ~~kv~V~GLG~sG-~a~a~~L~~-~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi 79 (448)
T COG0771 7 GKKVLVLGLGKSG-LAAARFLLK-LGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGI 79 (448)
T ss_pred CCEEEEEeccccc-HHHHHHHHH-CCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCC
Confidence 4789999886554 578888988 79888776533322 0011 0000 012468999999773
No 269
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=30.31 E-value=1.7e+02 Score=30.25 Aligned_cols=81 Identities=11% Similarity=0.151 Sum_probs=45.3
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
...++||||....+-..+-..|.. .|..++.+.+ .++....+ +...+|.||+--. -|. ...+..+..+-..
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~-~g~~v~~~~s----~~~al~~l-~~~~~DlvllD~~--lp~-~dgl~~l~~ir~~ 72 (469)
T PRK10923 2 QRGIVWVVDDDSSIRWVLERALAG-AGLTCTTFEN----GNEVLEAL-ASKTPDVLLSDIR--MPG-MDGLALLKQIKQR 72 (469)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH-cCCEEEEECC----HHHHHHHH-hcCCCCEEEECCC--CCC-CCHHHHHHHHHhh
Confidence 346899999866666667777776 6766543322 33443333 3356898887311 121 1223333333323
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
...+|++-++
T Consensus 73 ~~~~pvIvlt 82 (469)
T PRK10923 73 HPMLPVIIMT 82 (469)
T ss_pred CCCCeEEEEE
Confidence 4578888886
No 270
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=29.98 E-value=2.5e+02 Score=21.29 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=31.0
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
+.|+++++|........+...|.. .|...+....+. ++....+ ....+|-+++.
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~---~~~~~~~-~~~~~di~l~d 57 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKE-LGFNNVEEAEDG---VDALNKL-QAGGFGFVISD 57 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHH-cCCCeEEEeCCH---HHHHHHh-hccCCCEEEEc
Confidence 468999999765666667777765 566433222221 2222222 22568888874
No 271
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=29.88 E-value=1.6e+02 Score=27.45 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCCe---EEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCC
Q 046651 19 NIYQELSTINGVPP---VVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67 (392)
Q Consensus 19 nl~q~L~~v~G~~p---vVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp 67 (392)
-|.++|.+ .|.++ ++|+.+..........+.++. +|.||.+||=|=-
T Consensus 31 ~l~~~L~~-ag~~~~~~~iV~D~~~~I~~~l~~~~~~~-~DvvlttGGTG~t 80 (169)
T COG0521 31 LLVELLEE-AGHNVAAYTIVPDDKEQIRATLIALIDED-VDVVLTTGGTGIT 80 (169)
T ss_pred HHHHHHHH-cCCccceEEEeCCCHHHHHHHHHHHhcCC-CCEEEEcCCccCC
Confidence 36666666 67665 555555432322222222334 9999999998743
No 272
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=29.75 E-value=3.8e+02 Score=28.27 Aligned_cols=102 Identities=18% Similarity=0.278 Sum_probs=57.3
Q ss_pred cEEEEEECCCCchHHHH---HHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC---chh----
Q 046651 5 VRTLLIDNYDSYTYNIY---QELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE---DIG---- 74 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~---q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~---d~g---- 74 (392)
..++.||.-...+.++. +.|+....--++++-+ -.+.++...++ + ..+|.|.++-|||+..... .++
T Consensus 237 ~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~-v~t~~~a~~l~-~-aGad~i~vg~g~G~~~~t~~~~~~g~p~~ 313 (450)
T TIGR01302 237 VDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGN-VATAEQAKALI-D-AGADGLRVGIGPGSICTTRIVAGVGVPQI 313 (450)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEe-CCCHHHHHHHH-H-hCCCEEEECCCCCcCCccceecCCCccHH
Confidence 56788887444444444 4444422222334433 33567665543 2 5789999988998643211 111
Q ss_pred -H---HHHHHHHcCCCCEEE---Ec-HHHHHHHHHhCCeeeecC
Q 046651 75 -I---CLRVLLECWDVPILG---VC-LGHQALGFVHGADIVHAP 110 (392)
Q Consensus 75 -i---~~~ll~~~~~iPILG---VC-LGhQ~La~a~Gg~V~~ap 110 (392)
. +.++..+. ++||+. |= -|.-+-|.++||..+-.-
T Consensus 314 ~~i~~~~~~~~~~-~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 314 TAVYDVAEYAAQS-GIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred HHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 1 22223223 899986 43 455567788999887763
No 273
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=29.65 E-value=41 Score=32.90 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=24.9
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGh 95 (392)
..+|.||.-||-|+. ++.++. ..++|||||=.|+
T Consensus 24 ~~~Dlvi~iGGDGTl---------L~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 24 EEADVIVALGGDGFM---------LQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred ccCCEEEEECCCHHH---------HHHHHHhcCCCCeEEEEeCCC
Confidence 347888888998863 444444 2489999999986
No 274
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=29.56 E-value=1.3e+02 Score=34.60 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=44.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
.+|+||||.......-+...|.. .|..+....+-. +....+ ....||.|++-- .-|. ..-+.. .+.+++
T Consensus 801 ~~~ILvVdD~~~~~~~l~~~L~~-~G~~v~~a~~g~----eal~~l-~~~~~DlVl~D~--~mP~-mdG~el-~~~ir~~ 870 (924)
T PRK10841 801 DMMILVVDDHPINRRLLADQLGS-LGYQCKTANDGV----DALNVL-SKNHIDIVLTDV--NMPN-MDGYRL-TQRLRQL 870 (924)
T ss_pred CCEEEEECCCHHHHHHHHHHHHH-cCCEEEEECCHH----HHHHHH-HhCCCCEEEEcC--CCCC-CCHHHH-HHHHHhc
Confidence 47899999654444456677766 788766554432 222222 236799998821 1121 112232 344444
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
...+||+++.-
T Consensus 871 ~~~~pII~lTa 881 (924)
T PRK10841 871 GLTLPVIGVTA 881 (924)
T ss_pred CCCCCEEEEEC
Confidence 34799998853
No 275
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=29.43 E-value=2.8e+02 Score=25.68 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=39.5
Q ss_pred cEEEEEEC---CCCchHHHHHHHHHh---CCCCeEEEeCCCC-------------CHHHHHhhhcccCCcCEEEECCCCC
Q 046651 5 VRTLLIDN---YDSYTYNIYQELSTI---NGVPPVVVRNDEW-------------TWRDICRYLYEENAFDNIVISPGPG 65 (392)
Q Consensus 5 ~r~LlIDn---yDSyT~nl~q~L~~v---~G~~pvVV~nd~~-------------~~eel~~~l~e~~~fDgIVISpGPG 65 (392)
|||++|-- -.|+|..|.+.+.+. .|.+++++.-.+. .++++...+ .+.|+||| +
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i---~~AD~iIi----~ 73 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQL---AQADGLIV----A 73 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHH---HHCCEEEE----E
Confidence 78888854 357887776666432 5777766533221 222333333 56899999 6
Q ss_pred CCCCCC-chhHHHHHHH
Q 046651 66 SPACPE-DIGICLRVLL 81 (392)
Q Consensus 66 sp~~~~-d~gi~~~ll~ 81 (392)
+|.--. --+.+..+|.
T Consensus 74 tP~Y~~s~pg~LKn~iD 90 (191)
T PRK10569 74 TPVYKASFSGALKTLLD 90 (191)
T ss_pred CCccCCCCCHHHHHHHH
Confidence 774322 2244444443
No 276
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=29.22 E-value=2.1e+02 Score=28.02 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=34.4
Q ss_pred cCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCC
Q 046651 55 FDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEP 112 (392)
Q Consensus 55 fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep 112 (392)
--.+|+.||---|++..--++.-+.|.. .++--.||||-| -.+|...+..-+|
T Consensus 50 T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG-----~YFg~~~veF~~p 104 (253)
T COG4285 50 TLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAG-----GYFGSAYVEFAEP 104 (253)
T ss_pred eEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEecc-----ccccceEEEEecC
Confidence 3478887776667664433333333433 247789999998 4678888777666
No 277
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=29.01 E-value=1.7e+02 Score=24.44 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=26.3
Q ss_pred CchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 15 SYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 15 SyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
.+|..+++.|++. .|+++.++.-++.+..++ ..+|.|||
T Consensus 10 GnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l-------~~~d~iil 51 (140)
T TIGR01753 10 GNTEEMANIIAEGLKEAGAEVDLLEVADADAEDL-------LSYDAVLL 51 (140)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHH-------hcCCEEEE
Confidence 3455677776654 477787777666555555 34899999
No 278
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=28.79 E-value=1.7e+02 Score=29.26 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=43.0
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+|+||||....+...+...|....|..++....+ .++....+ +...+|.|++-. .-|. ...+..+.++ ++
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~---~~~al~~~-~~~~~DlVllD~--~mp~-~dgle~l~~i-~~ 73 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPD---GLEAREKI-KKLNPDVITLDV--EMPV-MDGLDALEKI-MR 73 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC---HHHHHHHH-hhhCCCEEEEeC--CCCC-CChHHHHHHH-HH
Confidence 457999999754445456666665335555422222 22332222 235689888831 1121 1223333333 33
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
...+|++-++-
T Consensus 74 ~~~~piIvls~ 84 (354)
T PRK00742 74 LRPTPVVMVSS 84 (354)
T ss_pred hCCCCEEEEec
Confidence 33599998873
No 279
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=28.61 E-value=2.3e+02 Score=23.85 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=30.5
Q ss_pred cEEEEEECCCCchHHHHHHHHH---hCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 5 VRTLLIDNYDSYTYNIYQELST---INGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~---v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
.+|||+-....-|--+.+.+.+ -.|.+..+.... ..++...+ ..+|.|+++
T Consensus 1 ~~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~---~~e~~~~~---~~~Dvill~ 54 (99)
T cd05565 1 LNVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGA---YGSHYDMI---PDYDLVILA 54 (99)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEee---HHHHHHhc---cCCCEEEEc
Confidence 3678887655333334443333 278888766543 44555544 689988884
No 280
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.49 E-value=91 Score=30.88 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=24.1
Q ss_pred CcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGh 95 (392)
.+|.||.-||-|+. ++..+. ..++|||||=+|+
T Consensus 42 ~~d~vi~iGGDGT~---------L~aa~~~~~~~~PilgIn~G~ 76 (272)
T PRK02231 42 RAQLAIVIGGDGNM---------LGRARVLAKYDIPLIGINRGN 76 (272)
T ss_pred CCCEEEEECCcHHH---------HHHHHHhccCCCcEEEEeCCC
Confidence 57999888998863 344443 2389999999884
No 281
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=28.31 E-value=1.9e+02 Score=25.75 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=42.4
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-CCchhHHHHHHHH-c
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-PEDIGICLRVLLE-C 83 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~~d~gi~~~ll~~-~ 83 (392)
++||||....+...+...|.. .|..++...+ -++....+ ....+|.||+--.. |.. ...... .+.++. .
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~-~~~~v~~~~~----~~~~~~~~-~~~~~dlvild~~l--~~~~~~g~~~-~~~i~~~~ 72 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKR-QGYQVTTYAD----RPSAMQAF-RQRLPDLAIIDIGL--GEEIDGGFML-CQDLRSLS 72 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHH-CCcEEEEecC----HHHHHHHH-HhCCCCEEEEECCC--CCCCCCHHHH-HHHHHhcC
Confidence 689999866666677788876 6776554332 23333322 22569999984221 211 011222 233333 2
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
..+|++-+.
T Consensus 73 ~~~pii~ls 81 (227)
T TIGR03787 73 ATLPIIFLT 81 (227)
T ss_pred CCCCEEEEE
Confidence 468887664
No 282
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=28.16 E-value=95 Score=31.47 Aligned_cols=50 Identities=20% Similarity=0.174 Sum_probs=31.5
Q ss_pred CCCchHHHHHHHHHhCCCCeEEEe--CCCCCHHHHHhhhccc--CCcCEEEECCCCC
Q 046651 13 YDSYTYNIYQELSTINGVPPVVVR--NDEWTWRDICRYLYEE--NAFDNIVISPGPG 65 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~pvVV~--nd~~~~eel~~~l~e~--~~fDgIVISpGPG 65 (392)
+|+..+.|..+|.+ .|.+++.+. .|+ .+.+...+-+. ..+|.||.+||-|
T Consensus 173 ~Dsn~~~L~~~L~~-~G~~v~~~~iVpDD--~~~I~~al~~a~~~~~DlIITTGGtg 226 (312)
T PRK03604 173 EDRSGKLIVEGLEE-AGFEVSHYTIIPDE--PAEIAAAVAAWIAEGYALIITTGGTG 226 (312)
T ss_pred EEhHHHHHHHHHHH-CCCEEEEEEEcCCC--HHHHHHHHHHhhhCCCCEEEECCCCC
Confidence 35666778888888 798775433 333 34444433222 4689999998855
No 283
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=27.86 E-value=1.7e+02 Score=29.93 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=43.0
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
-++||||........+...|.. .|..++.+.+ .++....+ ....+|.|++-- .-|. ...+..+..+.....
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~al~~l-~~~~~dlillD~--~~p~-~~g~~ll~~i~~~~~ 75 (457)
T PRK11361 5 NRILIVDDEDNVRRMLSTAFAL-QGFETHCANN----GRTALHLF-ADIHPDVVLMDI--RMPE-MDGIKALKEMRSHET 75 (457)
T ss_pred CeEEEEECCHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHH-hcCCCCEEEEeC--CCCC-CCHHHHHHHHHhcCC
Confidence 4789999865556566677766 5766544322 33333322 235688888731 1121 122333333333345
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+|++.+.
T Consensus 76 ~~pvI~lt 83 (457)
T PRK11361 76 RTPVILMT 83 (457)
T ss_pred CCCEEEEe
Confidence 78988775
No 284
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=27.72 E-value=1.3e+02 Score=30.95 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=37.8
Q ss_pred EEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCC
Q 046651 8 LLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67 (392)
Q Consensus 8 LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp 67 (392)
+||=..|.+ .+-+++-+++...+++++-+++..+...+..++ +...|.|+|=|||-..
T Consensus 30 ~VIlvsDn~aD~~lA~~iaellNA~Vlttpwg~ynes~~~eI~--~lnpd~VLIIGGp~AV 88 (337)
T COG2247 30 VVILVSDNEADLLLALPIAELLNAPVLTTPWGIYNESVLDEII--ELNPDLVLIIGGPIAV 88 (337)
T ss_pred EEEEecchHHHHHHhhHHHHHhCCeeEecCcccccHHHHHHHH--hhCCceEEEECCCCcC
Confidence 555555665 566888899888888875565655433222221 1679999999998543
No 285
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=27.65 E-value=1.8e+02 Score=26.76 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=31.9
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
.+++||+|........+...|....|...+..-.+ .++....+ +...+|.||+-
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~---~~~al~~~-~~~~pdlvllD 57 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGN---LAQARMMI-ERFKPGLILLD 57 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECC---HHHHHHHH-HhcCCCEEEEe
Confidence 37899999876666667777765445544333222 22333222 22568999983
No 286
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=27.29 E-value=2.6e+02 Score=25.70 Aligned_cols=63 Identities=13% Similarity=0.259 Sum_probs=30.5
Q ss_pred HHHHHHHhCCCCeEEEeCCCCCHH---HHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCCCEEEEc
Q 046651 20 IYQELSTINGVPPVVVRNDEWTWR---DICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWDVPILGVC 92 (392)
Q Consensus 20 l~q~L~~v~G~~pvVV~nd~~~~e---el~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~iPILGVC 92 (392)
+.+.|.. .|++|+.... .++.+ |...++|+ ..+|.+||..|-| |+.-+...|++. ++-|.||-
T Consensus 71 l~~~l~~-~Gf~pv~~kG-~~Dv~laIDame~~~~-~~iD~~vLvSgD~------DF~~Lv~~lre~-G~~V~v~g 136 (160)
T TIGR00288 71 LIEAVVN-QGFEPIIVAG-DVDVRMAVEAMELIYN-PNIDAVALVTRDA------DFLPVINKAKEN-GKETIVIG 136 (160)
T ss_pred HHHHHHH-CCceEEEecC-cccHHHHHHHHHHhcc-CCCCEEEEEeccH------hHHHHHHHHHHC-CCEEEEEe
Confidence 3344444 5666654433 22222 33333432 4667777765544 444444445554 55555543
No 287
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=27.27 E-value=89 Score=31.64 Aligned_cols=45 Identities=18% Similarity=0.329 Sum_probs=28.1
Q ss_pred HHHHHhhhcccCCcCEEEECCCCCCCCCCCc----hhHHHHHHHHcCCCCEEEEc
Q 046651 42 WRDICRYLYEENAFDNIVISPGPGSPACPED----IGICLRVLLECWDVPILGVC 92 (392)
Q Consensus 42 ~eel~~~l~e~~~fDgIVISpGPGsp~~~~d----~gi~~~ll~~~~~iPILGVC 92 (392)
..++...+ .+.|.||| |||||+..-- +.-..+.|++. +-|+..||
T Consensus 174 ~p~vl~AI---~~AD~IVl--GPgsp~TSI~P~LlVpgI~eAL~~s-~A~vV~Vs 222 (303)
T cd07186 174 APEVLEAI---EDADLVII--GPSNPVTSIGPILALPGIREALRDK-KAPVVAVS 222 (303)
T ss_pred CHHHHHHH---HhCCEEEE--CCCccHHHhhhhccchhHHHHHHhC-CCCEEEEc
Confidence 34555555 56799999 5788875221 11234455554 77999999
No 288
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=27.06 E-value=2.7e+02 Score=26.94 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=48.3
Q ss_pred CccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCC-C--------CCHHHHHhhhcc--cCCcCEEEECCCCCCCCCC
Q 046651 3 EFVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRND-E--------WTWRDICRYLYE--ENAFDNIVISPGPGSPACP 70 (392)
Q Consensus 3 ~~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd-~--------~~~eel~~~l~e--~~~fDgIVISpGPGsp~~~ 70 (392)
+.-|+.|+--|... +..+.+.|+. .|++++.+..- . .+.+.+...+.+ ....|+|+||. +- .
T Consensus 119 g~~RIalvTPY~~~v~~~~~~~l~~-~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisC---Tn--L 192 (239)
T TIGR02990 119 GVRRISLLTPYTPETSRPMAQYFAV-RGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSC---TA--L 192 (239)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHh-CCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeC---CC--c
Confidence 45689999877554 4457777776 79998776321 1 233454444432 35689999962 21 1
Q ss_pred CchhHHHHHHHHcCCCCEEEE
Q 046651 71 EDIGICLRVLLECWDVPILGV 91 (392)
Q Consensus 71 ~d~gi~~~ll~~~~~iPILGV 91 (392)
.-..+..++-++. ++||+-.
T Consensus 193 rt~~vi~~lE~~l-GkPVlsS 212 (239)
T TIGR02990 193 RAATCAQRIEQAI-GKPVVTS 212 (239)
T ss_pred hhHHHHHHHHHHH-CCCEEEH
Confidence 2233333333334 9999875
No 289
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.01 E-value=3.3e+02 Score=24.69 Aligned_cols=87 Identities=23% Similarity=0.098 Sum_probs=51.4
Q ss_pred CccEEEEE----ECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHH
Q 046651 3 EFVRTLLI----DNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLR 78 (392)
Q Consensus 3 ~~~r~LlI----DnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ 78 (392)
.++|+|+. |-+|-=..=+..+|+. .|++++...--. +.+|+...-.| ...|.|++|.=-|.- .....-+.+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d-~GfeVi~~g~~~-tp~e~v~aA~~-~dv~vIgvSsl~g~h--~~l~~~lve 85 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALAD-AGFEVINLGLFQ-TPEEAVRAAVE-EDVDVIGVSSLDGGH--LTLVPGLVE 85 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHh-CCceEEecCCcC-CHHHHHHHHHh-cCCCEEEEEeccchH--HHHHHHHHH
Confidence 45777776 5555445456677777 799987654443 45666554333 678999997433221 223344556
Q ss_pred HHHHcCCCCEEEEcHH
Q 046651 79 VLLECWDVPILGVCLG 94 (392)
Q Consensus 79 ll~~~~~iPILGVCLG 94 (392)
.+++.+--.|+.+|-|
T Consensus 86 ~lre~G~~~i~v~~GG 101 (143)
T COG2185 86 ALREAGVEDILVVVGG 101 (143)
T ss_pred HHHHhCCcceEEeecC
Confidence 6676544556666644
No 290
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=26.98 E-value=57 Score=27.77 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=35.2
Q ss_pred EEEEEECCCCch--H---HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCc-CEEEECCCCCCC
Q 046651 6 RTLLIDNYDSYT--Y---NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAF-DNIVISPGPGSP 67 (392)
Q Consensus 6 r~LlIDnyDSyT--~---nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~f-DgIVISpGPGsp 67 (392)
|++||=|.-|-+ . .+.+.+.. .+....++.-......+-.....+...+ |.||+.||-|+.
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl 67 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRA-AGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGTL 67 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHH-TTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHHH
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHH-cCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccHH
Confidence 467777765542 2 24555555 6777766655443333222222233566 999999998864
No 291
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=26.90 E-value=2e+02 Score=31.74 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=29.9
Q ss_pred CCchHHHHHHHHHhCCCCeEEE--eCCCCCHHHHHhhhccc-CCcCEEEECCCCC
Q 046651 14 DSYTYNIYQELSTINGVPPVVV--RNDEWTWRDICRYLYEE-NAFDNIVISPGPG 65 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV--~nd~~~~eel~~~l~e~-~~fDgIVISpGPG 65 (392)
||+.+.|...|++ .|.++..+ -.|+ .+++...|-+. ..+|.||++||-|
T Consensus 393 dsn~~~L~~~l~~-~G~~v~~~~~v~Dd--~~~i~~~l~~a~~~~DlIIttGG~s 444 (597)
T PRK14491 393 DSNRFTIKAMAKK-LGCEVIDLGIIEDS--EAALEATLEQAAAQADVVISSGGVS 444 (597)
T ss_pred eCCHHHHHHHHHH-CCCEEEEEEEeCCC--HHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 5677788888887 78876432 2333 34333332211 4689999998743
No 292
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=26.33 E-value=3.3e+02 Score=29.41 Aligned_cols=101 Identities=14% Similarity=0.206 Sum_probs=59.5
Q ss_pred cEEEEEECCCCchH---HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-----------
Q 046651 5 VRTLLIDNYDSYTY---NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----------- 70 (392)
Q Consensus 5 ~r~LlIDnyDSyT~---nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----------- 70 (392)
.-++.||.-+..+. ++++.|+....- ..++--+-.|.++..... +..+|+|+++.|||+....
T Consensus 261 ~d~i~iD~~~g~~~~~~~~i~~ik~~~p~-~~vi~g~v~t~e~a~~a~--~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~ 337 (505)
T PLN02274 261 VDVVVLDSSQGDSIYQLEMIKYIKKTYPE-LDVIGGNVVTMYQAQNLI--QAGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHhCCC-CcEEEecCCCHHHHHHHH--HcCcCEEEECCCCCccccCccccccCCCcc
Confidence 45788888665543 566777664322 233333334567666533 3679999999888853211
Q ss_pred CchhHHHHHHHHcCCCCEE---EEcHHHH-HHHHHhCCeeeec
Q 046651 71 EDIGICLRVLLECWDVPIL---GVCLGHQ-ALGFVHGADIVHA 109 (392)
Q Consensus 71 ~d~gi~~~ll~~~~~iPIL---GVCLGhQ-~La~a~Gg~V~~a 109 (392)
..+..+.++.++. ++||+ ||.-+-+ +-|.++||.-+-.
T Consensus 338 ~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 338 TAVYKVASIAAQH-GVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred cHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 1233344554444 78987 5555544 4555788887665
No 293
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=26.32 E-value=3.2e+02 Score=27.91 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=37.2
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCC--CCHHHHHhhhcccCCcCEEEECCCCCCCCC
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDE--WTWRDICRYLYEENAFDNIVISPGPGSPAC 69 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~--~~~eel~~~l~e~~~fDgIVISpGPGsp~~ 69 (392)
.++|.. .+|..+..+....|..++.|+-|+ .+.+++...+ + ...+.|++.|-|.+|+-
T Consensus 167 ~Vlv~~---P~y~~~~~~~~~~g~~~~~v~~~~~g~~~~~l~~~~-~-~~~k~i~~~p~p~NPTG 226 (431)
T PRK15481 167 SVAVED---PCFLSSINMLRYAGFSASPVSVDAEGMQPEKLERAL-A-QGARAVILTPRAHNPTG 226 (431)
T ss_pred EEEEeC---CCcHHHHHHHHHcCCeEEeeccCCCCCCHHHHHHHH-h-cCCCEEEECCCCCCCCC
Confidence 345553 355555555556899888886653 3455665543 1 35788999889998874
No 294
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=26.16 E-value=30 Score=33.99 Aligned_cols=34 Identities=35% Similarity=0.559 Sum_probs=26.0
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHHcC--CCCEEEEcHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLECW--DVPILGVCLGH 95 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~--~iPILGVCLGh 95 (392)
..+|.||.-||-|+ .++..+... ++|||||=.|.
T Consensus 75 ~~~D~ii~lGGDGT---------~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 75 EGVDLIIVLGGDGT---------FLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCSSEEEEEESHHH---------HHHHHHHCTTST-EEEEEESSS
T ss_pred cCCCEEEEECCCHH---------HHHHHHHhccCCCcEEeecCCC
Confidence 68999999999876 456666543 89999999874
No 295
>PRK06849 hypothetical protein; Provisional
Probab=26.05 E-value=2.1e+02 Score=29.02 Aligned_cols=81 Identities=12% Similarity=0.179 Sum_probs=47.2
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.|+|||+.....-.+.+++.|.+ .|.+++++..+...+.... ..+|..+.-|.|-. +...-+..+.+++++.
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~-~G~~Vi~~d~~~~~~~~~s------~~~d~~~~~p~p~~-d~~~~~~~L~~i~~~~ 75 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHN-AGHTVILADSLKYPLSRFS------RAVDGFYTIPSPRW-DPDAYIQALLSIVQRE 75 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCchHHHHHH------HhhhheEEeCCCCC-CHHHHHHHHHHHHHHc
Confidence 57899998755557899999999 6999988866653222211 23566666555532 1011133444555554
Q ss_pred CCCCEE-EEcH
Q 046651 84 WDVPIL-GVCL 93 (392)
Q Consensus 84 ~~iPIL-GVCL 93 (392)
++.++ =+|-
T Consensus 76 -~id~vIP~~e 85 (389)
T PRK06849 76 -NIDLLIPTCE 85 (389)
T ss_pred -CCCEEEECCh
Confidence 44433 3343
No 296
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=25.97 E-value=42 Score=33.63 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=25.7
Q ss_pred CcCEEEECCCCCCCCCCCchhH-HHHHHHHcCCCCEEEEcH
Q 046651 54 AFDNIVISPGPGSPACPEDIGI-CLRVLLECWDVPILGVCL 93 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi-~~~ll~~~~~iPILGVCL 93 (392)
++|+|.++-|||+.+... +++ ..+-|....++|+.||.-
T Consensus 70 ~id~iav~~GPGsftglr-ig~~~Ak~la~~~~~p~~~v~h 109 (314)
T TIGR03723 70 DIDAIAVTAGPGLIGALL-VGVSFAKALALALNKPLIGVNH 109 (314)
T ss_pred HCCEEEEecCCChHHhHH-HHHHHHHHHHHHhCCCEEeccc
Confidence 479999999999887532 121 123333334899999963
No 297
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=25.80 E-value=5e+02 Score=23.51 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=31.7
Q ss_pred CCCchHH-HHHHHH---HhCCCCeEEEeCCCCCHHHHHhhhccc-CCcCEEEECCCCCC
Q 046651 13 YDSYTYN-IYQELS---TINGVPPVVVRNDEWTWRDICRYLYEE-NAFDNIVISPGPGS 66 (392)
Q Consensus 13 yDSyT~n-l~q~L~---~v~G~~pvVV~nd~~~~eel~~~l~e~-~~fDgIVISpGPGs 66 (392)
|++-|.. |-+.++ .-.|+++.....+. --++..++-++ ..+|+|||=||--+
T Consensus 21 YG~~tl~di~~~~~~~a~~~g~~v~~~QSN~--EGelId~i~~a~~~~dgiIINpga~T 77 (141)
T TIGR01088 21 YGSQTLEEIVEIIETFAAQLNVELEFFQSNS--EGQLIDKIHEAEGQYDGIIINPGALT 77 (141)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCEEEEEeeCc--HHHHHHHHHhccccCCEEEEcChHHh
Confidence 6666643 444333 33688887775554 34666666655 35899999766443
No 298
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=25.80 E-value=86 Score=32.68 Aligned_cols=52 Identities=19% Similarity=0.418 Sum_probs=38.1
Q ss_pred CCcCEEEECCCCCCCCCCC-chhHHHHHHHHcCCCCEEEEcHHHHHHHHHhCCeeee
Q 046651 53 NAFDNIVISPGPGSPACPE-DIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVH 108 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~-d~gi~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~~ 108 (392)
.++|+|-++-|||-|-+.. -+.....+.... .+|++|| |.|.|+++-.+.++
T Consensus 102 ~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l-~kPlipV---HHMeAHAL~~rl~~ 154 (405)
T KOG2707|consen 102 KDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKL-QKPLIPV---HHMEAHALSIRLVD 154 (405)
T ss_pred ccceeEEEecCCCceeehhhhHHHHHHHHHhc-cCCccch---hHHHHhHHHHHhcc
Confidence 4699999999999987643 233334444434 8999999 88989888766665
No 299
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=25.51 E-value=3.8e+02 Score=26.04 Aligned_cols=76 Identities=20% Similarity=0.127 Sum_probs=44.4
Q ss_pred cEEEEEECCCCch--------HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHH
Q 046651 5 VRTLLIDNYDSYT--------YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGIC 76 (392)
Q Consensus 5 ~r~LlIDnyDSyT--------~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~ 76 (392)
||++||=-+.|-- ..+.++|.+ .|.+++++..+.. +-.... +...+|.|++. -+|.... | +..
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~i~~al~~-~g~~~~~i~~~~~-~~~~~~---~~~~~D~v~~~-~~g~~ge--~-~~~ 71 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGERVKKALEK-LGYEVTVFDVDED-FLKKVD---QLKSFDVVFNV-LHGTFGE--D-GTL 71 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHHHHHHHHH-cCCeEEEEccCch-HHHHhh---hccCCCEEEEe-CCCCCCC--c-cHH
Confidence 7888886665542 357788887 7999988865542 222211 12468977663 2344322 2 233
Q ss_pred HHHHHHcCCCCEEE
Q 046651 77 LRVLLECWDVPILG 90 (392)
Q Consensus 77 ~~ll~~~~~iPILG 90 (392)
..+++.. ++|++|
T Consensus 72 ~~~le~~-gip~~G 84 (299)
T PRK14571 72 QAILDFL-GIRYTG 84 (299)
T ss_pred HHHHHHc-CCCccC
Confidence 3444444 899998
No 300
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=25.45 E-value=1.7e+02 Score=24.86 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=30.2
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCC
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGP 64 (392)
||+.+.. .....+.|++ |.++++.. ..+.+++...+ ..+|+||+.+++
T Consensus 1 ili~~~~---~~~~~~~l~~--~~~v~~~~--~~~~~~~~~~l---~~~d~ii~~~~~ 48 (133)
T PF00389_consen 1 ILITDPL---PDEEIERLEE--GFEVEFCD--SPSEEELAERL---KDADAIIVGSGT 48 (133)
T ss_dssp EEESSS----SHHHHHHHHH--TSEEEEES--SSSHHHHHHHH---TTESEEEESTTS
T ss_pred eEEeccC---CHHHHHHHHC--CceEEEeC--CCCHHHHHHHh---CCCeEEEEcCCC
Confidence 4555543 3344566666 66554443 44577787777 789999996555
No 301
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=25.39 E-value=74 Score=33.92 Aligned_cols=86 Identities=19% Similarity=0.219 Sum_probs=51.7
Q ss_pred cEEEEEECCCCch--H-HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC----CCchhHHH
Q 046651 5 VRTLLIDNYDSYT--Y-NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC----PEDIGICL 77 (392)
Q Consensus 5 ~r~LlIDnyDSyT--~-nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~----~~d~gi~~ 77 (392)
.||.|.... .|+ | ..+++|++ +|++++.... ..-+++. .+.|+|.|.|| =|.- .++-.-.+
T Consensus 246 ~rIAVA~D~-AF~FyY~~nl~~Lr~-~GAelv~FSP--L~D~~lP------~~~D~vYlgGG--YPElfA~~L~~n~~~~ 313 (451)
T COG1797 246 VRIAVARDA-AFNFYYPENLELLRE-AGAELVFFSP--LADEELP------PDVDAVYLGGG--YPELFAEELSANESMR 313 (451)
T ss_pred ceEEEEecc-hhccccHHHHHHHHH-CCCEEEEeCC--cCCCCCC------CCCCEEEeCCC--ChHHHHHHHhhCHHHH
Confidence 577777532 333 2 35677877 8988866533 2123432 25999999554 3432 11112233
Q ss_pred HHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 78 RVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 78 ~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
+-|++ ..++||+|=|-|+--|+...
T Consensus 314 ~~i~~~~~~G~piyaECGGlMYL~~~l 340 (451)
T COG1797 314 RAIKAFAAAGKPIYAECGGLMYLGESL 340 (451)
T ss_pred HHHHHHHHcCCceEEecccceeehhhe
Confidence 44444 34899999999999888874
No 302
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=25.31 E-value=4.5e+02 Score=24.52 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=35.3
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
||++|||...-+-..|.+.|...-+.+++..-.+ -++...+ .+...+|.||+-
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~---~~~~l~~-~~~~~pdvvl~D 53 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASN---GEEALDL-ARELKPDVVLLD 53 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCC---HHHHHHH-hhhcCCCEEEEc
Confidence 6899999998888899999987444444333222 2333333 244678999984
No 303
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=25.22 E-value=1.4e+02 Score=28.93 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=50.6
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhH-HHHHHHH-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGI-CLRVLLE- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi-~~~ll~~- 82 (392)
-.+++||.+ +-++-|++.|..... +.||.|+-.....+.. ...++ +++.||.-.+....-.|. ..+.|..
T Consensus 92 g~~ifld~G-TT~~~la~~L~~~~~--ltviTNsl~ia~~l~~----~~~~~-vi~~GG~~~~~~~~~~G~~a~~~l~~~ 163 (253)
T COG1349 92 GDTIFLDAG-TTTLALARALPDDNN--LTVITNSLNIAAALLE----KPNIE-VILLGGTVRKKSGSFVGPLAEEFLRQF 163 (253)
T ss_pred CCEEEECCC-cHHHHHHHHhCcCCC--eEEEeCCHHHHHHHHh----CCCCe-EEEeCcEEEcCCCeEEcHHHHHHHHhC
Confidence 458889984 777788888865222 8899998764444443 23344 456688766665554444 3455555
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
.-++=++|+|
T Consensus 164 ~~d~aFig~~ 173 (253)
T COG1349 164 NFDKAFIGAD 173 (253)
T ss_pred cccEEEEecc
Confidence 3477777766
No 304
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=24.87 E-value=1.5e+02 Score=33.21 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=44.7
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
.||+||||........+.+.|.. .|..+....+ .++....+ +...||.|++-- .-|. ..-+..+ +.+++
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~a~~----~~~al~~~-~~~~~dlil~D~--~mp~-~~G~~~~-~~ir~~ 759 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVE-LGQQVTTAAS----GTEALELG-RQHRFDLVLMDI--RMPG-LDGLETT-QLWRDD 759 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHH-cCCEEEEECC----HHHHHHHH-hcCCCCEEEEeC--CCCC-CCHHHHH-HHHHhc
Confidence 37899999755555566677766 6877655433 23333322 336799988821 1121 1122323 33332
Q ss_pred ----cCCCCEEEEcH
Q 046651 83 ----CWDVPILGVCL 93 (392)
Q Consensus 83 ----~~~iPILGVCL 93 (392)
...+||+.++-
T Consensus 760 ~~~~~~~~pii~lt~ 774 (921)
T PRK15347 760 PNNLDPDCMIVALTA 774 (921)
T ss_pred hhhcCCCCcEEEEeC
Confidence 14689998863
No 305
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=24.69 E-value=2.8e+02 Score=27.92 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhCCCCeEEEeC---C--CCCHHHHHhhhcccCCcCEEEECCCCCCCCC
Q 046651 17 TYNIYQELSTINGVPPVVVRN---D--EWTWRDICRYLYEENAFDNIVISPGPGSPAC 69 (392)
Q Consensus 17 T~nl~q~L~~v~G~~pvVV~n---d--~~~~eel~~~l~e~~~fDgIVISpGPGsp~~ 69 (392)
+|..|..+.+..|..++.++. | ..+++++...+-+...-..++|.|.|.+|+.
T Consensus 129 ~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG 186 (396)
T PRK09257 129 TWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTG 186 (396)
T ss_pred CcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCC
Confidence 454455555558999988864 2 2355666554311112257888899999975
No 306
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=24.63 E-value=4.3e+02 Score=25.80 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=45.2
Q ss_pred CccEEEEEECCCCch--------HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchh
Q 046651 3 EFVRTLLIDNYDSYT--------YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIG 74 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT--------~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~g 74 (392)
+.+||+|+=.+.|-- .++.+.|.+ .|.+++.+..+.. ++...| ....+|.+++.= .|... +| +
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~-~g~~~~~~~~~~~---~~~~~l-~~~~~d~vf~~l-hG~~g--e~-~ 72 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLIS-QGYDAVGVDASGK---ELVAKL-LELKPDKCFVAL-HGEDG--EN-G 72 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHH-cCCEEEEEcCCch---hHHHHh-hccCCCEEEEeC-CCCCC--CC-h
Confidence 468999998776652 368888987 7999887754421 122222 124688776632 13222 12 2
Q ss_pred HHHHHHHHcCCCCEEE
Q 046651 75 ICLRVLLECWDVPILG 90 (392)
Q Consensus 75 i~~~ll~~~~~iPILG 90 (392)
....+++.. ++|+.|
T Consensus 73 ~i~~~le~~-gip~~G 87 (296)
T PRK14569 73 RVSALLEML-EIKHTS 87 (296)
T ss_pred HHHHHHHHc-CCCeeC
Confidence 233444434 888888
No 307
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=24.40 E-value=2.5e+02 Score=24.11 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=34.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
+++||+-+-.--|.-|++...+. .|.+.++--..+ .++..++ ..+|.|+|+
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~---~e~~~~~---~~~DvvLlG 55 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSE---TELSEYI---DNADVVLLG 55 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEech---hHHHHhh---hcCCEEEEC
Confidence 46888888766677777666544 488887765544 3454544 689999994
No 308
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=24.35 E-value=1.3e+02 Score=28.01 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=31.4
Q ss_pred cEEEEEEC-CCCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDN-YDSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDn-yDSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
|||||+=- .|+-|.-|+..|+.- .|.++.++.-.+. .++. ...||.|||
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~--~~~~-----l~~ydavVI 53 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAV--EEPA-----LEDYDAVVI 53 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhh--hccC-----hhhCceEEE
Confidence 88888743 366787766555433 4778877755443 2211 167999999
No 309
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=24.34 E-value=1.9e+02 Score=32.50 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=43.9
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+++||||........+...|.. .|..++.+.+ ..+....+.+...||.|++--. -|. ..-+..+.++-...
T Consensus 681 ~~~vLivdD~~~~~~~l~~~L~~-~g~~v~~a~~----~~~al~~~~~~~~~Dlvl~D~~--mp~-~~G~~~~~~lr~~~ 752 (914)
T PRK11466 681 GLRLLLIEDNPLTQRITAEMLNT-SGAQVVAVGN----AAQALETLQNSEPFAAALVDFD--LPD-YDGITLARQLAQQY 752 (914)
T ss_pred CcceEEEeCCHHHHHHHHHHHHh-cCCceEEeCC----HHHHHHHHHcCCCCCEEEEeCC--CCC-CCHHHHHHHHHhhC
Confidence 36899999765555566677765 7887765433 2333333322246899988311 121 11233333333334
Q ss_pred CCCCEEEE
Q 046651 84 WDVPILGV 91 (392)
Q Consensus 84 ~~iPILGV 91 (392)
..+||+.+
T Consensus 753 ~~~~ii~~ 760 (914)
T PRK11466 753 PSLVLIGF 760 (914)
T ss_pred CCCCEEEE
Confidence 57787654
No 310
>PLN02727 NAD kinase
Probab=24.30 E-value=1.6e+02 Score=34.30 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=24.7
Q ss_pred CcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQ 96 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ 96 (392)
.+|.||.-||-|+. ++..+. ...+|||||=+|+-
T Consensus 743 ~~DLVIvLGGDGTl---------LrAar~~~~~~iPILGINlGrL 778 (986)
T PLN02727 743 RVDFVACLGGDGVI---------LHASNLFRGAVPPVVSFNLGSL 778 (986)
T ss_pred CCCEEEEECCcHHH---------HHHHHHhcCCCCCEEEEeCCCc
Confidence 57999988998863 333333 23899999999964
No 311
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=24.12 E-value=2.1e+02 Score=30.65 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=46.2
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
.+|||||...+-...+-+.|+. .|..++...+ .++...++-+ ..||.||+- ---|. ..-+.+..++.....
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~-~G~~v~~a~~----~~~al~~i~~-~~~~lvl~D--i~mp~-~~Gl~ll~~i~~~~~ 75 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALEL-AGYEVVTAES----AEEALEALSE-SPFDLVLLD--IRMPG-MDGLELLKEIKSRDP 75 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHH-cCCeEEEeCC----HHHHHHHHhc-CCCCEEEEe--cCCCC-CchHHHHHHHHhhCC
Confidence 4699999876667777788877 7877765543 3445444422 356776661 01121 111233333333345
Q ss_pred CCCEEEEcHHHH
Q 046651 85 DVPILGVCLGHQ 96 (392)
Q Consensus 85 ~iPILGVCLGhQ 96 (392)
++||+-+- ||-
T Consensus 76 ~~pVI~~T-g~g 86 (464)
T COG2204 76 DLPVIVMT-GHG 86 (464)
T ss_pred CCCEEEEe-CCC
Confidence 88988653 444
No 312
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=24.05 E-value=1.2e+02 Score=30.58 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=25.9
Q ss_pred HHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEE
Q 046651 42 WRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPIL 89 (392)
Q Consensus 42 ~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPIL 89 (392)
.+.+..+| ...++|||.||=|. ++.-......+|+- ..++|+.
T Consensus 92 v~~i~k~L---~RlhavVIGPGLGR--dp~~~k~i~~iley~~~~dvP~V 136 (306)
T KOG3974|consen 92 VDIIEKLL---QRLHAVVIGPGLGR--DPAILKEIAKILEYLRGKDVPLV 136 (306)
T ss_pred HhHHHHHH---hheeEEEECCCCCC--CHHHHHHHHHHHHHHhcCCCcEE
Confidence 34555566 78999999999987 22222223333333 2488875
No 313
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=24.00 E-value=60 Score=33.35 Aligned_cols=48 Identities=29% Similarity=0.526 Sum_probs=30.4
Q ss_pred CCcCEEEECCCCCCCCCCCchhHH-HHHHHHcCCCCEEEEc--HHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGIC-LRVLLECWDVPILGVC--LGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~-~~ll~~~~~iPILGVC--LGhQ~La~a 101 (392)
.+.|+|.+|-|||.+.+.. +|.. .+-|....++|++||+ .||-..+..
T Consensus 69 ~did~Iavt~GPGl~~~Lr-VG~~~Ak~LA~a~~~PligV~HlegHi~a~~l 119 (345)
T PTZ00340 69 SDISLICYTKGPGMGAPLS-VGAVVARTLSLLWGKPLVGVNHCVAHIEMGRL 119 (345)
T ss_pred HHCCEEEEecCCCcHhhHH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHhh
Confidence 3579999999999876532 2221 2223333499999997 455554443
No 314
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=23.85 E-value=1.7e+02 Score=29.87 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..+|-|++.+|-+.... ....-..++|++ .+++++-|||-|-=+|+.+
T Consensus 75 ~~~~~v~v~~g~~~~~~-~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 75 PPIDILPVCGGLGPERP-VNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred CcceEEEEecCCCcccc-cchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 34788888666443322 221224455655 3599999999999999987
No 315
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=23.79 E-value=4.1e+02 Score=27.81 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=40.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCC---CCCHHHHHhhhcccCCcCEEEEC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRND---EWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd---~~~~eel~~~l~e~~~fDgIVIS 61 (392)
=|+|++.|+ .|-..+.+.+.. .|.+++++..+ ..+.+++...|-+...++.|.+.
T Consensus 81 dkVLv~~nG-~FG~R~~~ia~~-~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~v 138 (383)
T COG0075 81 DKVLVVVNG-KFGERFAEIAER-YGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVV 138 (383)
T ss_pred CeEEEEeCC-hHHHHHHHHHHH-hCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEE
Confidence 388999984 788778887766 79998888654 33677888877555678888884
No 316
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=23.67 E-value=1.3e+02 Score=26.13 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=36.8
Q ss_pred CCchHHHHHHHHHhCCCCeEEEeCCCC--CHHHHHhhhcccCCcCEEEECCCCCCCCCCCch-hHHHHHHHH----cCCC
Q 046651 14 DSYTYNIYQELSTINGVPPVVVRNDEW--TWRDICRYLYEENAFDNIVISPGPGSPACPEDI-GICLRVLLE----CWDV 86 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV~nd~~--~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~-gi~~~ll~~----~~~i 86 (392)
-..|..+++.|++.++.....+.-.+. ...++ ..||.||+ |+|-....+ +.+.+++++ ..+.
T Consensus 8 ~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~~~~~~-------~~yD~vi~----gspiy~g~~~~~~~~fi~~~~~~l~~k 76 (143)
T PF12724_consen 8 TGNTKKIAEWIAEKLGEEGELVDLEKVEEDEPDL-------SDYDAVIF----GSPIYAGRIPGEMREFIKKNKDNLKNK 76 (143)
T ss_pred CchHHHHHHHHHHHHhhhccEEEHHhhhhccccc-------ccCCEEEE----EEEEECCcCCHHHHHHHHHHHHHHcCC
Confidence 346788999999888744333332221 11222 67999999 344322222 223344432 3466
Q ss_pred CEEEEcH
Q 046651 87 PILGVCL 93 (392)
Q Consensus 87 PILGVCL 93 (392)
|+.-++-
T Consensus 77 ~v~~f~~ 83 (143)
T PF12724_consen 77 KVALFSV 83 (143)
T ss_pred cEEEEEE
Confidence 7655443
No 317
>PRK15076 alpha-galactosidase; Provisional
Probab=23.19 E-value=1.7e+02 Score=30.88 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=32.4
Q ss_pred HHHHHHcCCCCEEEEcHHHH----HHHHHhCCeeeecC-----CCceeceeEEEecCCcccccCC
Q 046651 77 LRVLLECWDVPILGVCLGHQ----ALGFVHGADIVHAP-----EPVHGRLSEIVHNGDRLFHDIP 132 (392)
Q Consensus 77 ~~ll~~~~~iPILGVCLGhQ----~La~a~Gg~V~~ap-----ep~hG~~s~i~h~g~~LF~~ip 132 (392)
-..+....+..|+|+|-|.+ .|+..+|....... -.+.++...+..+|.+++..+.
T Consensus 154 t~~~~~~~~~rviG~c~~~~~~~~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~ 218 (431)
T PRK15076 154 TWAMNRYPGIKTVGLCHSVQGTAEQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELR 218 (431)
T ss_pred HHHHhcCCCCCEEEECCCHHHHHHHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHH
Confidence 33444444678999995554 56666664322111 1255667777777777665443
No 318
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=23.14 E-value=1.4e+02 Score=33.42 Aligned_cols=51 Identities=18% Similarity=0.080 Sum_probs=30.2
Q ss_pred CCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhccc--CCcCEEEECCCCC
Q 046651 14 DSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEE--NAFDNIVISPGPG 65 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~--~~fDgIVISpGPG 65 (392)
|++.+-|...|.+ .|++++.+..-..+.+++...|-+. ..+|-||++||-+
T Consensus 208 dsN~~~L~a~l~~-~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts 260 (659)
T PLN02699 208 DSNRAMLLAAAIQ-QQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVS 260 (659)
T ss_pred eChHHHHHHHHHH-CCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 4556678888887 7887754321111234444443322 2589999998743
No 319
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.10 E-value=5.2e+02 Score=27.25 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=57.7
Q ss_pred cEEEEEECCCCchH---HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--------CCch
Q 046651 5 VRTLLIDNYDSYTY---NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--------PEDI 73 (392)
Q Consensus 5 ~r~LlIDnyDSyT~---nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--------~~d~ 73 (392)
.-+++||.-..... ++++.+.....--++++. +-.|.++...++ +..+|+|.++-|||+.-. ..++
T Consensus 166 vDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g-~V~T~e~a~~l~--~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~l 242 (404)
T PRK06843 166 VDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAG-NIVTKEAALDLI--SVGADCLKVGIGPGSICTTRIVAGVGVPQI 242 (404)
T ss_pred CCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEE-ecCCHHHHHHHH--HcCCCEEEECCCCCcCCcceeecCCCCChH
Confidence 45678887655433 445555443221122333 334567665543 257999999889987411 0122
Q ss_pred ---hHHHHHHHHcCCCCEE---EEc-HHHHHHHHHhCCeeeecCCCc
Q 046651 74 ---GICLRVLLECWDVPIL---GVC-LGHQALGFVHGADIVHAPEPV 113 (392)
Q Consensus 74 ---gi~~~ll~~~~~iPIL---GVC-LGhQ~La~a~Gg~V~~apep~ 113 (392)
-.+.+++.+. ++||+ ||. -|.-+-+.++||.-+-.-...
T Consensus 243 tai~~v~~~~~~~-~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~ 288 (404)
T PRK06843 243 TAICDVYEVCKNT-NICIIADGGIRFSGDVVKAIAAGADSVMIGNLF 288 (404)
T ss_pred HHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEccee
Confidence 1233433333 78987 453 444456778898887764433
No 320
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=22.98 E-value=2.4e+02 Score=24.76 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=30.0
Q ss_pred cEEEEEECC-CCchHHHHHHHHHhCCCCe-EEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTINGVPP-VVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v~G~~p-vVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
|+|+||=-- ..+|..+++.|++.+|..- ++.....+..++... ..+|.+++
T Consensus 2 ~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~~~~~-----~~~d~~~~ 54 (151)
T COG0716 2 MKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKDDLL-----ESYDELLL 54 (151)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcchhhh-----ccCCEEEE
Confidence 677777432 3468889999999888772 221121111222211 35888888
No 321
>PRK10403 transcriptional regulator NarP; Provisional
Probab=22.97 E-value=2.8e+02 Score=23.95 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=29.0
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
+++|+||........+-..|....+...++...+ .++....+ ....+|.||+.
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~-~~~~~dlvi~d 59 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGD---GASAIDLA-NRLDPDVILLD 59 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCC---HHHHHHHH-HhcCCCEEEEe
Confidence 5899999865555556666654234444322222 22222222 23569999884
No 322
>PF13941 MutL: MutL protein
Probab=22.89 E-value=3.7e+02 Score=28.84 Aligned_cols=61 Identities=20% Similarity=0.107 Sum_probs=45.4
Q ss_pred CCccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCC
Q 046651 2 LEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 2 ~~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGP 64 (392)
.|.+|+.+|-.-.+.|-.-.+..+.-.|..+.-+..-+++-+++... ++..+|-|+|+||-
T Consensus 74 aGGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i--~~~~PDiILLaGGt 134 (457)
T PF13941_consen 74 AGGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEI--REIRPDIILLAGGT 134 (457)
T ss_pred CCcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHH--hccCCCEEEEeCCc
Confidence 35688888888777887777777766788887776667666666552 34789999999885
No 323
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=22.66 E-value=1.6e+02 Score=34.29 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=42.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
.+++||||.....-..+.+.|+. .|..++...+- ++....+ +...+|.|++-- .-|. ...+..+ +.+++
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~----~~al~~~-~~~~~dlil~D~--~mp~-~~g~~~~-~~i~~~ 1027 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNL-LGYDVDEATDG----VQALHKV-SMQHYDLLITDV--NMPN-MDGFELT-RKLREQ 1027 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHH-cCCEEEEECCH----HHHHHHh-hcCCCCEEEEeC--CCCC-CCHHHHH-HHHHhc
Confidence 36899999755455556677776 68776544332 2333222 336789888721 1121 1122223 33333
Q ss_pred cCCCCEEEE
Q 046651 83 CWDVPILGV 91 (392)
Q Consensus 83 ~~~iPILGV 91 (392)
...+||+.+
T Consensus 1028 ~~~~pii~l 1036 (1197)
T PRK09959 1028 NSSLPIWGL 1036 (1197)
T ss_pred CCCCCEEEE
Confidence 347888766
No 324
>PRK03094 hypothetical protein; Provisional
Probab=22.63 E-value=1.2e+02 Score=24.85 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCC
Q 046651 18 YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67 (392)
Q Consensus 18 ~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp 67 (392)
.+|-++|+. .|.+++-+++.. ++ ..+|++|++|-..+.
T Consensus 11 s~i~~~L~~-~GYeVv~l~~~~----~~-------~~~Da~VitG~d~n~ 48 (80)
T PRK03094 11 TDVQQALKQ-KGYEVVQLRSEQ----DA-------QGCDCCVVTGQDSNV 48 (80)
T ss_pred HHHHHHHHH-CCCEEEecCccc----cc-------CCcCEEEEeCCCcce
Confidence 378999998 798887665422 12 459999998755443
No 325
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=22.17 E-value=1.8e+02 Score=27.70 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=36.6
Q ss_pred cEEEEEECCCC------chHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 5 VRTLLIDNYDS------YTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 5 ~r~LlIDnyDS------yT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
||||++-.+++ +++++.++|.. .|.++.|+..+....... .....+|.|.+.
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~-~G~~v~v~~~~~~~~~~~----~~~~~~diih~~ 58 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQA-AGVDSTMLVQEKKALISK----IEIINADIVHLH 58 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHh-cCCceeEEEeecchhhhC----hhcccCCEEEEE
Confidence 89999977654 56788899988 799998887665422221 123678998874
No 326
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=22.15 E-value=1.7e+02 Score=23.95 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=28.2
Q ss_pred CchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCC
Q 046651 15 SYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67 (392)
Q Consensus 15 SyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp 67 (392)
+.+ ++-++|.. .|.+++-+.+.. ++ ..+|+||++|-.-+.
T Consensus 9 ~Ls-~v~~~L~~-~GyeVv~l~~~~----~~-------~~~daiVvtG~~~n~ 48 (80)
T PF03698_consen 9 GLS-NVKEALRE-KGYEVVDLENEQ----DL-------QNVDAIVVTGQDTNM 48 (80)
T ss_pred Cch-HHHHHHHH-CCCEEEecCCcc----cc-------CCcCEEEEECCCccc
Confidence 444 89999998 798887665432 23 469999998765443
No 327
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=21.98 E-value=2.3e+02 Score=24.82 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=39.4
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCC
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWDV 86 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~i 86 (392)
+|+||........+...|.. .|..+....+ .++....+ ....+|.|++.-. -|. ...+..+..+-.....+
T Consensus 1 iliidd~~~~~~~l~~~l~~-~~~~v~~~~~----~~~~~~~~-~~~~~dlvl~d~~--~~~-~~g~~~~~~l~~~~~~~ 71 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSE-SGYVVDAASN----GRDGLHLA-LKDDYDLIILDVM--LPG-MDGWQILQTLRRSGKQT 71 (218)
T ss_pred CEEEECCHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHH-hcCCCCEEEEeCC--CCC-CCHHHHHHHHHccCCCC
Confidence 47888766666667777765 5664432222 22332222 2367999998422 121 11223332322223478
Q ss_pred CEEEEc
Q 046651 87 PILGVC 92 (392)
Q Consensus 87 PILGVC 92 (392)
|++-+.
T Consensus 72 ~iivls 77 (218)
T TIGR01387 72 PVLFLT 77 (218)
T ss_pred cEEEEE
Confidence 887664
No 328
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=21.85 E-value=4.7e+02 Score=21.76 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCCeEEEeC-CCCCHHHHHhhhccc-CCcCEEEECCCCCCCCCCCchhH-HHHHHHHcCCCCEE
Q 046651 19 NIYQELSTINGVPPVVVRN-DEWTWRDICRYLYEE-NAFDNIVISPGPGSPACPEDIGI-CLRVLLECWDVPIL 89 (392)
Q Consensus 19 nl~q~L~~v~G~~pvVV~n-d~~~~eel~~~l~e~-~~fDgIVISpGPGsp~~~~d~gi-~~~ll~~~~~iPIL 89 (392)
.-++.|++ +|+++..|.. .+..-.++..++ .+ .++|.||-.|-+....+...-+. +++.-.+. +||++
T Consensus 33 gTa~~L~~-~Gi~~~~v~~~~~~g~~~i~~~i-~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~-~Ip~~ 103 (112)
T cd00532 33 GTSRVLAD-AGIPVRAVSKRHEDGEPTVDAAI-AEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLY-KIPVT 103 (112)
T ss_pred HHHHHHHH-cCCceEEEEecCCCCCcHHHHHH-hCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHc-CCCEE
Confidence 44566776 7988877643 121123444434 45 78999999876444222122222 23333334 88886
No 329
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=21.78 E-value=27 Score=34.11 Aligned_cols=47 Identities=26% Similarity=0.484 Sum_probs=26.8
Q ss_pred CCcCEEEECCCCCCCCCCCchhHH-HHHHHHcCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGIC-LRVLLECWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~-~~ll~~~~~iPILGVCLGhQ~La~a 101 (392)
.+.|.|.++-|||+..+. .+|+. .+-|....++|+.||.- +++++..
T Consensus 49 ~did~iavt~GPGsftgL-rvG~~~Ak~La~~~~~Pli~v~~-l~a~a~~ 96 (268)
T PF00814_consen 49 SDIDAIAVTRGPGSFTGL-RVGLSFAKGLALALNIPLIGVSH-LEAHALS 96 (268)
T ss_dssp GGESEEEEEEESS-HHHH-HHHHHHHHHHHHHTT--EEEEEH-HHHHHHH
T ss_pred HHCCEEEEecCCCccccc-HHHHHHHHHHHHHhCCCeEeecc-HHHHHHh
Confidence 358999999999998643 22322 12233334999999984 3344433
No 330
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=21.76 E-value=3.9e+02 Score=27.54 Aligned_cols=95 Identities=25% Similarity=0.319 Sum_probs=61.8
Q ss_pred CCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCC--CCCchhHHHHHHHH-cCCCCEE-
Q 046651 14 DSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPA--CPEDIGICLRVLLE-CWDVPIL- 89 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~--~~~d~gi~~~ll~~-~~~iPIL- 89 (392)
.|.+++=.+.|+.....|++| .--- +-+|....+ +-..+|||+|.=-|.-- .++-+..+.+++.. .+++||+
T Consensus 208 ~Sl~W~Di~wLr~~T~LPIvv-KGil-t~eDA~~Av--e~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~l 283 (363)
T KOG0538|consen 208 PSLSWKDIKWLRSITKLPIVV-KGVL-TGEDARKAV--EAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFL 283 (363)
T ss_pred CCCChhhhHHHHhcCcCCeEE-Eeec-ccHHHHHHH--HhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEE
Confidence 478888889998876666644 2211 233333322 14689999997655432 24556666666665 4589998
Q ss_pred --EEcHHHHHH-HHHhCCeeeecCCC
Q 046651 90 --GVCLGHQAL-GFVHGADIVHAPEP 112 (392)
Q Consensus 90 --GVCLGhQ~L-a~a~Gg~V~~apep 112 (392)
||=.|--++ |.++||+-+-.-.|
T Consensus 284 DGGVR~G~DVlKALALGAk~VfiGRP 309 (363)
T KOG0538|consen 284 DGGVRRGTDVLKALALGAKGVFIGRP 309 (363)
T ss_pred ecCcccchHHHHHHhcccceEEecCc
Confidence 888887765 56789888766544
No 331
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=21.71 E-value=6.1e+02 Score=23.00 Aligned_cols=70 Identities=26% Similarity=0.315 Sum_probs=34.4
Q ss_pred CCchHHHHHHHHH---hCCCCeEEEeCCCC-CHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCCCEE
Q 046651 14 DSYTYNIYQELST---INGVPPVVVRNDEW-TWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWDVPIL 89 (392)
Q Consensus 14 DSyT~nl~q~L~~---v~G~~pvVV~nd~~-~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~iPIL 89 (392)
+.|...+.+.+.. -.|..+.+...+.. ...+....++....+|+||+.+.. .. +. ..+.+.+. ++|+.
T Consensus 15 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~--~~---~~--~~~~~~~~-~ipvV 86 (268)
T cd06271 15 DPFFAEFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTR--PD---DP--RVALLLER-GFPFV 86 (268)
T ss_pred CccHHHHHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCC--CC---Ch--HHHHHHhc-CCCEE
Confidence 3454444444432 26888776654432 111222222233579999996532 11 11 12333333 88887
Q ss_pred EE
Q 046651 90 GV 91 (392)
Q Consensus 90 GV 91 (392)
.+
T Consensus 87 ~~ 88 (268)
T cd06271 87 TH 88 (268)
T ss_pred EE
Confidence 65
No 332
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=21.65 E-value=3.2e+02 Score=23.47 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=17.7
Q ss_pred cEEEEEEC-CCCchHHHHHHHHHhC---CCCeE
Q 046651 5 VRTLLIDN-YDSYTYNIYQELSTIN---GVPPV 33 (392)
Q Consensus 5 ~r~LlIDn-yDSyT~nl~q~L~~v~---G~~pv 33 (392)
||++||=. ....|..+++.|++.+ |.++.
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~ 33 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVD 33 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEE
Confidence 77777632 2345777888887654 44443
No 333
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=21.55 E-value=2.2e+02 Score=31.75 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=43.9
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
.+++||||........+-..|.. .|..+....+. ++....+ +...||.|++--. -|. ..-+..+ +.|++
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~-~~~~v~~~~~~----~~al~~~-~~~~~dlil~D~~--mp~-~~g~~~~-~~lr~~ 736 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEE-QVEHVVLCDSG----HQAVEQA-KQRPFDLILMDIQ--MPG-MDGIRAC-ELIRQL 736 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH-cCCEEEEECCH----HHHHHHH-HhCCCCEEEEeCC--CCC-CcHHHHH-HHHHhc
Confidence 47899999754455556666766 67766555432 3333322 2367999998311 121 1122333 34443
Q ss_pred --cCCCCEEEEc
Q 046651 83 --CWDVPILGVC 92 (392)
Q Consensus 83 --~~~iPILGVC 92 (392)
..++||+.+-
T Consensus 737 ~~~~~~pii~lt 748 (919)
T PRK11107 737 PHNQNTPIIAVT 748 (919)
T ss_pred ccCCCCCEEEEe
Confidence 2478998873
No 334
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=21.49 E-value=7e+02 Score=25.95 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=57.7
Q ss_pred CchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC--CchhHHHHHHHHc-CCCCEE--
Q 046651 15 SYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP--EDIGICLRVLLEC-WDVPIL-- 89 (392)
Q Consensus 15 SyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~--~d~gi~~~ll~~~-~~iPIL-- 89 (392)
+.|+.-...|+...+.++ +|.--. +.++....+ +..+|+|++|+--|...+. .-+..+.++.+.. .++||+
T Consensus 210 ~~tW~di~wlr~~~~~Pi-ivKgV~-~~~dA~~a~--~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~d 285 (367)
T PLN02493 210 TLSWKDVQWLQTITKLPI-LVKGVL-TGEDARIAI--QAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLD 285 (367)
T ss_pred CCCHHHHHHHHhccCCCE-EeecCC-CHHHHHHHH--HcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEe
Confidence 457777777877666554 444332 456554432 2579999999887764321 1122223333332 468988
Q ss_pred -EEcHHHHHH-HHHhCCeeeecCCC
Q 046651 90 -GVCLGHQAL-GFVHGADIVHAPEP 112 (392)
Q Consensus 90 -GVCLGhQ~L-a~a~Gg~V~~apep 112 (392)
||.-|..++ +.++||+.+-.-.|
T Consensus 286 GGIr~G~Dv~KALALGA~aV~iGr~ 310 (367)
T PLN02493 286 GGVRRGTDVFKALALGASGIFIGRP 310 (367)
T ss_pred CCcCcHHHHHHHHHcCCCEEEEcHH
Confidence 788898876 55789998876554
No 335
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=21.42 E-value=4.6e+02 Score=26.41 Aligned_cols=82 Identities=24% Similarity=0.222 Sum_probs=43.5
Q ss_pred ccEEEEEECCCCc--hHHHHHHHHHh-CCCCeEEEeCCCCCHHHHHhhhc---ccCCc---CE-EEECCCCCCCCCCCch
Q 046651 4 FVRTLLIDNYDSY--TYNIYQELSTI-NGVPPVVVRNDEWTWRDICRYLY---EENAF---DN-IVISPGPGSPACPEDI 73 (392)
Q Consensus 4 ~~r~LlIDnyDSy--T~nl~q~L~~v-~G~~pvVV~nd~~~~eel~~~l~---e~~~f---Dg-IVISpGPGsp~~~~d~ 73 (392)
.+.++|+|.||.. ..+.++..... .+..+.+||.|.-+..++...+. ++..+ +. ||+|+|- +.
T Consensus 233 ~~~i~L~DTyd~~~~~~~~~~~~~~~~~~~~~~gvR~DSGd~~~~~~~~~~~l~~~g~~~~~~~ii~sg~l-------~~ 305 (343)
T cd01567 233 GLGIALIDTYDTDNGFLNALKLAKALGAGGGLLGVRLDSGDPVELIKKVRKHLDELGIDLNKKKIIISGDL-------DT 305 (343)
T ss_pred CceEEEEecCChHHHHHHHHHHHHhhcccCCCcEEECCCCCHHHHHHHHHHHHHHcCCCCCCeEEEEECCC-------CH
Confidence 4789999999876 33333333332 12457789999876544422221 22233 33 6776552 21
Q ss_pred hHHHHHHHHcC--CCCEEEEc
Q 046651 74 GICLRVLLECW--DVPILGVC 92 (392)
Q Consensus 74 gi~~~ll~~~~--~iPILGVC 92 (392)
.-..+.++++. .+.++||-
T Consensus 306 ~~~i~~~~~~~~~~~~~fGvG 326 (343)
T cd01567 306 EEAIELLLEQGASPNDAFGVG 326 (343)
T ss_pred HHHHHHHHHcCCCcCcEEeeC
Confidence 22344455543 36666663
No 336
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=21.33 E-value=2.1e+02 Score=31.63 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=44.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+++||||....+..-+-..|.. .|..+.++.+ .++....+ +...||.|++-- .-|. ..-+..+ +.|++.
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~-~g~~v~~a~~----~~eal~~~-~~~~~Dlvl~D~--~mp~-~~G~e~~-~~ir~~ 594 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEK-LGNSVDVAMT----GKEALEMF-DPDEYDLVLLDI--QLPD-MTGLDIA-RELRER 594 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHH-cCCEEEEECC----HHHHHHHh-hcCCCCEEEEcC--CCCC-CCHHHHH-HHHHhc
Confidence 47899999865555556667765 6877655432 33443333 336799988821 1221 1222333 334432
Q ss_pred ---CC-CCEEEEcH
Q 046651 84 ---WD-VPILGVCL 93 (392)
Q Consensus 84 ---~~-iPILGVCL 93 (392)
.. .||+.++-
T Consensus 595 ~~~~~~~~ii~~ta 608 (779)
T PRK11091 595 YPREDLPPLVALTA 608 (779)
T ss_pred cccCCCCcEEEEEC
Confidence 24 48888874
No 337
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=21.31 E-value=68 Score=32.40 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=25.2
Q ss_pred HHHHhhhcccCCcCEEEECCCCCCCCCCCch----hHHHHHHHHcCCCCEEEEc
Q 046651 43 RDICRYLYEENAFDNIVISPGPGSPACPEDI----GICLRVLLECWDVPILGVC 92 (392)
Q Consensus 43 eel~~~l~e~~~fDgIVISpGPGsp~~~~d~----gi~~~ll~~~~~iPILGVC 92 (392)
.++...+ .+.|.||| |||||+..--. .-..+.|+ ..|+.+||
T Consensus 174 peal~AI---~~AD~IIl--GPgsp~TSI~P~LlVpgIreAL~---~a~vV~Vs 219 (297)
T TIGR01819 174 PKVLEAI---RKEDNILI--GPSNPITSIGPILSLPGIREALR---DKKVVAVS 219 (297)
T ss_pred HHHHHHH---HhCCEEEE--CCCccHHHhhhhcCchhHHHHHH---cCCEEEEc
Confidence 4555555 56799999 58888752211 11223333 27999998
No 338
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=21.15 E-value=4.2e+02 Score=23.45 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=43.1
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+|+||||........+...|.. .|..+... + +.++....+ + ..+|.|++--. -|. ...... .+.+++..
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~--~--~~~~~~~~~-~-~~~d~vl~d~~--~~~-~~g~~~-~~~l~~~~ 70 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEM-EGFNVIVA--H--DGEQALDLL-D-DSIDLLLLDVM--MPK-KNGIDT-LKELRQTH 70 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHH-CCCEEEEe--C--CHHHHHHHh-h-cCCCEEEEeCC--CCC-CcHHHH-HHHHHhcC
Confidence 4899999876677777788876 57655432 2 234444433 2 46899988421 121 111222 23344433
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+|++-+.
T Consensus 71 ~~~ii~lt 78 (232)
T PRK10955 71 QTPVIMLT 78 (232)
T ss_pred CCcEEEEE
Confidence 47887765
No 339
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=21.11 E-value=4.8e+02 Score=27.75 Aligned_cols=102 Identities=18% Similarity=0.286 Sum_probs=54.8
Q ss_pred cEEEEEECCCCchHHHH---HHHHHhC-CCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC---Cch----
Q 046651 5 VRTLLIDNYDSYTYNIY---QELSTIN-GVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP---EDI---- 73 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~---q~L~~v~-G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~---~d~---- 73 (392)
+++++||.-+....++. +.|.... ++ ++++ -+-.+.++...+. +..+|+|.++.|||+.... ..+
T Consensus 241 vdvivvD~a~g~~~~vl~~i~~i~~~~p~~-~vi~-g~v~t~e~a~~l~--~aGad~i~vg~g~gs~~~~r~~~~~g~p~ 316 (486)
T PRK05567 241 VDVLVVDTAHGHSEGVLDRVREIKAKYPDV-QIIA-GNVATAEAARALI--EAGADAVKVGIGPGSICTTRIVAGVGVPQ 316 (486)
T ss_pred CCEEEEECCCCcchhHHHHHHHHHhhCCCC-CEEE-eccCCHHHHHHHH--HcCCCEEEECCCCCccccceeecCCCcCH
Confidence 45777884333333333 4444323 22 3334 3334567665533 2578999999999863221 122
Q ss_pred -hHHHHHHHHc--CCCCEEE---E-cHHHHHHHHHhCCeeeecC
Q 046651 74 -GICLRVLLEC--WDVPILG---V-CLGHQALGFVHGADIVHAP 110 (392)
Q Consensus 74 -gi~~~ll~~~--~~iPILG---V-CLGhQ~La~a~Gg~V~~ap 110 (392)
....++.+.+ .++||+. | .-|.-+-|.++||..+-.-
T Consensus 317 ~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 317 ITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 1222333222 3788875 3 3455566778899887653
No 340
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=21.03 E-value=5.9e+02 Score=26.00 Aligned_cols=101 Identities=18% Similarity=0.128 Sum_probs=57.7
Q ss_pred EEEEEECCCCchH---HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--------CCchh
Q 046651 6 RTLLIDNYDSYTY---NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--------PEDIG 74 (392)
Q Consensus 6 r~LlIDnyDSyT~---nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--------~~d~g 74 (392)
-++.||.-..... ++.+.|+....-.++++-+- .+.++...+. +..+|.|.++.|||+--. ..+++
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V-~t~e~a~~l~--~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNV-GTPEAVRELE--NAGADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEec-CCHHHHHHHH--HcCcCEEEECCCCCcccccccccCCCCCccH
Confidence 5778887665544 35555555343334444333 3567665533 367999999999996511 11233
Q ss_pred H--HHHHHHHcCCCCEE---EEcHHHH-HHHHHhCCeeeecC
Q 046651 75 I--CLRVLLECWDVPIL---GVCLGHQ-ALGFVHGADIVHAP 110 (392)
Q Consensus 75 i--~~~ll~~~~~iPIL---GVCLGhQ-~La~a~Gg~V~~ap 110 (392)
+ +.++.... ++||+ ||.-+.+ +=+.+.||..+-.-
T Consensus 190 l~ai~~~~~~~-~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 3 33333334 78988 4555555 44556788876654
No 341
>PTZ00376 aspartate aminotransferase; Provisional
Probab=21.00 E-value=3.6e+02 Score=27.31 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=32.9
Q ss_pred chHHHHHHHHHhCCCCeEEEeC---C--CCCHHHHHhhhcccCCcCEEEECCCCCCCCC
Q 046651 16 YTYNIYQELSTINGVPPVVVRN---D--EWTWRDICRYLYEENAFDNIVISPGPGSPAC 69 (392)
Q Consensus 16 yT~nl~q~L~~v~G~~pvVV~n---d--~~~~eel~~~l~e~~~fDgIVISpGPGsp~~ 69 (392)
.+|..|..+.+..|.+++.|+- + ..+++++...+-+...-..+++-+-|.+|+-
T Consensus 132 P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG 190 (404)
T PTZ00376 132 PTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTG 190 (404)
T ss_pred CCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCC
Confidence 3555555566668999988875 1 1246666554421111246777788999875
No 342
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=20.74 E-value=4.5e+02 Score=24.25 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=21.3
Q ss_pred CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCC
Q 046651 28 NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPG 63 (392)
Q Consensus 28 ~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpG 63 (392)
.|..+.++..+....+.+...+ ....+|||||.+.
T Consensus 39 ~g~~~~v~~~~~~~~~~~~~~l-~~~~~dgiii~~~ 73 (275)
T cd06295 39 RGYDLLLSFVSSPDRDWLARYL-ASGRADGVILIGQ 73 (275)
T ss_pred cCCEEEEEeCCchhHHHHHHHH-HhCCCCEEEEeCC
Confidence 7888887755433233343333 2367999999653
No 343
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=20.72 E-value=5.5e+02 Score=25.65 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=34.0
Q ss_pred chHHHHHHHHHhCCCCeEEEeCCC----CCHHHHHhhhcc--cCCcCEEEECCCCCCCCC
Q 046651 16 YTYNIYQELSTINGVPPVVVRNDE----WTWRDICRYLYE--ENAFDNIVISPGPGSPAC 69 (392)
Q Consensus 16 yT~nl~q~L~~v~G~~pvVV~nd~----~~~eel~~~l~e--~~~fDgIVISpGPGsp~~ 69 (392)
.+|.-|..+.+..|.+++.+.-++ .+++++...+-+ ....+.|+|++ |.+|+-
T Consensus 124 P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~-P~NPTG 182 (374)
T PRK02610 124 PTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVH-PNSPTG 182 (374)
T ss_pred CChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeC-CCCCCC
Confidence 466666666667899988886542 345666554411 03578898874 777764
No 344
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=20.61 E-value=3.8e+02 Score=23.91 Aligned_cols=78 Identities=17% Similarity=0.319 Sum_probs=43.1
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
.++||||....+...+-..|.. .|..+..+.. .++....+ ....+|.|++...- |.. ..+..+ +.++...
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~----~~~~~~~~-~~~~~dlvl~d~~~--~~~-~g~~~~-~~l~~~~ 80 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQA-ASYATTLLSH----GDEVLPYV-RQTPPDLILLDLML--PGT-DGLTLC-REIRRFS 80 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-CCCEEEEeCC----HHHHHHHH-hhCCCCEEEEeCCC--CCC-CHHHHH-HHHHhcC
Confidence 4899999876666677777776 5765433322 23333322 23568999984221 211 112222 3333444
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+|++-++
T Consensus 81 ~~pii~l~ 88 (240)
T PRK10710 81 DIPIVMVT 88 (240)
T ss_pred CCCEEEEE
Confidence 78887765
No 345
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=20.24 E-value=4.2e+02 Score=29.43 Aligned_cols=37 Identities=32% Similarity=0.402 Sum_probs=25.7
Q ss_pred cEEEEEECCCCchHH-----------HHHHHHHhCCCCeEEEeCCCCCH
Q 046651 5 VRTLLIDNYDSYTYN-----------IYQELSTINGVPPVVVRNDEWTW 42 (392)
Q Consensus 5 ~r~LlIDnyDSyT~n-----------l~q~L~~v~G~~pvVV~nd~~~~ 42 (392)
+=+||||+-.|.... |.+.|.. +|+++.|+-+....|
T Consensus 394 ~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~-~gIp~eVlGFtt~aw 441 (600)
T TIGR01651 394 VVTLLIDNSGSMRGRPITVAATCADILARTLER-CGVKVEILGFTTRAW 441 (600)
T ss_pred EEEEEEECCccCCCCHHHHHHHHHHHHHHHHHH-CCCCeEEEeeccccc
Confidence 458999999987432 3344554 799999987765444
No 346
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=20.09 E-value=1.3e+02 Score=28.26 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=30.6
Q ss_pred EEEEEECCCC---chHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCC
Q 046651 6 RTLLIDNYDS---YTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG 65 (392)
Q Consensus 6 r~LlIDnyDS---yT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPG 65 (392)
.+.|.|-... -.+.+.+.+.+..|.++.|....+ +++.. ...|-||.+=-+|
T Consensus 30 ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd--~~eAl------~gADfVi~~irvG 84 (183)
T PF02056_consen 30 EIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTD--RREAL------EGADFVINQIRVG 84 (183)
T ss_dssp EEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESS--HHHHH------TTESEEEE---TT
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCC--HHHHh------CCCCEEEEEeeec
Confidence 5667776332 234566777667899887765554 55543 4688888865554
Done!