Query 046651
Match_columns 392
No_of_seqs 248 out of 1749
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 04:41:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qdl_B Protein (anthranilate s 100.0 8.3E-40 2.8E-44 299.1 22.4 187 5-255 1-193 (195)
2 1i1q_B Anthranilate synthase c 100.0 4.3E-39 1.5E-43 293.4 23.1 189 5-258 1-190 (192)
3 2a9v_A GMP synthase; structura 100.0 1.4E-37 4.7E-42 288.9 18.7 190 4-261 13-203 (212)
4 1wl8_A GMP synthase [glutamine 100.0 2E-36 6.7E-41 274.5 23.8 185 5-258 1-187 (189)
5 2vpi_A GMP synthase; guanine m 100.0 2.3E-35 7.8E-40 275.8 16.4 186 5-258 25-211 (218)
6 3r75_A Anthranilate/para-amino 100.0 1.4E-34 4.9E-39 308.6 16.3 186 4-259 446-635 (645)
7 2ywb_A GMP synthase [glutamine 100.0 8.4E-34 2.9E-38 294.6 17.4 185 6-258 1-185 (503)
8 3uow_A GMP synthetase; structu 100.0 4E-33 1.4E-37 293.0 21.9 186 4-254 7-226 (556)
9 1gpm_A GMP synthetase, XMP ami 100.0 4.6E-33 1.6E-37 290.5 20.0 189 4-255 7-199 (525)
10 3tqi_A GMP synthase [glutamine 100.0 1.5E-33 5.1E-38 294.4 15.9 187 5-254 11-201 (527)
11 4gud_A Imidazole glycerol phos 100.0 1.3E-33 4.5E-38 259.4 10.6 178 6-259 4-206 (211)
12 1a9x_B Carbamoyl phosphate syn 100.0 1.5E-31 5E-36 269.6 22.2 183 4-260 190-376 (379)
13 2vxo_A GMP synthase [glutamine 100.0 7.5E-32 2.6E-36 289.8 14.6 185 5-257 30-215 (697)
14 1o1y_A Conserved hypothetical 100.0 4.2E-29 1.4E-33 236.0 17.9 187 5-263 13-206 (239)
15 3fij_A LIN1909 protein; 11172J 100.0 7.6E-29 2.6E-33 236.0 19.4 180 18-261 31-244 (254)
16 3l7n_A Putative uncharacterize 100.0 6.8E-29 2.3E-33 233.5 16.6 182 5-260 1-197 (236)
17 2ywj_A Glutamine amidotransfer 100.0 8.3E-30 2.8E-34 230.1 9.0 174 5-258 1-184 (186)
18 3m3p_A Glutamine amido transfe 100.0 1.1E-28 3.7E-33 235.8 17.1 180 4-254 3-192 (250)
19 2w7t_A CTP synthetase, putativ 100.0 4.3E-30 1.5E-34 247.7 6.4 196 5-260 9-257 (273)
20 1gpw_B Amidotransferase HISH; 99.9 2.1E-28 7.1E-33 223.5 9.7 177 5-258 1-198 (201)
21 3d54_D Phosphoribosylformylgly 99.9 6.2E-27 2.1E-31 214.3 16.0 188 5-257 3-211 (213)
22 1l9x_A Gamma-glutamyl hydrolas 99.9 4.3E-28 1.5E-32 238.2 7.9 201 5-260 31-279 (315)
23 1vco_A CTP synthetase; tetrame 99.9 3E-27 1E-31 247.8 6.8 199 7-261 310-547 (550)
24 1ka9_H Imidazole glycerol phos 99.9 5.5E-26 1.9E-30 207.7 12.9 174 5-257 3-200 (200)
25 2nv0_A Glutamine amidotransfer 99.9 1.7E-25 5.8E-30 203.4 14.8 181 5-262 2-192 (196)
26 2v4u_A CTP synthase 2; pyrimid 99.9 3.8E-26 1.3E-30 221.9 10.6 193 4-260 25-277 (289)
27 1q7r_A Predicted amidotransfer 99.9 2.2E-25 7.5E-30 207.1 9.9 181 3-261 22-213 (219)
28 1s1m_A CTP synthase; CTP synth 99.9 4.5E-26 1.5E-30 238.6 4.6 194 7-263 299-542 (545)
29 2ywd_A Glutamine amidotransfer 99.9 2.6E-24 9E-29 194.0 6.7 173 4-257 2-189 (191)
30 1jvn_A Glutamine, bifunctional 99.9 1.4E-24 4.7E-29 228.1 5.1 184 4-257 4-215 (555)
31 2iss_D Glutamine amidotransfer 99.9 7.6E-23 2.6E-27 188.4 11.4 173 3-257 19-207 (208)
32 3nva_A CTP synthase; rossman f 99.9 4.5E-23 1.5E-27 214.2 9.2 193 3-258 292-533 (535)
33 2abw_A PDX2 protein, glutamina 99.8 5.3E-21 1.8E-25 177.9 12.5 192 3-261 2-217 (227)
34 2vdj_A Homoserine O-succinyltr 99.7 1.1E-16 3.6E-21 157.0 17.3 175 3-242 34-240 (301)
35 2h2w_A Homoserine O-succinyltr 99.7 1.2E-16 4.2E-21 157.2 17.0 178 3-242 46-251 (312)
36 3ugj_A Phosphoribosylformylgly 99.1 8.1E-10 2.8E-14 125.7 18.9 207 3-256 1046-1301(1303)
37 3l4e_A Uncharacterized peptida 98.1 2.2E-06 7.6E-11 79.2 4.6 90 4-100 27-128 (206)
38 1fy2_A Aspartyl dipeptidase; s 98.0 2.4E-06 8.3E-11 79.8 2.9 87 4-101 31-129 (229)
39 1oi4_A Hypothetical protein YH 97.4 0.00023 7.9E-09 64.0 6.8 89 5-101 24-134 (193)
40 2vrn_A Protease I, DR1199; cys 96.9 0.00066 2.3E-08 60.3 4.5 91 4-101 9-124 (190)
41 3l18_A Intracellular protease 96.8 0.0012 4.1E-08 57.5 5.5 90 4-101 2-111 (168)
42 2ab0_A YAJL; DJ-1/THIJ superfa 96.6 0.0017 5.9E-08 58.8 4.7 91 5-101 3-116 (205)
43 2rk3_A Protein DJ-1; parkinson 96.6 0.0026 8.8E-08 57.0 5.7 90 5-101 4-115 (197)
44 4hcj_A THIJ/PFPI domain protei 96.6 0.0034 1.2E-07 56.3 6.5 90 5-101 8-117 (177)
45 3cne_A Putative protease I; st 96.5 0.0056 1.9E-07 53.6 7.5 91 5-101 3-120 (175)
46 1vhq_A Enhancing lycopene bios 96.4 0.0037 1.3E-07 57.7 6.0 50 53-102 89-150 (232)
47 3l3b_A ES1 family protein; ssg 95.9 0.021 7.3E-07 53.6 8.5 96 6-102 25-168 (242)
48 4e08_A DJ-1 beta; flavodoxin-l 95.7 0.012 4.2E-07 52.2 5.4 89 6-101 7-116 (190)
49 1u9c_A APC35852; structural ge 95.2 0.018 6.3E-07 52.3 5.1 49 53-101 88-138 (224)
50 3f5d_A Protein YDEA; unknow pr 95.1 0.072 2.5E-06 48.5 8.6 75 18-101 20-109 (206)
51 3ej6_A Catalase-3; heme, hydro 94.8 0.095 3.2E-06 56.4 9.9 91 5-101 538-646 (688)
52 3efe_A THIJ/PFPI family protei 94.8 0.09 3.1E-06 47.7 8.4 47 53-101 73-121 (212)
53 2fex_A Conserved hypothetical 94.7 0.12 4E-06 45.7 8.7 76 19-101 19-110 (188)
54 3uk7_A Class I glutamine amido 94.3 0.049 1.7E-06 53.9 5.7 48 53-101 281-330 (396)
55 3uk7_A Class I glutamine amido 93.9 0.066 2.2E-06 53.0 5.8 89 5-101 13-137 (396)
56 3ot1_A 4-methyl-5(B-hydroxyeth 93.8 0.024 8.3E-07 51.3 2.4 89 6-101 11-121 (208)
57 2iuf_A Catalase; oxidoreductas 93.5 0.059 2E-06 58.0 5.0 91 5-101 530-648 (688)
58 1rw7_A YDR533CP; alpha-beta sa 93.3 0.02 6.9E-07 53.2 0.9 49 53-101 97-147 (243)
59 3ttv_A Catalase HPII; heme ori 93.1 0.043 1.5E-06 59.5 3.2 88 5-101 601-708 (753)
60 1sy7_A Catalase 1; heme oxidat 92.3 0.094 3.2E-06 56.7 4.4 92 5-103 535-646 (715)
61 3gra_A Transcriptional regulat 91.8 0.15 5.3E-06 45.9 4.7 46 53-101 70-117 (202)
62 3fse_A Two-domain protein cont 91.6 0.17 5.8E-06 50.5 5.1 88 6-101 12-121 (365)
63 1z0s_A Probable inorganic poly 91.6 0.16 5.4E-06 49.0 4.7 73 3-95 28-101 (278)
64 3n7t_A Macrophage binding prot 90.9 0.028 9.6E-07 53.0 -1.3 49 53-101 104-154 (247)
65 1n57_A Chaperone HSP31, protei 90.1 0.096 3.3E-06 50.3 1.7 50 53-102 144-195 (291)
66 3kkl_A Probable chaperone prot 89.9 0.035 1.2E-06 52.1 -1.6 49 53-101 97-147 (244)
67 3er6_A Putative transcriptiona 89.7 0.28 9.6E-06 44.4 4.4 49 53-101 73-124 (209)
68 3noq_A THIJ/PFPI family protei 88.2 0.31 1.1E-05 44.9 3.6 95 5-101 6-113 (231)
69 3eod_A Protein HNR; response r 87.9 1.1 3.9E-05 35.3 6.4 82 3-93 6-87 (130)
70 3f6c_A Positive transcription 87.3 1.2 4.2E-05 35.2 6.3 81 4-93 1-82 (134)
71 2rjn_A Response regulator rece 86.8 1 3.5E-05 36.9 5.7 83 3-94 6-88 (154)
72 2qr3_A Two-component system re 86.8 0.86 2.9E-05 36.3 5.1 84 4-93 3-88 (140)
73 3grc_A Sensor protein, kinase; 86.2 1.4 4.8E-05 35.2 6.1 84 3-95 5-90 (140)
74 3jte_A Response regulator rece 86.0 1.3 4.5E-05 35.5 5.8 83 3-93 2-85 (143)
75 2rdm_A Response regulator rece 85.6 1.9 6.3E-05 33.9 6.5 84 3-93 4-87 (132)
76 3i42_A Response regulator rece 85.4 0.99 3.4E-05 35.5 4.7 81 3-92 2-84 (127)
77 1qkk_A DCTD, C4-dicarboxylate 85.2 1 3.5E-05 36.9 4.8 81 3-92 2-82 (155)
78 3cz5_A Two-component response 85.1 1.1 3.8E-05 36.6 5.1 83 3-92 4-86 (153)
79 2zay_A Response regulator rece 85.1 0.96 3.3E-05 36.6 4.6 81 4-93 8-90 (147)
80 2pl1_A Transcriptional regulat 84.7 2.3 7.8E-05 32.8 6.5 79 5-92 1-79 (121)
81 3cg4_A Response regulator rece 84.6 1.2 4.2E-05 35.6 5.0 81 3-92 6-88 (142)
82 3hzh_A Chemotaxis response reg 84.4 1.6 5.4E-05 36.1 5.7 80 5-93 37-119 (157)
83 3hdg_A Uncharacterized protein 84.3 1.1 3.6E-05 35.8 4.5 81 4-93 7-87 (137)
84 3ewn_A THIJ/PFPI family protei 83.5 0.38 1.3E-05 45.3 1.6 89 5-101 24-133 (253)
85 2qxy_A Response regulator; reg 83.3 0.88 3E-05 36.6 3.6 80 4-93 4-83 (142)
86 2j48_A Two-component sensor ki 83.3 1.4 4.9E-05 33.3 4.7 78 5-92 2-82 (119)
87 3cnb_A DNA-binding response re 83.2 2 6.8E-05 34.2 5.7 81 4-93 8-92 (143)
88 3hv2_A Response regulator/HD d 82.6 1.8 6.1E-05 35.4 5.3 81 4-93 14-94 (153)
89 3hdv_A Response regulator; PSI 82.6 2 6.8E-05 34.1 5.5 82 4-93 7-89 (136)
90 3mgk_A Intracellular protease/ 82.3 0.37 1.3E-05 43.7 1.0 48 53-101 64-113 (211)
91 4e7p_A Response regulator; DNA 82.2 1.6 5.4E-05 35.6 4.8 83 4-93 20-102 (150)
92 3kht_A Response regulator; PSI 81.5 4.9 0.00017 32.2 7.5 83 3-93 4-89 (144)
93 3qvl_A Putative hydantoin race 81.5 6.2 0.00021 36.7 9.1 94 4-106 1-112 (245)
94 3gt7_A Sensor protein; structu 81.4 2 6.7E-05 35.4 5.1 79 4-92 7-88 (154)
95 3bhn_A THIJ/PFPI domain protei 81.0 0.27 9.4E-06 45.7 -0.4 48 53-101 79-128 (236)
96 2qsj_A DNA-binding response re 80.8 7 0.00024 31.6 8.3 86 3-94 2-87 (154)
97 1k68_A Phytochrome response re 79.9 7.3 0.00025 30.4 7.9 84 4-93 2-93 (140)
98 3hly_A Flavodoxin-like domain; 79.2 8.3 0.00028 32.9 8.6 58 5-69 1-62 (161)
99 3a10_A Response regulator; pho 79.1 5.2 0.00018 30.5 6.7 79 5-92 2-80 (116)
100 2pln_A HP1043, response regula 78.7 3.5 0.00012 32.7 5.7 77 3-93 17-94 (137)
101 1kgs_A DRRD, DNA binding respo 78.7 3.3 0.00011 36.1 5.9 80 5-93 3-82 (225)
102 2gkg_A Response regulator homo 78.7 1.8 6E-05 33.5 3.7 79 5-91 6-86 (127)
103 3cg0_A Response regulator rece 78.6 2.7 9.1E-05 33.3 4.9 83 3-93 8-90 (140)
104 3en0_A Cyanophycinase; serine 78.1 0.47 1.6E-05 45.9 0.2 92 4-100 56-160 (291)
105 3nhm_A Response regulator; pro 78.1 3.6 0.00012 32.3 5.5 79 4-92 4-84 (133)
106 3rfq_A Pterin-4-alpha-carbinol 77.9 3 0.0001 37.6 5.5 78 4-88 30-119 (185)
107 3crn_A Response regulator rece 77.8 4.5 0.00015 32.0 6.1 80 4-92 3-82 (132)
108 3heb_A Response regulator rece 77.1 8.8 0.0003 31.0 7.8 84 4-93 4-97 (152)
109 3h5i_A Response regulator/sens 76.5 15 0.0005 29.3 8.9 82 3-92 4-85 (140)
110 3lua_A Response regulator rece 76.3 8 0.00027 30.7 7.2 82 4-92 4-88 (140)
111 1ys7_A Transcriptional regulat 76.3 4.1 0.00014 35.6 5.9 81 3-92 6-86 (233)
112 2ayx_A Sensor kinase protein R 76.0 4.9 0.00017 36.5 6.5 82 3-93 128-209 (254)
113 3snk_A Response regulator CHEY 75.9 1.4 4.8E-05 35.1 2.5 80 5-93 15-95 (135)
114 3pzy_A MOG; ssgcid, seattle st 74.6 2.7 9.1E-05 36.9 4.1 59 4-66 7-78 (164)
115 3rqi_A Response regulator prot 74.2 3.5 0.00012 35.1 4.8 80 4-92 7-86 (184)
116 1dbw_A Transcriptional regulat 73.0 7.7 0.00026 30.2 6.2 79 4-92 3-82 (126)
117 3uhf_A Glutamate racemase; str 72.9 16 0.00054 34.8 9.4 90 4-101 24-127 (274)
118 4gdh_A DJ-1, uncharacterized p 72.7 0.98 3.4E-05 40.3 0.8 47 54-101 73-122 (194)
119 3r0j_A Possible two component 72.5 4.6 0.00016 36.2 5.3 81 4-93 23-103 (250)
120 1srr_A SPO0F, sporulation resp 72.3 5 0.00017 31.1 4.9 79 5-92 4-82 (124)
121 1mvo_A PHOP response regulator 72.1 5.7 0.00019 31.2 5.2 79 5-92 4-82 (136)
122 3h1g_A Chemotaxis protein CHEY 71.7 12 0.00043 29.2 7.2 82 3-92 4-88 (129)
123 2lpm_A Two-component response 71.5 2.5 8.4E-05 35.3 3.0 77 3-91 7-85 (123)
124 3c3m_A Response regulator rece 71.2 8 0.00027 30.8 6.0 79 4-92 3-84 (138)
125 3t6k_A Response regulator rece 70.6 9.1 0.00031 30.5 6.2 81 3-93 3-86 (136)
126 3cfy_A Putative LUXO repressor 70.3 6.1 0.00021 31.6 5.1 77 6-92 6-83 (137)
127 3mm4_A Histidine kinase homolo 69.7 7.3 0.00025 34.0 5.9 83 3-93 60-159 (206)
128 2zki_A 199AA long hypothetical 69.5 19 0.00064 31.1 8.5 36 4-39 4-42 (199)
129 3iwt_A 178AA long hypothetical 69.5 5.8 0.0002 34.6 5.2 60 4-66 15-93 (178)
130 4dad_A Putative pilus assembly 69.4 6.6 0.00023 31.4 5.1 82 4-93 20-103 (146)
131 1ag9_A Flavodoxin; electron tr 69.2 5.9 0.0002 34.1 5.1 49 5-60 1-51 (175)
132 3kcn_A Adenylate cyclase homol 69.1 5.9 0.0002 32.1 4.8 81 4-93 4-84 (151)
133 1rtt_A Conserved hypothetical 69.0 4 0.00014 35.6 4.0 58 4-68 6-82 (193)
134 3kto_A Response regulator rece 68.6 1.6 5.5E-05 35.0 1.2 82 4-93 6-88 (136)
135 2gk3_A Putative cytoplasmic pr 68.2 5.5 0.00019 37.0 5.0 64 18-91 43-124 (256)
136 2pjk_A 178AA long hypothetical 68.1 3.7 0.00013 36.4 3.6 49 14-65 39-92 (178)
137 2vzf_A NADH-dependent FMN redu 68.0 4.2 0.00014 35.7 3.9 71 5-82 3-94 (197)
138 1sqs_A Conserved hypothetical 67.6 5.1 0.00018 36.4 4.6 33 5-37 2-41 (242)
139 3gl9_A Response regulator; bet 67.4 8.1 0.00028 30.2 5.2 78 5-92 3-83 (122)
140 3to5_A CHEY homolog; alpha(5)b 67.3 6.5 0.00022 33.0 4.8 78 4-92 12-94 (134)
141 2qv0_A Protein MRKE; structura 67.0 8.1 0.00028 30.7 5.2 54 4-61 9-62 (143)
142 3f6p_A Transcriptional regulat 66.8 11 0.00038 29.2 5.9 79 5-93 3-81 (120)
143 1mkz_A Molybdenum cofactor bio 66.5 4.4 0.00015 35.6 3.7 59 3-65 9-80 (172)
144 1y5e_A Molybdenum cofactor bio 66.5 5.1 0.00018 35.0 4.1 58 4-65 13-83 (169)
145 1di6_A MOGA, molybdenum cofact 66.4 6.3 0.00022 35.6 4.8 62 3-65 2-77 (195)
146 2i2c_A Probable inorganic poly 66.2 4.5 0.00016 37.9 4.0 64 5-95 1-71 (272)
147 1k66_A Phytochrome response re 65.9 13 0.00044 29.3 6.2 84 3-93 5-100 (149)
148 2ark_A Flavodoxin; FMN, struct 65.8 25 0.00086 30.3 8.5 67 5-82 5-77 (188)
149 1iow_A DD-ligase, DDLB, D-ALA\ 65.8 12 0.0004 34.3 6.7 53 4-62 2-62 (306)
150 1tmy_A CHEY protein, TMY; chem 65.8 7.8 0.00027 29.7 4.7 80 5-92 3-82 (120)
151 2qvg_A Two component response 65.6 8.3 0.00029 30.5 5.0 81 4-93 7-97 (143)
152 2b4a_A BH3024; flavodoxin-like 64.4 18 0.00063 28.4 6.9 80 3-92 14-95 (138)
153 1zgz_A Torcad operon transcrip 64.3 10 0.00036 29.0 5.2 78 5-92 3-80 (122)
154 2bmv_A Flavodoxin; electron tr 64.2 5.4 0.00018 33.8 3.7 46 5-60 2-50 (164)
155 1czn_A Flavodoxin; FMN binding 63.9 5.3 0.00018 33.9 3.6 49 5-60 1-52 (169)
156 2gwr_A DNA-binding response re 63.8 11 0.00038 33.3 5.9 78 5-92 6-83 (238)
157 2a9o_A Response regulator; ess 63.8 14 0.00048 28.0 5.8 79 5-93 2-80 (120)
158 1xhf_A DYE resistance, aerobic 63.8 16 0.00053 28.0 6.2 79 4-92 3-81 (123)
159 1uuy_A CNX1, molybdopterin bio 63.7 9.8 0.00034 33.0 5.4 60 3-65 4-82 (167)
160 3ilh_A Two component response 63.7 21 0.00071 28.1 7.0 84 4-93 9-100 (146)
161 3lte_A Response regulator; str 63.6 4.5 0.00015 31.7 2.9 52 4-61 6-57 (132)
162 2a5l_A Trp repressor binding p 63.6 32 0.0011 29.4 8.8 35 5-39 6-44 (200)
163 3eul_A Possible nitrate/nitrit 63.4 14 0.00048 29.7 6.1 84 3-93 14-97 (152)
164 2hqr_A Putative transcriptiona 63.2 5.8 0.0002 34.5 3.8 75 5-93 1-76 (223)
165 1jbe_A Chemotaxis protein CHEY 62.4 9.5 0.00032 29.5 4.7 82 3-93 3-87 (128)
166 3c97_A Signal transduction his 62.4 12 0.0004 29.8 5.3 51 5-61 11-61 (140)
167 3n53_A Response regulator rece 62.3 5 0.00017 31.9 3.0 78 4-92 3-83 (140)
168 2jfq_A Glutamate racemase; cel 61.9 25 0.00085 33.2 8.3 80 6-93 24-116 (286)
169 3kbq_A Protein TA0487; structu 61.3 7 0.00024 34.7 4.1 93 4-103 3-107 (172)
170 1yio_A Response regulatory pro 61.2 7.9 0.00027 33.2 4.3 80 4-92 4-83 (208)
171 1mb3_A Cell division response 61.2 11 0.00039 28.8 4.9 79 5-93 2-83 (124)
172 2an1_A Putative kinase; struct 61.1 9.2 0.00032 35.8 5.1 77 5-95 6-97 (292)
173 1ydg_A Trp repressor binding p 61.0 25 0.00086 30.6 7.7 36 4-39 6-45 (211)
174 3eqz_A Response regulator; str 60.8 4 0.00014 31.9 2.2 92 4-105 3-101 (135)
175 2a6a_A Hypothetical protein TM 60.1 3.6 0.00012 37.8 2.0 47 53-101 65-112 (218)
176 3rht_A (gatase1)-like protein; 60.0 13 0.00044 35.1 5.9 49 5-61 5-57 (259)
177 3ff4_A Uncharacterized protein 59.7 37 0.0013 28.2 8.0 32 6-38 6-40 (122)
178 1u0t_A Inorganic polyphosphate 59.2 9.3 0.00032 36.4 4.8 83 5-95 5-109 (307)
179 2oqr_A Sensory transduction pr 58.6 13 0.00046 32.2 5.4 79 5-93 5-83 (230)
180 1dc7_A NTRC, nitrogen regulati 58.5 3.5 0.00012 31.7 1.4 53 3-61 2-54 (124)
181 2qzj_A Two-component response 58.4 7.4 0.00025 31.1 3.4 79 4-92 4-82 (136)
182 1rli_A Trp repressor binding p 58.3 10 0.00034 32.3 4.4 30 4-35 3-35 (184)
183 1obo_A Flavodoxin; electron tr 58.1 10 0.00035 32.0 4.4 49 5-60 2-52 (169)
184 2pbq_A Molybdenum cofactor bio 57.8 8.6 0.0003 33.9 4.0 59 3-65 4-79 (178)
185 3m6m_D Sensory/regulatory prot 57.6 4.7 0.00016 32.7 2.1 53 3-61 13-65 (143)
186 1qo0_D AMIR; binding protein, 57.6 27 0.00093 29.5 7.1 75 3-92 11-86 (196)
187 2is8_A Molybdopterin biosynthe 55.9 5.1 0.00017 34.8 2.1 50 13-65 19-73 (164)
188 4e5v_A Putative THUA-like prot 55.7 1.3E+02 0.0044 28.3 12.1 149 3-166 3-195 (281)
189 3q9s_A DNA-binding response re 55.5 14 0.00047 33.3 5.1 79 5-93 38-116 (249)
190 3fni_A Putative diflavin flavo 55.5 23 0.0008 30.1 6.3 61 4-71 4-69 (159)
191 3b2n_A Uncharacterized protein 55.1 13 0.00043 29.4 4.3 82 4-92 3-84 (133)
192 2jba_A Phosphate regulon trans 54.0 5.7 0.00019 30.8 1.9 78 5-92 3-83 (127)
193 3t8y_A CHEB, chemotaxis respon 53.1 14 0.00048 30.5 4.4 81 5-93 26-106 (164)
194 2fz5_A Flavodoxin; alpha/beta 52.2 85 0.0029 24.8 9.1 39 15-60 11-52 (137)
195 3eq2_A Probable two-component 52.2 15 0.00052 35.3 5.1 80 4-92 5-84 (394)
196 1ny5_A Transcriptional regulat 51.7 15 0.00051 36.0 5.0 79 5-92 1-79 (387)
197 1i3c_A Response regulator RCP1 51.6 71 0.0024 25.4 8.5 82 4-92 8-98 (149)
198 2oho_A Glutamate racemase; iso 51.5 51 0.0017 30.6 8.5 80 6-93 14-106 (273)
199 1b73_A Glutamate racemase; iso 51.2 55 0.0019 30.0 8.5 81 5-93 1-94 (254)
200 2vyc_A Biodegradative arginine 50.9 16 0.00056 39.2 5.5 82 5-94 1-94 (755)
201 1yt5_A Inorganic polyphosphate 50.7 8.2 0.00028 35.9 2.8 71 5-95 1-74 (258)
202 1s8n_A Putative antiterminator 50.5 20 0.00067 30.7 5.1 78 5-92 14-92 (205)
203 1jlj_A Gephyrin; globular alph 50.4 15 0.00051 32.8 4.3 61 4-66 14-90 (189)
204 3cu5_A Two component transcrip 50.2 17 0.00057 29.1 4.3 81 5-92 3-84 (141)
205 3nbm_A PTS system, lactose-spe 49.0 18 0.00063 29.5 4.3 53 3-61 5-60 (108)
206 3usb_A Inosine-5'-monophosphat 48.8 27 0.00091 35.9 6.5 108 5-115 269-393 (511)
207 2vvt_A Glutamate racemase; iso 48.3 59 0.002 30.6 8.4 80 6-93 26-118 (290)
208 1dz3_A Stage 0 sporulation pro 48.1 18 0.00061 28.2 4.1 81 5-92 3-84 (130)
209 2wc1_A Flavodoxin; electron tr 47.7 7.7 0.00026 33.5 1.9 49 5-60 2-53 (182)
210 1yob_A Flavodoxin 2, flavodoxi 47.0 8.2 0.00028 33.4 2.0 47 5-60 1-52 (179)
211 1zh2_A KDP operon transcriptio 46.8 8.6 0.00029 29.3 1.9 78 5-92 2-79 (121)
212 3c3w_A Two component transcrip 46.1 9.4 0.00032 33.6 2.3 81 5-93 2-83 (225)
213 2g2c_A Putative molybdenum cof 45.2 9 0.00031 33.3 2.0 50 12-65 22-80 (167)
214 1ykg_A SIR-FP, sulfite reducta 44.8 12 0.00042 31.9 2.7 47 5-60 10-62 (167)
215 1t0i_A YLR011WP; FMN binding p 44.6 11 0.00037 32.6 2.4 32 5-36 1-44 (191)
216 3klo_A Transcriptional regulat 44.1 24 0.00083 30.7 4.7 84 3-92 6-90 (225)
217 1a04_A Nitrate/nitrite respons 44.0 15 0.0005 31.7 3.2 82 4-92 5-86 (215)
218 3gfs_A FMN-dependent NADPH-azo 43.8 22 0.00076 30.2 4.3 79 5-92 1-103 (174)
219 2r25_B Osmosensing histidine p 43.1 54 0.0018 25.6 6.3 81 4-92 2-88 (133)
220 2r47_A Uncharacterized protein 42.8 8.2 0.00028 34.1 1.3 41 53-93 83-125 (157)
221 3b6i_A Flavoprotein WRBA; flav 42.8 40 0.0014 28.8 5.8 35 5-39 2-41 (198)
222 3lcm_A SMU.1420, putative oxid 42.4 42 0.0014 29.4 6.0 33 5-37 1-38 (196)
223 3r6m_A YEAZ, resuscitation pro 42.3 6.8 0.00023 35.9 0.8 47 53-101 55-102 (213)
224 2q62_A ARSH; alpha/beta, flavo 41.1 26 0.00088 32.5 4.5 73 4-83 34-124 (247)
225 2jfz_A Glutamate racemase; cel 41.1 1.1E+02 0.0039 27.9 9.0 81 5-93 1-94 (255)
226 3out_A Glutamate racemase; str 40.6 49 0.0017 31.0 6.5 79 6-92 9-101 (268)
227 1t5b_A Acyl carrier protein ph 39.4 37 0.0013 29.0 5.1 34 5-38 2-44 (201)
228 2gel_A Putative GRAM negative 39.3 11 0.00037 34.6 1.6 45 54-100 55-100 (231)
229 2q9u_A A-type flavoprotein; fl 39.0 97 0.0033 29.8 8.5 59 4-69 256-318 (414)
230 4eg0_A D-alanine--D-alanine li 39.0 67 0.0023 29.8 7.2 76 5-91 14-97 (317)
231 3f6r_A Flavodoxin; FMN binding 38.8 32 0.0011 28.1 4.4 49 5-60 2-55 (148)
232 1f4p_A Flavodoxin; electron tr 38.7 27 0.00094 28.5 3.9 49 5-60 1-54 (147)
233 2qv7_A Diacylglycerol kinase D 38.1 30 0.001 33.0 4.6 90 6-103 26-125 (337)
234 4ici_A Putative flavoprotein; 38.0 56 0.0019 28.1 6.0 34 3-36 12-46 (171)
235 1p2f_A Response regulator; DRR 37.8 54 0.0019 28.1 5.9 76 5-92 3-78 (220)
236 2gzm_A Glutamate racemase; enz 37.8 2.2E+02 0.0076 26.1 10.5 81 5-93 4-97 (267)
237 2dwu_A Glutamate racemase; iso 37.6 1E+02 0.0035 28.6 8.2 81 5-93 8-101 (276)
238 3r6w_A FMN-dependent NADH-azor 37.2 43 0.0015 29.4 5.2 33 5-37 2-43 (212)
239 1t0b_A THUA-like protein; treh 36.7 2.5E+02 0.0086 25.7 14.6 111 20-142 37-153 (252)
240 3dzd_A Transcriptional regulat 35.9 30 0.001 33.7 4.2 79 5-92 1-79 (368)
241 2ohh_A Type A flavoprotein FPR 35.0 1E+02 0.0035 29.2 8.0 54 4-60 256-313 (404)
242 2c4w_A 3-dehydroquinate dehydr 34.9 1.1E+02 0.0038 27.4 7.4 62 3-66 8-90 (176)
243 1zuw_A Glutamate racemase 1; ( 34.5 91 0.0031 28.9 7.3 80 5-92 4-97 (272)
244 3ha2_A NADPH-quinone reductase 34.3 66 0.0023 28.1 5.9 70 5-82 1-76 (177)
245 3ksm_A ABC-type sugar transpor 33.8 99 0.0034 27.0 7.1 80 6-92 2-91 (276)
246 3eag_A UDP-N-acetylmuramate:L- 33.3 1.2E+02 0.0041 28.6 8.0 86 4-100 4-102 (326)
247 2fzv_A Putative arsenical resi 32.9 42 0.0014 31.9 4.6 73 4-83 58-149 (279)
248 3rot_A ABC sugar transporter, 32.9 2.1E+02 0.0071 25.5 9.3 80 4-91 3-92 (297)
249 3soz_A ORF 245 protein, cytopl 32.9 17 0.00059 34.0 1.9 34 20-61 38-77 (248)
250 3n0r_A Response regulator; sig 32.2 53 0.0018 30.5 5.2 79 5-92 161-240 (286)
251 3klb_A Putative flavoprotein; 32.2 38 0.0013 28.7 3.9 31 5-35 5-36 (162)
252 2bon_A Lipid kinase; DAG kinas 31.1 47 0.0016 31.7 4.7 92 5-103 30-129 (332)
253 3kyj_B CHEY6 protein, putative 31.0 49 0.0017 26.1 4.2 82 4-92 13-94 (145)
254 3qk7_A Transcriptional regulat 30.8 1.4E+02 0.0046 26.8 7.6 70 14-92 22-95 (294)
255 1gtz_A 3-dehydroquinate dehydr 30.5 47 0.0016 29.3 4.1 61 2-64 4-82 (156)
256 1e5d_A Rubredoxin\:oxygen oxid 30.3 2.1E+02 0.0073 27.0 9.3 54 4-60 252-309 (402)
257 1g8l_A Molybdopterin biosynthe 30.1 30 0.001 34.6 3.3 50 13-65 202-254 (411)
258 1p6q_A CHEY2; chemotaxis, sign 29.8 16 0.00054 28.3 0.9 80 4-92 6-88 (129)
259 4hv4_A UDP-N-acetylmuramate--L 29.7 1.9E+02 0.0066 29.0 9.3 59 5-64 23-91 (494)
260 2jk1_A HUPR, hydrogenase trans 29.4 68 0.0023 25.0 4.7 78 5-92 2-79 (139)
261 3rpe_A MDAB, modulator of drug 29.3 55 0.0019 29.8 4.6 54 4-60 25-89 (218)
262 3fvw_A Putative NAD(P)H-depend 29.3 79 0.0027 27.5 5.6 71 5-82 3-92 (192)
263 3g1w_A Sugar ABC transporter; 29.0 2.7E+02 0.0091 24.7 9.3 79 6-91 6-92 (305)
264 2fcr_A Flavodoxin; electron tr 28.9 23 0.00078 30.2 1.9 38 16-60 12-51 (173)
265 3khj_A Inosine-5-monophosphate 28.1 1.9E+02 0.0064 28.2 8.6 99 6-109 119-235 (361)
266 1b93_A Protein (methylglyoxal 28.1 84 0.0029 27.3 5.4 78 22-101 50-129 (152)
267 1vmd_A MGS, methylglyoxal synt 28.0 1.2E+02 0.0041 27.1 6.5 79 21-101 65-145 (178)
268 2hna_A Protein MIOC, flavodoxi 27.7 57 0.0019 26.7 4.1 45 5-60 2-52 (147)
269 5nul_A Flavodoxin; electron tr 27.3 75 0.0026 25.5 4.7 39 15-60 10-51 (138)
270 3jy6_A Transcriptional regulat 27.2 2.8E+02 0.0096 24.3 9.0 78 5-92 8-92 (276)
271 3hgm_A Universal stress protei 27.2 2.2E+02 0.0076 22.2 7.7 60 28-91 82-147 (147)
272 2fts_A Gephyrin; gephyrin, neu 27.0 33 0.0011 34.3 2.9 50 13-65 206-258 (419)
273 1wu2_A MOEA protein, molybdopt 26.7 29 0.00098 34.6 2.4 50 13-65 209-261 (396)
274 2xw6_A MGS, methylglyoxal synt 26.7 1.2E+02 0.0042 25.7 6.1 81 21-103 41-123 (134)
275 4avf_A Inosine-5'-monophosphat 26.3 3.3E+02 0.011 27.5 10.3 106 5-113 242-364 (490)
276 1w25_A Stalked-cell differenti 26.1 1.1E+02 0.0038 29.6 6.5 78 5-92 2-82 (459)
277 1uz5_A MOEA protein, 402AA lon 25.7 30 0.001 34.6 2.3 50 13-65 205-257 (402)
278 2jfn_A Glutamate racemase; cel 25.5 2.8E+02 0.0095 25.7 9.0 87 5-99 22-122 (285)
279 3luf_A Two-component system re 25.4 1E+02 0.0035 27.7 5.8 81 4-92 124-206 (259)
280 1ycg_A Nitric oxide reductase; 25.2 1.4E+02 0.0048 28.3 6.9 52 4-60 251-308 (398)
281 3s2y_A Chromate reductase; ura 30.3 16 0.00054 32.5 0.0 32 4-35 6-42 (199)
282 3d7n_A Flavodoxin, WRBA-like p 23.9 72 0.0025 27.5 4.2 57 4-68 6-64 (193)
283 3n8k_A 3-dehydroquinate dehydr 23.8 1.2E+02 0.0042 27.0 5.6 61 4-66 28-106 (172)
284 1a2o_A CHEB methylesterase; ba 23.3 67 0.0023 31.0 4.2 81 4-92 3-83 (349)
285 1e2b_A Enzyme IIB-cellobiose; 23.0 2.2E+02 0.0074 22.6 6.7 52 5-62 4-58 (106)
286 1dcf_A ETR1 protein; beta-alph 22.9 42 0.0014 26.2 2.3 52 3-61 6-57 (136)
287 1d4a_A DT-diaphorase, quinone 22.8 90 0.0031 28.9 4.9 35 4-38 2-42 (273)
288 2rgy_A Transcriptional regulat 21.8 4.1E+02 0.014 23.4 9.2 79 5-92 9-97 (290)
289 2dr1_A PH1308 protein, 386AA l 21.6 3.6E+02 0.012 24.5 8.9 60 6-68 97-159 (386)
290 3l6u_A ABC-type sugar transpor 21.6 2.5E+02 0.0085 24.7 7.5 80 5-92 9-96 (293)
291 4af0_A Inosine-5'-monophosphat 21.2 2.6E+02 0.0089 29.3 8.3 102 5-110 294-413 (556)
292 3ist_A Glutamate racemase; str 21.0 4.2E+02 0.014 24.5 9.2 84 5-96 6-103 (269)
293 1zgh_A Methionyl-tRNA formyltr 20.9 35 0.0012 32.2 1.6 57 3-66 29-88 (260)
294 3bre_A Probable two-component 20.4 35 0.0012 31.8 1.5 80 4-92 18-100 (358)
295 3sgz_A Hydroxyacid oxidase 2; 20.2 3.4E+02 0.012 26.5 8.7 94 15-112 203-303 (352)
296 4hs4_A Chromate reductase; tri 20.2 94 0.0032 27.4 4.2 26 4-29 6-34 (199)
No 1
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=100.00 E-value=8.3e-40 Score=299.09 Aligned_cols=187 Identities=48% Similarity=0.782 Sum_probs=163.3
Q ss_pred cE-EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 5 VR-TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 5 ~r-~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
|| |+||||++||++++.++|++ .|++++++++++.+++++.. ..+|+|||+||||++....+.++..+++++
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~-----~~~dglil~gG~~~~~~~~~~~~~~~~i~~~ 74 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGE-LGSYPIVIRNDEISIKGIER-----IDPDRLIISPGPGTPEKREDIGVSLDVIKYL 74 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHH-TTCEEEEEETTTSCHHHHHH-----HCCSEEEECCCSSCTTSHHHHTTHHHHHHHH
T ss_pred CCEEEEEECCCchHHHHHHHHHh-CCCEEEEEeCCCCCHHHHhh-----CCCCEEEECCCCCChhhhhhhhHHHHHHHHh
Confidence 66 99999999999999999998 79999999998666777754 369999999999998764444455566654
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEe-cCC--cccccCCCCCCcceEEEeeecceeecCCCCCCcE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVH-NGD--RLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELI 159 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h-~g~--~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~ 159 (392)
..++||||||+|||+|+.++||+|.+.+...||....+.+ .++ +||+++|.. +.+.++|++.|+. +|++++
T Consensus 75 ~~~~PvLGIC~G~QlL~~~~gg~v~~~~~~~~g~~~~v~~~~~~~~~l~~~~~~~----~~v~~~H~~~v~~--l~~~~~ 148 (195)
T 1qdl_B 75 GKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKE----FKATRYHSLVVDE--VHRPLI 148 (195)
T ss_dssp TTTSCEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEEECCSSCCSTTTTCCSE----EEEEEEEEEEEEC--CCTTEE
T ss_pred cCCCcEEEEehHHHHHHHHhCCEEeccCCCcCCCceEEEECCCCHhHHHhcCCCc----eEEeccccchhhh--CCCCcE
Confidence 3589999999999999999999999988788998777776 567 899999876 9999999999986 999999
Q ss_pred EEEEe-cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccC
Q 046651 160 PIAWS-NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHP 238 (392)
Q Consensus 160 ~iAwt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHP 238 (392)
++|++ ++ + .++|+++.++|+|||||||
T Consensus 149 vla~s~~~--------------g--------------------------------------~i~a~~~~~~~~~gvQfHP 176 (195)
T 1qdl_B 149 VDAISAED--------------N--------------------------------------EIMAIHHEEYPIYGVQFHP 176 (195)
T ss_dssp EEEEESSS--------------C--------------------------------------CEEEEEESSSSEEEESSBT
T ss_pred EEEEECCC--------------C--------------------------------------cEEEEEeCCCCEEEEecCC
Confidence 99999 66 6 8999999888999999999
Q ss_pred CCCCCchhHHHHHHHHH
Q 046651 239 ESIATCYGSKILRNFRE 255 (392)
Q Consensus 239 Esiat~~G~~I~~NF~~ 255 (392)
|+..++.|.+||+||++
T Consensus 177 E~~~~~~g~~l~~~f~~ 193 (195)
T 1qdl_B 177 ESVGTSLGYKILYNFLN 193 (195)
T ss_dssp TSTTCTTHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHh
Confidence 99888999999999987
No 2
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=100.00 E-value=4.3e-39 Score=293.36 Aligned_cols=189 Identities=34% Similarity=0.529 Sum_probs=154.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
+||+||||+||||+||.++|++ .|+++++++++.. ++++...+.. ...+++||+||||+|... +....+++. .
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~-~G~~~~v~~~~~~-~~~i~~~l~~-~~~~~iil~gGpg~~~~~---~~~~~l~~~~~ 74 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRT-NGHNVVIYRNHIP-AQTLIDRLAT-MKNPVLMLSPGPGVPSEA---GCMPELLTRLR 74 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHH-TTCEEEEEETTSC-SHHHHHHHTT-CSSEEEEECCCSSCGGGS---TTHHHHHHHHB
T ss_pred CcEEEEECCccHHHHHHHHHHH-CCCeEEEEECCCC-HHHHHHHhhh-ccCCeEEECCCCcCchhC---chHHHHHHHHh
Confidence 6899999999999999999998 7999999999853 6666544311 135579999999998642 334445544 3
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEE
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAW 163 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAw 163 (392)
.++||||||+|||+|+.++||++.+.+.+.+|+...+.+++++||+++|.. +.+++||++.|.. +|++++++|.
T Consensus 75 ~~~PilGIC~G~Qll~~~~Gg~v~~~~~~~~g~~~~~~~~~~~l~~~~~~~----~~v~~~H~~~v~~--lp~~~~v~a~ 148 (192)
T 1i1q_B 75 GKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKATSIEHDGQAMFAGLANP----LPVARYHSLVGSN--VPAGLTINAH 148 (192)
T ss_dssp TTBCEEEETHHHHHHHHHTSCCCCC---CCSSEEEEEEECCCGGGTTSCSS----EEEEECCC---CC--CCTTCEEEEE
T ss_pred cCCCEEEECcChHHHHHHhCCEEEeCCCcEecceeEEecCCChHHhcCCCC----cEEEechhhHhhh--CCCccEEEEC
Confidence 589999999999999999999999887888998887778888999999877 9999999999976 9999999984
Q ss_pred ecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCC
Q 046651 164 SNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243 (392)
Q Consensus 164 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat 243 (392)
+ + + .++|++|.+.|+||||||||+..+
T Consensus 149 ~-~--------------~--------------------------------------~~~ai~~~~~~~~gvQfHPE~~~~ 175 (192)
T 1i1q_B 149 F-N--------------G--------------------------------------MVMAVRHDADRVCGFQFHPESILT 175 (192)
T ss_dssp E-T--------------T--------------------------------------EEEEEEETTTTEEEESSBTTSTTC
T ss_pred C-C--------------C--------------------------------------cEEEEEECCCCEEEEEccCcccCC
Confidence 3 3 3 799999999999999999999889
Q ss_pred chhHHHHHHHHHHHH
Q 046651 244 CYGSKILRNFREITE 258 (392)
Q Consensus 244 ~~G~~I~~NF~~l~~ 258 (392)
+.|.+||+||++++.
T Consensus 176 ~~g~~il~nf~~~~~ 190 (192)
T 1i1q_B 176 TQGARLLEQTLAWAQ 190 (192)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHh
Confidence 999999999998753
No 3
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=100.00 E-value=1.4e-37 Score=288.95 Aligned_cols=190 Identities=31% Similarity=0.522 Sum_probs=164.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCC-CCCCCCCCchhHHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPG-PGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpG-PGsp~~~~d~gi~~~ll~~ 82 (392)
.||+|+||++|+|++++.++|.+ .|.+++++++++ +.+++ ..+|+|||+|| |++++...+...+.+.+.+
T Consensus 13 ~~~i~~id~~~~~~~~~~~~l~~-~G~~~~vv~~~~-~~~~l-------~~~DglIl~GG~p~~~~~~~~~~~l~~~~~~ 83 (212)
T 2a9v_A 13 MLKIYVVDNGGQWTHREWRVLRE-LGVDTKIVPNDI-DSSEL-------DGLDGLVLSGGAPNIDEELDKLGSVGKYIDD 83 (212)
T ss_dssp CCBEEEEEESCCTTCHHHHHHHH-TTCBCCEEETTS-CGGGG-------TTCSEEEEEEECSCGGGTGGGHHHHHHHHHH
T ss_pred cceEEEEeCCCccHHHHHHHHHH-CCCEEEEEeCCC-CHHHH-------hCCCEEEECCCCCCCCcccccchhHHHHHHh
Confidence 48999999999999999999998 699999999876 35554 34999999999 8998764333444455555
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iA 162 (392)
. ++||||||+|||+|+.++||+|.+.+.+.+|+.......+++||++++.. +.|+.+|++.|+. +|++++++|
T Consensus 84 ~-~~PiLGIC~G~Qll~~~lGg~v~~~~~~~~G~~~v~~~~~~~l~~~~~~~----~~v~~~H~~~v~~--l~~~~~vlA 156 (212)
T 2a9v_A 84 H-NYPILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVMHSENIFGGLPSE----ITVWENHNDEIIN--LPDDFTLAA 156 (212)
T ss_dssp C-CSCEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEESCCCGGGTTCCSE----EEEEEEEEEEEES--CCTTEEEEE
T ss_pred C-CCCEEEEChHHHHHHHHhCCEEEcCCCcccCceeeEECCCChhHhcCCCc----eEEEeEhhhhHhh--CCCCcEEEE
Confidence 4 89999999999999999999999998889998766555678999999876 8999999999987 999999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
++++ + .++|+++.+.++||||||||+..
T Consensus 157 ~s~d--------------~--------------------------------------~i~ai~~~~~~i~gvQfHPE~~~ 184 (212)
T 2a9v_A 157 SSAT--------------C--------------------------------------QVQGFYHKTRPIYATQFHPEVEH 184 (212)
T ss_dssp ECSS--------------C--------------------------------------SCSEEEESSSSEEEESSCTTSTT
T ss_pred EeCC--------------C--------------------------------------CEEEEEECCCCEEEEEeCCCCCC
Confidence 9987 6 79999998889999999999988
Q ss_pred CchhHHHHHHHHHHHHHhh
Q 046651 243 TCYGSKILRNFREITEDYW 261 (392)
Q Consensus 243 t~~G~~I~~NF~~l~~~~~ 261 (392)
++.|.+||+||++++..+.
T Consensus 185 ~~~g~~l~~~F~~~~~~~~ 203 (212)
T 2a9v_A 185 TQYGRDIFRNFIGICASYR 203 (212)
T ss_dssp STTHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhh
Confidence 8899999999999987653
No 4
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=100.00 E-value=2e-36 Score=274.49 Aligned_cols=185 Identities=30% Similarity=0.489 Sum_probs=157.6
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
|||+|||++++|++++.+.|++ .|.+++++++++ +++++.. ..+|+|||+||| +|.. .+...+++++
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~-~G~~~~~~~~~~-~~~~~~~-----~~~dglil~Gg~-~~~~---~~~~~~~i~~~~ 69 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRY-LGVETKIIPNTT-PLEEIKA-----MNPKGIIFSGGP-SLEN---TGNCEKVLEHYD 69 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHH-TTCEEEEEETTC-CHHHHHH-----TCCSEEEECCCS-CTTC---CTTHHHHHHTGG
T ss_pred CeEEEEECCCchHHHHHHHHHH-CCCeEEEEECCC-ChHHhcc-----cCCCEEEECCCC-Chhh---hhhHHHHHHHHh
Confidence 7899999999999999999998 699999999887 4667654 569999999998 7654 3444566665
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iA 162 (392)
..++||||||+|||+|+.++||+|.+.+.+.+|+.......+++||++++.. +.+..+|...+.. ||++++++|
T Consensus 70 ~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~~G~~~~~~~~~~~l~~~~~~~----~~~~~~h~~~v~~--l~~~~~vla 143 (189)
T 1wl8_A 70 EFNVPILGICLGHQLIAKFFGGKVGRGEKAEYSLVEIEIIDEXEIFKGLPKR----LKVWESHMDEVKE--LPPKFKILA 143 (189)
T ss_dssp GTCSCEEEETHHHHHHHHHHTCEEEECSCCSCEEEEEEESCC--CCTTSCSE----EEEEECCSEEEEE--CCTTEEEEE
T ss_pred hCCCeEEEEcHHHHHHHHHhCCceecCCCcccCceeEEEecCchHHhCCCCc----eEEEEEeeeehhh--CCCCcEEEE
Confidence 3589999999999999999999999988889998776666788899988876 8887777777765 999999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
++++ + .++|+++.++|+||||||||+..
T Consensus 144 ~s~~--------------g--------------------------------------~i~a~~~~~~~~~gvQfHPE~~~ 171 (189)
T 1wl8_A 144 RSET--------------C--------------------------------------PIEAMKHEELPIYGVQFHPEVAH 171 (189)
T ss_dssp EESS--------------C--------------------------------------SCSEEEESSSCEEEESSCTTSTT
T ss_pred EcCC--------------C--------------------------------------CEEEEEeCCceEEEEecCCCcCC
Confidence 9987 6 79999999889999999999988
Q ss_pred CchhHHHHHHHHHHHH
Q 046651 243 TCYGSKILRNFREITE 258 (392)
Q Consensus 243 t~~G~~I~~NF~~l~~ 258 (392)
++.|.+||+||++++.
T Consensus 172 ~~~g~~l~~~f~~~~~ 187 (189)
T 1wl8_A 172 TEKGEEILRNFAKLCG 187 (189)
T ss_dssp STTHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHh
Confidence 8899999999999873
No 5
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=275.78 Aligned_cols=186 Identities=25% Similarity=0.321 Sum_probs=150.0
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
.||+|||++++|++++.+.|.+ .|+++++++.+.. .+++.. ..+|+|||+|||++++......+... +.+ .
T Consensus 25 ~~I~iiD~g~~~~~~i~~~l~~-~G~~~~vv~~~~~-~~~l~~-----~~~dglil~Gg~~~~~~~~~~~~~~~-~~~-~ 95 (218)
T 2vpi_A 25 GAVVILDAGAQYGKVIDRRVRE-LFVQSEIFPLETP-AFAIKE-----QGFRAIIISGGPNSVYAEDAPWFDPA-IFT-I 95 (218)
T ss_dssp TCEEEEECSTTTTHHHHHHHHH-TTCCEEEECTTCC-HHHHHH-----HTCSEEEEEC---------CCCCCGG-GGT-S
T ss_pred CeEEEEECCCchHHHHHHHHHH-CCCEEEEEECCCC-hHHHhh-----cCCCEEEECCCCcccccccchhHHHH-HHH-c
Confidence 4799999999999999999998 7999999998764 666654 46999999999998864322221122 223 4
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.+|+.......+++||++++.. +.|.++|++.|+. ||++++++|++
T Consensus 96 ~~PilGIC~G~Qll~~~~GG~v~~~~~~~~G~~~v~~~~~~~l~~~l~~~----~~v~~~H~~~v~~--l~~~~~vlA~s 169 (218)
T 2vpi_A 96 GKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKE----EVVLLTHGDSVDK--VADGFKVVARS 169 (218)
T ss_dssp SCCEEEETHHHHHHHHHTTCCEEEEEECSCEEEEEEECTTSGGGTTCCSE----EEEEECSEEEESS--CCTTCEEEEEE
T ss_pred CCCEEEEcHHHHHHHHHhCCceEeCCCCcccEEEEEEccCChhHhcCCCC----cEEeehhhhHhhh--cCCCCEEEEEc
Confidence 89999999999999999999999988888897643334578999999876 8999999999976 99999999998
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
+ + .++|+++.+.|+||||||||+..++
T Consensus 170 -~--------------~--------------------------------------~i~ai~~~~~~i~gvQfHPE~~~~~ 196 (218)
T 2vpi_A 170 -G--------------N--------------------------------------IVAGIANESKKLYGAQFHPEVGLTE 196 (218)
T ss_dssp -T--------------T--------------------------------------EEEEEEETTTTEEEESSCTTSTTST
T ss_pred -C--------------C--------------------------------------eEEEEEECCCCEEEEEcCCCCCCCh
Confidence 4 4 8999999999999999999998888
Q ss_pred hhHHHHHHHH-HHHH
Q 046651 245 YGSKILRNFR-EITE 258 (392)
Q Consensus 245 ~G~~I~~NF~-~l~~ 258 (392)
.|++||+||+ +++.
T Consensus 197 ~g~~l~~~F~~~~~~ 211 (218)
T 2vpi_A 197 NGKVILKNFLYDIAG 211 (218)
T ss_dssp THHHHHHHHHTTTTC
T ss_pred hHHHHHHHHHHHHhC
Confidence 9999999999 7763
No 6
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=100.00 E-value=1.4e-34 Score=308.59 Aligned_cols=186 Identities=25% Similarity=0.284 Sum_probs=161.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc--hhHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED--IGICLRVLL 81 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d--~gi~~~ll~ 81 (392)
.++|+||||||||++||.+.|.+ .|+.++|++++.. .++ ..+|+||||||||+|....+ +..+.++|+
T Consensus 446 Gk~IlviD~gdsf~~~l~~~l~~-~G~~v~Vv~~d~~--~~~-------~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~ 515 (645)
T 3r75_A 446 GCRALIVDAEDHFTAMIAQQLSS-LGLATEVCGVHDA--VDL-------ARYDVVVMGPGPGDPSDAGDPRIARLYAWLR 515 (645)
T ss_dssp TCEEEEEESSCTHHHHHHHHHHH-TTCEEEEEETTCC--CCG-------GGCSEEEECCCSSCTTCTTSHHHHHHHHHHH
T ss_pred CCEEEEEECCccHHHHHHHHHHH-CCCEEEEEECCCc--ccc-------cCCCEEEECCCCCChhhhhhhhHHHHHHHHH
Confidence 37999999999999999999998 7999999999875 122 45999999999999987653 233445555
Q ss_pred H--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcE
Q 046651 82 E--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELI 159 (392)
Q Consensus 82 ~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~ 159 (392)
+ ..++||||||+|||+|+.++||+|.+.+.+.||..+.+.+.++.+|.+++.. +.|..+|...+.. +|++++
T Consensus 516 ~a~~~~iPiLGIClG~QlLa~alGG~V~~~~~~~~G~~~~i~~~~~~l~~~~~~~----~~v~~~h~~~~~~--lp~g~~ 589 (645)
T 3r75_A 516 HLIDEGKPFMAVCLSHQILNAILGIPLVRREVPNQGIQVEIDLFGQRERVGFYNT----YVAQTVRDEMDVD--GVGTVA 589 (645)
T ss_dssp HHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEE----EEEBCSCSEEEET--TTEEEE
T ss_pred HHHHCCCCEEEECHHHHHHHHHhCCEEEcCCCcccccceEEeeecCcceecCCCc----EEEEEehhhcccc--CCCCeE
Confidence 4 2499999999999999999999999999999999999988888999988876 8888888887766 999999
Q ss_pred EEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCC
Q 046651 160 PIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPE 239 (392)
Q Consensus 160 ~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPE 239 (392)
++|++++ + .+|||+|.. +||||||||
T Consensus 590 v~A~s~d--------------g--------------------------------------~i~Ai~~~~--~~GVQFHPE 615 (645)
T 3r75_A 590 ISRDPRT--------------G--------------------------------------EVHALRGPT--FSSMQFHAE 615 (645)
T ss_dssp EEECTTT--------------C--------------------------------------BEEEEEETT--EEEESSBTT
T ss_pred EEEEcCC--------------C--------------------------------------cEEEEEcCC--EEEEEeCCe
Confidence 9999987 6 899999864 799999999
Q ss_pred CCCCchhHHHHHHHHHHHHH
Q 046651 240 SIATCYGSKILRNFREITED 259 (392)
Q Consensus 240 siat~~G~~I~~NF~~l~~~ 259 (392)
++.|++|.+||+||++.+..
T Consensus 616 ~~~t~~G~~Ll~nFl~~~~~ 635 (645)
T 3r75_A 616 SVLTVDGPRILGEAITHAIR 635 (645)
T ss_dssp STTCTTHHHHHHHHHHHHTT
T ss_pred ecCCcchHHHHHHHHHHHHh
Confidence 99999999999999998753
No 7
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=100.00 E-value=8.4e-34 Score=294.56 Aligned_cols=185 Identities=26% Similarity=0.350 Sum_probs=156.0
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWD 85 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~ 85 (392)
||||||++++|+++|.+.|++ .|+.+++++++. +.+++.. ..+|+|||||||++++......+... +.+ .+
T Consensus 1 mi~ilD~g~~~~~~i~r~l~~-~G~~~~i~p~~~-~~~~i~~-----~~~dgiIlsGGp~s~~~~~~~~~~~~-~~~-~~ 71 (503)
T 2ywb_A 1 MVLVLDFGSQYTRLIARRLRE-LRAFSLILPGDA-PLEEVLK-----HRPQALILSGGPRSVFDPDAPRPDPR-LFS-SG 71 (503)
T ss_dssp CEEEEESSCTTHHHHHHHHHT-TTCCEEEEETTC-CHHHHHT-----TCCSEEEECCCSSCSSCTTCCCCCGG-GGC-SS
T ss_pred CEEEEECCCcHHHHHHHHHHH-CCCEEEEEECCC-CHHHHHh-----cCCCEEEECCCCchhccCCCcchHHH-HHh-CC
Confidence 499999999999999999998 799999999886 4777765 35799999999999876432222112 223 48
Q ss_pred CCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEec
Q 046651 86 VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSN 165 (392)
Q Consensus 86 iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt~ 165 (392)
+||||||+|||+|+.++||+|.+.+.+++|+....... ++||+++|.. +.|+++|++.|+. +|++++++|+++
T Consensus 72 ~PvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~-~~l~~~~~~~----~~v~~~H~~~v~~--lp~g~~v~A~s~ 144 (503)
T 2ywb_A 72 LPLLGICYGMQLLAQELGGRVERAGRAEYGKALLTRHE-GPLFRGLEGE----VQVWMSHQDAVTA--PPPGWRVVAETE 144 (503)
T ss_dssp CCEEEETHHHHHHHHTTTCEEECC---CEEEEECSEEC-SGGGTTCCSC----CEEEEECSCEEEE--CCTTCEEEEECS
T ss_pred CCEEEECHHHHHHHHHhCCeEeeCCCCccceEEEEecC-cHHhhcCCCc----cEEEEECCCcccc--CCCCCEEEEEEC
Confidence 99999999999999999999999988899987643344 8999999876 8999999999987 999999999998
Q ss_pred CCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCch
Q 046651 166 SADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCY 245 (392)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~~ 245 (392)
+ + .++|++|.++++||||||||...++.
T Consensus 145 ~--------------~--------------------------------------~i~ai~~~~~~~~gvQFHPE~~~~~~ 172 (503)
T 2ywb_A 145 E--------------N--------------------------------------PVAAIASPDGRAYGVQFHPEVAHTPK 172 (503)
T ss_dssp S--------------C--------------------------------------SCSEEECTTSSEEEESBCTTSTTSTT
T ss_pred C--------------C--------------------------------------CEEEEEeCCCCEEEEecCCCcccccc
Confidence 7 6 79999998999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 046651 246 GSKILRNFREITE 258 (392)
Q Consensus 246 G~~I~~NF~~l~~ 258 (392)
|.+||+||+++|.
T Consensus 173 g~~ll~~F~~~~~ 185 (503)
T 2ywb_A 173 GMQILENFLELAG 185 (503)
T ss_dssp HHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhh
Confidence 9999999998874
No 8
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=100.00 E-value=4e-33 Score=292.99 Aligned_cols=186 Identities=20% Similarity=0.290 Sum_probs=158.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
..||||||++++||++|.+.|++ .|+.+++++++. +++++.. ..+|+|||||||++++......+...+++.
T Consensus 7 ~~~IlilD~Gs~~~~~I~r~lre-~Gv~~eiv~~~~-~~~~i~~-----~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a 79 (556)
T 3uow_A 7 YDKILVLNFGSQYFHLIVKRLNN-IKIFSETKDYGV-ELKDIKD-----MNIKGVILSGGPYSVTEAGSPHLKKEVFEYF 79 (556)
T ss_dssp CCEEEEEESSCTTHHHHHHHHHH-TTCCEEEEETTC-CGGGTTT-----SCEEEEEECCCSCCTTSTTCCCCCHHHHHHH
T ss_pred CCEEEEEECCCccHHHHHHHHHH-CCCeEEEEECCC-CHHHHhh-----cCCCEEEECCCCCcccccCCcchhHHHHHHh
Confidence 36899999999999999999998 799999999875 4777654 579999999999999765433222333332
Q ss_pred -cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCC-------------------------------ccccc
Q 046651 83 -CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGD-------------------------------RLFHD 130 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~-------------------------------~LF~~ 130 (392)
..++||||||+|||+|+.++||+|.+.+..++|+.......+. +||++
T Consensus 80 ~~~g~PvLGIC~G~QlLa~~lGG~V~~~~~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~g 159 (556)
T 3uow_A 80 LEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFEN 159 (556)
T ss_dssp HHTTCCEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTT
T ss_pred hhcCCCEEEECHHHHHHHHHhCCcEecCCCcccCCcceeeccCcccccccceecccccccccccccccccccccchhhcc
Confidence 2489999999999999999999999998888997654333333 79999
Q ss_pred C-CCCCCcceEEEeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccc
Q 046651 131 I-PSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRH 209 (392)
Q Consensus 131 i-ps~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (392)
+ |.. +.|+++|++.|.. +|++++++|++++ +
T Consensus 160 l~~~~----~~v~~~H~d~V~~--lp~g~~vlA~s~~--------------~---------------------------- 191 (556)
T 3uow_A 160 IKSDI----TTVWMNHNDEVTK--IPENFYLVSSSEN--------------C---------------------------- 191 (556)
T ss_dssp CCSSE----EEEEEEEEEEEEE--CCTTCEEEEEETT--------------E----------------------------
T ss_pred cccCc----eEEEEEccceeec--cCCCcEEEEEeCC--------------C----------------------------
Confidence 9 776 8999999999987 9999999999987 6
Q ss_pred ccccccCCcceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHH
Q 046651 210 SIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFR 254 (392)
Q Consensus 210 ~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~ 254 (392)
.++|+++.++++||||||||+..++.|.+||+||+
T Consensus 192 ----------~i~ai~~~~~~i~GvQFHPE~~~~~~G~~ll~nFl 226 (556)
T 3uow_A 192 ----------LICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFA 226 (556)
T ss_dssp ----------EEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHH
T ss_pred ----------CEEEEEECCCCEEEEEcCCCCCccccchHHHHHHH
Confidence 89999998999999999999999999999999999
No 9
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=100.00 E-value=4.6e-33 Score=290.47 Aligned_cols=189 Identities=26% Similarity=0.329 Sum_probs=158.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+||+|||++++|+++|.+.|++ .|+.+++++++. +.+++.. ..+|+|||||||++++......+. +.+.+
T Consensus 7 ~~~IlIlD~g~~~~~~i~r~lr~-~G~~~~i~p~~~-~~~~i~~-----~~~dgiILsGGp~s~~~~~~~~~~-~~~~~- 77 (525)
T 1gpm_A 7 KHRILILDFGSQYTQLVARRVRE-LGVYCELWAWDV-TEAQIRD-----FNPSGIILSGGPESTTEENSPRAP-QYVFE- 77 (525)
T ss_dssp SSEEEEEECSCTTHHHHHHHHHH-TTCEEEEEESCC-CHHHHHH-----HCCSEEEECCCSSCTTSTTCCCCC-GGGGT-
T ss_pred CCEEEEEECCCccHHHHHHHHHH-CCCEEEEEECCC-CHHHHhc-----cCCCEEEECCcCccccccCCcchH-HHHHH-
Confidence 47899999999999999999998 799999999876 3677765 247999999999998764322221 22223
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCC----CcceEEEeeecceeecCCCCCCcE
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQ----NSGFKVVRYHSLIIDADSLPKELI 159 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~----~s~f~VvryHSl~V~~~sLP~~l~ 159 (392)
.++||||||+|||+|+.++||+|.+.+.+++|+.......+++||+++|.+. ...+.|+++|++.|+. ||++++
T Consensus 78 ~g~PvLGIC~G~Qlla~~~GG~V~~~~~~e~G~~~v~~~~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~--lp~g~~ 155 (525)
T 1gpm_A 78 AGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTA--IPSDFI 155 (525)
T ss_dssp SSSCEEEETHHHHHHHHHHTCEEECCSSCEEEEEEEEECSCCTTTTTCCSEECTTSCEEEEEEEEECSEEEE--CCTTCE
T ss_pred CCCCEEEEChHHHHHHHHcCCEEEeCCCcccceEEEEeCCCCHhhccCccccccccccceEEEEEccceeee--CCCCCE
Confidence 4899999999999999999999999998999987654456789999998710 0018899999999987 999999
Q ss_pred EEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCC
Q 046651 160 PIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPE 239 (392)
Q Consensus 160 ~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPE 239 (392)
++|++++ + .++|++|.++++||||||||
T Consensus 156 v~A~s~~--------------~--------------------------------------~i~ai~~~~~~i~gvQFHPE 183 (525)
T 1gpm_A 156 TVASTES--------------C--------------------------------------PFAIMANEEKRFYGVQFHPE 183 (525)
T ss_dssp EEEECSS--------------C--------------------------------------SCSEEEETTTTEEEESBCTT
T ss_pred EEEECCC--------------C--------------------------------------CEEEEEECCCCEEEEecCCC
Confidence 9999987 6 78999998999999999999
Q ss_pred CCCCchhHHHHHHHHH
Q 046651 240 SIATCYGSKILRNFRE 255 (392)
Q Consensus 240 siat~~G~~I~~NF~~ 255 (392)
...++.|.+||+||+.
T Consensus 184 ~~~~~~g~~ll~nF~~ 199 (525)
T 1gpm_A 184 VTHTRQGMRMLERFVR 199 (525)
T ss_dssp STTSTTHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHH
Confidence 9999999999999993
No 10
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=100.00 E-value=1.5e-33 Score=294.37 Aligned_cols=187 Identities=25% Similarity=0.342 Sum_probs=147.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+||||||++++|+++|.+.|++ .|+.+++++++.. .+++.. ..+|+|||||||++++......+. +.+.+ .
T Consensus 11 ~~I~IlD~g~~~~~~i~r~lr~-~Gv~~~i~p~~~~-~~~i~~-----~~~dgIILsGGp~sv~~~~~~~~~-~~~~~-~ 81 (527)
T 3tqi_A 11 HRILILDFGSQYAQLIARRVRE-IGVYCELMPCDID-EETIRD-----FNPHGIILSGGPETVTLSHTLRAP-AFIFE-I 81 (527)
T ss_dssp SEEEEEECSCTTHHHHHHHHHH-HTCEEEEEETTCC-SSSSTT-----TCCSEEEECCCCC---------CC-CSTTT-S
T ss_pred CeEEEEECCCccHHHHHHHHHH-CCCeEEEEECCCC-HHHHHh-----cCCCEEEECCcCcccccCCChhhH-HHHHh-c
Confidence 4899999999999999999998 6999999988753 556543 357999999999998753222111 11122 4
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCC----CcceEEEeeecceeecCCCCCCcEE
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQ----NSGFKVVRYHSLIIDADSLPKELIP 160 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~----~s~f~VvryHSl~V~~~sLP~~l~~ 160 (392)
++||||||+|||+|+.++||+|.+.+.+++|+.......+++||++++... ...+.|+++|++.|.. ||+++++
T Consensus 82 ~~PvLGIC~G~Qlla~~lGG~V~~~~~~e~G~~~v~~~~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~--lp~g~~v 159 (527)
T 3tqi_A 82 GCPVLGICYGMQTMAYQLGGKVNRTAKAEFGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSE--LPPGFEA 159 (527)
T ss_dssp SSCEEEETHHHHHHHHHSSSCBC-----CEEEEEEEESSCTTTTSSCCSBCCTTSCCEEEEEEESSSCBCS--CCTTCEE
T ss_pred CCCEEEEChHHHHHHHHcCCeEEeCCCccccceEEEEcCCChhhcCCccccccccccceEEEEEcccchhc--cCCCCEE
Confidence 999999999999999999999999998999998765566789999998720 0128899999999987 9999999
Q ss_pred EEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 161 IAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 161 iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
+|++++ + .++|+++.++++||||||||+
T Consensus 160 ~A~s~~--------------~--------------------------------------~i~ai~~~~~~~~GvQFHPE~ 187 (527)
T 3tqi_A 160 TACTDN--------------S--------------------------------------PLAAMADFKRRFFGLQFHPEV 187 (527)
T ss_dssp EEEETT--------------E--------------------------------------EEEEEECSSSCEEEESBCSSS
T ss_pred EEEeCC--------------C--------------------------------------cEEEEEcCCCCEEEEEecccc
Confidence 999977 6 899999999999999999999
Q ss_pred CCCchhHHHHHHHH
Q 046651 241 IATCYGSKILRNFR 254 (392)
Q Consensus 241 iat~~G~~I~~NF~ 254 (392)
..|++|.+||+||+
T Consensus 188 ~~t~~G~~ll~nF~ 201 (527)
T 3tqi_A 188 THTPQGHRILAHFV 201 (527)
T ss_dssp TTSTTHHHHHHHHH
T ss_pred ccccccchhhhhhh
Confidence 99999999999998
No 11
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=100.00 E-value=1.3e-33 Score=259.37 Aligned_cols=178 Identities=23% Similarity=0.314 Sum_probs=132.1
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhH---HHHHHHH
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGI---CLRVLLE 82 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi---~~~ll~~ 82 (392)
+|+|||++.+|+.++.++|++ +|++++|+++ .+++.. +|+||| ||||+|....+... ..+.+.+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~-~G~~~~v~~~----~~~l~~-------~D~lil-PG~g~~~~~~~~~~~~~~i~~~~~ 70 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIER-LGYAVTISRD----PQVVLA-------ADKLFL-PGVGTASEAMKNLTERDLIELVKR 70 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHH-TTCCEEEECC----HHHHHH-------CSEEEE-CCCSCHHHHHHHHHHTTCHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHH-CCCEEEEECC----HHHHhC-------CCEEEE-CCCCCHHHHHHHHHhcChHHHHHH
Confidence 699999999999999999998 7999998753 356644 899999 79998753211100 1122333
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCcee----------------------ceeEEEecCCcccccCCCCCCcceE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHG----------------------RLSEIVHNGDRLFHDIPSGQNSGFK 140 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG----------------------~~s~i~h~g~~LF~~ips~~~s~f~ 140 (392)
.++||||||+|||+|+.++|+.+.+.....+| +........++||++++.. +.
T Consensus 71 -~~~PvlGIClG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~ 145 (211)
T 4gud_A 71 -VEKPLLGICLGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQVKEGHPLFNGIEPD----AY 145 (211)
T ss_dssp -CCSCEEEETHHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEECTTCGGGTTCCTT----CC
T ss_pred -cCCCEEEEchhHhHHHHHhCCcccccCCccccceeccceEEEcccCCcceeeccceeeeeeccChhhcCCCCC----cE
Confidence 38999999999999999999988776554433 2333445678999999998 88
Q ss_pred EEeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcce
Q 046651 141 VVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREV 220 (392)
Q Consensus 141 VvryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 220 (392)
++++|++.+. ++...+|++++ + .
T Consensus 146 ~~~~H~~~v~-----~~~~~~a~~~~--------------g--------------------------------------~ 168 (211)
T 4gud_A 146 FYFVHSFAMP-----VGDYTIAQCEY--------------G--------------------------------------Q 168 (211)
T ss_dssp EEEEESEECC-----CCTTEEEEEES--------------S--------------------------------------S
T ss_pred EEEEeeEEeC-----CCCeEEEEecC--------------C--------------------------------------C
Confidence 9999998763 45678999987 5 3
Q ss_pred EEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHHHH
Q 046651 221 LMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREITED 259 (392)
Q Consensus 221 vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~~ 259 (392)
.+++.+.++|+||||||||+ ++++|.+||+||++++.+
T Consensus 169 ~~~~~v~~~~v~GvQFHPE~-s~~~G~~ll~nFl~~~ge 206 (211)
T 4gud_A 169 PFSAAIQAGNYYGVQFHPER-SSKAGARLIQNFLELRGE 206 (211)
T ss_dssp EEEEEEEETTEEEESSCGGG-SHHHHHHHHHHHHHC---
T ss_pred eEEEEEeCCCEEEEEccCEe-cCccHHHHHHHHHHHhcc
Confidence 44444456799999999998 589999999999999864
No 12
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.98 E-value=1.5e-31 Score=269.55 Aligned_cols=183 Identities=25% Similarity=0.391 Sum_probs=150.5
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+||++||+ +.++|+.+.|.+ .|+.++|++++. +.+++.. ..+|+||||||||+|... ....+++++.
T Consensus 190 ~~~V~viD~--G~k~ni~r~L~~-~G~~v~vvp~~~-~~e~i~~-----~~~DGliLsGGPgdp~~~---~~~~~~Ir~~ 257 (379)
T 1a9x_B 190 PFHVVAYDF--GAKRNILRMLVD-RGCRLTIVPAQT-SAEDVLK-----MNPDGIFLSNGPGDPAPC---DYAITAIQKF 257 (379)
T ss_dssp CEEEEEEES--SCCHHHHHHHHH-TTEEEEEEETTC-CHHHHHT-----TCCSEEEECCCSBCSTTC---HHHHHHHHHH
T ss_pred CCEEEEEEC--CChHHHHHHHHH-CCCEEEEEeccC-CHHHHhh-----cCCCEEEEeCCCCChHHH---HHHHHHHHHH
Confidence 479999999 677999999998 799999999986 3677754 569999999999999742 3345556552
Q ss_pred --CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 84 --WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 84 --~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
.++||||||+|||+|+.++||++.+.+.+.+|....+.+ ++.++ .+.+.++|++.|+.++||++++++
T Consensus 258 ~~~~~PILGIClG~QLLa~A~GG~v~k~~~gh~g~n~pv~~--------~~~g~--v~its~~H~~aV~~~~Lp~~~~v~ 327 (379)
T 1a9x_B 258 LETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKD--------VEKNV--VMITAQNHGFAVDEATLPANLRVT 327 (379)
T ss_dssp TTSCCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEE--------TTTTE--EEEEEEEEEEEECSTTCCTTEEEE
T ss_pred HHcCCCEEEECchHHHHHHHhCcEEEecccccccCceeeEe--------cCCCc--EEEEecCccceEecccCCCCeEEE
Confidence 379999999999999999999999998888887666542 23331 133467999999987799999999
Q ss_pred EEe-cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 162 AWS-NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 162 Awt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
|++ ++ + .+||++|.++|+||||||||+
T Consensus 328 a~s~~D--------------g--------------------------------------~ieai~~~~~pi~gVQFHPE~ 355 (379)
T 1a9x_B 328 HKSLFD--------------G--------------------------------------TLQGIHRTDKPAFSFQGNPEA 355 (379)
T ss_dssp EEETTT--------------C--------------------------------------CEEEEEESSSSEEEESSCTTC
T ss_pred EEeCCC--------------C--------------------------------------cEEEEEECCCCEEEEEeCCcC
Confidence 998 44 5 799999999999999999999
Q ss_pred CCCch-hHHHHHHHHHHHHHh
Q 046651 241 IATCY-GSKILRNFREITEDY 260 (392)
Q Consensus 241 iat~~-G~~I~~NF~~l~~~~ 260 (392)
..++. +.+||+||++++.++
T Consensus 356 ~~~p~d~~~Lf~~Fl~~~~~~ 376 (379)
T 1a9x_B 356 SPGPHDAAPLFDHFIELIEQY 376 (379)
T ss_dssp SSSCSTTTHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHh
Confidence 87764 799999999998765
No 13
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.97 E-value=7.5e-32 Score=289.82 Aligned_cols=185 Identities=25% Similarity=0.335 Sum_probs=144.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
.||+|||++++|+..|.+.|.+ .|+.+++++++.. .+++.. ..+|+|||||||++++......+. +.+.+ .
T Consensus 30 ~~I~VLDfg~q~~~liar~lre-~Gv~~~ivp~~~~-~e~i~~-----~~~dGIILsGGp~s~~~~~~~~~~-~~i~~-~ 100 (697)
T 2vxo_A 30 GAVVILDAGAQYGKVIDRRVRE-LFVQSEIFPLETP-AFAIKE-----QGFRAIIISGGPNSVYAEDAPWFD-PAIFT-I 100 (697)
T ss_dssp CCEEEEEEC--CHHHHHHHHHH-TTCCEEEEETTCC-HHHHHH-----HTCSEEEEEECC-------CCCCC-GGGTT-S
T ss_pred CEEEEEECCCchHHHHHHHHHH-CCCEEEEEECCCC-HHHHhh-----cCCCEEEECCCCCcccCccchhHH-HHHHh-C
Confidence 4799999999999999999998 7999999999874 777755 469999999999998753222111 12223 3
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+++|+.......+++||++++.. +.|+++|++.|+. +|++++++|++
T Consensus 101 g~PvLGIC~G~QlLa~~lGG~v~~~~~~e~G~~~v~~~~~~~Lf~~l~~~----~~v~~~H~~~V~~--lp~g~~vlA~s 174 (697)
T 2vxo_A 101 GKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKE----EVVLLTHGDSVDK--VADGFKVVARS 174 (697)
T ss_dssp SCCEEEEEHHHHHHHHHTTCCBCC-------CEEEEECTTSGGGTTCCSE----EEECCCSSCCBSS--CCTTCEEEEEE
T ss_pred CCCEEEECHHHHHHHHHhCCeEeecCCCccceEEEEecCCChhhhcCCcc----Ccceeecccceec--CCCCeEEEEEe
Confidence 89999999999999999999999998899998644334678999999876 8999999999986 99999999998
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ .++|++|.++++||||||||+..++
T Consensus 175 ~~-----------------------------------------------------~i~ai~~~~~~i~GvQFHPE~~~t~ 201 (697)
T 2vxo_A 175 GN-----------------------------------------------------IVAGIANESKKLYGAQFHPEVGLTE 201 (697)
T ss_dssp TT-----------------------------------------------------EEEEEEETTTTEEEESSCTTSSSST
T ss_pred CC-----------------------------------------------------ceEEEEeCCCCEEEEEecccCCCCc
Confidence 43 8999999999999999999999999
Q ss_pred hhHHHHHHHH-HHH
Q 046651 245 YGSKILRNFR-EIT 257 (392)
Q Consensus 245 ~G~~I~~NF~-~l~ 257 (392)
.|.+||+||+ ++|
T Consensus 202 ~g~~ll~nFl~~i~ 215 (697)
T 2vxo_A 202 NGKVILKNFLYDIA 215 (697)
T ss_dssp THHHHHHHHHTTTT
T ss_pred cchhhhhhhhhccc
Confidence 9999999999 554
No 14
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.96 E-value=4.2e-29 Score=235.99 Aligned_cols=187 Identities=20% Similarity=0.286 Sum_probs=145.8
Q ss_pred cEEEEEECCCC-chHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc---hhHHHHHH
Q 046651 5 VRTLLIDNYDS-YTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED---IGICLRVL 80 (392)
Q Consensus 5 ~r~LlIDnyDS-yT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d---~gi~~~ll 80 (392)
+|+|+|.++.. +..++.+.+.. .|.+++++++++. +++...+ ..+|+|||+|||++++.... +....+++
T Consensus 13 ~~~~~i~~~~~~~~~~i~~~l~~-~G~~v~v~~~~~~--~~~~~~l---~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i 86 (239)
T 1o1y_A 13 VRVLAIRHVEIEDLGMMEDIFRE-KNWSFDYLDTPKG--EKLERPL---EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLI 86 (239)
T ss_dssp CEEEEECSSTTSSCTHHHHHHHH-TTCEEEEECGGGT--CCCSSCG---GGCSEEEECCCSCCTTCTTTCTHHHHHHHHH
T ss_pred eEEEEEECCCCCCchHHHHHHHh-CCCcEEEeCCcCc--cccccch---hcCCEEEECCCCccccCCccChhHHHHHHHH
Confidence 79999999743 56678888887 7999988877542 1122112 46999999999998876432 23345666
Q ss_pred HHc--CCCCEEEEcHHHHHHHHHhCCeeeecCC-CceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCC
Q 046651 81 LEC--WDVPILGVCLGHQALGFVHGADIVHAPE-PVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKE 157 (392)
Q Consensus 81 ~~~--~~iPILGVCLGhQ~La~a~Gg~V~~ape-p~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~ 157 (392)
++. .++||||||+|||+|+.++||+|.+.+. +.+|........+++||++++.. +.+.++|++.+ . +|++
T Consensus 87 ~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G~~~v~~~~~~~l~~~~~~~----~~~~~~H~~~v-~--lp~~ 159 (239)
T 1o1y_A 87 EEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFVEKVSDNKFFREFPDR----LRVFQWHGDTF-D--LPRR 159 (239)
T ss_dssp HHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEEEEEECCCCGGGTTSCSE----EEEEEEESEEE-C--CCTT
T ss_pred HHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCCCccccEEEEECCCCchHHhCCCC----ceeEeecCCcc-c--cCCC
Confidence 552 4899999999999999999999999988 77886533334678999999876 89999999998 3 8999
Q ss_pred cEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEecc
Q 046651 158 LIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFH 237 (392)
Q Consensus 158 l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFH 237 (392)
++++|++++ + .+||+++.+ +||||||
T Consensus 160 ~~vlA~s~~--------------~--------------------------------------~iea~~~~~--i~gvQfH 185 (239)
T 1o1y_A 160 ATRVFTSEK--------------Y--------------------------------------ENQGFVYGK--AVGLQFH 185 (239)
T ss_dssp CEEEEECSS--------------C--------------------------------------SCSEEEETT--EEEESSB
T ss_pred CEEEEEcCC--------------C--------------------------------------CEEEEEECC--EEEEEeC
Confidence 999999887 5 688999864 9999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhhh
Q 046651 238 PESIATCYGSKILRNFREITEDYWKR 263 (392)
Q Consensus 238 PEsiat~~G~~I~~NF~~l~~~~~~~ 263 (392)
||+. ..+++||+++..+....
T Consensus 186 PE~~-----~~~~~~~~~~~~~~~~~ 206 (239)
T 1o1y_A 186 IEVG-----ARTMKRWIEAYKDELEK 206 (239)
T ss_dssp SSCC-----HHHHHHHHHHTHHHHHH
T ss_pred ccCC-----HHHHHHHHHHhHHHhhh
Confidence 9992 35999999887765433
No 15
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.96 E-value=7.6e-29 Score=235.98 Aligned_cols=180 Identities=15% Similarity=0.200 Sum_probs=138.6
Q ss_pred HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCC-CCCC--CC--------c---hhHHHHHHHH-
Q 046651 18 YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG-SPAC--PE--------D---IGICLRVLLE- 82 (392)
Q Consensus 18 ~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPG-sp~~--~~--------d---~gi~~~ll~~- 82 (392)
.+..+.|.+ +|..|++++.+.. .+ +..+| ..+|+|||+|||+ +|.. .+ + ....++++++
T Consensus 31 ~~~~~~l~~-aG~~pv~lp~~~~-~~-~~~~l---~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a 104 (254)
T 3fij_A 31 QRYVDAIQK-VGGFPIALPIDDP-ST-AVQAI---SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAA 104 (254)
T ss_dssp HHHHHHHHH-HTCEEEEECCCCG-GG-HHHHH---HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCEEEEEeCCCc-hH-HHHHH---hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHH
Confidence 457788877 6999999988764 22 44444 5799999999987 3321 00 1 1224455555
Q ss_pred -cCCCCEEEEcHHHHHHHHHhCCeeeecC--------------CCceeceeEEEecCCcccccCCCCCCcceEEEeeecc
Q 046651 83 -CWDVPILGVCLGHQALGFVHGADIVHAP--------------EPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~Gg~V~~ap--------------ep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
..++||||||+|||+|+.++||++.+.. .+..|+.......++.||+.++.. +.|.+||++
T Consensus 105 ~~~~~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~~~~s~l~~~~~~~----~~v~~~H~~ 180 (254)
T 3fij_A 105 LDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNK----KLVNSLHHQ 180 (254)
T ss_dssp HHTTCCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEECTTSSGGGTCCTT----EEECCBCSC
T ss_pred HHcCCCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEeCCCChHHHhcCCc----EEEEEeccc
Confidence 2599999999999999999999997642 122344333334678999998875 899999999
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.|+. ||++++++|++++ + .++|+++.
T Consensus 181 ~v~~--l~~g~~v~a~s~d--------------g--------------------------------------~ieai~~~ 206 (254)
T 3fij_A 181 FIKK--LAPSFKVTARTAD--------------G--------------------------------------MIEAVEGD 206 (254)
T ss_dssp EESS--CCSSEEEEEEETT--------------C--------------------------------------CEEEEEES
T ss_pred hhhc--cCCCcEEEEEeCC--------------C--------------------------------------cEEEEEec
Confidence 9986 9999999999988 7 89999999
Q ss_pred -CCC-EEEEeccCCCCCC--chhHHHHHHHHHHHHHhh
Q 046651 228 -TRP-HYGVQFHPESIAT--CYGSKILRNFREITEDYW 261 (392)
Q Consensus 228 -~~P-~~GVQFHPEsiat--~~G~~I~~NF~~l~~~~~ 261 (392)
+.| +||||||||+..+ ..|++||+||++++..+.
T Consensus 207 ~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~~~ 244 (254)
T 3fij_A 207 NLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTM 244 (254)
T ss_dssp SCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHHHH
Confidence 887 9999999999775 678999999999997653
No 16
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.96 E-value=6.8e-29 Score=233.51 Aligned_cols=182 Identities=22% Similarity=0.314 Sum_probs=142.9
Q ss_pred cEEEEEECCCCch-HHHHHHHHHhCCCCeEEEeCCCCC--HHHHHhhhcccCCcCEEEECCCCCCCCCC-Cc---h--hH
Q 046651 5 VRTLLIDNYDSYT-YNIYQELSTINGVPPVVVRNDEWT--WRDICRYLYEENAFDNIVISPGPGSPACP-ED---I--GI 75 (392)
Q Consensus 5 ~r~LlIDnyDSyT-~nl~q~L~~v~G~~pvVV~nd~~~--~eel~~~l~e~~~fDgIVISpGPGsp~~~-~d---~--gi 75 (392)
|||++|.+...-. .+|.+.+.+ .|.++.+++..... .+++ ..+|+|||+|||++|... .+ + ..
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~-~g~~~~~~~~~~~~~~p~~~-------~~~d~lii~GGp~~~~~~~~~~~~~~~~~ 72 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAAL-RGHDVSMTKVYRYEKLPKDI-------DDFDMLILMGGPQSPSSTKKEFPYYDAQA 72 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHH-TTCEEEEEEGGGTCCCCSCG-------GGCSEEEECCCSSCTTCCTTTCTTCCHHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHH-CCCeEEEEeeeCCCCCCCCc-------cccCEEEECCCCCCcccccccCcccchHH
Confidence 8999999876544 456676666 89999998764321 1122 469999999999998642 22 1 22
Q ss_pred HHHHHHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEec----CCcccccCCCCCCcceEEEeeeccee
Q 046651 76 CLRVLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN----GDRLFHDIPSGQNSGFKVVRYHSLII 149 (392)
Q Consensus 76 ~~~ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~----g~~LF~~ips~~~s~f~VvryHSl~V 149 (392)
..++|++ ..++||||||+|||+|+.++||+|.+.+.+.+|+.. |... .++||.++|.. |.+.++|++.
T Consensus 73 ~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~~~~G~~~-v~~~~~~~~~~l~~~~~~~----~~v~~~H~~~- 146 (236)
T 3l7n_A 73 EVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSPKKEIGNYL-ISLTEAGKMDSYLSDFSDD----LLVGHWHGDM- 146 (236)
T ss_dssp HHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEEEEEEEEEE-EEECTTGGGCGGGTTSCSE----EEEEEEEEEE-
T ss_pred HHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCCCceeeeEE-EEEccCcccChHHhcCCCC----cEEEEecCCc-
Confidence 4566665 259999999999999999999999999989999874 4443 37899999987 9999999986
Q ss_pred ecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCC
Q 046651 150 DADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTR 229 (392)
Q Consensus 150 ~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~ 229 (392)
. .+|++++++|++++ + .++|+++.+
T Consensus 147 ~--~lp~~~~vla~s~~--------------~--------------------------------------~~~a~~~~~- 171 (236)
T 3l7n_A 147 P--GLPDKAQVLAISQG--------------C--------------------------------------PRQIIKFGP- 171 (236)
T ss_dssp C--CCCTTCEEEEECSS--------------C--------------------------------------SCSEEEEET-
T ss_pred c--cCCChheEEEECCC--------------C--------------------------------------CEEEEEECC-
Confidence 2 39999999999987 6 678888764
Q ss_pred CEEEEeccCCCCCCchhHHHHHHHHHHHHHh
Q 046651 230 PHYGVQFHPESIATCYGSKILRNFREITEDY 260 (392)
Q Consensus 230 P~~GVQFHPEsiat~~G~~I~~NF~~l~~~~ 260 (392)
++||||||||+. ..++++|++...++
T Consensus 172 ~v~gvQfHPE~~-----~~~~~~~~~~~~~~ 197 (236)
T 3l7n_A 172 KQYAFQCHLEFT-----PELVAALIAQEDDL 197 (236)
T ss_dssp TEEEESSBSSCC-----HHHHHHHHHHCSCH
T ss_pred CEEEEEeCCCCC-----HHHHHHHHHhhhhh
Confidence 899999999993 68999999876543
No 17
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=8.3e-30 Score=230.06 Aligned_cols=174 Identities=18% Similarity=0.251 Sum_probs=128.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC--chhHHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE--DIGICLRVLLE 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~--d~gi~~~ll~~ 82 (392)
|||+|||++++|+.++ +.|.+ .|.++++++++ +++ ..+|+|||+|||+++.... +.++ .+.++
T Consensus 1 m~i~vl~~~g~~~~~~-~~l~~-~G~~~~~~~~~----~~~-------~~~dglil~GG~~~~~~~~~~~~~~-~~~i~- 65 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEHE-EAIKK-AGYEAKKVKRV----EDL-------EGIDALIIPGGESTAIGKLMKKYGL-LEKIK- 65 (186)
T ss_dssp CEEEEECSSSCCHHHH-HHHHH-TTSEEEEECSG----GGG-------TTCSEEEECCSCHHHHHHHHHHTTH-HHHHH-
T ss_pred CEEEEEecCcchHHHH-HHHHH-CCCEEEEECCh----HHh-------ccCCEEEECCCCchhhhhhhhccCH-HHHHH-
Confidence 8999999999999765 88887 69999888752 222 5689999999998764211 1222 24455
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEE-------EecCCcccccCCCCCCcceEEEeeecceeecCCC-
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI-------VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSL- 154 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i-------~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sL- 154 (392)
..++||||||+|||+|+.++||++.... ..++..... .|..+.+|.++ .. +.++++|++.|+. +
T Consensus 66 ~~~~PilGIC~G~Qll~~~~gg~~~~lg-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~H~~~v~~--l~ 137 (186)
T 2ywj_A 66 NSNLPILGTCAGMVLLSKGTGINQILLE-LMDITVKRNAYGRQVDSFEKEIEFKDL-GK----VYGVFIRAPVVDK--IL 137 (186)
T ss_dssp TCCCCEEEETHHHHHHSSCCSSCCCCCC-CSSEEEETTTTCSSSCCEEEEEEETTT-EE----EEEEESSCCEEEE--EC
T ss_pred hcCCcEEEECHHHHHHHHHhCCCcCccC-CCceeEEeccCCCcccceecccccccC-Cc----EEEEEEecceeee--cC
Confidence 4589999999999999999999854321 122211100 01122466666 33 8899999999986 8
Q ss_pred CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEE
Q 046651 155 PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGV 234 (392)
Q Consensus 155 P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GV 234 (392)
|++++++|++ + + .++|+++ +++|||
T Consensus 138 ~~~~~v~a~s-d--------------~--------------------------------------~~~a~~~--~~~~gv 162 (186)
T 2ywj_A 138 SDDVEVIARD-G--------------D--------------------------------------KIVGVKQ--GKYMAL 162 (186)
T ss_dssp CTTCEEEEEE-T--------------T--------------------------------------EEEEEEE--TTEEEE
T ss_pred CCCeEEEEEE-C--------------C--------------------------------------EEEEEee--CCEEEE
Confidence 9999999999 5 4 7999987 479999
Q ss_pred eccCCCCCCchhHHHHHHHHHHHH
Q 046651 235 QFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 235 QFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
|||||.. ..|.+||+||++++.
T Consensus 163 QfHPE~~--~~g~~l~~~F~~~~~ 184 (186)
T 2ywj_A 163 SFHPELS--EDGYKVYKYFVENCV 184 (186)
T ss_dssp SSCGGGS--TTHHHHHHHHHHHHT
T ss_pred ECCCCcC--CchhHHHHHHHHHHh
Confidence 9999973 359999999999874
No 18
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.96 E-value=1.1e-28 Score=235.77 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=142.3
Q ss_pred ccEEEEEECCC-CchHHHHHHHHHhCCCCeEEEeCCCCC--HHHHHhhhcccCCcCEEEECCCCCCCCCCC-chhHHHHH
Q 046651 4 FVRTLLIDNYD-SYTYNIYQELSTINGVPPVVVRNDEWT--WRDICRYLYEENAFDNIVISPGPGSPACPE-DIGICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyD-SyT~nl~q~L~~v~G~~pvVV~nd~~~--~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~gi~~~l 79 (392)
.|+||+|++.+ +....+.++|.+ .|.++++++.+..+ .+++ ..+|+|||+|||+++.... .+....++
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~-~G~~v~v~~~~~~~~~p~~~-------~~~d~lIl~GGp~~~~d~~~~~~~~~~~ 74 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAG-EHIPFQVLRMDRSDPLPAEI-------RDCSGLAMMGGPMSANDDLPWMPTLLAL 74 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHH-TTCCEEEEEGGGTCCCCSCG-------GGSSEEEECCCSSCTTSCCTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-CCCeEEEEeccCCCcCcCcc-------ccCCEEEECCCCCcccccchHHHHHHHH
Confidence 57899999875 567889999987 79999999865421 1222 4599999999999987532 23334455
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEec----CCcccccCCCCCCcceEEEeeecceeecCC
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN----GDRLFHDIPSGQNSGFKVVRYHSLIIDADS 153 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~----g~~LF~~ips~~~s~f~VvryHSl~V~~~s 153 (392)
|++ ..++||||||+|||+|+.++||+|.+.+.+++|+.. |... .++|| ++|.. +.|.+||++.| .
T Consensus 75 i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~~~e~G~~~-v~~~~~~~~~~l~-g~~~~----~~v~~~H~~~v-~-- 145 (250)
T 3m3p_A 75 IRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSPHAEIGWVR-AWPQHVPQALEWL-GTWDE----LELFEWHYQTF-S-- 145 (250)
T ss_dssp HHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEE-EEECSSHHHHHHH-SCSSC----EEEEEEEEEEE-C--
T ss_pred HHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCCCCceeeEE-EEEecCCCCcccc-cCCCc----cEEEEEcccee-e--
Confidence 554 248999999999999999999999999999999875 4433 26799 88887 99999999999 3
Q ss_pred CCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEE
Q 046651 154 LPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYG 233 (392)
Q Consensus 154 LP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~G 233 (392)
||++++++|++++ + .++|+++.+ ++||
T Consensus 146 lp~~~~vlA~s~~--------------~--------------------------------------~~~a~~~~~-~~~G 172 (250)
T 3m3p_A 146 IPPGAVHILRSEH--------------C--------------------------------------ANQAYVLDD-LHIG 172 (250)
T ss_dssp CCTTEEEEEEETT--------------E--------------------------------------EEEEEEETT-TEEE
T ss_pred cCCCCEEEEEeCC--------------C--------------------------------------CEEEEEECC-eeEE
Confidence 9999999999988 6 899999876 5999
Q ss_pred EeccCCCCCCchhHHHHHHHH
Q 046651 234 VQFHPESIATCYGSKILRNFR 254 (392)
Q Consensus 234 VQFHPEsiat~~G~~I~~NF~ 254 (392)
||||||. ....+..++++|.
T Consensus 173 vQfHPE~-~~~~~~~~l~~~~ 192 (250)
T 3m3p_A 173 FQCHIEM-QAHMVREWCSISP 192 (250)
T ss_dssp ESSCTTC-CHHHHHHHHHHCG
T ss_pred EEeCCcC-CHHHHHHHHHhhH
Confidence 9999998 4344566666554
No 19
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.96 E-value=4.3e-30 Score=247.68 Aligned_cols=196 Identities=20% Similarity=0.200 Sum_probs=138.5
Q ss_pred cEEEEE--------ECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHH-----HHhhhcccCCcCEEEECCCCCCCCCCC
Q 046651 5 VRTLLI--------DNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRD-----ICRYLYEENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 5 ~r~LlI--------DnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~ee-----l~~~l~e~~~fDgIVISpGPGsp~~~~ 71 (392)
+||.|| |||+|++++|.++... .+++++|++++..+.++ +...+ ..+|+|||+||||++...
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~-~~~~v~v~~~~~~~~~~~~~~~~~~~~---~~~dgiil~GG~~~~~~~- 83 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIA-LQVRLDILYVDSEELEGPNADEARKAL---LGCDGIFVPGGFGNRGVD- 83 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHH-HTCCEEEEEEEGGGGSSTTTHHHHHHH---HTCSEEEECCCCTTTTHH-
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHh-cCCceEEeccChhhcccccchhHHHHH---hhCCEEEecCCCCCcCch-
Confidence 566666 4667778999998877 58899999888643211 21222 469999999999885432
Q ss_pred chhHHHHHHHHc--CCCCEEEEcHHHHHHHHHhCCeeee---cC--C-------Cc-----eec----------eeEEEe
Q 046651 72 DIGICLRVLLEC--WDVPILGVCLGHQALGFVHGADIVH---AP--E-------PV-----HGR----------LSEIVH 122 (392)
Q Consensus 72 d~gi~~~ll~~~--~~iPILGVCLGhQ~La~a~Gg~V~~---ap--e-------p~-----hG~----------~s~i~h 122 (392)
+ ..++++++ .++||||||+|||+|+.++||+|.. ++ | +. |+. ...+..
T Consensus 84 --~-~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~v~~ 160 (273)
T 2w7t_A 84 --G-KCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVYI 160 (273)
T ss_dssp --H-HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEEEEEE
T ss_pred --h-HHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccceEEEE
Confidence 2 33444431 3899999999999999999999852 11 1 11 111 123343
Q ss_pred --cCCcccccCCCCCCcceEEEee--ecceeecC---CC-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhh
Q 046651 123 --NGDRLFHDIPSGQNSGFKVVRY--HSLIIDAD---SL-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKIL 194 (392)
Q Consensus 123 --~g~~LF~~ips~~~s~f~Vvry--HSl~V~~~---sL-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (392)
.++.|++.++.. +.|++| |||.|+++ .| |++++++||+.+ +
T Consensus 161 ~~~~s~l~~~~~~~----~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d--------------~------------- 209 (273)
T 2w7t_A 161 VEKSSIMAKIYSKS----NIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDP--------------T------------- 209 (273)
T ss_dssp CCTTSHHHHHTTTC----SEEEEEEEECCEECGGGHHHHHHTTCEEEEESCT--------------T-------------
T ss_pred ecCCcHHHHHhCCC----ceEEeecccccccCHHHHHhhccCCcEEEEEcCC--------------c-------------
Confidence 367787777765 667664 68888754 26 789999999876 2
Q ss_pred cccccccccCCCcccccccccCC-cceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHh
Q 046651 195 LSDISTQIKNGSYRHSIYSNRMR-REVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDY 260 (392)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~~~-~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~ 260 (392)
.+ ..++|||++.++|+| |||||||+..++. +++||+||++++.++
T Consensus 210 ---------------------~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~~~~~l~~~Fv~~~~~~ 257 (273)
T 2w7t_A 210 ---------------------FSSRCRVEAVENPSLRFFLAVQFHPEFISTPMDPAPTYLSFMAAAAKK 257 (273)
T ss_dssp ---------------------CCTTCCEEEEECTTSSSEEEESSCGGGSCBTTBCCHHHHHHHHHHHTC
T ss_pred ---------------------CCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCCchHHHHHHHHHHHHHH
Confidence 00 127999999999865 9999999988765 599999999998754
No 20
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.95 E-value=2.1e-28 Score=223.46 Aligned_cols=177 Identities=20% Similarity=0.240 Sum_probs=126.2
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCC-----CCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhH----
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTING-----VPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGI---- 75 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G-----~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi---- 75 (392)
|||+|||...++..++.+.|.+ .| ++++++++++ + ..+|+||| ||||++.. +...
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~-~G~~~~~~~~~~~~~~~----~--------~~~dglil-pG~g~~~~--~~~~l~~~ 64 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKR-ASENFEDVSIELVESPR----N--------DLYDLLFI-PGVGHFGE--GMRRLREN 64 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHH-HSTTBSSCEEEEECSCC----S--------SCCSEEEE-CCCSCSHH--HHHHHHHT
T ss_pred CEEEEEecCCchHHHHHHHHHH-cCCCCCceEEEEECCCc----c--------cCCCEEEE-CCCCcHHH--HHHHHHhh
Confidence 8999999766666777788988 47 8898888643 1 24899999 77787642 1111
Q ss_pred -HHHHHHH--cCCCCEEEEcHHHHHHHHHhC--CeeeecCCCceeceeEE-----EecC-CcccccCC-CCCCcceEEEe
Q 046651 76 -CLRVLLE--CWDVPILGVCLGHQALGFVHG--ADIVHAPEPVHGRLSEI-----VHNG-DRLFHDIP-SGQNSGFKVVR 143 (392)
Q Consensus 76 -~~~ll~~--~~~iPILGVCLGhQ~La~a~G--g~V~~apep~hG~~s~i-----~h~g-~~LF~~ip-s~~~s~f~Vvr 143 (392)
..++|++ ..++||||||+|||+|+.++| +. .......+|..... .|.+ +.++...+ .. +.+++
T Consensus 65 ~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g~~G~-~~~l~~~~g~v~~~~~~~~~~~g~~~l~~~~~~~~----~~v~~ 139 (201)
T 1gpw_B 65 DLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPG-VKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPN----GYYYF 139 (201)
T ss_dssp TCHHHHHHHHHTTCEEEEETHHHHTTSSEETTEEE-EECCCSSSEEEEECCCSSCSEEEEEEEEESSSSCC----EEEEE
T ss_pred CHHHHHHHHHHcCCeEEEEChhHHHHHHhhccCCC-CCCcceeeeEEEEcCCCCCCcccceeeEeccCCCC----CeEEE
Confidence 2345554 248999999999999999996 33 22222223332221 1222 35555555 33 89999
Q ss_pred eecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEE
Q 046651 144 YHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMG 223 (392)
Q Consensus 144 yHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmg 223 (392)
||++.|++ + +++++|++++. + ..++|
T Consensus 140 ~H~~~v~~--~--~~~vla~s~~~-------------g-------------------------------------~~~~a 165 (201)
T 1gpw_B 140 VHTYRAVC--E--EEHVLGTTEYD-------------G-------------------------------------EIFPS 165 (201)
T ss_dssp EESEEEEE--C--GGGEEEEEEET-------------T-------------------------------------EEEEE
T ss_pred ECcceecc--C--CCEEEEEEccC-------------C-------------------------------------ceEEE
Confidence 99999986 4 68899998640 1 16899
Q ss_pred EEecCCCEEEEeccCCCCCCchhHHHHHHHHHHHH
Q 046651 224 IMHSTRPHYGVQFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 224 i~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
+++.+ ++||||||||+. ++.|++||+||++++.
T Consensus 166 ~~~~~-~i~gvQfHPE~~-~~~~~~l~~~f~~~~~ 198 (201)
T 1gpw_B 166 AVRKG-RILGFQFHPEKS-SKIGRKLLEKVIECSL 198 (201)
T ss_dssp EEEET-TEEEESSCGGGS-HHHHHHHHHHHHHHSS
T ss_pred EEECC-CEEEEECCCccc-CHhHHHHHHHHHHHhh
Confidence 99876 899999999996 7889999999999864
No 21
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.94 E-value=6.2e-27 Score=214.28 Aligned_cols=188 Identities=15% Similarity=0.233 Sum_probs=138.8
Q ss_pred cEEEEEECCCCch-HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-----chhHHHH
Q 046651 5 VRTLLIDNYDSYT-YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-----DIGICLR 78 (392)
Q Consensus 5 ~r~LlIDnyDSyT-~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-----d~gi~~~ 78 (392)
|||+||++++.++ +++++.|.+ .|.++++++.++ ++ ..+|+|||+||++.+.... ......+
T Consensus 3 ~~i~il~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~----~~-------~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~ 70 (213)
T 3d54_D 3 PRACVVVYPGSNCDRDAYHALEI-NGFEPSYVGLDD----KL-------DDYELIILPGGFSYGDYLRPGAVAAREKIAF 70 (213)
T ss_dssp CEEEEECCTTEEEHHHHHHHHHT-TTCEEEEECTTC----CC-------SSCSEEEECEECGGGGCSSTTHHHHTSTTHH
T ss_pred cEEEEEEcCCCCccHHHHHHHHH-CCCEEEEEecCC----Cc-------ccCCEEEECCCCchhhhhccccccccHHHHH
Confidence 6899999998886 899999988 699999987653 11 5699999987765443310 0111234
Q ss_pred HHHH--cCCCCEEEEcHHHHHHHHH--hCCeeeecCCC-ceeceeEEEe--cCCcccccCCCCCCcceEEEeee---cce
Q 046651 79 VLLE--CWDVPILGVCLGHQALGFV--HGADIVHAPEP-VHGRLSEIVH--NGDRLFHDIPSGQNSGFKVVRYH---SLI 148 (392)
Q Consensus 79 ll~~--~~~iPILGVCLGhQ~La~a--~Gg~V~~apep-~hG~~s~i~h--~g~~LF~~ips~~~s~f~VvryH---Sl~ 148 (392)
+|++ ..++||||||+|+|+|+.+ ++++|.+.+.. .|.....|.. .+++||++++.+. .+.+.++| ++.
T Consensus 71 ~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~~~~~~l~~~~~~~~--~~~~~~~H~~~s~~ 148 (213)
T 3d54_D 71 EIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVENNDTPFTNAFEKGE--KIRIPIAHGFGRYV 148 (213)
T ss_dssp HHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEECCCSSTTSTTSCTTC--EEEEECCBSSCEEE
T ss_pred HHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeCCCCCceeeccCCCC--EEEEEeecCceEEE
Confidence 4443 2389999999999999999 99999987643 2443445554 4789999998641 16677799 776
Q ss_pred eecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecC
Q 046651 149 IDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHST 228 (392)
Q Consensus 149 V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~ 228 (392)
+. |++++++|++++++ + ....++|+.+.+
T Consensus 149 ~~----~~~~~~~a~~~~~n------------g-----------------------------------~~~~i~a~~~~~ 177 (213)
T 3d54_D 149 KI----DDVNVVLRYVKDVN------------G-----------------------------------SDERIAGVLNES 177 (213)
T ss_dssp CS----SCCEEEEEESSCSS------------C-----------------------------------CGGGEEEEECSS
T ss_pred ec----CCCcEEEEEcCCCC------------C-----------------------------------CccceeEEEcCC
Confidence 63 36789999986511 1 002799999888
Q ss_pred CCEEEEeccCCCCC-----CchhHHHHHHHHHHH
Q 046651 229 RPHYGVQFHPESIA-----TCYGSKILRNFREIT 257 (392)
Q Consensus 229 ~P~~GVQFHPEsia-----t~~G~~I~~NF~~l~ 257 (392)
.++||||||||+.. ++.|++||+||++++
T Consensus 178 ~~~~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~~ 211 (213)
T 3d54_D 178 GNVFGLMPHPERAVEELIGGEDGKKVFQSILNYL 211 (213)
T ss_dssp SCEEEECSCSTTTTSTTTTCSTTSHHHHHHHHHC
T ss_pred CCEEEEeCCHHHhcCHhhhcCccHHHHHHHHHHh
Confidence 89999999999977 578999999999875
No 22
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.94 E-value=4.3e-28 Score=238.21 Aligned_cols=201 Identities=17% Similarity=0.205 Sum_probs=142.5
Q ss_pred cEEEEEECCCC--------chH---HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCch
Q 046651 5 VRTLLIDNYDS--------YTY---NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDI 73 (392)
Q Consensus 5 ~r~LlIDnyDS--------yT~---nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~ 73 (392)
++|.|..+... ++| ++.++|.+ .|..+++++++. +.+++..++ ..+|+|||+|||+++... .+
T Consensus 31 P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~~~vv~~~~-~~~~i~~~l---~~~dglil~GG~~~v~p~-~~ 104 (315)
T 1l9x_A 31 PIIGILMQKCRNKVMKNYGRYYIAASYVKYLES-AGARVVPVRLDL-TEKDYEILF---KSINGILFPGGSVDLRRS-DY 104 (315)
T ss_dssp CEEEEECEECCSHHHHTTCSEEEEHHHHHHHHH-TTCEEEEECSSC-CHHHHHHHH---HHSSEEEECCCCCCTTTC-HH
T ss_pred CEEEEECCcccccccccCcceehHHHHHHHHHH-CCCEEEEEecCC-CHHHHHHHH---hcCCEEEEeCCCcccChh-hh
Confidence 46777754321 232 46788888 699999999876 366765544 569999999999987532 22
Q ss_pred ----hHHHHHHHHc---C-CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEe----cCCcccccCCCCCC----c
Q 046651 74 ----GICLRVLLEC---W-DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVH----NGDRLFHDIPSGQN----S 137 (392)
Q Consensus 74 ----gi~~~ll~~~---~-~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h----~g~~LF~~ips~~~----s 137 (392)
..+.+.+++. + ++||||||+|||+|+.++||.+.....+.+|....+.. .++.||+++|+... .
T Consensus 105 ~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~~~~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~ 184 (315)
T 1l9x_A 105 AKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAV 184 (315)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEEEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCccccccccccCCCCCeeeccCCCCChHHHhcChhhhhhccc
Confidence 1223333332 2 59999999999999999999976655556675434433 47889999875300 0
Q ss_pred ceEEEeeecceeecC------CCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccccc
Q 046651 138 GFKVVRYHSLIIDAD------SLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSI 211 (392)
Q Consensus 138 ~f~VvryHSl~V~~~------sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 211 (392)
...++++|++.|+++ .||++++++|++.+ +.
T Consensus 185 ~~~~~~~H~~~V~~~~~~~~~~l~~g~~v~A~s~d--------------g~----------------------------- 221 (315)
T 1l9x_A 185 EPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTD--------------GK----------------------------- 221 (315)
T ss_dssp SCCEEEEEEEECBHHHHHTCHHHHHHEEEEEEEES--------------SS-----------------------------
T ss_pred cceEEEhhhhhcCccccccccccCCCCEEEEEcCC--------------CC-----------------------------
Confidence 012457999999842 28889999999987 40
Q ss_pred ccccCCcceEEEEEecCCCEEEEeccCCCCCCc---------------hhHHHHHHHHHHHHHh
Q 046651 212 YSNRMRREVLMGIMHSTRPHYGVQFHPESIATC---------------YGSKILRNFREITEDY 260 (392)
Q Consensus 212 ~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~---------------~G~~I~~NF~~l~~~~ 260 (392)
...+|+++|.+.|+||||||||+..++ .|++||++|++++++.
T Consensus 222 ------ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~~ 279 (315)
T 1l9x_A 222 ------IEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKN 279 (315)
T ss_dssp ------CEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred ------EEEEEEeccCCCCEEEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 115778899888999999999986522 4789999999998643
No 23
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.93 E-value=3e-27 Score=247.81 Aligned_cols=199 Identities=19% Similarity=0.200 Sum_probs=133.1
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCH--HHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTW--RDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~--eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
++++|||+|++++|.++... +|+++++++++...+ +++...| ..+|+|||+||||+|... + ..+++++
T Consensus 310 v~l~D~y~Sv~~aL~~~g~~-~g~~v~I~~~d~~~~~~~~~~~~L---~~~DGIILpGGfGd~~~~---g-~i~~ir~a~ 381 (550)
T 1vco_A 310 VKMPDAYLSLLEALRHAGIK-NRARVEVKWVDAESLEAADLEEAF---RDVSGILVPGGFGVRGIE---G-KVRAAQYAR 381 (550)
T ss_dssp C---CTTHHHHHHHHHHHHH-TTEEEEEEEEEGGGC--CCHHHHT---TTCSCEEECCCCSSTTHH---H-HHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHHH-cCCeEEEEEeCccccccchHHHHH---hcCCEEEECCCCCCcchh---h-hHHHHHHHH
Confidence 67899999999999999887 799999887766322 1232223 579999999999998532 2 2234433
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCC---------CceeceeEE------EecC--------------CcccccCCC
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPE---------PVHGRLSEI------VHNG--------------DRLFHDIPS 133 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~ape---------p~hG~~s~i------~h~g--------------~~LF~~ips 133 (392)
..++|+||||||||+|+.++|+.+..++. ..|+....+ .|.+ ..++..+..
T Consensus 382 e~~iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~~s~l~~iy~ 461 (550)
T 1vco_A 382 ERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYG 461 (550)
T ss_dssp HTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTTSHHHHHHC
T ss_pred HCCCcEEEECcCHHHHHHHhCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEccCchhhHhcC
Confidence 24899999999999999999998876542 234433211 1111 122222211
Q ss_pred CCCcceEEEeeecceeecC---CCC-CCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccc
Q 046651 134 GQNSGFKVVRYHSLIIDAD---SLP-KELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRH 209 (392)
Q Consensus 134 ~~~s~f~VvryHSl~V~~~---sLP-~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (392)
.. .+.....|.+.|++. .++ ++++++||+.+ +.+
T Consensus 462 ~~--~v~e~h~H~Y~Vns~~~~~l~~~gl~v~a~s~d--------------G~g-------------------------- 499 (550)
T 1vco_A 462 KE--EVLERHRHRYEVNPLYVDGLERAGLVVSATTPG--------------MRG-------------------------- 499 (550)
T ss_dssp CS--EEEEEEEESEEECHHHHHHHHHHTEEEEEECCC--------------BTT--------------------------
T ss_pred Cc--eeeeeccceEEEchHHhhccccCCeEEEEEeCC--------------CCc--------------------------
Confidence 10 011235677777542 255 68999999876 200
Q ss_pred ccccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHhh
Q 046651 210 SIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDYW 261 (392)
Q Consensus 210 ~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~~ 261 (392)
..+..+|||+|.++|+| |||||||+.+++. |++||+||++++.++.
T Consensus 500 ------~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~ 547 (550)
T 1vco_A 500 ------RGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALAYQ 547 (550)
T ss_dssp ------BSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHHHHHHHHT
T ss_pred ------cCCCcEEEEEeCCCCEEEEEEeCCccCCCCCChHHHHHHHHHHHHhhc
Confidence 00128999999999998 9999999988876 9999999999988753
No 24
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.93 E-value=5.5e-26 Score=207.74 Aligned_cols=174 Identities=20% Similarity=0.227 Sum_probs=126.2
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC----CCchhHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC----PEDIGICLRVL 80 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~----~~d~gi~~~ll 80 (392)
|||+|||...++...+.+.|++ .|.+++++++++ ++ ..+|+||| ||||++.. ..+ ....++|
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~-~G~~~~~~~~~~----~l-------~~~d~lil-~G~g~~~~~~~~l~~-~~~~~~i 68 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEA-AGFSVAVAQDPK----AH-------EEADLLVL-PGQGHFGQVMRAFQE-SGFVERV 68 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHH-TTCEEEEESSTT----SC-------SSCSEEEE-CCCSCHHHHHHTTSS-SCTHHHH
T ss_pred cEEEEEeCCCccHHHHHHHHHH-CCCeEEEecChH----Hc-------ccCCEEEE-CCCCcHHHHHHHHHh-cCHHHHH
Confidence 6899999876777888899988 799999987543 22 46999999 88887642 111 1134445
Q ss_pred HH--cCCCCEEEEcHHHHHHHHH---hC---------CeeeecC---CCceeceeEEEecCCcccccCCCCCCcceEEEe
Q 046651 81 LE--CWDVPILGVCLGHQALGFV---HG---------ADIVHAP---EPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVR 143 (392)
Q Consensus 81 ~~--~~~iPILGVCLGhQ~La~a---~G---------g~V~~ap---ep~hG~~s~i~h~g~~LF~~ips~~~s~f~Vvr 143 (392)
++ ..++||||||+|||+|+.+ +| ++|.+.+ .+..|+... .... . |.+++. +.+++
T Consensus 69 ~~~~~~~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~~~v-~~~~-~-l~~~~~-----~~~~~ 140 (200)
T 1ka9_H 69 RRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNAL-EFGG-A-FAPLTG-----RHFYF 140 (200)
T ss_dssp HHHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEEEEC-EECG-G-GGGGTT-----CEEEE
T ss_pred HHHHHcCCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCceeEEEE-Eech-h-hhcCCC-----CCEEE
Confidence 43 2489999999999999999 68 8888875 456776543 3223 4 777764 57899
Q ss_pred eecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEE
Q 046651 144 YHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMG 223 (392)
Q Consensus 144 yHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmg 223 (392)
+||+.+ + +++. .+ |++++. + ..+++
T Consensus 141 ~Hs~~~-~--~~~~-~v-a~s~~~-------------g-------------------------------------~~~~~ 165 (200)
T 1ka9_H 141 ANSYYG-P--LTPY-SL-GKGEYE-------------G-------------------------------------TPFTA 165 (200)
T ss_dssp EESEEC-C--CCTT-CC-EEEEET-------------T-------------------------------------EEEEE
T ss_pred eccccc-C--CCCC-cE-EEEEeC-------------C-------------------------------------eEEEE
Confidence 999999 5 4443 44 777540 1 15788
Q ss_pred EEecCCCEEEEeccCCCCCCchhHHHH---HHHHHHH
Q 046651 224 IMHSTRPHYGVQFHPESIATCYGSKIL---RNFREIT 257 (392)
Q Consensus 224 i~h~~~P~~GVQFHPEsiat~~G~~I~---~NF~~l~ 257 (392)
+.+.+ ++||||||||+.. +.|++|| +||++++
T Consensus 166 ~~~~~-~i~gvQfHPE~~~-~~g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 166 LLAKE-NLLAPQFHPEKSG-KAGLAFLALARRYFEVL 200 (200)
T ss_dssp EEECS-SEEEESSCTTSSH-HHHHHHHHHHHHHC---
T ss_pred EEeeC-CEEEEecCCCcCc-cchhHHHHHHHHHHhhC
Confidence 88766 9999999999965 8899999 9998764
No 25
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.93 E-value=1.7e-25 Score=203.39 Aligned_cols=181 Identities=15% Similarity=0.197 Sum_probs=124.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-CchhHHHHHHHH-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-EDIGICLRVLLE- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~d~gi~~~ll~~- 82 (392)
|||+|||++++|+.++ +.|++ .|+++++++.. +++ ..+|+|||+||++++... .+..-..+++++
T Consensus 2 m~I~il~~~~~~~~~~-~~l~~-~g~~~~~~~~~----~~l-------~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~ 68 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHI-HAIEA-CGAAGLVVKRP----EQL-------NEVDGLILPGGESTTMRRLIDTYQFMEPLREF 68 (196)
T ss_dssp CEEEEECSSSCCHHHH-HHHHH-TTCEEEEECSG----GGG-------GGCSEEEECCSCHHHHHHHHHHTTCHHHHHHH
T ss_pred cEEEEEEccCCcHHHH-HHHHH-CCCEEEEeCCh----HHH-------hhCCEEEECCCChhhHHHHhhhHHHHHHHHHH
Confidence 8999999999999887 88887 69999888642 233 359999999998665321 000111344444
Q ss_pred -cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEE-------ecCCcccccCCCCCCcceEEEeeecceeecCCC
Q 046651 83 -CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIV-------HNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSL 154 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~-------h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sL 154 (392)
..++||||||+|||+|+.++|+.+...-....+...... +....++.+++.. |.+.++|++.|.. +
T Consensus 69 ~~~~~pilgIC~G~q~l~~~~gg~~~~~lg~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~----~~~~~~h~~~v~~--~ 142 (196)
T 2nv0_A 69 AAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEP----FTGVFIRAPHILE--A 142 (196)
T ss_dssp HHTTCCEEEETHHHHHHSBCCC----CCCCCSCEEEECCCSCTTTSEEEEEECCTTCSSC----EEEEEESCCEEEE--E
T ss_pred HHCCCcEEEECHHHHHHHHHhcCCCCCcccCCceeEeccCCCcccccccCCcccccCCCc----eEEEEEecceecc--c
Confidence 248999999999999999999975321111111110000 0112355666544 8999999999986 8
Q ss_pred CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEE
Q 046651 155 PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGV 234 (392)
Q Consensus 155 P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GV 234 (392)
|++++++|++ + + .++|+++ .++||+
T Consensus 143 ~~~~~v~a~~-d--------------~--------------------------------------~~~a~~~--~~~~gv 167 (196)
T 2nv0_A 143 GENVEVLSEH-N--------------G--------------------------------------RIVAAKQ--GQFLGC 167 (196)
T ss_dssp CTTCEEEEEE-T--------------T--------------------------------------EEEEEEE--TTEEEE
T ss_pred CCCcEEEEEE-C--------------C--------------------------------------EEEEEEE--CCEEEE
Confidence 8999999998 4 3 6799986 489999
Q ss_pred eccCCCCCCchhHHHHHHHHHHHHHhhh
Q 046651 235 QFHPESIATCYGSKILRNFREITEDYWK 262 (392)
Q Consensus 235 QFHPEsiat~~G~~I~~NF~~l~~~~~~ 262 (392)
|||||.... .+|++||++.++...+
T Consensus 168 QfHPE~~~~---~~l~~~fl~~~~~~~~ 192 (196)
T 2nv0_A 168 SFHPELTED---HRVTQLFVEMVEEYKQ 192 (196)
T ss_dssp SSCTTSSSC---CHHHHHHHHHHHHHHH
T ss_pred EECCccCCc---hHHHHHHHHHHHhhhh
Confidence 999998443 4899999998876443
No 26
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.93 E-value=3.8e-26 Score=221.92 Aligned_cols=193 Identities=17% Similarity=0.142 Sum_probs=131.2
Q ss_pred ccEEEEE-EC-CCCc-hHHHHHHHHHhCCC----CeEEEeCCCCCH---------HH---HHhhhcccCCcCEEEECCCC
Q 046651 4 FVRTLLI-DN-YDSY-TYNIYQELSTINGV----PPVVVRNDEWTW---------RD---ICRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 4 ~~r~LlI-Dn-yDSy-T~nl~q~L~~v~G~----~pvVV~nd~~~~---------ee---l~~~l~e~~~fDgIVISpGP 64 (392)
.|||+|| |. ..++ ..++++.|.+. |+ .++++..+..+. ++ +...+ ..+|+|||+|||
T Consensus 25 ~~~Iavv~d~~~~~~s~~si~~~L~~~-G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~dgiil~GG~ 100 (289)
T 2v4u_A 25 ICSIALVGKYTKLRDCYASVFKALEHS-ALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKL---CKADGILVPGGF 100 (289)
T ss_dssp EEEEEEEESCSSCCGGGHHHHHHHHHH-HHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHH---HHCSEEEECSCC
T ss_pred ceEEEEEecCcCCCccHHHHHHHHHHh-hhhhCCceEEEEechhhcccccccCChhhhhhHHHHH---hhCCEEEecCCC
Confidence 4799999 65 4444 33778888763 44 344444432111 11 11112 459999999999
Q ss_pred CCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHHhCCeee---ecCC---------C------ceec--------
Q 046651 65 GSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFVHGADIV---HAPE---------P------VHGR-------- 116 (392)
Q Consensus 65 Gsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~---~ape---------p------~hG~-------- 116 (392)
|++.. .-+.+++++ ..++||||||+|||+|+.++||+|. .++. + .|+.
T Consensus 101 ~~~~~----~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~~~~~~~~ 176 (289)
T 2v4u_A 101 GIRGT----LGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGNLGGTMR 176 (289)
T ss_dssp SSTTH----HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTTCSSCBCE
T ss_pred CchhH----HHHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcccccCCccc
Confidence 88432 224455554 2489999999999999999999985 2210 0 1221
Q ss_pred --eeEEEe--cCCcccccCCCCCCcceEEEee--ecceeecC---CCC-CCcEEEEEecCCCCccccccCCCCCCCcccc
Q 046651 117 --LSEIVH--NGDRLFHDIPSGQNSGFKVVRY--HSLIIDAD---SLP-KELIPIAWSNSADGFSYLGTLQSGEIPDAYQ 186 (392)
Q Consensus 117 --~s~i~h--~g~~LF~~ips~~~s~f~Vvry--HSl~V~~~---sLP-~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~ 186 (392)
...+.. .++.|++.++.. +.|..+ |++.|+++ .|| ++++++|++.+ +
T Consensus 177 ~g~~~v~~~~~~s~l~~~~~~~----~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~d--------------g----- 233 (289)
T 2v4u_A 177 LGIRRTVFKTENSILRKLYGDV----PFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVD--------------G----- 233 (289)
T ss_dssp EEEEEEEESCSCCHHHHHTTSC----SEEEEEEEECEEECGGGSGGGTTSSEEEEEEETT--------------S-----
T ss_pred cceEEEEEecCCCHHHHhcCCC----ceEEEecccccccCHHHHHhcccCCeEEEEEcCC--------------C-----
Confidence 133444 467787777664 566544 46666553 378 89999999987 6
Q ss_pred cchhhhhhcccccccccCCCcccccccccCCcce-EEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHh
Q 046651 187 SQSRQKILLSDISTQIKNGSYRHSIYSNRMRREV-LMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDY 260 (392)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~ 260 (392)
. +|||++.++|+| |||||||+..++. +++||++|++.+...
T Consensus 234 ---------------------------------~~ieaie~~~~p~~lGvQfHPE~~~~~~~~~~lf~~Fv~~~~~~ 277 (289)
T 2v4u_A 234 ---------------------------------DRMEIIELANHPYFVGVQFHPEFSSRPMKPSPPYLGLLLAATGN 277 (289)
T ss_dssp ---------------------------------CSEEEEEESSSSCEEEESSBGGGGCBTTBCCHHHHHHHHHHHTC
T ss_pred ---------------------------------CeEEEEEcCCCCeEEEEECCCCCCCCCCchHHHHHHHHHHHHhh
Confidence 5 999999999976 9999999987665 699999999988643
No 27
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.92 E-value=2.2e-25 Score=207.14 Aligned_cols=181 Identities=14% Similarity=0.171 Sum_probs=127.0
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-CchhHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-EDIGICLRVLL 81 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~d~gi~~~ll~ 81 (392)
..|||+|||++++|+.+ ++.|++ .|+++++++.. +++ ..+|+|||+||++++... .......++|+
T Consensus 22 ~~~~I~il~~~~~~~~~-~~~l~~-~G~~~~~~~~~----~~l-------~~~Dglil~GG~~~~~~~~~~~~~~~~~i~ 88 (219)
T 1q7r_A 22 SNMKIGVLGLQGAVREH-VRAIEA-CGAEAVIVKKS----EQL-------EGLDGLVLPGGESTTMRRLIDRYGLMEPLK 88 (219)
T ss_dssp CCCEEEEESCGGGCHHH-HHHHHH-TTCEEEEECSG----GGG-------TTCSEEEECCCCHHHHHHHHHHTTCHHHHH
T ss_pred CCCEEEEEeCCCCcHHH-HHHHHH-CCCEEEEECCH----HHH-------hhCCEEEECCCChHHHHHHhhhhHHHHHHH
Confidence 45899999998889865 478877 79999888752 232 469999999998754320 00011134444
Q ss_pred H--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCce--------eceeEEEecCCcccccCCCCCCcceEEEeeecceeec
Q 046651 82 E--CWDVPILGVCLGHQALGFVHGADIVHAPEPVH--------GRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDA 151 (392)
Q Consensus 82 ~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~h--------G~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~ 151 (392)
+ ..++||||||+|||+|+.++|+.+...-.... |+.. ..+.....|.+++.. |.+.++|++.|+.
T Consensus 89 ~~~~~~~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~~~~~~~g~~~-~~~~~~~~~~g~g~~----~~~~~~h~~~v~~ 163 (219)
T 1q7r_A 89 QFAAAGKPMFGTCAGLILLAKRIVGYDEPHLGLMDITVERNSFGRQR-ESFEAELSIKGVGDG----FVGVFIRAPHIVE 163 (219)
T ss_dssp HHHHTTCCEEEETTHHHHHEEEEESSCCCCCCCEEEEEECHHHHCCC-CCEEEEEEETTTEEE----EEEEESSCCEEEE
T ss_pred HHHHcCCeEEEECHHHHHHHHHhCCCCcCCcCccceEEEecCCCccc-cceecCcccCCCCCc----eEEEEEecceeec
Confidence 4 24899999999999999999997632111111 1110 001111234555433 8889999999987
Q ss_pred CCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCE
Q 046651 152 DSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPH 231 (392)
Q Consensus 152 ~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~ 231 (392)
+|++++++|++ + + .++|+++ .++
T Consensus 164 --l~~~~~v~a~s-d--------------g--------------------------------------~~ea~~~--~~i 186 (219)
T 1q7r_A 164 --AGDGVDVLATY-N--------------D--------------------------------------RIVAARQ--GQF 186 (219)
T ss_dssp --ECTTCEEEEEE-T--------------T--------------------------------------EEEEEEE--TTE
T ss_pred --cCCCcEEEEEc-C--------------C--------------------------------------EEEEEEE--CCE
Confidence 89999999998 5 4 7899987 489
Q ss_pred EEEeccCCCCCCchhHHHHHHHHHHHHHhh
Q 046651 232 YGVQFHPESIATCYGSKILRNFREITEDYW 261 (392)
Q Consensus 232 ~GVQFHPEsiat~~G~~I~~NF~~l~~~~~ 261 (392)
||+|||||.... .+||+||++.+..+.
T Consensus 187 ~GvQfHPE~~~~---~~l~~~fl~~~~~~~ 213 (219)
T 1q7r_A 187 LGCSFHPELTDD---HRLMQYFLNMVKEAK 213 (219)
T ss_dssp EEESSCGGGSSC---CHHHHHHHHHHHHHH
T ss_pred EEEEECcccCCC---HHHHHHHHHHHHHhh
Confidence 999999999532 589999999987653
No 28
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.92 E-value=4.5e-26 Score=238.65 Aligned_cols=194 Identities=19% Similarity=0.209 Sum_probs=133.1
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHH-HHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--c
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWR-DICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE--C 83 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~e-el~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~ 83 (392)
++++|+|+|++++|.+.... +|+++++++++..+++ ++...+ ..+|+||||||||+|... + ..+++++ .
T Consensus 299 v~l~D~y~Si~~aL~~~G~~-~~~~V~i~~~d~e~i~~~~~~~l---~~~DGIilsGGpg~~~~~---g-~~~~i~~a~~ 370 (545)
T 1s1m_A 299 IELPDAYKSVIEALKHGGLK-NRVSVNIKLIDSQDVETRGVEIL---KGLDAILVPGGFGYRGVE---G-MITTARFARE 370 (545)
T ss_dssp CSSGGGGHHHHHHHHHHHHH-HTEEEEEEEEEHHHHHHHCTTTT---TTCSEEEECCCCSSTTHH---H-HHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHHHhCcc-cCCeEEEccCCHHHhhhhhhhhh---hcCCEEEECCCCCCccch---h-hHHHHHHHHH
Confidence 56789999999999888776 4778888877642221 111222 579999999999998532 2 2233433 2
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCC---------ceeceeE------------------------------EEecC
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEP---------VHGRLSE------------------------------IVHNG 124 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep---------~hG~~s~------------------------------i~h~g 124 (392)
.++|+||||+|||+|+.++|+++..++.. .|+.... +....
T Consensus 371 ~~~PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~ 450 (545)
T 1s1m_A 371 NNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVD 450 (545)
T ss_dssp TTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECT
T ss_pred CCCcEEEECChHHHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCccccccceeeEecc
Confidence 48999999999999999999999865422 1221110 01111
Q ss_pred CcccccCCCCCCcceEE--EeeecceeecCC---C-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccc
Q 046651 125 DRLFHDIPSGQNSGFKV--VRYHSLIIDADS---L-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDI 198 (392)
Q Consensus 125 ~~LF~~ips~~~s~f~V--vryHSl~V~~~s---L-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (392)
..++..+... ..+ ...|.+.|++.. | +++++++|++.+ +
T Consensus 451 ~s~l~~iyg~----~~v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~d--------------g----------------- 495 (545)
T 1s1m_A 451 DSLVRQLYNA----PTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGD--------------D----------------- 495 (545)
T ss_dssp TCHHHHHTTS----SEEEEEEEECCEECHHHHHHHHHTTCEEEEECSS--------------S-----------------
T ss_pred CCHHHHhcCC----ceEEEecCcceEEChHHhhhcccCCeEEEEECCC--------------C-----------------
Confidence 1222222222 233 356777776532 4 379999999877 3
Q ss_pred cccccCCCcccccccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHhhhh
Q 046651 199 STQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDYWKR 263 (392)
Q Consensus 199 ~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~~~~ 263 (392)
..+||++|.++|+| |||||||+.+++. |+.||+||++++.++.++
T Consensus 496 --------------------~~VEaie~~~~p~flGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~~~ 542 (545)
T 1s1m_A 496 --------------------QLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKR 542 (545)
T ss_dssp --------------------CCEEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred --------------------CceEEEEeCCCCEEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Confidence 17999999999988 9999999998887 899999999999876543
No 29
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.90 E-value=2.6e-24 Score=193.97 Aligned_cols=173 Identities=14% Similarity=0.126 Sum_probs=117.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCch---hHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDI---GICLRVL 80 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~---gi~~~ll 80 (392)
+|+|.|+...+.+ .++.+.|.+ .|++++++++++ ++ ..+|+|||+||++. .+.+. ..+.+++
T Consensus 2 ~p~Igi~~~~~~~-~~~~~~l~~-~G~~~~~~~~~~----~l-------~~~dglil~GG~~~--~~~~~~~~~~~~~~i 66 (191)
T 2ywd_A 2 RGVVGVLALQGDF-REHKEALKR-LGIEAKEVRKKE----HL-------EGLKALIVPGGEST--TIGKLAREYGIEDEV 66 (191)
T ss_dssp -CCEEEECSSSCH-HHHHHHHHT-TTCCCEEECSGG----GG-------TTCSEEEECSSCHH--HHHHHHHHTTHHHHH
T ss_pred CcEEEEEecCCch-HHHHHHHHH-CCCEEEEeCChh----hh-------ccCCEEEECCCChh--hhHHhhhhhhHHHHH
Confidence 3678898775444 467888887 799999987543 22 45999999998532 11111 1124455
Q ss_pred HH--cCC-CCEEEEcHHHHHHHHHhCC-eeeecCCCc--------eeceeEEEecCCcccccCCCCCCcceEEEeeecce
Q 046651 81 LE--CWD-VPILGVCLGHQALGFVHGA-DIVHAPEPV--------HGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLI 148 (392)
Q Consensus 81 ~~--~~~-iPILGVCLGhQ~La~a~Gg-~V~~apep~--------hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~ 148 (392)
++ ..+ +||||||+|||+|+.++|+ .+...-... +|+.. ..+....++.++ .. +.+.++||+.
T Consensus 67 ~~~~~~~~~PilGiC~G~Q~l~~~~gg~~~~~~lg~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~----~~~~~~Hs~~ 140 (191)
T 2ywd_A 67 RKRVEEGSLALFGTCAGAIWLAKEIVGYPEQPRLGVLEAWVERNAFGRQV-ESFEEDLEVEGL-GS----FHGVFIRAPV 140 (191)
T ss_dssp HHHHHTTCCEEEEETHHHHHHEEEETTCTTCCCCCCEEEEEETTCSCCSS-SEEEEEEEETTT-EE----EEEEEESCCE
T ss_pred HHHHHCCCCeEEEECHHHHHHHHHhCCCCCCccccccceEEEcCCcCCcc-ccccccccccCC-Cc----eeEEEEcccc
Confidence 54 247 9999999999999999998 432111111 22110 001112234444 22 7889999999
Q ss_pred eecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecC
Q 046651 149 IDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHST 228 (392)
Q Consensus 149 V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~ 228 (392)
++. +|++++++|++ + + .+||+++.
T Consensus 141 v~~--l~~~~~~~a~~-~--------------~--------------------------------------~~~a~~~~- 164 (191)
T 2ywd_A 141 FRR--LGEGVEVLARL-G--------------D--------------------------------------LPVLVRQG- 164 (191)
T ss_dssp EEE--ECTTCEEEEEE-T--------------T--------------------------------------EEEEEEET-
T ss_pred eec--cCCCcEEEEEE-C--------------C--------------------------------------EEEEEEEC-
Confidence 976 88999999998 5 4 89999975
Q ss_pred CCEEEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 229 RPHYGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 229 ~P~~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
++||+|||||... .+ +||+||++++
T Consensus 165 -~~~gvQfHPE~~~--~~-~l~~~f~~~~ 189 (191)
T 2ywd_A 165 -KVLASSFHPELTE--DP-RLHRYFLELA 189 (191)
T ss_dssp -TEEEESSCGGGSS--CC-HHHHHHHHHH
T ss_pred -CEEEEEeCCCCCC--Cc-HHHHHHHHHh
Confidence 5999999999743 34 9999999876
No 30
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.89 E-value=1.4e-24 Score=228.07 Aligned_cols=184 Identities=20% Similarity=0.240 Sum_probs=137.3
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC----chhHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE----DIGICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~----d~gi~~~l 79 (392)
.|+|+|||+.+++++++.+.|.+ .|.+++++++.+ + ..+ ..+|+||| ||||++.... +.+ ..++
T Consensus 4 m~~I~Iid~~~g~~~~~~~~l~~-~G~~~~vv~~~~----~--~~l---~~~DglIL-pGgG~~~~~~~~l~~~~-~~~~ 71 (555)
T 1jvn_A 4 MPVVHVIDVESGNLQSLTNAIEH-LGYEVQLVKSPK----D--FNI---SGTSRLIL-PGVGNYGHFVDNLFNRG-FEKP 71 (555)
T ss_dssp SCEEEEECCSCSCCHHHHHHHHH-TTCEEEEESSGG----G--CCS---TTCSCEEE-EECSCHHHHHHHHHHTT-CHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHH-CCCEEEEECCcc----c--ccc---ccCCEEEE-CCCCchHhHhhhhhhcc-HHHH
Confidence 36899999877999999999998 799999887543 2 112 56999999 7778764211 111 1344
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHh------------CCeeeecC-----CCceeceeEEEecCCcccccCCCCCCcceE
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVH------------GADIVHAP-----EPVHGRLSEIVHNGDRLFHDIPSGQNSGFK 140 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~------------Gg~V~~ap-----ep~hG~~s~i~h~g~~LF~~ips~~~s~f~ 140 (392)
|++ ..++||||||+|||+|+.++ |++|.+.+ .+++|+.. +... ++||++++.. +.
T Consensus 72 i~~~~~~g~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~-v~~~-~~L~~~l~~~----~~ 145 (555)
T 1jvn_A 72 IREYIESGKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNS-CIPS-ENLFFGLDPY----KR 145 (555)
T ss_dssp HHHHHHTTCCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEEC-CCCC-TTCCTTCCTT----SC
T ss_pred HHHHHHcCCcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccceE-EEEc-CHHHhhCCCC----ce
Confidence 443 24899999999999999998 78888765 35677753 3334 8899999876 78
Q ss_pred EEeeecceeecCC-----CCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccccccccc
Q 046651 141 VVRYHSLIIDADS-----LPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNR 215 (392)
Q Consensus 141 VvryHSl~V~~~s-----LP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 215 (392)
++++||+.+.... ||+++.++|++++ +.
T Consensus 146 ~~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~--------------~~--------------------------------- 178 (555)
T 1jvn_A 146 YYFVHSFAAILNSEKKKNLENDGWKIAKAKY--------------GS--------------------------------- 178 (555)
T ss_dssp EEEEESEECBCCHHHHHHHHHTTCEEEEEEE--------------TT---------------------------------
T ss_pred EEEEEEEEEEecccccccCCCCCEEEEEEcC--------------CC---------------------------------
Confidence 9999999986521 2567889999875 20
Q ss_pred CCcceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 216 MRREVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 216 ~~~~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
+..+||+++ .++||||||||. ..+.|.+||+||++..
T Consensus 179 --D~~i~ai~~--~~i~GvQFHPE~-s~~~g~~l~~~Fl~~~ 215 (555)
T 1jvn_A 179 --EEFIAAVNK--NNIFATQFHPEK-SGKAGLNVIENFLKQQ 215 (555)
T ss_dssp --EEEEEEEEE--TTEEEESSBGGG-SHHHHHHHHHHHHTTC
T ss_pred --CCeEEEEEe--CCEEEEEeCcEe-cChhHHHHHHHHHhcc
Confidence 118999984 589999999997 4467999999999643
No 31
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=7.6e-23 Score=188.42 Aligned_cols=173 Identities=16% Similarity=0.157 Sum_probs=116.1
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchh---HHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIG---ICLRV 79 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~g---i~~~l 79 (392)
+.|||+|||. ..+-..+++.|.+ .|++++++++. +++ ..+|+|||+||+ |....+.. -..++
T Consensus 19 ~~~~I~ii~~-~~~~~~~~~~l~~-~g~~~~~~~~~----~~l-------~~~d~iil~GG~--~~~~~~~~~~~~~~~~ 83 (208)
T 2iss_D 19 SHMKIGVLGV-QGDVREHVEALHK-LGVETLIVKLP----EQL-------DMVDGLILPGGE--STTMIRILKEMDMDEK 83 (208)
T ss_dssp -CCEEEEECS-SSCHHHHHHHHHH-TTCEEEEECSG----GGG-------GGCSEEEECSSC--HHHHHHHHHHTTCHHH
T ss_pred CCcEEEEEEC-CCchHHHHHHHHH-CCCEEEEeCCh----HHH-------hhCCEEEECCCc--HHHHHhhhhhhhHHHH
Confidence 4589999985 3333356788877 79999888643 333 359999997663 22111110 02344
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHhCCe-----------eeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeec
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVHGAD-----------IVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHS 146 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~Gg~-----------V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHS 146 (392)
|++ ..++||||||+|||+|+.++|+. +.+.+ +|+...... ...+|.+++.. .|.+.++|+
T Consensus 84 i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~---~g~~~~~~~-~~~~~~~~~~~---~~~~~~~h~ 156 (208)
T 2iss_D 84 LVERINNGLPVFATCAGVILLAKRIKNYSQEKLGVLDITVERNA---YGRQVESFE-TFVEIPAVGKD---PFRAIFIRA 156 (208)
T ss_dssp HHHHHHTTCCEEEETHHHHHHEEEEC---CCCCCCEEEEEETTT---TCSGGGCEE-EEECCGGGCSS---CEEEEESSC
T ss_pred HHHHHHCCCeEEEECHHHHHHHHHcCCCCCCCccccceEEEecC---CCccccccc-CCcccccCCCC---ceEEEEEeC
Confidence 554 24899999999999999999984 33222 222110000 12345666522 289999999
Q ss_pred ceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEe
Q 046651 147 LIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMH 226 (392)
Q Consensus 147 l~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h 226 (392)
+.++. +|++++++|++ + + .+||+++
T Consensus 157 ~~v~~--~~~~~~v~a~~-d--------------~--------------------------------------~~~a~~~ 181 (208)
T 2iss_D 157 PRIVE--TGKNVEILATY-D--------------Y--------------------------------------DPVLVKE 181 (208)
T ss_dssp CEEEE--ECSSCEEEEEE-T--------------T--------------------------------------EEEEEEE
T ss_pred ccccc--CCCCcEEEEEE-C--------------C--------------------------------------EEEEEEE
Confidence 99987 78899999998 4 4 7899986
Q ss_pred cCCCEEEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 227 STRPHYGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 227 ~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
.++||+|||||...+ .+||+||++.+
T Consensus 182 --~~i~GvQfHPE~~~~---~~l~~~fl~~~ 207 (208)
T 2iss_D 182 --GNILACTFHPELTDD---LRLHRYFLEMV 207 (208)
T ss_dssp --TTEEEESSCGGGSSC---CHHHHHHHTTC
T ss_pred --CCEEEEEeCCCcCCc---HHHHHHHHHHh
Confidence 479999999999654 38999998754
No 32
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.88 E-value=4.5e-23 Score=214.23 Aligned_cols=193 Identities=22% Similarity=0.291 Sum_probs=127.5
Q ss_pred CccEEEEE-------ECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHH----HhhhcccCCcCEEEECCCCCCCCCCC
Q 046651 3 EFVRTLLI-------DNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDI----CRYLYEENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 3 ~~~r~LlI-------DnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel----~~~l~e~~~fDgIVISpGPGsp~~~~ 71 (392)
..++|.|| |+|.|.+++|.++-.. ++..+.+.+.|..+.++- ...| ..+|+|||+||||.+..
T Consensus 292 ~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~-~~~~V~I~wIds~~l~~~~~~~~~~L---~~~DgIIlpGG~G~~~~-- 365 (535)
T 3nva_A 292 KTINIALVGKYTKLKDSYISIKEAIYHASAY-IGVRPKLIWIESTDLESDTKNLNEIL---GNVNGIIVLPGFGSRGA-- 365 (535)
T ss_dssp CEEEEEEEESCTTSGGGGHHHHHHHHHHHHH-TTCEEEEEEEEGGGGCCSSSCCTTTT---TSCSEEEECCCCSSTTH--
T ss_pred CeeEEEEEecCcCCchhHHHHHHHHHHHHHH-cCCCeEEEEecchhccccccchhhhc---cCCCEEEECCCCCCccH--
Confidence 34788888 4444556667766665 688887776655422110 1122 67999999999998632
Q ss_pred chhHHHHHHHHc--CCCCEEEEcHHHHHHHHHhCCeeeecCC------------Cce------------ec-----eeEE
Q 046651 72 DIGICLRVLLEC--WDVPILGVCLGHQALGFVHGADIVHAPE------------PVH------------GR-----LSEI 120 (392)
Q Consensus 72 d~gi~~~ll~~~--~~iPILGVCLGhQ~La~a~Gg~V~~ape------------p~h------------G~-----~s~i 120 (392)
.+ ..++++.+ .++|+||||+|||+|+.++|+.|..... |+. |. ...+
T Consensus 366 -~g-~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v 443 (535)
T 3nva_A 366 -EG-KIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKI 443 (535)
T ss_dssp -HH-HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEE
T ss_pred -HH-HHHHHHHHHHcCCcEEEECcchhHHHHHhhccccCccCCcccccCCCCCCCeeecchhcccccccCCccccCceEE
Confidence 23 23444432 3999999999999999999999843211 110 10 1112
Q ss_pred E-ecCCcccccCCCCCCcceEEEeeecceeec---CCC-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhc
Q 046651 121 V-HNGDRLFHDIPSGQNSGFKVVRYHSLIIDA---DSL-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILL 195 (392)
Q Consensus 121 ~-h~g~~LF~~ips~~~s~f~VvryHSl~V~~---~sL-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (392)
. ..++.|.+-+.... +.-...|.+.|++ +.+ +++|.++||+++ +
T Consensus 444 ~l~~gS~L~~iyG~~~---I~erHrHryeVNs~h~q~l~~~GL~vsA~s~D--------------G-------------- 492 (535)
T 3nva_A 444 ILKEGTIAYQLYGKKV---VYERHRHRYEVNPKYVDILEDAGLVVSGISEN--------------G-------------- 492 (535)
T ss_dssp EECTTSHHHHHHTSSE---EEEEEEECCEECHHHHHHHHHTTCEEEEECTT--------------C--------------
T ss_pred EEcCCCcHHHHhCCCe---eeecccccceechHHHhhcccCCeEEEEEeCC--------------C--------------
Confidence 2 23444444333220 2222346777754 113 579999999988 6
Q ss_pred ccccccccCCCcccccccccCCcceEEEEEecCCC-EEEEeccCCCCCCch-hHHHHHHHHHHHH
Q 046651 196 SDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRP-HYGVQFHPESIATCY-GSKILRNFREITE 258 (392)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P-~~GVQFHPEsiat~~-G~~I~~NF~~l~~ 258 (392)
.+|||++.++| ++|||||||+.+++. ++.||++|++.|.
T Consensus 493 ------------------------~IEAIE~~~~pf~vGVQfHPE~~~~p~~~~~LF~~Fv~Aa~ 533 (535)
T 3nva_A 493 ------------------------LVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGFIRAVA 533 (535)
T ss_dssp ------------------------CEEEEECTTSSCEEEESSCGGGGCCSSSCCHHHHHHHHHHT
T ss_pred ------------------------CEEEEEeCCCCcEEEEEeCCEecCCCCChhHHHHHHHHHHH
Confidence 89999999999 589999999988764 8999999999874
No 33
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.84 E-value=5.3e-21 Score=177.92 Aligned_cols=192 Identities=16% Similarity=0.167 Sum_probs=123.9
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhC---CCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCc-hhHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTIN---GVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PED-IGIC 76 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~---G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d-~gi~ 76 (392)
..|+|.||+....|+ ..++.|.+ + |+++++++. .+++ ..+|+|||+||+.+... ..+ ..-.
T Consensus 2 ~~~~I~Il~~~~~~~-~~~~~l~~-~~~~G~~~~~~~~----~~~l-------~~~dglil~GG~~~~~~~~~~~d~~~~ 68 (227)
T 2abw_A 2 SEITIGVLSLQGDFE-PHINHFIK-LQIPSLNIIQVRN----VHDL-------GLCDGLVIPGGESTTVRRCCAYENDTL 68 (227)
T ss_dssp CCEEEEEECTTSCCH-HHHHHHHT-TCCTTEEEEEECS----HHHH-------HTCSEEEECCSCHHHHHHHTTHHHHHH
T ss_pred CCcEEEEEeCCCCcH-HHHHHHHH-hccCCeEEEEEcC----cccc-------ccCCEEEECCCcHHHHHHHHHHhHHHH
Confidence 358899999876665 45777877 5 888877763 2444 34999999887743321 111 1123
Q ss_pred HHHHHH--cC-CCCEEEEcHHHHHHHHHhCCeeeecC---CCceeceeE-EEecC----------CcccccCCCCCCcce
Q 046651 77 LRVLLE--CW-DVPILGVCLGHQALGFVHGADIVHAP---EPVHGRLSE-IVHNG----------DRLFHDIPSGQNSGF 139 (392)
Q Consensus 77 ~~ll~~--~~-~iPILGVCLGhQ~La~a~Gg~V~~ap---ep~hG~~s~-i~h~g----------~~LF~~ips~~~s~f 139 (392)
.++|++ .. ++||||||+|||+|+.++|+.+.... .+..|.... +..+. ...+.++..-+.+.|
T Consensus 69 ~~~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~ 148 (227)
T 2abw_A 69 YNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDL 148 (227)
T ss_dssp HHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCCTTCCTTC
T ss_pred HHHHHHHHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCCCccccccccccccccccccCCCce
Confidence 455554 35 89999999999999999998763321 233443321 11111 112333310001238
Q ss_pred EEEeeecceeecCCC-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCc
Q 046651 140 KVVRYHSLIIDADSL-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRR 218 (392)
Q Consensus 140 ~VvryHSl~V~~~sL-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 218 (392)
.++..|++.|.. + |+++.++|++.. +. ..+
T Consensus 149 ~~~~~h~~~v~~--~~~~~~~vla~~~~--------------~~---------------------------------~g~ 179 (227)
T 2abw_A 149 TAACIRAPYIRE--ILSDEVKVLATFSH--------------ES---------------------------------YGP 179 (227)
T ss_dssp EEEEESCCEEEE--ECCTTCEEEEEEEE--------------TT---------------------------------TEE
T ss_pred eEEEEEcceEee--cCCCCcEEEEEccc--------------cc---------------------------------CCC
Confidence 888899999876 6 899999999863 10 001
Q ss_pred ceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHHHHhh
Q 046651 219 EVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREITEDYW 261 (392)
Q Consensus 219 ~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~~~~ 261 (392)
..++|++. .++||+|||||.... .+|++||++.+..+.
T Consensus 180 ~~~~a~~~--~~v~gvQfHPE~~~~---~~l~~~Fl~~~~~~~ 217 (227)
T 2abw_A 180 NIIAAVEQ--NNCLGTVFHPELLPH---TAFQQYFYEKVKNYK 217 (227)
T ss_dssp EEEEEEEE--TTEEEESSCGGGSSC---CHHHHHHHHHHHHHH
T ss_pred CceEEEEE--CCEEEEEECCeeCCC---cHHHHHHHHHHHhhh
Confidence 16788874 579999999998543 499999999986543
No 34
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.72 E-value=1.1e-16 Score=156.95 Aligned_cols=175 Identities=17% Similarity=0.164 Sum_probs=116.7
Q ss_pred CccEEEEEECCCCc---hHHHHHHHHHhCCCCeEE--EeCCCC---------------CHHHHHhhhcccCCcCEEEECC
Q 046651 3 EFVRTLLIDNYDSY---TYNIYQELSTINGVPPVV--VRNDEW---------------TWRDICRYLYEENAFDNIVISP 62 (392)
Q Consensus 3 ~~~r~LlIDnyDSy---T~nl~q~L~~v~G~~pvV--V~nd~~---------------~~eel~~~l~e~~~fDgIVISp 62 (392)
..|||+|+..-... -..+.++|.. .+..+.+ ++...- +++++.. ..|||+||+|
T Consensus 34 rplkI~ILnlmp~k~~te~qf~rlL~~-~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~-----~~~DglIITG 107 (301)
T 2vdj_A 34 RALKIAILNLMPTKQETEAQLLRLIGN-TPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIEN-----EKFDGLIITG 107 (301)
T ss_dssp CCEEEEEECCCSSHHHHHHHHHHHHTC-SSSCEEEEEECCCC------------CCEECHHHHTT-----SCEEEEEECC
T ss_pred CCceEEEEeCCCCcCchHHHHHHHhcC-CCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccc-----cccCEEEECC
Confidence 45899999874332 2345555554 3444443 333211 2444433 7799999999
Q ss_pred CCCCCCCCCc---hhHHHHHHHH--cCCCCEEEEcHHHHHHHHH-hCCeeeecCCCceeceeE-EEecCCcccccCCCCC
Q 046651 63 GPGSPACPED---IGICLRVLLE--CWDVPILGVCLGHQALGFV-HGADIVHAPEPVHGRLSE-IVHNGDRLFHDIPSGQ 135 (392)
Q Consensus 63 GPGsp~~~~d---~gi~~~ll~~--~~~iPILGVCLGhQ~La~a-~Gg~V~~apep~hG~~s~-i~h~g~~LF~~ips~~ 135 (392)
||-.....++ +.-+.++++. ...+|+||||+|||+++++ .|+.....++...|.... +....++||.+++..
T Consensus 108 ap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~~~~pL~~g~~~~- 186 (301)
T 2vdj_A 108 APVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEHEVREQHVKLLQGFDEL- 186 (301)
T ss_dssp CTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCSSCGGGTTCCSE-
T ss_pred CCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCCCCEEEEEEEEecCCCCccccCCCCc-
Confidence 9976544333 2333444444 2489999999999995555 555666666667775433 223467899999887
Q ss_pred CcceEEEee-----ecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccc
Q 046651 136 NSGFKVVRY-----HSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHS 210 (392)
Q Consensus 136 ~s~f~Vvry-----HSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 210 (392)
|.+... |...|.. +| +++++|.++. +
T Consensus 187 ---f~~phsr~~~~~~~~v~~--~p-ga~vLA~S~~--------------~----------------------------- 217 (301)
T 2vdj_A 187 ---FFAVHSRHTEVRESDIRE--VK-ELTLLANSEE--------------A----------------------------- 217 (301)
T ss_dssp ---EEEEEEEEEECCHHHHHT--CT-TEEEEEEETT--------------T-----------------------------
T ss_pred ---eEeeeEeccCcCHHHccC--CC-CCEEEEeCCC--------------C-----------------------------
Confidence 888654 4455555 55 9999999988 6
Q ss_pred cccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 211 IYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 211 ~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
-+++++..+..+||+|||||...
T Consensus 218 ---------~~~~~~~~~~~~~~vQgHpEyd~ 240 (301)
T 2vdj_A 218 ---------GVHLVIGQEGRQVFALGHSEYSC 240 (301)
T ss_dssp ---------EEEEEEEGGGTEEEECSCTTCCT
T ss_pred ---------cceEEEecCCCEEEEECCCCCCH
Confidence 68888876778999999999843
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.71 E-value=1.2e-16 Score=157.17 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=115.2
Q ss_pred CccEEEEEECCCC---chHHHHHHHHHhCCCCeEE--EeCC--CC-------------CHHHHHhhhcccCCcCEEEECC
Q 046651 3 EFVRTLLIDNYDS---YTYNIYQELSTINGVPPVV--VRND--EW-------------TWRDICRYLYEENAFDNIVISP 62 (392)
Q Consensus 3 ~~~r~LlIDnyDS---yT~nl~q~L~~v~G~~pvV--V~nd--~~-------------~~eel~~~l~e~~~fDgIVISp 62 (392)
..|||+|+..-.. |-..+.++|.. .+..+.+ ++.. +. +++++.. ..|||+||+|
T Consensus 46 rplkI~ILnlmp~k~~te~qf~rlL~~-~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~-----~~~DglIITG 119 (312)
T 2h2w_A 46 RPLEILILNLMPDKIKTEIQLLRLLGN-TPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKD-----RKFDGFIITG 119 (312)
T ss_dssp CCEEEEEECCCSSHHHHHHHHHHHHHS-SSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTT-----CCEEEEEECC
T ss_pred CCceEEEEeCCCCcCchHHHHHHHhcC-CCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccc-----cCcCEEEECC
Confidence 4589999987433 23346666664 4544444 3332 11 1333322 6799999999
Q ss_pred CCCCCCCCCc---hhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh-CCeeeecCCCceeceeEEEecCCcccccCCCCCC
Q 046651 63 GPGSPACPED---IGICLRVLLE--CWDVPILGVCLGHQALGFVH-GADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQN 136 (392)
Q Consensus 63 GPGsp~~~~d---~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~-Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~ 136 (392)
||-.....++ +.-+.++++. ...+|+||||+|||++++++ |+.....++...|.........++||.+++..
T Consensus 120 sP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~~~pL~~g~~~~-- 197 (312)
T 2h2w_A 120 APVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGVYKHRVAKDSVLFRGHDDF-- 197 (312)
T ss_dssp CSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEESSCCGGGTTCCSE--
T ss_pred CCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEEEEEEEcCCCccccCCCCc--
Confidence 9976544333 2333344443 24999999999999965555 55555666667776544333478999999887
Q ss_pred cceEEEeeecceeecCCC--CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccc
Q 046651 137 SGFKVVRYHSLIIDADSL--PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSN 214 (392)
Q Consensus 137 s~f~VvryHSl~V~~~sL--P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 214 (392)
|.+...|.-.+..+.+ +++++++|.++. +
T Consensus 198 --f~vphsr~~e~~~~~v~~~pga~vLA~S~~--------------~--------------------------------- 228 (312)
T 2h2w_A 198 --FWAPHSRYTEVKKEDIDKVPELEILAESDE--------------A--------------------------------- 228 (312)
T ss_dssp --EEEEEEEEEECCHHHHTTCC-CEEEEEETT--------------T---------------------------------
T ss_pred --eEeeEEeccccCHHHccCCCCCEEEEcCCC--------------C---------------------------------
Confidence 8887653323222112 249999999988 6
Q ss_pred cCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 215 RMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 215 ~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
-+++++..+..+||||||||...
T Consensus 229 -----~~q~~~~~~~~~~~vQgHPEyd~ 251 (312)
T 2h2w_A 229 -----GVYVVANKSERQIFVTGHPEYDR 251 (312)
T ss_dssp -----EEEEEECSSSSEEEECSCTTCCT
T ss_pred -----cceEEEecCCCEEEEECCCCCCH
Confidence 68889876778999999999843
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.15 E-value=8.1e-10 Score=125.66 Aligned_cols=207 Identities=14% Similarity=0.165 Sum_probs=118.0
Q ss_pred CccEEEEEECCCCch-HHHHHHHHHhCCCCeEEEeCCCC--CHHHHHhhhcccCCcCEEEECCCCCCCCCCCc-h-----
Q 046651 3 EFVRTLLIDNYDSYT-YNIYQELSTINGVPPVVVRNDEW--TWRDICRYLYEENAFDNIVISPGPGSPACPED-I----- 73 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT-~nl~q~L~~v~G~~pvVV~nd~~--~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d-~----- 73 (392)
..+||+|||.+.++. +.++.+|.. .|.++++|...+. ..+++ ..||+|||+||..-.+.+.- .
T Consensus 1046 ~~pkVaIi~~~G~N~~~~~~~A~~~-aG~~~~~v~~~dl~~~~~~l-------~~~d~lvlPGGfSygD~l~~g~~~a~~ 1117 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNSHVEMAAAFHR-AGFDAIDVHMSDLLGGRIGL-------GNFHALVACGGFSYGDVLGAGEGWAKS 1117 (1303)
T ss_dssp CCCEEEEEECTTCCCHHHHHHHHHH-TTCEEEEEEHHHHHTTSCCG-------GGCSEEEECCSCGGGGTTSTTHHHHHH
T ss_pred CCCEEEEEecCCcCCHHHHHHHHHH-hCCceEEEeecccccCcccH-------hhCCEEEECCCCcchhhhccchhHHHH
Confidence 368999999999986 889999998 6999988753210 00122 45999999766422222210 0
Q ss_pred ----hHHHHHHHH---cCCCCEEEEcHHHHHHHHHh----CCe----eee-cCCCceeceeE--EEecCCcccccCCCCC
Q 046651 74 ----GICLRVLLE---CWDVPILGVCLGHQALGFVH----GAD----IVH-APEPVHGRLSE--IVHNGDRLFHDIPSGQ 135 (392)
Q Consensus 74 ----gi~~~ll~~---~~~iPILGVCLGhQ~La~a~----Gg~----V~~-apep~hG~~s~--i~h~g~~LF~~ips~~ 135 (392)
..+.+.+++ ..++|+||||+|||+|+.+. |++ +.+ ...-+..+... |..+.+.+++++. +
T Consensus 1118 ~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~~~~p~l~~N~s~~f~~r~~~~~v~~~~s~~~~~~~-g- 1195 (1303)
T 3ugj_A 1118 ILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMV-G- 1195 (1303)
T ss_dssp HHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEECCCSCGGGTTCT-T-
T ss_pred HHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCCCCCCeEecCCCCCeEEeCeEEEECCCCChhhhccC-C-
Confidence 112223332 35999999999999999872 331 222 22223333333 3346778888875 3
Q ss_pred CcceEEEeeecce---e-ecCCC----CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCc
Q 046651 136 NSGFKVVRYHSLI---I-DADSL----PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSY 207 (392)
Q Consensus 136 ~s~f~VvryHSl~---V-~~~sL----P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 207 (392)
+.+.+.--|... . +++.| .++.+++-+.+.. + . .....-.||+++..
T Consensus 1196 -~~~~i~vaHgEG~~~~~~~~~l~~l~~~~~v~~rY~d~~-------------g-~-----~~~~yp~NPNGS~~----- 1250 (1303)
T 3ugj_A 1196 -SQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNF-------------G-K-----VTETYPANPNGSPN----- 1250 (1303)
T ss_dssp -CEEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTT-------------S-C-----BCCSTTTSSSCCGG-----
T ss_pred -CEEeeeeEeCCCCeeeCCHHHHHHHHhCCcEEEEEeCCC-------------C-C-----cccCCCCCCCCChh-----
Confidence 235555555422 1 11111 1244544444320 1 0 00001123332222
Q ss_pred ccccccccCCcceEEEEEecCCCEEEEeccCCCCCC--------------chhHHHHHHHHHH
Q 046651 208 RHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT--------------CYGSKILRNFREI 256 (392)
Q Consensus 208 ~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat--------------~~G~~I~~NF~~l 256 (392)
-|.||...+..++|++.|||+... ..+.+||+|=++.
T Consensus 1251 ------------~IaGi~s~~Grvlg~MpHPEr~~~~~~~~~~p~~~~~~~pw~~~F~na~~w 1301 (1303)
T 3ugj_A 1251 ------------GITAVTTENGRVTIMMPHPERVFRTVANSWHPENWGEDSPWMRIFRNARKQ 1301 (1303)
T ss_dssp ------------GEEEEECTTSSEEEESSBGGGSSBGGGCSSCCTTCCSBCTTHHHHHHHHHH
T ss_pred ------------hceEeECCCCCEEEEcCChHHccccccccCCCcccCCCCcHHHHHHHHHHh
Confidence 699999999999999999999532 1256777775543
No 37
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.08 E-value=2.2e-06 Score=79.21 Aligned_cols=90 Identities=17% Similarity=0.098 Sum_probs=58.5
Q ss_pred ccEEEEEEC------CCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----Cch
Q 046651 4 FVRTLLIDN------YDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDI 73 (392)
Q Consensus 4 ~~r~LlIDn------yDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~ 73 (392)
.-|+++|+. ++.|...+.+.++. .|++++++.-...+.+++...| .+.|+|++ || |+.... .+.
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~-lG~~v~~~~i~~~~~~~~~~~l---~~ad~I~l-~G-G~~~~l~~~L~~~ 100 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALES-LGLLVEELDIATESLGEITTKL---RKNDFIYV-TG-GNTFFLLQELKRT 100 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHH-TTCEEEECCTTTSCHHHHHHHH---HHSSEEEE-CC-SCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHH-cCCeEEEEEecCCChHHHHHHH---HhCCEEEE-CC-CCHHHHHHHHHHC
Confidence 368999984 33477788888988 7999887753223344433333 45899999 44 554321 122
Q ss_pred hHHHHHHHH--cCCCCEEEEcHHHHHHHH
Q 046651 74 GICLRVLLE--CWDVPILGVCLGHQALGF 100 (392)
Q Consensus 74 gi~~~ll~~--~~~iPILGVCLGhQ~La~ 100 (392)
++ .+.|++ ..++|++|+|.|+|+++.
T Consensus 101 gl-~~~l~~~~~~G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 101 GA-DKLILEEIAAGKLYIGESAGAVITSP 128 (206)
T ss_dssp TH-HHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred Ch-HHHHHHHHHcCCeEEEECHHHHHhcc
Confidence 32 344444 258999999999999875
No 38
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=97.98 E-value=2.4e-06 Score=79.85 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=55.4
Q ss_pred ccEEEEEECCC------CchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----Cch
Q 046651 4 FVRTLLIDNYD------SYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDI 73 (392)
Q Consensus 4 ~~r~LlIDnyD------SyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~ 73 (392)
..|+++||..- .|...+.+.|++ .|+++++++..+...+++. +.|+|+|+ | |+.... .+.
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~-lG~~~~~v~~~~d~~~~l~-------~ad~I~lp-G-G~~~~~~~~l~~~ 100 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAP-LGVNVTGIHRVADPLAAIE-------KAEIIIVG-G-GNTFQLLKESRER 100 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGG-GTCEEEETTSSSCHHHHHH-------HCSEEEEC-C-SCHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEeccccHHHHHh-------cCCEEEEC-C-CcHHHHHHHHHHC
Confidence 46899998752 455567788877 6988776643221125554 48999994 4 554321 111
Q ss_pred hHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 74 GICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 74 gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
++ .+.|++ ..++|++|+|.|+|+|+..
T Consensus 101 gl-~~~l~~~~~~G~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 101 GL-LAPMADRVKRGALYIGWSAGANLACPT 129 (229)
T ss_dssp TC-HHHHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred Ch-HHHHHHHHHcCCEEEEECHHHHhhccc
Confidence 21 233443 2489999999999999874
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=97.41 E-value=0.00023 Score=64.04 Aligned_cols=89 Identities=13% Similarity=0.247 Sum_probs=56.7
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCCC----------------HHHHHhhhcccCCcCEEEECCCC
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEWT----------------WRDICRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~~----------------~eel~~~l~e~~~fDgIVISpGP 64 (392)
+|++|+-. |.+. ..+++.|.+ .|.++.++..+.-. ++++. ...||.|||.||+
T Consensus 24 ~kV~ill~-~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~-----~~~~D~livpGG~ 96 (193)
T 1oi4_A 24 KKIAVLIT-DEFEDSEFTSPADEFRK-AGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVT-----PAEFDALLLPGGH 96 (193)
T ss_dssp CEEEEECC-TTBCTHHHHHHHHHHHH-TTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCC-----GGGCSEEEECCBT
T ss_pred CEEEEEEC-CCCCHHHHHHHHHHHHH-CCCEEEEEECCCCcceecCCCCeEEECCCChHHCC-----cccCCEEEECCCc
Confidence 56777754 4442 245677776 68888888655321 11211 1469999998775
Q ss_pred CCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 65 GSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 65 Gsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
| +....+..-..++|++ ..++||.|||.|.|+|+.+
T Consensus 97 ~-~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 97 S-PDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp H-HHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred C-HHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 4 2211112334566665 3589999999999999987
No 40
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=96.93 E-value=0.00066 Score=60.28 Aligned_cols=91 Identities=11% Similarity=0.144 Sum_probs=56.3
Q ss_pred ccEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC-------------------CHHHHHhhhcccCCcCEEEE
Q 046651 4 FVRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW-------------------TWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 4 ~~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~-------------------~~eel~~~l~e~~~fDgIVI 60 (392)
.+||+|+- +|.+. ...++.|.. .|.++.++..+.- +++++.. ..||.|||
T Consensus 9 ~~~v~il~-~~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~-----~~~D~liv 81 (190)
T 2vrn_A 9 GKKIAILA-ADGVEEIELTSPRAAIEA-AGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQV-----SDYDGLLL 81 (190)
T ss_dssp TCEEEEEC-CTTCBHHHHHHHHHHHHH-TTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCG-----GGCSEEEE
T ss_pred CCEEEEEe-CCCCCHHHHHHHHHHHHH-CCCEEEEEecCCCccccccccccCCcEEeCCCChhhCCh-----hhCCEEEE
Confidence 46788874 45553 235566766 6888877755421 1222211 46999999
Q ss_pred CCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 61 SPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 61 SpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.||++.+..........++|++ ..++||.+||-|-++|+.+
T Consensus 82 pGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 82 PGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp CCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred CCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 8776443321222334566665 3589999999999999986
No 41
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=96.85 E-value=0.0012 Score=57.46 Aligned_cols=90 Identities=17% Similarity=0.248 Sum_probs=56.5
Q ss_pred ccEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC--------------CHHHHHhhhcccCCcCEEEECCCCC
Q 046651 4 FVRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW--------------TWRDICRYLYEENAFDNIVISPGPG 65 (392)
Q Consensus 4 ~~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~--------------~~eel~~~l~e~~~fDgIVISpGPG 65 (392)
.|||+|+-. |.+. ...++.|.. .|.++.++..+.- +++++.. ..||.|||.||+|
T Consensus 2 ~~ki~il~~-~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~-----~~~D~livpGG~~ 74 (168)
T 3l18_A 2 SMKVLFLSA-DGFEDLELIYPLHRIKE-EGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDP-----DEFDALVLPGGKA 74 (168)
T ss_dssp CCEEEEECC-TTBCHHHHHHHHHHHHH-TTCEEEEEESSSEEEECTTSCEEEECEEGGGCCG-----GGCSEEEECCBSH
T ss_pred CcEEEEEeC-CCccHHHHHHHHHHHHH-CCCEEEEEECCCCEEecCCCcEEeccCChhHCCH-----hhCCEEEECCCcC
Confidence 477777744 3432 245677766 6888887765431 1233221 3599999977764
Q ss_pred CCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 66 SPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 66 sp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
. .....-....++|++ ..++||.+||-|.++|+.+
T Consensus 75 ~-~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 75 P-EIVRLNEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp H-HHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred H-HHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 2 211122234566665 3599999999999999986
No 42
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=96.58 E-value=0.0017 Score=58.77 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=56.4
Q ss_pred cEEEEEECCCCch---HHHHHHHHHhCCCCeEEEeCCCC-----------------CHHHHHhhhcccCCcCEEEECCCC
Q 046651 5 VRTLLIDNYDSYT---YNIYQELSTINGVPPVVVRNDEW-----------------TWRDICRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 5 ~r~LlIDnyDSyT---~nl~q~L~~v~G~~pvVV~nd~~-----------------~~eel~~~l~e~~~fDgIVISpGP 64 (392)
+|++|+=..+... ...++.|.+ .|.++.++..+.- +++++.. ..||.|||.||+
T Consensus 3 ~kV~ill~~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~-----~~~D~livpGG~ 76 (205)
T 2ab0_A 3 ASALVCLAPGSEETEAVTTIDLLVR-GGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVAD-----GEYDVIVLPGGI 76 (205)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHH-TTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTT-----SCCSEEEECCCH
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHHH-CCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCc-----ccCCEEEECCCc
Confidence 3676665432222 234567776 6888888765431 2344422 579999998776
Q ss_pred CCCCCCCchhHHHHHHHH--cCCCCEEEEcHHH-HHHHHH
Q 046651 65 GSPACPEDIGICLRVLLE--CWDVPILGVCLGH-QALGFV 101 (392)
Q Consensus 65 Gsp~~~~d~gi~~~ll~~--~~~iPILGVCLGh-Q~La~a 101 (392)
+.+....+.....++|++ ..++||.+||-|- ++|+.+
T Consensus 77 ~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 77 KGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred ccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 544321122334566665 3589999999999 898864
No 43
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=96.58 E-value=0.0026 Score=57.04 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=56.4
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC---------------CHHHH-HhhhcccCCcCEEEECCCC
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW---------------TWRDI-CRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~---------------~~eel-~~~l~e~~~fDgIVISpGP 64 (392)
+|++|+=. |.|. ...++.|.+ .|.++.++..+.- +++++ .. ..||.|||.||+
T Consensus 4 ~~v~ill~-~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~-----~~~D~livpGG~ 76 (197)
T 2rk3_A 4 KRALVILA-KGAEEMETVIPVDVMRR-AGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE-----GPYDVVVLPGGN 76 (197)
T ss_dssp CEEEEEEC-TTCCHHHHHHHHHHHHH-TTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTT-----CCCSEEEECCCH
T ss_pred CEEEEEEC-CCCcHHHHHHHHHHHHH-CCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCc-----cCCCEEEECCCc
Confidence 36666644 3442 235677776 6888888764421 23443 21 579999998776
Q ss_pred CCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 65 GSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 65 Gsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+.+....+.....++|++ ..++||.+||-|-++|+.+
T Consensus 77 ~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 77 LGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 433221122334566665 3589999999999999986
No 44
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=96.58 E-value=0.0034 Score=56.31 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=57.3
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC--------------CHHHHHhhhcccCCcCEEEECCCCCC
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW--------------TWRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~--------------~~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
.++++|=-.|.|- .--++.|++ .|.+++++..+.- +++++.. .+||.|||.||+|.
T Consensus 8 ~~~v~il~~~gFe~~E~~~p~~~l~~-ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~-----~~yD~liiPGG~g~ 81 (177)
T 4hcj_A 8 NNILYVMSGQNFQDEEYFESKKIFES-AGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDA-----VEFDAVVFVGGIGC 81 (177)
T ss_dssp CEEEEECCSEEECHHHHHHHHHHHHH-TTCEEEEEESSSEEEEETTSCEEEECEEGGGCCG-----GGCSEEEECCSGGG
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHH-CCCEEEEEECCCCeEeeCCCCEEecCccHHHCCH-----hHCCEEEECCCccH
Confidence 4566553334442 235577777 7998887765431 2334332 57999999888864
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..-..+ ....+++++ ..++||.+||-|-++|+.+
T Consensus 82 ~~l~~~-~~~~~~l~~~~~~~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 82 ITLWDD-WRTQGLAKLFLDNQKIVAGIGSGVVIMANA 117 (177)
T ss_dssp GGGTTC-HHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHHhhC-HHHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence 322222 334566665 3589999999999999875
No 45
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.52 E-value=0.0056 Score=53.56 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=55.3
Q ss_pred cEEEEEECCCCch---HHHHHHHHHhCCCCeEEEeCCC---------------CCHHHH--HhhhcccCCcCEEEECCC-
Q 046651 5 VRTLLIDNYDSYT---YNIYQELSTINGVPPVVVRNDE---------------WTWRDI--CRYLYEENAFDNIVISPG- 63 (392)
Q Consensus 5 ~r~LlIDnyDSyT---~nl~q~L~~v~G~~pvVV~nd~---------------~~~eel--~~~l~e~~~fDgIVISpG- 63 (392)
+|++|+-.....- +.....+.+ .|.++.++..+. .+++++ .. ..||.|||.||
T Consensus 3 ~~v~ill~~~~~g~~~~~~~e~~~~-~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~-----~~~D~livpGG~ 76 (175)
T 3cne_A 3 KKVAVLAVNPVNGCGLFQYLEAFFE-NGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHE-----DEFDALVFSCGD 76 (175)
T ss_dssp CEEEEEECSSBCHHHHHHHHHHHHH-TTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCG-----GGCSEEEEECCT
T ss_pred cEEEEEEecCcCCCccchhhheeee-CCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCc-----ccCCEEEECCCc
Confidence 5777775431112 344444443 688888886652 123333 11 46999999877
Q ss_pred -CCCCCCCC---chhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 64 -PGSPACPE---DIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 64 -PGsp~~~~---d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
...+.... ......++|++ ..++||.+||-|-++|+.+
T Consensus 77 ~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 77 AVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp TGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred CcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 42333222 22335566665 3589999999999999986
No 46
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=96.44 E-value=0.0037 Score=57.72 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=35.0
Q ss_pred CCcCEEEECCCCCCCCCCCc----------hhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 53 NAFDNIVISPGPGSPACPED----------IGICLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d----------~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
..||.|||.||.|......+ -....++|++ ..++||.+||-|-++|+.++
T Consensus 89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL 150 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIF 150 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHC
T ss_pred ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHh
Confidence 46999999888764211111 2334566665 35999999999999999873
No 47
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=95.94 E-value=0.021 Score=53.63 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=57.3
Q ss_pred EEEEEEC----CCCchH----HHHHHHHHhCCCCeEEEeCCCC-----------------CHH-HHH-------hhhcc-
Q 046651 6 RTLLIDN----YDSYTY----NIYQELSTINGVPPVVVRNDEW-----------------TWR-DIC-------RYLYE- 51 (392)
Q Consensus 6 r~LlIDn----yDSyT~----nl~q~L~~v~G~~pvVV~nd~~-----------------~~e-el~-------~~l~e- 51 (392)
||++|=. ||.|.. ..++.|++ .|.+++++..+.- ... +.. ..|-+
T Consensus 25 kV~ill~~~~~~dG~e~~E~~~p~~vL~~-aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv 103 (242)
T 3l3b_A 25 NSAVILAGCGHMDGSEIREAVLVMLELDR-HNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQI 103 (242)
T ss_dssp EEEEECCCSSTTTSCCHHHHHHHHHHHHH-TTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGC
T ss_pred EEEEEEecCCCCCCeeHHHHHHHHHHHHH-CCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHC
Confidence 6777754 455532 35677777 7999888765431 010 100 00111
Q ss_pred -cCCcCEEEECCCCCCC----CC-------CCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 52 -ENAFDNIVISPGPGSP----AC-------PEDIGICLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 52 -~~~fDgIVISpGPGsp----~~-------~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
...||.|||.||.|.. .. ...-....++|++ ..++||.+||-|-.+|+.+-
T Consensus 104 ~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 104 RVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp CGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred CcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 1469999998886531 10 1112334566655 35999999999999999885
No 48
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=95.68 E-value=0.012 Score=52.25 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=54.7
Q ss_pred EEEEEECCCCch-H---HHHHHHHHhCCCCeEEEeCCC--C-------------CHHHHHhhhcccCCcCEEEECCCCCC
Q 046651 6 RTLLIDNYDSYT-Y---NIYQELSTINGVPPVVVRNDE--W-------------TWRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 6 r~LlIDnyDSyT-~---nl~q~L~~v~G~~pvVV~nd~--~-------------~~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
|++++=. |.|. . ..++.|++ .|.++.++..+. + +++++.. ..||.|||.||.+.
T Consensus 7 kv~ill~-~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~-----~~~D~livpGG~~~ 79 (190)
T 4e08_A 7 SALVILA-PGAEEMEFIIAADVLRR-AGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVAS-----DKFDVVVLPGGLGG 79 (190)
T ss_dssp EEEEEEC-TTCCHHHHHHHHHHHHH-TTCEEEEEESSSSSCEECTTSCEEECSEETGGGTT-----CCCSEEEECCCHHH
T ss_pred EEEEEEC-CCchHHHHHHHHHHHHH-CCCEEEEEECCCCcceecCCCcEEECCCCHHHCCc-----ccCCEEEECCCChH
Confidence 5666643 4442 2 35577776 688888886654 1 1334322 46999999776322
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+....+-....++|++ ..++||.+||-|-++|+.+
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 80 SNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred HHHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 2111112234566665 3599999999999999975
No 49
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=95.22 E-value=0.018 Score=52.25 Aligned_cols=49 Identities=27% Similarity=0.211 Sum_probs=34.7
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||++......+-....++|++ ..++||.+||-|-++|+.+
T Consensus 88 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 88 HGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp SSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 479999998887753222222335566665 3589999999999988865
No 50
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=95.07 E-value=0.072 Score=48.47 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCCCeEEEeCCCC-------------CHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 18 YNIYQELSTINGVPPVVVRNDEW-------------TWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 18 ~nl~q~L~~v~G~~pvVV~nd~~-------------~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
...++.|.+..|.++.++..+.- +++++ ...||.|||.||+|... .+ ....++|++
T Consensus 20 ~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~------~~~~D~livpGG~~~~~--~~-~~l~~~l~~~~ 90 (206)
T 3f5d_A 20 VYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE------PANFNLLVMIGGDSWSN--DN-KKLLHFVKTAF 90 (206)
T ss_dssp HHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS------CSCCSEEEECCBSCCCC--CC-HHHHHHHHHHH
T ss_pred HHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC------CcCCCEEEEcCCCChhh--cC-HHHHHHHHHHH
Confidence 35667776633777776654421 12222 13699999988875433 33 345566665
Q ss_pred cCCCCEEEEcHHHHHHHHH
Q 046651 83 CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a 101 (392)
..++||.+||-|-++|+.+
T Consensus 91 ~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 91 QKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp HTTCCEEEETHHHHHHHHT
T ss_pred HcCCEEEEECHHHHHHHHc
Confidence 3599999999999999986
No 51
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=94.84 E-value=0.095 Score=56.39 Aligned_cols=91 Identities=19% Similarity=0.272 Sum_probs=60.7
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCC-----CCHHHHHhhhcccCCcCEEEECCCCCC-------CC
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDE-----WTWRDICRYLYEENAFDNIVISPGPGS-------PA 68 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~-----~~~eel~~~l~e~~~fDgIVISpGPGs-------p~ 68 (392)
.||+|+-..+.+. ..+.+.|++ .|+.+++|-... .+++++.. ..||+|||.||... |.
T Consensus 538 rKVaILvadG~fE~~El~~p~~aL~~-aGa~V~vVsp~~g~GvD~t~~~~~s-----~~fDAVvlPGG~~~~~~~~~~~d 611 (688)
T 3ej6_A 538 LRVGVLSTTKGGSLDKAKALKEQLEK-DGLKVTVIAEYLASGVDQTYSAADA-----TAFDAVVVAEGAERVFSGKGAMS 611 (688)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHH-TTCEEEEEESSCCTTCCEETTTCCG-----GGCSEEEECTTCCTTTSTTTTCC
T ss_pred CEEEEEccCCCccHHHHHHHHHHHHH-CCCEEEEEeCCCCCCcccCcccCCh-----hcCcEEEECCCcccccccccchh
Confidence 5676663311243 346678887 799999996532 13444433 46999999888543 34
Q ss_pred CCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 69 CPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 69 ~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
....-+-..+++++ ...+||-.||-|-++|..+
T Consensus 612 ~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 612 PLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp TTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 34444456677766 3599999999999999876
No 52
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=94.78 E-value=0.09 Score=47.73 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=34.3
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.+.. . .+-....++|++ ..+++|.+||-|-.+|+.+
T Consensus 73 ~~~D~livpGG~~~~-~-~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 73 ESKDLLILPGGTTWS-E-EIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp CTTCEEEECCCSCTT-S-GGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred cCCCEEEECCCCccc-c-ccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 379999998887632 2 223345566665 2489999999999999976
No 53
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=94.66 E-value=0.12 Score=45.67 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCCeEEEeCCCC--------------CHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 19 NIYQELSTINGVPPVVVRNDEW--------------TWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 19 nl~q~L~~v~G~~pvVV~nd~~--------------~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
..++.|.+..|.++.++..+.- +++++.. ..||.|||.||++... ..+ .-..++|++
T Consensus 19 ~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~-----~~~D~livpGG~~~~~-~~~-~~l~~~l~~~~ 91 (188)
T 2fex_A 19 LLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDP-----VDIDALVIPGGLSWEK-GTA-ADLGGLVKRFR 91 (188)
T ss_dssp HHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCT-----TTCSEEEECCBSHHHH-TCC-CCCHHHHHHHH
T ss_pred HHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCc-----ccCCEEEECCCCcccc-ccc-HHHHHHHHHHH
Confidence 3556665435777777765431 1222211 3699999988765211 111 112344444
Q ss_pred cCCCCEEEEcHHHHHHHHH
Q 046651 83 CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a 101 (392)
..++||.+||-|-++|+.+
T Consensus 92 ~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 92 DRDRLVAGICAAASALGGT 110 (188)
T ss_dssp HTTCEEEEETHHHHHHHHT
T ss_pred HCCCEEEEECHHHHHHHHC
Confidence 2489999999999999976
No 54
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=94.26 E-value=0.049 Score=53.92 Aligned_cols=48 Identities=25% Similarity=0.438 Sum_probs=34.0
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||+| +....+-....++|++ ..++||.+||-|-++|+.+
T Consensus 281 ~~~D~livpGg~~-~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 281 SSYDALVIPGGRA-PEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp GGCSEEEECCBSH-HHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred ccCCEEEECCCcc-hhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 4699999977765 2211122334566665 3599999999999999986
No 55
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=93.89 E-value=0.066 Score=52.98 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=55.7
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC------------------------------CHHHHHhhhc
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW------------------------------TWRDICRYLY 50 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~------------------------------~~eel~~~l~ 50 (392)
+|++|+= +|.|. ...++.|++ .|.++.++..+.. +++++..
T Consensus 13 ~kv~ill-~dg~e~~E~~~~~~~l~~-ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~--- 87 (396)
T 3uk7_A 13 RTVLILC-GDYMEDYEVMVPFQALQA-FGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDL--- 87 (396)
T ss_dssp CEEEEEC-CTTEEHHHHHHHHHHHHH-TTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCG---
T ss_pred CeEEEEe-CCCccHHHHHHHHHHHHH-CCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCc---
Confidence 3566554 34543 235677776 7888888755421 1223211
Q ss_pred ccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 51 EENAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 51 e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.| +....+-....++|++ ..++||.+||-|-++|+.+
T Consensus 88 --~~~D~livpGG~~-~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 88 --SKYDGLVIPGGRA-PEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp --GGCSEEEECCBSH-HHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred --ccCCEEEECCCcc-hhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 4699999987765 2211222334566665 3599999999999999987
No 56
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=93.85 E-value=0.024 Score=51.33 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=53.9
Q ss_pred EEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCC-C--------------CHHHHHhhhcccCCcCEEEECCCCCC
Q 046651 6 RTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDE-W--------------TWRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 6 r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~-~--------------~~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
||+|+=. |.|. ...++.|.. .|.++.++..+. . +++++.. ..||.|||.||.+.
T Consensus 11 ~v~ill~-~g~~~~e~~~~~~~l~~-ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~-----~~~D~livpGG~~~ 83 (208)
T 3ot1_A 11 RILVPVA-HGSEEMETVIIVDTLVR-AGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSA-----EAFDALALPGGVGG 83 (208)
T ss_dssp EEEEEEC-TTCCHHHHHHHHHHHHH-TTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCG-----GGCSEEEECCCHHH
T ss_pred eEEEEEC-CCCcHHHHHHHHHHHHH-CCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCC-----cCCCEEEECCCchH
Confidence 5666643 4442 235567766 688888876652 1 1233211 36999999777543
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHH-HHHHHH
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGH-QALGFV 101 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGh-Q~La~a 101 (392)
+....+-....++|++ ..+++|.+||-|- .+|+.+
T Consensus 84 ~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 84 AQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred HHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 3221122234566665 3599999999998 788763
No 57
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=93.53 E-value=0.059 Score=58.01 Aligned_cols=91 Identities=22% Similarity=0.250 Sum_probs=60.6
Q ss_pred cEEEEEEC-CCCch----HHHHHHHHHhCCCCeEEEeCCCC-----CHHHHHhhhcccCCcCEEEECCCCCC--------
Q 046651 5 VRTLLIDN-YDSYT----YNIYQELSTINGVPPVVVRNDEW-----TWRDICRYLYEENAFDNIVISPGPGS-------- 66 (392)
Q Consensus 5 ~r~LlIDn-yDSyT----~nl~q~L~~v~G~~pvVV~nd~~-----~~eel~~~l~e~~~fDgIVISpGPGs-------- 66 (392)
+||+|+-. .|.+. ..+.+.|++ .|+.++||....- +++++.. ..||+|||.||..+
T Consensus 530 ~kVaIL~a~~dGfe~~E~~~~~~~L~~-aG~~V~vVs~~~g~~vD~t~~~~~s-----~~fDAVvlPGG~~g~~~~~~~~ 603 (688)
T 2iuf_A 530 LKVGLLASVNKPASIAQGAKLQVALSS-VGVDVVVVAERXANNVDETYSASDA-----VQFDAVVVADGAEGLFGADSFT 603 (688)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHGG-GTCEEEEEESSCCTTCCEESTTCCG-----GGCSEEEECTTCGGGCCTTTTT
T ss_pred CEEEEEecCCCCCcHHHHHHHHHHHHH-CCCEEEEEeccCCcccccchhcCCc-----cccCeEEecCCCcccccccccc
Confidence 57777754 14443 246677777 7999999965432 1223222 46999999988543
Q ss_pred --------CCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 67 --------PACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 67 --------p~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+.....-+-..+++++ ..++||-.||-|-++|..+
T Consensus 604 ~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 604 VEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp CCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred cccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 4444444556777776 2499999999999998865
No 58
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=93.33 E-value=0.02 Score=53.20 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=34.0
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.|.......-....++|++ ..++||.+||-|-.+|+.+
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 469999998887643222222334566655 3599999999999888875
No 59
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=93.13 E-value=0.043 Score=59.49 Aligned_cols=88 Identities=18% Similarity=0.117 Sum_probs=57.0
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC--------------CHHHHHhhhcccCCcCEEEECCCCCC
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW--------------TWRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~--------------~~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
.||+|+=. |.|. ..+++.|++ .|+.+++|..+.- +++++.. ..||+|||.|| .
T Consensus 601 rKVaILla-DGfEe~El~~pvdaLr~-AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s-----~~fDALVVPGG--g 671 (753)
T 3ttv_A 601 RVVAILLN-DEVRSADLLAILKALKA-KGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPS-----LTVDAVIVPCG--N 671 (753)
T ss_dssp CEEEEECC-TTCCHHHHHHHHHHHHH-HTCEEEEEESSSSEEECTTSCEEECCEETTTSCG-----GGCSEEEECCS--C
T ss_pred CEEEEEec-CCCCHHHHHHHHHHHHH-CCCEEEEEEcCCCeEEeCCCCEEecccchhhCCC-----cCCCEEEECCC--C
Confidence 46666632 3442 346777877 6999888865432 1223222 34999999777 3
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+.....-.-..++|++ ..++||-+||-|-++|+.+
T Consensus 672 ~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 672 IADIADNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp GGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred hHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 3333333445677776 3599999999999999876
No 60
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=92.29 E-value=0.094 Score=56.73 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=56.9
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC--------------CHHHHHhhhcccCCcCEEEECCCCCC
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW--------------TWRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~--------------~~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
+||+||-. |.+. ...++.|.. .|++++++..+.- +++++. ...||.|||.||.+.
T Consensus 535 rkVaILl~-dGfe~~El~~p~dvL~~-AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~-----~~~yDaViVPGG~~~ 607 (715)
T 1sy7_A 535 RRVAIIIA-DGYDNVAYDAAYAAISA-NQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFR-----STMVDAIFIPGGAKA 607 (715)
T ss_dssp CEEEEECC-TTBCHHHHHHHHHHHHH-TTCEEEEEESCSSCEEBTTSCEECCSEETTTCC-----GGGSSEEEECCCHHH
T ss_pred CEEEEEEc-CCCCHHHHHHHHHHHHh-cCCEEEEEECCCCceecCCCceEecccccccCC-----cccCCEEEEcCCccc
Confidence 57777744 4442 235667766 6898888865431 112211 135999999777433
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHHhC
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFVHG 103 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~G 103 (392)
+.....-.-..++|++ ..++||.+||-|-.+|+.+.|
T Consensus 608 ~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 608 AETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred HhhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 3221122334566665 358999999999999998854
No 61
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=91.82 E-value=0.15 Score=45.88 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=35.1
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.+..... ....++|++ ..+++|.+||-|-.+|+.+
T Consensus 70 ~~~D~livpGG~~~~~~~---~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 70 KELDLLVVCGGLRTPLKY---PELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp TTCSEEEEECCTTCCSCC---TTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred CCCCEEEEeCCCchhhcc---HHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 679999998887654432 335566665 2489999999999999987
No 62
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=91.59 E-value=0.17 Score=50.48 Aligned_cols=88 Identities=18% Similarity=0.119 Sum_probs=53.9
Q ss_pred EEEEEECCCCchH----HHHHHHHHhCCCCeEEEeCCCCC----------------HHHHHhhhcccCCcCEEEECCCCC
Q 046651 6 RTLLIDNYDSYTY----NIYQELSTINGVPPVVVRNDEWT----------------WRDICRYLYEENAFDNIVISPGPG 65 (392)
Q Consensus 6 r~LlIDnyDSyT~----nl~q~L~~v~G~~pvVV~nd~~~----------------~eel~~~l~e~~~fDgIVISpGPG 65 (392)
||+|+- +|.|.. ..++.|.. .|.++.++..+.-. ++++. ...||.|||.||+|
T Consensus 12 kV~ILl-~dgf~~~El~~p~dvL~~-Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~-----~~~~DaLiVPGG~g 84 (365)
T 3fse_A 12 KVAILI-EQAVEDTEFIIPCNGLKQ-AGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAI-----ASEFDAVVIPGGMA 84 (365)
T ss_dssp EEEEEC-CTTBCHHHHHHHHHHHHH-TTCEEEEEESSSSCCEECTTSCCEECCSEETTTCC-----GGGCSEEEECCBTH
T ss_pred EEEEEE-CCCCcHHHHHHHHHHHHH-CCCEEEEEECCCCceeecCCCceEEeCCCCHhhCC-----CcCCCEEEEECCcc
Confidence 555553 455532 35677766 68888777554321 11211 12599999988774
Q ss_pred CCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 66 SPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 66 sp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
. ....+-.-..++|++ ..++||.+||-|-.+|+.+
T Consensus 85 ~-~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 85 P-DKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp H-HHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred h-hhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 3 211122234566665 3599999999999999986
No 63
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=91.58 E-value=0.16 Score=48.97 Aligned_cols=73 Identities=25% Similarity=0.336 Sum_probs=49.8
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
+.||++||-+.+.-...+.+.|.. .|+++.+..... +.+ ..+|.||.-||-|+ .++..+.
T Consensus 28 ~~mki~iv~~~~~~~~~l~~~L~~-~g~~v~~~~~~~---~~~-------~~~DlvIvlGGDGT---------~L~aa~~ 87 (278)
T 1z0s_A 28 GGMRAAVVYKTDGHVKRIEEALKR-LEVEVELFNQPS---EEL-------ENFDFIVSVGGDGT---------ILRILQK 87 (278)
T ss_dssp --CEEEEEESSSTTHHHHHHHHHH-TTCEEEEESSCC---GGG-------GGSSEEEEEECHHH---------HHHHHTT
T ss_pred cceEEEEEeCCcHHHHHHHHHHHH-CCCEEEEccccc---ccc-------CCCCEEEEECCCHH---------HHHHHHH
Confidence 469999998876556678888877 698876543322 222 35899998899875 3455555
Q ss_pred cCC-CCEEEEcHHH
Q 046651 83 CWD-VPILGVCLGH 95 (392)
Q Consensus 83 ~~~-iPILGVCLGh 95 (392)
..+ +||+||=.|+
T Consensus 88 ~~~~~PilGIN~G~ 101 (278)
T 1z0s_A 88 LKRCPPIFGINTGR 101 (278)
T ss_dssp CSSCCCEEEEECSS
T ss_pred hCCCCcEEEECCCC
Confidence 334 9999999874
No 64
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=90.91 E-value=0.028 Score=52.98 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=34.4
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.|.......-....++|++ ..++||.+||-|-.+|+.+
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 469999998887653222222334566665 3599999999999888765
No 65
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=90.11 E-value=0.096 Score=50.26 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=35.6
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
..||.|||.||+|......+-....++|++ ..+++|.+||-|-.+|+.+.
T Consensus 144 ~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 144 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred ccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 679999998887755332222335566665 35899999999988877763
No 66
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=89.91 E-value=0.035 Score=52.11 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=34.1
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.|......+-....++|++ ..++||.+||-|-.+|+.+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 469999998887653222222334566665 3599999999999888765
No 67
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=89.72 E-value=0.28 Score=44.38 Aligned_cols=49 Identities=8% Similarity=-0.054 Sum_probs=33.4
Q ss_pred CCcCEEEECCCCCCCCC-CCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPAC-PEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~-~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.+.... ..+-....++|++ ..+++|.+||-|-.+|+.+
T Consensus 73 ~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 73 DFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp SCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 46999999666542211 1122334566665 3589999999999999987
No 68
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=88.19 E-value=0.31 Score=44.92 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=54.7
Q ss_pred cEEEEEECCCCchH----HHHHHHHHhCCCCeEEEeCCCCCH---HH--H--HhhhcccCCcCEEEECCCCCCCCCCCch
Q 046651 5 VRTLLIDNYDSYTY----NIYQELSTINGVPPVVVRNDEWTW---RD--I--CRYLYEENAFDNIVISPGPGSPACPEDI 73 (392)
Q Consensus 5 ~r~LlIDnyDSyT~----nl~q~L~~v~G~~pvVV~nd~~~~---ee--l--~~~l~e~~~fDgIVISpGPGsp~~~~d~ 73 (392)
+||+|+ -+|.|.. ..++.|....|.++.++..+.-.. .. + ...+-+...||.|||.||+|......+
T Consensus 6 ~~V~il-l~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~~~D~livpGG~g~~~~~~~- 83 (231)
T 3noq_A 6 VQIGFL-LFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGVGALMED- 83 (231)
T ss_dssp EEEEEE-CCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTCCCCSEEEECCSTTHHHHTTC-
T ss_pred EEEEEE-EeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHCCcCCEEEECCCCChhhhccC-
Confidence 356555 3455532 355666654677776665432100 00 0 000112246999999888764221222
Q ss_pred hHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 74 GICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 74 gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
....++|++ ..+.+|.+||-|-.+|+.+
T Consensus 84 ~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 84 PQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp HHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 234566665 3599999999999999976
No 69
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=87.89 E-value=1.1 Score=35.28 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=48.4
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+|+||||........+.+.|.. .|..+++.. +.++....+ +...+|.||+.-.- |. ...+.++.++-..
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dlvi~d~~l--~~-~~g~~~~~~l~~~ 76 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSS-LGATTVLAA----DGVDALELL-GGFTPDLMICDIAM--PR-MNGLKLLEHIRNR 76 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----CHHHHHHHH-TTCCCSEEEECCC--------CHHHHHHHHHT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-CCceEEEeC----CHHHHHHHH-hcCCCCEEEEecCC--CC-CCHHHHHHHHHhc
Confidence 457999999755555567777776 687765432 245555544 44679999995321 11 1234444444333
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
...+||+-+.-
T Consensus 77 ~~~~~ii~~t~ 87 (130)
T 3eod_A 77 GDQTPVLVISA 87 (130)
T ss_dssp TCCCCEEEEEC
T ss_pred CCCCCEEEEEc
Confidence 45889987763
No 70
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=87.33 E-value=1.2 Score=35.19 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=46.4
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeE-EEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPV-VVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pv-VV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
.||+||||....+...+-+.|.. .|..++ ...+.+..++.+.. ..+|.||+--.- |. ...+.++.++-..
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~~a~~~~~~-----~~~dlii~d~~l--~~-~~g~~~~~~l~~~ 71 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVET-----LKPDIVIIDVDI--PG-VNGIQVLETLRKR 71 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHH-TTEEEEEEESSSTTHHHHHHH-----HCCSEEEEETTC--SS-SCHHHHHHHHHHT
T ss_pred CeEEEEEcCCHHHHHHHHHHHhh-CCcEEEEEcCCHHHHHHHHHh-----cCCCEEEEecCC--CC-CChHHHHHHHHhc
Confidence 37999999755555667777776 676655 33333322333333 579999994221 11 1223444444333
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
..++||+-+.-
T Consensus 72 ~~~~~ii~~s~ 82 (134)
T 3f6c_A 72 QYSGIIIIVSA 82 (134)
T ss_dssp TCCSEEEEEEC
T ss_pred CCCCeEEEEeC
Confidence 55889887764
No 71
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=86.81 E-value=1 Score=36.87 Aligned_cols=83 Identities=10% Similarity=0.017 Sum_probs=49.6
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..++|||||........+.+.|.. .|..++.+. +.++....+ +...+|.||+--. -|. ...+.++..+-..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dlvi~d~~--l~~-~~g~~~~~~l~~~ 76 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKR-LGCNIITFT----SPLDALEAL-KGTSVQLVISDMR--MPE-MGGEVFLEQVAKS 76 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHT-TTCEEEEES----CHHHHHHHH-TTSCCSEEEEESS--CSS-SCHHHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHH-cCCeEEEeC----CHHHHHHHH-hcCCCCEEEEecC--CCC-CCHHHHHHHHHHh
Confidence 458999999865555667777776 687655432 245555544 3356999998422 111 1223444444444
Q ss_pred cCCCCEEEEcHH
Q 046651 83 CWDVPILGVCLG 94 (392)
Q Consensus 83 ~~~iPILGVCLG 94 (392)
...+||+-+.-.
T Consensus 77 ~~~~~ii~ls~~ 88 (154)
T 2rjn_A 77 YPDIERVVISGY 88 (154)
T ss_dssp CTTSEEEEEECG
T ss_pred CCCCcEEEEecC
Confidence 558999887643
No 72
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=86.79 E-value=0.86 Score=36.31 Aligned_cols=84 Identities=8% Similarity=0.052 Sum_probs=47.7
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCC-CCC-CCCchhHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG-SPA-CPEDIGICLRVLL 81 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPG-sp~-~~~d~gi~~~ll~ 81 (392)
.+|+||||........+.+.|.. .|..+..+.+ .++....+ +...+|.||+--.-. ... ....+.++.++-.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~a~~~l-~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~ 76 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKN-HFSKVITLSS----PVSLSTVL-REENPEVVLLDMNFTSGINNGNEGLFWLHEIKR 76 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSSEEEEECC----HHHHHHHH-HHSCEEEEEEETTTTC-----CCHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHh-CCcEEEEeCC----HHHHHHHH-HcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHh
Confidence 57899999865555566677766 5776654432 34544443 235699999943211 000 1122344444444
Q ss_pred HcCCCCEEEEcH
Q 046651 82 ECWDVPILGVCL 93 (392)
Q Consensus 82 ~~~~iPILGVCL 93 (392)
....+||+-+.-
T Consensus 77 ~~~~~~ii~ls~ 88 (140)
T 2qr3_A 77 QYRDLPVVLFTA 88 (140)
T ss_dssp HCTTCCEEEEEE
T ss_pred hCcCCCEEEEEC
Confidence 456899988863
No 73
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=86.16 E-value=1.4 Score=35.23 Aligned_cols=84 Identities=11% Similarity=0.143 Sum_probs=49.5
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH-
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL- 81 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~- 81 (392)
..+|+||||........+.+.|.. .|..+..+.+ .++....+ +...+|.||+--. -|. ...+.++.++-.
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~-~g~~v~~~~~----~~~a~~~l-~~~~~dlvi~d~~--l~~-~~g~~~~~~l~~~ 75 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEK-GGFDSDMVHS----AAQALEQV-ARRPYAAMTVDLN--LPD-QDGVSLIRALRRD 75 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHH-TTCEEEEECS----HHHHHHHH-HHSCCSEEEECSC--CSS-SCHHHHHHHHHTS
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHH-CCCeEEEECC----HHHHHHHH-HhCCCCEEEEeCC--CCC-CCHHHHHHHHHhC
Confidence 347999999865555567777776 7877544432 44554443 3367999999422 111 122344434332
Q ss_pred -HcCCCCEEEEcHHH
Q 046651 82 -ECWDVPILGVCLGH 95 (392)
Q Consensus 82 -~~~~iPILGVCLGh 95 (392)
...++||+-+.-..
T Consensus 76 ~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 76 SRTRDLAIVVVSANA 90 (140)
T ss_dssp GGGTTCEEEEECTTH
T ss_pred cccCCCCEEEEecCC
Confidence 23589999887544
No 74
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=85.96 E-value=1.3 Score=35.55 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=48.5
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcc-cCCcCEEEECCCCCCCCCCCchhHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYE-ENAFDNIVISPGPGSPACPEDIGICLRVLL 81 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e-~~~fDgIVISpGPGsp~~~~d~gi~~~ll~ 81 (392)
..+|+||||........+...|.. .|..+.... +.++....+.+ ...+|.||+--.- | ....+.++.++-.
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~-~g~~v~~~~----~~~~a~~~~~~~~~~~dlvi~d~~l--~-~~~g~~~~~~l~~ 73 (143)
T 3jte_A 2 SLAKILVIDDESTILQNIKFLLEI-DGNEVLTAS----SSTEGLRIFTENCNSIDVVITDMKM--P-KLSGMDILREIKK 73 (143)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----SHHHHHHHHHHTTTTCCEEEEESCC--S-SSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHh-CCceEEEeC----CHHHHHHHHHhCCCCCCEEEEeCCC--C-CCcHHHHHHHHHH
Confidence 357899999765555667777776 687655433 24455544432 3579999994221 1 1123344444443
Q ss_pred HcCCCCEEEEcH
Q 046651 82 ECWDVPILGVCL 93 (392)
Q Consensus 82 ~~~~iPILGVCL 93 (392)
...++||+-+.-
T Consensus 74 ~~~~~~ii~ls~ 85 (143)
T 3jte_A 74 ITPHMAVIILTG 85 (143)
T ss_dssp HCTTCEEEEEEC
T ss_pred hCCCCeEEEEEC
Confidence 455889887764
No 75
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=85.58 E-value=1.9 Score=33.91 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=47.9
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+++||||........+.+.|.. .|..++.+. +.++....+.+...+|.||+--. -|.....+.++.++-..
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l~~~~~~dlvi~d~~--l~~~~~g~~~~~~l~~~ 76 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTD-AGFLVTAVS----SGAKAIEMLKSGAAIDGVVTDIR--FCQPPDGWQVARVAREI 76 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHH-TTCEEEEES----SHHHHHHHHHTTCCCCEEEEESC--CSSSSCHHHHHHHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHH-cCCEEEEEC----CHHHHHHHHHcCCCCCEEEEeee--CCCCCCHHHHHHHHHhc
Confidence 457999999865555567777775 687665432 24555544422127999998422 12101223444444333
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
...+||+-+.-
T Consensus 77 ~~~~~ii~~s~ 87 (132)
T 2rdm_A 77 DPNMPIVYISG 87 (132)
T ss_dssp CTTCCEEEEES
T ss_pred CCCCCEEEEeC
Confidence 45788887753
No 76
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=85.38 E-value=0.99 Score=35.49 Aligned_cols=81 Identities=12% Similarity=0.192 Sum_probs=46.8
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+|+||||........+.+.|.. .|..+..+. +.++....+ +...+|.||+--. -| ....+.++.++-..
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dlii~D~~--l~-~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 2 SLQQALIVEDYQAAAETFKELLEM-LGFQADYVM----SGTDALHAM-STRGYDAVFIDLN--LP-DTSGLALVKQLRAL 72 (127)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHH-TTEEEEEES----SHHHHHHHH-HHSCCSEEEEESB--CS-SSBHHHHHHHHHHS
T ss_pred CcceEEEEcCCHHHHHHHHHHHHH-cCCCEEEEC----CHHHHHHHH-HhcCCCEEEEeCC--CC-CCCHHHHHHHHHhh
Confidence 357899999855555667777776 687554443 245555444 3367999999422 11 11223434443333
Q ss_pred --cCCCCEEEEc
Q 046651 83 --CWDVPILGVC 92 (392)
Q Consensus 83 --~~~iPILGVC 92 (392)
..++||+-+.
T Consensus 73 ~~~~~~~ii~~s 84 (127)
T 3i42_A 73 PMEKTSKFVAVS 84 (127)
T ss_dssp CCSSCCEEEEEE
T ss_pred hccCCCCEEEEE
Confidence 3578888765
No 77
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=85.16 E-value=1 Score=36.93 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=48.6
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+++||||........+...|.. .|..+..+. +.++....+ +...+|.||+--.- |. ...+.++..+...
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dliild~~l--~~-~~g~~~~~~l~~~ 72 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLEL-AGFTVSSFA----SATEALAGL-SADFAGIVISDIRM--PG-MDGLALFRKILAL 72 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----CHHHHHHTC-CTTCCSEEEEESCC--SS-SCHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH-cCcEEEEEC----CHHHHHHHH-HhCCCCEEEEeCCC--CC-CCHHHHHHHHHhh
Confidence 458999999865556667777776 687665432 245665544 33579999985321 11 1223444444434
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
...+||+-+.
T Consensus 73 ~~~~pii~ls 82 (155)
T 1qkk_A 73 DPDLPMILVT 82 (155)
T ss_dssp CTTSCEEEEE
T ss_pred CCCCCEEEEE
Confidence 5589998775
No 78
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=85.12 E-value=1.1 Score=36.58 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=46.4
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+|+||||........+.+.|....|..++..-. +.++....+ +...+|.||+--.- |. ...+.++.++-..
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~---~~~~a~~~l-~~~~~dlii~D~~l--~~-~~g~~~~~~l~~~ 76 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAA---DAGEAYRLY-RETTPDIVVMDLTL--PG-PGGIEATRHIRQW 76 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEES---SHHHHHHHH-HTTCCSEEEECSCC--SS-SCHHHHHHHHHHH
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeC---CHHHHHHHH-hcCCCCEEEEecCC--CC-CCHHHHHHHHHHh
Confidence 45799999986555555666665434655441222 245555444 33569999994221 11 1233444444434
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
...+||+-+.
T Consensus 77 ~~~~~ii~ls 86 (153)
T 3cz5_A 77 DGAARILIFT 86 (153)
T ss_dssp CTTCCEEEEE
T ss_pred CCCCeEEEEE
Confidence 5588988776
No 79
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=85.09 E-value=0.96 Score=36.56 Aligned_cols=81 Identities=11% Similarity=0.109 Sum_probs=48.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH--
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL-- 81 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~-- 81 (392)
.+||||||........+.+.|.. .|..+..+. +.++....+. ...+|.||+--.- |. ...+.++..+-.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l~-~~~~dlii~d~~l--~~-~~g~~~~~~l~~~~ 78 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQ-EGFDIIQCG----NAIEAVPVAV-KTHPHLIITEANM--PK-ISGMDLFNSLKKNP 78 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHH-HTEEEEEES----SHHHHHHHHH-HHCCSEEEEESCC--SS-SCHHHHHHHHHTST
T ss_pred CceEEEEeCCHHHHHHHHHHHHH-cCCeEEEeC----CHHHHHHHHH-cCCCCEEEEcCCC--CC-CCHHHHHHHHHcCc
Confidence 47899999877777778888877 587655433 2445544332 2469999994221 11 122344444333
Q ss_pred HcCCCCEEEEcH
Q 046651 82 ECWDVPILGVCL 93 (392)
Q Consensus 82 ~~~~iPILGVCL 93 (392)
....+||+-+.-
T Consensus 79 ~~~~~pii~ls~ 90 (147)
T 2zay_A 79 QTASIPVIALSG 90 (147)
T ss_dssp TTTTSCEEEEES
T ss_pred ccCCCCEEEEeC
Confidence 235899988764
No 80
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=84.73 E-value=2.3 Score=32.83 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=44.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
||+||||........+.+.|.. .|..+..+.+ .++....+ +...+|.||+--. -|. ...+.++.++.....
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~-~g~~v~~~~~----~~~a~~~~-~~~~~dlil~D~~--l~~-~~g~~~~~~l~~~~~ 71 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQD-AGHQVDDAED----AKEADYYL-NEHIPDIAIVDLG--LPD-EDGLSLIRRWRSNDV 71 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHSCCSEEEECSC--CSS-SCHHHHHHHHHHTTC
T ss_pred CeEEEEeCcHHHHHHHHHHHhh-cCCEEEEeCC----HHHHHHHH-hccCCCEEEEecC--CCC-CCHHHHHHHHHhcCC
Confidence 6899999755555566677766 6876544332 33444333 2257999998422 121 122333333332245
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+|++-+.
T Consensus 72 ~~~ii~~s 79 (121)
T 2pl1_A 72 SLPILVLT 79 (121)
T ss_dssp CSCEEEEE
T ss_pred CCCEEEEe
Confidence 78988774
No 81
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=84.58 E-value=1.2 Score=35.59 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=46.2
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH-
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL- 81 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~- 81 (392)
..+++||||........+.+.|.. .|..+..+. +.++....+ +...+|.||+--. -|. ...+.++.++-.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dlii~d~~--l~~-~~g~~~~~~l~~~ 76 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSD-AGFHIISAD----SGGQCIDLL-KKGFSGVVLLDIM--MPG-MDGWDTIRAILDN 76 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----SHHHHHHHH-HTCCCEEEEEESC--CSS-SCHHHHHHHHHHT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHH-CCeEEEEeC----CHHHHHHHH-HhcCCCEEEEeCC--CCC-CCHHHHHHHHHhh
Confidence 357899999865566667777877 587654432 245555444 3356999998422 111 122333433333
Q ss_pred -HcCCCCEEEEc
Q 046651 82 -ECWDVPILGVC 92 (392)
Q Consensus 82 -~~~~iPILGVC 92 (392)
....+||+.+.
T Consensus 77 ~~~~~~pii~~s 88 (142)
T 3cg4_A 77 SLEQGIAIVMLT 88 (142)
T ss_dssp TCCTTEEEEEEE
T ss_pred cccCCCCEEEEE
Confidence 13467777664
No 82
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=84.42 E-value=1.6 Score=36.11 Aligned_cols=80 Identities=9% Similarity=0.095 Sum_probs=46.5
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeE-EEeCCCCCHHHHHhhhcccC--CcCEEEECCCCCCCCCCCchhHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPV-VVRNDEWTWRDICRYLYEEN--AFDNIVISPGPGSPACPEDIGICLRVLL 81 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pv-VV~nd~~~~eel~~~l~e~~--~fDgIVISpGPGsp~~~~d~gi~~~ll~ 81 (392)
+||||||........|.+.|.. .|..++ .+.+ .+++...+.+ . .+|.||+--.- |. ...+.++.++-.
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~----~~~al~~l~~-~~~~~dliilD~~l--~~-~~g~~~~~~lr~ 107 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTS-EGFNIIDTAAD----GEEAVIKYKN-HYPNIDIVTLXITM--PK-MDGITCLSNIME 107 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEEESS----HHHHHHHHHH-HGGGCCEEEECSSC--SS-SCHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHh-CCCeEEEEECC----HHHHHHHHHh-cCCCCCEEEEeccC--CC-ccHHHHHHHHHh
Confidence 6899999754455556677766 687664 3322 3455444422 3 68999994221 11 223444444444
Q ss_pred HcCCCCEEEEcH
Q 046651 82 ECWDVPILGVCL 93 (392)
Q Consensus 82 ~~~~iPILGVCL 93 (392)
....+||+-+.-
T Consensus 108 ~~~~~~ii~ls~ 119 (157)
T 3hzh_A 108 FDKNARVIMISA 119 (157)
T ss_dssp HCTTCCEEEEES
T ss_pred hCCCCcEEEEec
Confidence 456899987763
No 83
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=84.29 E-value=1.1 Score=35.83 Aligned_cols=81 Identities=10% Similarity=-0.015 Sum_probs=47.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.|||||||........+-+.|.. .|..+..+.+ .++....+ +...+|.||+--.- | ....+.++.++-...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~----~~~a~~~l-~~~~~dlvi~d~~l--~-~~~g~~~~~~l~~~~ 77 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISN-HFPEVWSAGD----GEEGERLF-GLHAPDVIITDIRM--P-KLGGLEMLDRIKAGG 77 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHT-TCSCEEEESS----HHHHHHHH-HHHCCSEEEECSSC--S-SSCHHHHHHHHHHTT
T ss_pred ccEEEEEeCCHHHHHHHHHHHHh-cCcEEEEECC----HHHHHHHH-hccCCCEEEEeCCC--C-CCCHHHHHHHHHhcC
Confidence 47999999865555667777776 6766655433 34444433 23579999994321 1 122344444443334
Q ss_pred CCCCEEEEcH
Q 046651 84 WDVPILGVCL 93 (392)
Q Consensus 84 ~~iPILGVCL 93 (392)
..+||+-+.-
T Consensus 78 ~~~~ii~~s~ 87 (137)
T 3hdg_A 78 AKPYVIVISA 87 (137)
T ss_dssp CCCEEEECCC
T ss_pred CCCcEEEEec
Confidence 5888887763
No 84
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=83.47 E-value=0.38 Score=45.25 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=54.3
Q ss_pred cEEEEEECCCCchH----HHHHHHHHhCCCCeEEEeCCCCC--------------HHHHHhhhcccCCcCEEEECCCC-C
Q 046651 5 VRTLLIDNYDSYTY----NIYQELSTINGVPPVVVRNDEWT--------------WRDICRYLYEENAFDNIVISPGP-G 65 (392)
Q Consensus 5 ~r~LlIDnyDSyT~----nl~q~L~~v~G~~pvVV~nd~~~--------------~eel~~~l~e~~~fDgIVISpGP-G 65 (392)
+||+|+= +|.|.. ..++.|....|.++.++..+.-. ++++. ..||.|||.||. |
T Consensus 24 ~~I~ill-~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~------~~yD~liVPGG~~g 96 (253)
T 3ewn_A 24 EQIAMLV-YPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCP------RDLTVLFAPGGTDG 96 (253)
T ss_dssp CEEEEEC-CTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSC------SSCSEEEECCBSHH
T ss_pred eEEEEEe-CCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcC------CCCCEEEECCCccc
Confidence 4666664 455532 35566644468888777554311 11211 357999997776 5
Q ss_pred CCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 66 SPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 66 sp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
......+ .-..++|++ ..+++|.+||-|-.+|+.+
T Consensus 97 ~~~l~~~-~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 97 TLAAASD-AETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp HHHHTTC-HHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred hhhhccC-HHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 3221222 234566665 3589999999999999986
No 85
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=83.33 E-value=0.88 Score=36.55 Aligned_cols=80 Identities=11% Similarity=0.170 Sum_probs=47.4
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+++||||........+.+.|.. .|..+..+. +.++....+ +...+|.||+-- .|. ...+.++..+-...
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dlvi~d~---~~~-~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEK-DGFNVIWAK----NEQEAFTFL-RREKIDLVFVDV---FEG-EESLNLIRRIREEF 73 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGG-GTCEEEEES----SHHHHHHHH-TTSCCSEEEEEC---TTT-HHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHh-CCCEEEEEC----CHHHHHHHH-hccCCCEEEEeC---CCC-CcHHHHHHHHHHHC
Confidence 46899999765555667777776 687665432 245555544 336799999943 121 11223333333334
Q ss_pred CCCCEEEEcH
Q 046651 84 WDVPILGVCL 93 (392)
Q Consensus 84 ~~iPILGVCL 93 (392)
.++||+.+.-
T Consensus 74 ~~~pii~ls~ 83 (142)
T 2qxy_A 74 PDTKVAVLSA 83 (142)
T ss_dssp TTCEEEEEES
T ss_pred CCCCEEEEEC
Confidence 5799998863
No 86
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=83.26 E-value=1.4 Score=33.28 Aligned_cols=78 Identities=15% Similarity=0.076 Sum_probs=45.2
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC- 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~- 83 (392)
+++||||........+.+.|.. .|..+..+.+ .++....+. ...+|.||+.-.- +. .....++ +.+++.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~-~g~~v~~~~~----~~~~~~~l~-~~~~dlii~d~~~--~~-~~~~~~~-~~l~~~~ 71 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTA-AGFKVIWLVD----GSTALDQLD-LLQPIVILMAWPP--PD-QSCLLLL-QHLREHQ 71 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHH-TTCEEEEESC----HHHHHHHHH-HHCCSEEEEECST--TC-CTHHHHH-HHHHHTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHh-CCcEEEEecC----HHHHHHHHH-hcCCCEEEEecCC--CC-CCHHHHH-HHHHhcc
Confidence 6899999865556667777776 6876654432 344444332 2468999984321 11 1223333 334442
Q ss_pred --CCCCEEEEc
Q 046651 84 --WDVPILGVC 92 (392)
Q Consensus 84 --~~iPILGVC 92 (392)
..+|++-+.
T Consensus 72 ~~~~~~ii~~~ 82 (119)
T 2j48_A 72 ADPHPPLVLFL 82 (119)
T ss_dssp CCSSCCCEEEE
T ss_pred ccCCCCEEEEe
Confidence 578887665
No 87
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=83.16 E-value=2 Score=34.16 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=46.5
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCC-eEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVP-PVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~-pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
.+++||||........+.+.|....|.. +..+.+ .++....+ +...+|.||+--.- |. ...+.++.+ +++
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~----~~~a~~~l-~~~~~dlii~d~~l--~~-~~g~~~~~~-l~~ 78 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYN----PFDAGDLL-HTVKPDVVMLDLMM--VG-MDGFSICHR-IKS 78 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECS----HHHHHHHH-HHTCCSEEEEETTC--TT-SCHHHHHHH-HHT
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECC----HHHHHHHH-HhcCCCEEEEeccc--CC-CcHHHHHHH-HHh
Confidence 4789999976555556777777646888 444332 34444433 23579999995321 11 122333333 443
Q ss_pred ---cCCCCEEEEcH
Q 046651 83 ---CWDVPILGVCL 93 (392)
Q Consensus 83 ---~~~iPILGVCL 93 (392)
...+||+-+.-
T Consensus 79 ~~~~~~~~ii~~s~ 92 (143)
T 3cnb_A 79 TPATANIIVIAMTG 92 (143)
T ss_dssp STTTTTSEEEEEES
T ss_pred CccccCCcEEEEeC
Confidence 35789988763
No 88
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=82.64 E-value=1.8 Score=35.40 Aligned_cols=81 Identities=14% Similarity=0.049 Sum_probs=47.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.++|||||........|-+.|.. .|..+..+. +.++....+ +...+|.||+--. -| ....+.++.++-...
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dlvi~D~~--l~-~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSP-LPYTLHFAR----DATQALQLL-ASREVDLVISAAH--LP-QMDGPTLLARIHQQY 84 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-SSCEEEEES----SHHHHHHHH-HHSCCSEEEEESC--CS-SSCHHHHHHHHHHHC
T ss_pred CceEEEECCCHHHHHHHHHHhcc-cCcEEEEEC----CHHHHHHHH-HcCCCCEEEEeCC--CC-cCcHHHHHHHHHhHC
Confidence 47899999755555556666765 576654432 244554433 3367999999422 11 112334444443345
Q ss_pred CCCCEEEEcH
Q 046651 84 WDVPILGVCL 93 (392)
Q Consensus 84 ~~iPILGVCL 93 (392)
.++||+-+.-
T Consensus 85 ~~~~ii~~s~ 94 (153)
T 3hv2_A 85 PSTTRILLTG 94 (153)
T ss_dssp TTSEEEEECC
T ss_pred CCCeEEEEEC
Confidence 6889987764
No 89
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=82.55 E-value=2 Score=34.09 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=47.4
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
.+++||||........+-+.|.. .|..++.+.+ .++....+.+...+|.||+--.- |. ...+.++.++-..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~a~~~~~~~~~~dlvi~D~~l--~~-~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKS-RGIDAVGADG----AEEARLYLHYQKRIGLMITDLRM--QP-ESGLDLIRTIRASE 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHH-TTCCEEEESS----HHHHHHHHHHCTTEEEEEECSCC--SS-SCHHHHHHHHHTST
T ss_pred CCeEEEECCCHHHHHHHHHHHHH-cCceEEEeCC----HHHHHHHHHhCCCCcEEEEeccC--CC-CCHHHHHHHHHhcC
Confidence 46899999865556667777777 6887765432 34444444333349999994221 11 1223333333322
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
...+||+-+.-
T Consensus 79 ~~~~~ii~~s~ 89 (136)
T 3hdv_A 79 RAALSIIVVSG 89 (136)
T ss_dssp TTTCEEEEEES
T ss_pred CCCCCEEEEeC
Confidence 35789887764
No 90
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=82.33 E-value=0.37 Score=43.68 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=33.1
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||+|......+ ....++|++ ..+++|.+||-|-.+|+.+
T Consensus 64 ~~~D~livpGG~~~~~~~~~-~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 64 NIEKILFVPGGSGTREKVND-DNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp SSEEEEEECCSTHHHHHTTC-HHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred CCCCEEEECCCcchhhhcCC-HHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 35899999877653221112 234566665 2489999999999999975
No 91
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=82.23 E-value=1.6 Score=35.62 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=46.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.|||||||....+...|.+.|.. .|....|..... .++....+ +...+|.||+--. -|. ...+.++.++-...
T Consensus 20 m~~iLivdd~~~~~~~l~~~L~~-~~~~~~v~~~~~--~~~al~~l-~~~~~dlii~D~~--l~~-~~g~~~~~~l~~~~ 92 (150)
T 4e7p_A 20 HMKVLVAEDQSMLRDAMCQLLTL-QPDVESVLQAKN--GQEAIQLL-EKESVDIAILDVE--MPV-KTGLEVLEWIRSEK 92 (150)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHT-STTEEEEEEESS--HHHHHHHH-TTSCCSEEEECSS--CSS-SCHHHHHHHHHHTT
T ss_pred ccEEEEEcCCHHHHHHHHHHHHh-CCCcEEEEEECC--HHHHHHHh-hccCCCEEEEeCC--CCC-CcHHHHHHHHHHhC
Confidence 47899999755555556666765 443233333322 45555544 3467999999422 111 12334444443335
Q ss_pred CCCCEEEEcH
Q 046651 84 WDVPILGVCL 93 (392)
Q Consensus 84 ~~iPILGVCL 93 (392)
.++||+-+.-
T Consensus 93 ~~~~ii~ls~ 102 (150)
T 4e7p_A 93 LETKVVVVTT 102 (150)
T ss_dssp CSCEEEEEES
T ss_pred CCCeEEEEeC
Confidence 5889987764
No 92
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=81.54 E-value=4.9 Score=32.15 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=48.6
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+|+||||........+-+.|.. .|...+|..... .++....+ +...+|.||+--. -|. ...+.++ +.|++
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~-~~~~~~v~~~~~--~~~a~~~l-~~~~~dlii~D~~--l~~-~~g~~~~-~~lr~ 75 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDR-KDIHCQLEFVDN--GAKALYQV-QQAKYDLIILDIG--LPI-ANGFEVM-SAVRK 75 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHH-TTCCEEEEEESS--HHHHHHHH-TTCCCSEEEECTT--CGG-GCHHHHH-HHHHS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHh-cCCCeeEEEECC--HHHHHHHh-hcCCCCEEEEeCC--CCC-CCHHHHH-HHHHh
Confidence 347899999755555667777776 687754444333 45555544 3467999999422 111 1123333 33443
Q ss_pred ---cCCCCEEEEcH
Q 046651 83 ---CWDVPILGVCL 93 (392)
Q Consensus 83 ---~~~iPILGVCL 93 (392)
..++||+-+.-
T Consensus 76 ~~~~~~~pii~~s~ 89 (144)
T 3kht_A 76 PGANQHTPIVILTD 89 (144)
T ss_dssp SSTTTTCCEEEEET
T ss_pred cccccCCCEEEEeC
Confidence 35899998873
No 93
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=81.49 E-value=6.2 Score=36.71 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=51.5
Q ss_pred ccEEEEEECCC--CchHHHHHHHHHhC--CCCeEEEeCCCC--------CHHHHHhhhc------ccCCcCEEEECCCCC
Q 046651 4 FVRTLLIDNYD--SYTYNIYQELSTIN--GVPPVVVRNDEW--------TWRDICRYLY------EENAFDNIVISPGPG 65 (392)
Q Consensus 4 ~~r~LlIDnyD--SyT~nl~q~L~~v~--G~~pvVV~nd~~--------~~eel~~~l~------e~~~fDgIVISpGPG 65 (392)
.||+|||.-.. ++|..|.+.++.+. |.+++.+..+.- +|......++ +...+|+|||+-.
T Consensus 1 ~mrilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCn-- 78 (245)
T 3qvl_A 1 SVRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASF-- 78 (245)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-C--
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCC--
Confidence 48999997654 36777777777765 344444433211 1221111111 2357999999532
Q ss_pred CCCCCCchhHHHHHHHHcCCCCEEEEcHHHHHHHHHhCCee
Q 046651 66 SPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADI 106 (392)
Q Consensus 66 sp~~~~d~gi~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V 106 (392)
.+-++ +.+++.-++||+||.--.-..+...|.++
T Consensus 79 -----t~~~l--~~lr~~~~iPvigi~e~~~~~a~~~~~ri 112 (245)
T 3qvl_A 79 -----GDPGL--LAARELAQGPVIGIAEAAMHMATMVATRF 112 (245)
T ss_dssp -----CCTTH--HHHHHHCSSCEEEHHHHHHHHHHHHCSCE
T ss_pred -----ChhHH--HHHHHHcCCCEECccHHHHHHHHHcCCEE
Confidence 23233 55666449999999654333333345444
No 94
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=81.42 E-value=2 Score=35.39 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=47.7
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+||||||........+.+.|.. .|..+..+. +.++....+ +...+|.||+--. -|. ...+.++ +.|++.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~al~~l-~~~~~dlii~D~~--l~~-~~g~~~~-~~lr~~ 76 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEE-TGYQTEHVR----NGREAVRFL-SLTRPDLIISDVL--MPE-MDGYALC-RWLKGQ 76 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT-TTCEEEEES----SHHHHHHHH-TTCCCSEEEEESC--CSS-SCHHHHH-HHHHHS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHH-CCCEEEEeC----CHHHHHHHH-HhCCCCEEEEeCC--CCC-CCHHHHH-HHHHhC
Confidence 47999999865555667777776 687665442 245555544 3467999999421 111 1223333 334442
Q ss_pred ---CCCCEEEEc
Q 046651 84 ---WDVPILGVC 92 (392)
Q Consensus 84 ---~~iPILGVC 92 (392)
.++||+-+.
T Consensus 77 ~~~~~~pii~~s 88 (154)
T 3gt7_A 77 PDLRTIPVILLT 88 (154)
T ss_dssp TTTTTSCEEEEE
T ss_pred CCcCCCCEEEEE
Confidence 589999876
No 95
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=81.02 E-value=0.27 Score=45.73 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCcCEEEECCC-CCCCCCCCchhHHHHHHHHcCCC-CEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPG-PGSPACPEDIGICLRVLLECWDV-PILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpG-PGsp~~~~d~gi~~~ll~~~~~i-PILGVCLGhQ~La~a 101 (392)
..||.|||.|| +|......+ ....++|....+. +|.+||-|-.+|+.+
T Consensus 79 ~~~D~liVPGG~~g~~~l~~~-~~l~~~L~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 79 KEQDVVLITSGYRGIPAALQD-ENFMSALKLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp GGCSEEEECCCTTHHHHHHTC-HHHHHHCCCCTTTCEEEEETTHHHHHHHT
T ss_pred cCCCEEEEcCCccCHhhhccC-HHHHHHHHhCCCCCEEEEEcHHHHHHHHc
Confidence 56999999887 554321122 2234555223355 999999999999986
No 96
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=80.77 E-value=7 Score=31.58 Aligned_cols=86 Identities=16% Similarity=0.057 Sum_probs=46.7
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..|||||||........|.+.|....|...+..-. +.++....+-+...+|.||+--.- |. ...+.++.++-..
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~---~~~~a~~~l~~~~~~dlvi~d~~l--~~-~~g~~~~~~l~~~ 75 (154)
T 2qsj_A 2 SLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAE---TVSDALAFLEADNTVDLILLDVNL--PD-AEAIDGLVRLKRF 75 (154)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEES---SHHHHHHHHHTTCCCSEEEECC---------CHHHHHHHHHH
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEec---CHHHHHHHHhccCCCCEEEEeCCC--CC-CchHHHHHHHHHh
Confidence 35799999976555666777777744663322222 245555554222569999994321 11 1233444444444
Q ss_pred cCCCCEEEEcHH
Q 046651 83 CWDVPILGVCLG 94 (392)
Q Consensus 83 ~~~iPILGVCLG 94 (392)
...+||+-++--
T Consensus 76 ~~~~~ii~ls~~ 87 (154)
T 2qsj_A 76 DPSNAVALISGE 87 (154)
T ss_dssp CTTSEEEEC---
T ss_pred CCCCeEEEEeCC
Confidence 568999988754
No 97
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=79.88 E-value=7.3 Score=30.40 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=48.3
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcc------cCCcCEEEECCCCCCCCCCCchhHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYE------ENAFDNIVISPGPGSPACPEDIGICL 77 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e------~~~fDgIVISpGPGsp~~~~d~gi~~ 77 (392)
.+|+||||........+.+.|.. .|....|..... .++....+.+ ...+|.||+--.- |. ...+.++.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~-~~~~~~v~~~~~--~~~a~~~l~~~~~~~~~~~~dlvi~d~~~--~~-~~g~~~~~ 75 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALAN-STVPHEVVTVRD--GMEAMAYLRQEGEYANASRPDLILLXLNL--PK-KDGREVLA 75 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHT-CSSCCEEEEECS--HHHHHHHHTTCGGGGSCCCCSEEEECSSC--SS-SCHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHh-cCCCceEEEECC--HHHHHHHHHcccccccCCCCcEEEEecCC--Cc-ccHHHHHH
Confidence 47999999765556667777776 676433333332 4666665533 1569999994221 11 12233333
Q ss_pred HHHHHc--CCCCEEEEcH
Q 046651 78 RVLLEC--WDVPILGVCL 93 (392)
Q Consensus 78 ~ll~~~--~~iPILGVCL 93 (392)
++-... ..+||+-+.-
T Consensus 76 ~l~~~~~~~~~pii~ls~ 93 (140)
T 1k68_A 76 EIKSDPTLKRIPVVVLST 93 (140)
T ss_dssp HHHHSTTGGGSCEEEEES
T ss_pred HHHcCcccccccEEEEec
Confidence 333322 4789988764
No 98
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=79.24 E-value=8.3 Score=32.90 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=37.7
Q ss_pred cEEEEEECC-CCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC 69 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~ 69 (392)
|+++||=.- -.+|..+++.|++. .|+++.++.-.+.+.+++..-+ ..+|+||| |+|..
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~---~~~d~ii~----Gspty 62 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAV---SSARGIVL----GTPPS 62 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHH---HHCSEEEE----ECCBS
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHH---HhCCEEEE----EcCCc
Confidence 778777432 23466677776553 4888888887776677765433 46999999 56654
No 99
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=79.13 E-value=5.2 Score=30.51 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=43.5
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+++||||........+...|.. .|..+....+ .++....+ +...+|.|++--. -|. ...+.++.++-....
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~----~~~a~~~~-~~~~~dlvl~D~~--l~~-~~g~~~~~~l~~~~~ 72 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQE-EGYEIDTAEN----GEEALKKF-FSGNYDLVILDIE--MPG-ISGLEVAGEIRKKKK 72 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHSCCSEEEECSC--CSS-SCHHHHHHHHHHHCT
T ss_pred cEEEEEeCCHHHHHHHHHHHHH-CCCEEEEeCC----HHHHHHHH-hcCCCCEEEEECC--CCC-CCHHHHHHHHHccCC
Confidence 5899999865555566677776 6876553332 34444433 2257999998421 121 112333333333344
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
++|++-+.
T Consensus 73 ~~~ii~~s 80 (116)
T 3a10_A 73 DAKIILLT 80 (116)
T ss_dssp TCCEEEEE
T ss_pred CCeEEEEE
Confidence 77877654
No 100
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=78.70 E-value=3.5 Score=32.73 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=45.5
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+||||||........+.+.|.. .|..+..+.+ .+++...+ +...+|.|| .|+ ...+.++..+-..
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~al~~l-~~~~~dlvi-~~~------~~g~~~~~~l~~~ 83 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNV-KGFMADVTES----LEDGEYLM-DIRNYDLVM-VSD------KNALSFVSRIKEK 83 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHH-TTCEEEEESC----HHHHHHHH-HHSCCSEEE-ECS------TTHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH-cCcEEEEeCC----HHHHHHHH-HcCCCCEEE-EcC------ccHHHHHHHHHhc
Confidence 357999999755555566777776 6876654322 34554433 235789888 221 1223444444333
Q ss_pred cC-CCCEEEEcH
Q 046651 83 CW-DVPILGVCL 93 (392)
Q Consensus 83 ~~-~iPILGVCL 93 (392)
. .+||+-+.-
T Consensus 84 -~~~~~ii~ls~ 94 (137)
T 2pln_A 84 -HSSIVVLVSSD 94 (137)
T ss_dssp -STTSEEEEEES
T ss_pred -CCCccEEEEeC
Confidence 5 789988763
No 101
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=78.68 E-value=3.3 Score=36.06 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=46.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
||+||||........+.+.|.. .|..+..+.+ .++....+ +...+|.||+--. -|. ...+.++.++-....
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~a~~~~-~~~~~dlvllD~~--l~~-~~g~~~~~~lr~~~~ 73 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKK-EMFTVDVCYD----GEEGMYMA-LNEPFDVVILDIM--LPV-HDGWEILKSMRESGV 73 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHSCCSEEEEESC--CSS-SCHHHHHHHHHHTTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHH-hcCCCCEEEEeCC--CCC-CCHHHHHHHHHhcCC
Confidence 7899999865556667777776 6877654332 34444333 2357999998422 121 122333444333345
Q ss_pred CCCEEEEcH
Q 046651 85 DVPILGVCL 93 (392)
Q Consensus 85 ~iPILGVCL 93 (392)
++||+-+.-
T Consensus 74 ~~~ii~ls~ 82 (225)
T 1kgs_A 74 NTPVLMLTA 82 (225)
T ss_dssp CCCEEEEES
T ss_pred CCCEEEEeC
Confidence 889987763
No 102
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=78.67 E-value=1.8 Score=33.51 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=44.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
+|+||||........+.+.|.. .|..+....+ .++....+ +...+|.||+--.- |.....+.++..+-..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~a~~~~-~~~~~dlvi~d~~~--~~~~~g~~~~~~l~~~~~ 77 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEG-RGFTVDETTD----GKGSVEQI-RRDRPDLVVLAVDL--SAGQNGYLICGKLKKDDD 77 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-HTCEEEEECC----HHHHHHHH-HHHCCSEEEEESBC--GGGCBHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHh-cCceEEEecC----HHHHHHHH-HhcCCCEEEEeCCC--CCCCCHHHHHHHHhcCcc
Confidence 3799999865566667777877 6887654432 34444433 22469999984221 1011223333333332
Q ss_pred cCCCCEEEE
Q 046651 83 CWDVPILGV 91 (392)
Q Consensus 83 ~~~iPILGV 91 (392)
..++||+-+
T Consensus 78 ~~~~~ii~~ 86 (127)
T 2gkg_A 78 LKNVPIVII 86 (127)
T ss_dssp TTTSCEEEE
T ss_pred ccCCCEEEE
Confidence 358999887
No 103
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=78.62 E-value=2.7 Score=33.33 Aligned_cols=83 Identities=11% Similarity=0.108 Sum_probs=47.9
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+++||||........+.+.|.. .|..++.+-.+ .++....+ +...+|.||+--. -|.....+.++..+-..
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~---~~~a~~~~-~~~~~dlii~d~~--~~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLES-LGYDVLGVFDN---GEEAVRCA-PDLRPDIALVDIM--LCGALDGVETAARLAAG 80 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHH-HTCEEEEEESS---HHHHHHHH-HHHCCSEEEEESS--CCSSSCHHHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHH-CCCeeEEEECC---HHHHHHHH-HhCCCCEEEEecC--CCCCCCHHHHHHHHHhC
Confidence 357999999865566667777877 58776522222 34444433 2256999999422 11111233444444333
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
..+||+-+.-
T Consensus 81 -~~~~ii~ls~ 90 (140)
T 3cg0_A 81 -CNLPIIFITS 90 (140)
T ss_dssp -SCCCEEEEEC
T ss_pred -CCCCEEEEec
Confidence 5899987763
No 104
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=78.15 E-value=0.47 Score=45.85 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=52.5
Q ss_pred ccEEEEEECC----CCchHHHHHHHHHhCCC-CeEEEeCCC---CCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCch
Q 046651 4 FVRTLLIDNY----DSYTYNIYQELSTINGV-PPVVVRNDE---WTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDI 73 (392)
Q Consensus 4 ~~r~LlIDny----DSyT~nl~q~L~~v~G~-~pvVV~nd~---~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~ 73 (392)
..|+++|-.- +.|.....+.+++ +|+ .+.++.-.. ..-+++...| ...|+|+|+||--.-.. ..+.
T Consensus 56 ~~~I~~IptAs~~~~~~~~~~~~~f~~-lG~~~v~~L~i~~r~~a~~~~~~~~l---~~ad~I~v~GGnt~~l~~~l~~t 131 (291)
T 3en0_A 56 DAIIGIIPSASREPLLIGERYQTIFSD-MGVKELKVLDIRDRAQGDDSGYRLFV---EQCTGIFMTGGDQLRLCGLLADT 131 (291)
T ss_dssp GCEEEEECTTCSSHHHHHHHHHHHHHH-HCCSEEEECCCCSGGGGGCHHHHHHH---HHCSEEEECCSCHHHHHHHHTTC
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHH-cCCCeeEEEEecCccccCCHHHHHHH---hcCCEEEECCCCHHHHHHHHHhC
Confidence 3689999542 2345556677777 698 455554321 1123344444 56999999876421100 1122
Q ss_pred hHHHHHHHH--cCC-CCEEEEcHHHHHHHH
Q 046651 74 GICLRVLLE--CWD-VPILGVCLGHQALGF 100 (392)
Q Consensus 74 gi~~~ll~~--~~~-iPILGVCLGhQ~La~ 100 (392)
++ .++|++ .++ +|+.|+|-|.-+++.
T Consensus 132 ~l-~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 132 PL-MDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp HH-HHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred CH-HHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 32 333443 246 999999999777653
No 105
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=78.06 E-value=3.6 Score=32.33 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=42.9
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
.+|+||||........+...|. .|..+....+ .++....+ +...+|.||+--.- |. ...+.++.++-..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~--~~~~v~~~~~----~~~a~~~l-~~~~~dlvi~d~~l--~~-~~g~~~~~~l~~~~ 73 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS--GEFDCTTAAD----GASGLQQA-LAHPPDVLISDVNM--DG-MDGYALCGHFRSEP 73 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT--TTSEEEEESS----HHHHHHHH-HHSCCSEEEECSSC--SS-SCHHHHHHHHHHST
T ss_pred CCEEEEEcCCHHHHHHHHHHHh--CCcEEEEECC----HHHHHHHH-hcCCCCEEEEeCCC--CC-CCHHHHHHHHHhCC
Confidence 4789999975445555555554 5766554432 34444433 33679999994221 11 1223333333322
Q ss_pred -cCCCCEEEEc
Q 046651 83 -CWDVPILGVC 92 (392)
Q Consensus 83 -~~~iPILGVC 92 (392)
..++||+-+.
T Consensus 74 ~~~~~pii~~s 84 (133)
T 3nhm_A 74 TLKHIPVIFVS 84 (133)
T ss_dssp TTTTCCEEEEE
T ss_pred ccCCCCEEEEe
Confidence 2478888775
No 106
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=77.89 E-value=3 Score=37.59 Aligned_cols=78 Identities=23% Similarity=0.176 Sum_probs=46.6
Q ss_pred ccEEEEEEC--------CCCchHHHHHHHHHhCCCCeEEE--eCCCCCHHHHHhhhccc--CCcCEEEECCCCCCCCCCC
Q 046651 4 FVRTLLIDN--------YDSYTYNIYQELSTINGVPPVVV--RNDEWTWRDICRYLYEE--NAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 4 ~~r~LlIDn--------yDSyT~nl~q~L~~v~G~~pvVV--~nd~~~~eel~~~l~e~--~~fDgIVISpGPGsp~~~~ 71 (392)
.+|+.||-- +|++.+.|..+|.+ .|.+++.+ -.|+ .+++...|-+. ..+|.||++||-|- . +.
T Consensus 30 ~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~-~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~DlVIttGGts~-g-~~ 104 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHGDEDHSGPLVTELLTE-AGFVVDGVVAVEAD--EVDIRNALNTAVIGGVDLVVSVGGTGV-T-PR 104 (185)
T ss_dssp CEEEEEEEECHHHHTTCCCSHHHHHHHHHHH-TTEEEEEEEEECSC--HHHHHHHHHHHHHTTCSEEEEESCCSS-S-TT
T ss_pred CCEEEEEEECcccCCCCcCcHHHHHHHHHHH-CCCEEEEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCCCCC-C-Cc
Confidence 467777722 78888899999988 78876432 2343 34444444332 46899999988653 1 12
Q ss_pred chhHHHHHHHHcCCCCE
Q 046651 72 DIGICLRVLLECWDVPI 88 (392)
Q Consensus 72 d~gi~~~ll~~~~~iPI 88 (392)
|+ ..+.+++..++++
T Consensus 105 D~--t~eal~~l~~~~l 119 (185)
T 3rfq_A 105 DV--TPESTREILDREI 119 (185)
T ss_dssp CC--HHHHHHTTCSEEC
T ss_pred cc--HHHHHHHHhcccC
Confidence 33 3455555334443
No 107
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=77.81 E-value=4.5 Score=32.01 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=44.9
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+++||||........+-..|.. .|..++...+ .++....+ +...+|.||+--. -|. ...+.++..+-...
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~al~~~-~~~~~dlvl~D~~--l~~-~~g~~~~~~l~~~~ 73 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEF-EGYEVEIAAT----AGEGLAKI-ENEFFNLALFXIK--LPD-MEGTELLEKAHKLR 73 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHSCCSEEEECSB--CSS-SBHHHHHHHHHHHC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHH-CCceEEEeCC----HHHHHHHH-hcCCCCEEEEecC--CCC-CchHHHHHHHHhhC
Confidence 47899999765555566677775 6876553322 34444433 2257999998321 121 12233343333334
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
..+|++-+.
T Consensus 74 ~~~~ii~~s 82 (132)
T 3crn_A 74 PGMKKIMVT 82 (132)
T ss_dssp TTSEEEEEE
T ss_pred CCCcEEEEe
Confidence 578888764
No 108
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=77.12 E-value=8.8 Score=30.98 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=46.5
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhc--------ccCCcCEEEECCCCCCCCCCCchhH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLY--------EENAFDNIVISPGPGSPACPEDIGI 75 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~--------e~~~fDgIVISpGPGsp~~~~d~gi 75 (392)
.++|||||........+.+.|.. .|....|.... +.++....+. ....+|.||+--. -|. ..-+.+
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~-~g~~~~v~~~~--~~~~al~~l~~~~~~~~~~~~~~dliilD~~--l~~-~~g~~~ 77 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRR-AGVNNEIIAFT--DGTSALNYLFGDDKSGRVSAGRAQLVLLDLN--LPD-MTGIDI 77 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHH-TTCCCCEEEES--SHHHHHHHHHCTTSSSGGGTTCBEEEEECSB--CSS-SBHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHh-CCCcceEEEeC--CHHHHHHHHhccccccccccCCCCEEEEeCC--CCC-CcHHHH
Confidence 47999999754555566677776 68743333222 2455555442 2367999999421 111 122344
Q ss_pred HHHHHH--HcCCCCEEEEcH
Q 046651 76 CLRVLL--ECWDVPILGVCL 93 (392)
Q Consensus 76 ~~~ll~--~~~~iPILGVCL 93 (392)
+.++-. ...++||+-+.-
T Consensus 78 ~~~lr~~~~~~~~pii~~t~ 97 (152)
T 3heb_A 78 LKLVKENPHTRRSPVVILTT 97 (152)
T ss_dssp HHHHHHSTTTTTSCEEEEES
T ss_pred HHHHHhcccccCCCEEEEec
Confidence 444433 235889887763
No 109
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=76.48 E-value=15 Score=29.25 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=46.4
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+||||||....+...+.+.|.. .|..+..+. +.++....+.+...+|.||+--. -|.....+.++.. +++
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~-l~~ 75 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNK-YGYTVEIAL----TGEAAVEKVSGGWYPDLILMDIE--LGEGMDGVQTALA-IQQ 75 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----SHHHHHHHHHTTCCCSEEEEESS--CSSSCCHHHHHHH-HHH
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHH-cCCEEEEec----ChHHHHHHHhcCCCCCEEEEecc--CCCCCCHHHHHHH-HHh
Confidence 357999999865566667777776 687665432 24555554533357999998422 1111122333333 344
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
..++||+-+.
T Consensus 76 ~~~~~ii~ls 85 (140)
T 3h5i_A 76 ISELPVVFLT 85 (140)
T ss_dssp HCCCCEEEEE
T ss_pred CCCCCEEEEE
Confidence 3577776554
No 110
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=76.33 E-value=8 Score=30.68 Aligned_cols=82 Identities=12% Similarity=0.148 Sum_probs=48.2
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhccc-CCcCEEEECCCCCCCCCCCchhHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEE-NAFDNIVISPGPGSPACPEDIGICLRVLL- 81 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~-~~fDgIVISpGPGsp~~~~d~gi~~~ll~- 81 (392)
.+||||||........|-+.|....|..++.+. +.++....+ +. ..+|.||+--. -|.....+.++.++-.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~----~~~~a~~~l-~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~~ 76 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVE----NLKKFYSIF-KDLDSITLIIMDIA--FPVEKEGLEVLSAIRNN 76 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEEC----SHHHHHTTT-TTCCCCSEEEECSC--SSSHHHHHHHHHHHHHS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEEC----CHHHHHHHH-hcCCCCcEEEEeCC--CCCCCcHHHHHHHHHhC
Confidence 478999998655555666777664687665332 256666655 34 67999999311 1101112333444433
Q ss_pred -HcCCCCEEEEc
Q 046651 82 -ECWDVPILGVC 92 (392)
Q Consensus 82 -~~~~iPILGVC 92 (392)
...++||+-+.
T Consensus 77 ~~~~~~~ii~ls 88 (140)
T 3lua_A 77 SRTANTPVIIAT 88 (140)
T ss_dssp GGGTTCCEEEEE
T ss_pred cccCCCCEEEEe
Confidence 34689998876
No 111
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=76.30 E-value=4.1 Score=35.58 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=45.9
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..||+||||........+.+.|.. .|..+.... +.++....+ +...+|.||+--. -|. ...+.++..+-..
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~~-~~~~~dlvllD~~--l~~-~~g~~~~~~l~~~ 76 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRL-SGFEVATAV----DGAEALRSA-TENRPDAIVLDIN--MPV-LDGVSVVTALRAM 76 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----SHHHHHHHH-HHSCCSEEEEESS--CSS-SCHHHHHHHHHHT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-CCCEEEEEC----CHHHHHHHH-HhCCCCEEEEeCC--CCC-CCHHHHHHHHHhc
Confidence 358999999865566667777877 687654332 234444433 2357999998422 121 1223333333332
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
..++||+-+.
T Consensus 77 ~~~~~ii~lt 86 (233)
T 1ys7_A 77 DNDVPVCVLS 86 (233)
T ss_dssp TCCCCEEEEE
T ss_pred CCCCCEEEEE
Confidence 4578887654
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=76.02 E-value=4.9 Score=36.51 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=46.9
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+||||||........+.+.|.. .|..+....+- ++....+ +...||.||+--. -|. ..-+.++.++-..
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~a~~~----~eal~~l-~~~~~dlvl~D~~--mp~-~~G~~l~~~ir~~ 198 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGS-LGYQCKTANDG----VDALNVL-SKNHIDIVLSDVN--MPN-MDGYRLTQRIRQL 198 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHH-HTSEEEEECCS----HHHHHHH-HHSCCSEEEEEES--SCS-SCCHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH-cCCEEEEECCH----HHHHHHH-HhCCCCEEEEcCC--CCC-CCHHHHHHHHHhc
Confidence 348999999754455556677766 68876544432 3333333 2257999998311 121 1233444444333
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
...+||+.+.-
T Consensus 199 ~~~~piI~lt~ 209 (254)
T 2ayx_A 199 GLTLPVIGVTA 209 (254)
T ss_dssp HCCSCEEEEES
T ss_pred CCCCcEEEEEC
Confidence 45899998864
No 113
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=75.86 E-value=1.4 Score=35.14 Aligned_cols=80 Identities=9% Similarity=-0.017 Sum_probs=45.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTING-VPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G-~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
+|+||||....+...+-..|.. .| ..++...+ .++....+ +...+|.||+--. -|. ...+.++.++-...
T Consensus 15 ~~ilivdd~~~~~~~l~~~L~~-~g~~~v~~~~~----~~~a~~~l-~~~~~dlvi~D~~--l~~-~~g~~~~~~l~~~~ 85 (135)
T 3snk_A 15 KQVALFSSDPNFKRDVATRLDA-LAIYDVRVSET----DDFLKGPP-ADTRPGIVILDLG--GGD-LLGKPGIVEARALW 85 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHHHH-TSSEEEEEECG----GGGGGCCC-TTCCCSEEEEEEE--TTG-GGGSTTHHHHHGGG
T ss_pred cEEEEEcCCHHHHHHHHHHHhh-cCCeEEEEecc----HHHHHHHH-hccCCCEEEEeCC--CCC-chHHHHHHHHHhhC
Confidence 5899999865556667777776 67 66654432 23444433 3467999998311 111 11233344433334
Q ss_pred CCCCEEEEcH
Q 046651 84 WDVPILGVCL 93 (392)
Q Consensus 84 ~~iPILGVCL 93 (392)
.++||+-+.-
T Consensus 86 ~~~~ii~~s~ 95 (135)
T 3snk_A 86 ATVPLIAVSD 95 (135)
T ss_dssp TTCCEEEEES
T ss_pred CCCcEEEEeC
Confidence 5899987764
No 114
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=74.61 E-value=2.7 Score=36.89 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=37.2
Q ss_pred ccEEEEEE---------CCCCchHHHHHHHHHhCCCCe---EEEeCCCCCHHHH-HhhhcccCCcCEEEECCCCCC
Q 046651 4 FVRTLLID---------NYDSYTYNIYQELSTINGVPP---VVVRNDEWTWRDI-CRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 4 ~~r~LlID---------nyDSyT~nl~q~L~~v~G~~p---vVV~nd~~~~eel-~~~l~e~~~fDgIVISpGPGs 66 (392)
.+|+.||- -+|++.+.|..+|++ .|.++ .+|+.| ....+. ..++ + ..+|.||+|||-|-
T Consensus 7 ~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~-~G~~v~~~~iv~Dd-~~i~~al~~a~-~-~~~DlVittGG~s~ 78 (164)
T 3pzy_A 7 TRSARVIIASTRASSGEYEDRCGPIITEWLAQ-QGFSSAQPEVVADG-SPVGEALRKAI-D-DDVDVILTSGGTGI 78 (164)
T ss_dssp CCEEEEEEECHHHHC----CCHHHHHHHHHHH-TTCEECCCEEECSS-HHHHHHHHHHH-H-TTCSEEEEESCCSS
T ss_pred CCEEEEEEECCCCCCCceeeHHHHHHHHHHHH-CCCEEEEEEEeCCH-HHHHHHHHHHH-h-CCCCEEEECCCCCC
Confidence 46777762 357888889999988 68775 355555 333332 2222 1 36899999988653
No 115
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=74.23 E-value=3.5 Score=35.12 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=46.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+||||||........+...|.. .|..+....+ .++....+ +...+|.||+--. -|. ...+.++.++-...
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~al~~~-~~~~~dlvl~D~~--lp~-~~g~~~~~~l~~~~ 77 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLER-RGYAVRQAHN----KDEALKLA-GAEKFEFITVXLH--LGN-DSGLSLIAPLCDLQ 77 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHH-TTCEEEEECS----HHHHHHHH-TTSCCSEEEECSE--ETT-EESHHHHHHHHHHC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHH-CCCEEEEeCC----HHHHHHHH-hhCCCCEEEEecc--CCC-ccHHHHHHHHHhcC
Confidence 46899999765556667777777 6876543322 34555444 3467999998311 111 12234444444335
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
.++||+-+-
T Consensus 78 ~~~~ii~lt 86 (184)
T 3rqi_A 78 PDARILVLT 86 (184)
T ss_dssp TTCEEEEEE
T ss_pred CCCCEEEEe
Confidence 578887664
No 116
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=72.95 E-value=7.7 Score=30.16 Aligned_cols=79 Identities=11% Similarity=0.132 Sum_probs=44.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
.+++||||........+...|.. .|..+.... +.++....+ +...+|.||+--. -|. ..-+.++ +.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~----~~~~~~~~~-~~~~~dlvi~D~~--l~~-~~g~~~~-~~l~~~ 72 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTM-NGFAVKMHQ----SAEAFLAFA-PDVRNGVLVTDLR--MPD-MSGVELL-RNLGDL 72 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHH-TTCEEEEES----CHHHHHHHG-GGCCSEEEEEECC--STT-SCHHHHH-HHHHHT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHh-CCcEEEEeC----CHHHHHHHH-hcCCCCEEEEECC--CCC-CCHHHHH-HHHHhc
Confidence 46899999865555566677766 687654432 234554444 2356888887321 121 1123333 33444
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
...+||+-+.
T Consensus 73 ~~~~~ii~~s 82 (126)
T 1dbw_A 73 KINIPSIVIT 82 (126)
T ss_dssp TCCCCEEEEE
T ss_pred CCCCCEEEEE
Confidence 3578988774
No 117
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=72.91 E-value=16 Score=34.75 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=58.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCC-------CCCHHHHHhhhc------ccCCcCEEEECCCCCCCCCC
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRND-------EWTWRDICRYLY------EENAFDNIVISPGPGSPACP 70 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd-------~~~~eel~~~l~------e~~~fDgIVISpGPGsp~~~ 70 (392)
.|+|++.|-+=. -..++++|.+....+-.+.--| +.+|+++..++. +...+|.|||. |.
T Consensus 24 ~~~IgvfDSGvG-GLtv~~~i~~~lP~e~~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIA-------CN 95 (274)
T 3uhf_A 24 AMKIGVFDSGVG-GLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIA-------CN 95 (274)
T ss_dssp CCEEEEEESSST-THHHHHHHHHTTCCSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEEC-------CH
T ss_pred CCeEEEEECCCC-hHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-------CC
Confidence 478999996522 2346777776665554444445 567888766553 55688999993 33
Q ss_pred CchhHHHHHHHHcCCCCEEEEc-HHHHHHHHH
Q 046651 71 EDIGICLRVLLECWDVPILGVC-LGHQALGFV 101 (392)
Q Consensus 71 ~d~gi~~~ll~~~~~iPILGVC-LGhQ~La~a 101 (392)
..-....+.|++.-++||+||- -+.+.+...
T Consensus 96 Ta~~~al~~lr~~~~iPvigiiepa~~~a~~~ 127 (274)
T 3uhf_A 96 TASAYALDALRAKAHFPVYGVIDAGVEATIKA 127 (274)
T ss_dssp HHHHHSHHHHHHHCSSCEECSHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhcCCCEEcCCHHHHHHHHHh
Confidence 3333335566664499999987 676666655
No 118
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=72.73 E-value=0.98 Score=40.29 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=29.4
Q ss_pred CcCEEEECCCCCCCCCCCchhHHHHHHHH-c--CCCCEEEEcHHHHHHHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICLRVLLE-C--WDVPILGVCLGHQALGFV 101 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~--~~iPILGVCLGhQ~La~a 101 (392)
.||.|||.||.+.+....+-....++|++ . .+++|-.||-|. +|+.+
T Consensus 73 ~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~l~~a 122 (194)
T 4gdh_A 73 QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT-LTAKT 122 (194)
T ss_dssp HCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG-HHHHH
T ss_pred cCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeecccc-cchhh
Confidence 58999997774433322222335566765 2 378999999987 44443
No 119
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=72.45 E-value=4.6 Score=36.20 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=46.9
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.|||||||........|...|.. .|..+....+ .++....+ +...+|.||+--. -|. ..-+.++.++-...
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~al~~~-~~~~~dlvllD~~--lp~-~~g~~~~~~lr~~~ 93 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKF-QGFEVYTATN----GAQALDRA-RETRPDAVILDVX--MPG-MDGFGVLRRLRADG 93 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHHCCSEEEEESC--CSS-SCHHHHHHHHHHTT
T ss_pred CceEEEEECCHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHH-HhCCCCEEEEeCC--CCC-CCHHHHHHHHHhcC
Confidence 47999999865555667777776 6877654332 34444433 2256999998321 121 12234444433334
Q ss_pred CCCCEEEEcH
Q 046651 84 WDVPILGVCL 93 (392)
Q Consensus 84 ~~iPILGVCL 93 (392)
.++||+-+.-
T Consensus 94 ~~~~ii~lt~ 103 (250)
T 3r0j_A 94 IDAPALFLTA 103 (250)
T ss_dssp CCCCEEEEEC
T ss_pred CCCCEEEEEC
Confidence 5789987764
No 120
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=72.32 E-value=5 Score=31.12 Aligned_cols=79 Identities=10% Similarity=0.132 Sum_probs=43.5
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+|+||||........+-..|.. .|..+.... +.++...++ +...+|.||+--. -|. ...+.++.++-....
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~----~~~~a~~~~-~~~~~dlvl~D~~--l~~-~~g~~~~~~l~~~~~ 74 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNK-EGYQTFQAA----NGLQALDIV-TKERPDLVLLDMK--IPG-MDGIEILKRMKVIDE 74 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT-TTCEEEEES----SHHHHHHHH-HHHCCSEEEEESC--CTT-CCHHHHHHHHHHHCT
T ss_pred ceEEEEeCCHHHHHHHHHHHHH-CCcEEEEeC----CHHHHHHHH-hccCCCEEEEecC--CCC-CCHHHHHHHHHHhCC
Confidence 5899999755455556666665 577654332 234444433 2246899988321 121 112333444433345
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+||+-+.
T Consensus 75 ~~~ii~~s 82 (124)
T 1srr_A 75 NIRVIIMT 82 (124)
T ss_dssp TCEEEEEE
T ss_pred CCCEEEEE
Confidence 88988775
No 121
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=72.08 E-value=5.7 Score=31.25 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=43.6
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+|+||||........+.+.|.. .|..+..+.+ .++....+ +...+|.||+--. -|. ...+.++..+-....
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~a~~~~-~~~~~dlvl~D~~--l~~-~~g~~~~~~l~~~~~ 74 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLER-SGYDVITASD----GEEALKKA-ETEKPDLIVLDVM--LPK-LDGIEVCKQLRQQKL 74 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHHCCSEEEEESS--CSS-SCHHHHHHHHHHTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHH-CCcEEEEecC----HHHHHHHH-hhcCCCEEEEecC--CCC-CCHHHHHHHHHcCCC
Confidence 5899999765555567777776 6876543322 33443333 2246899998422 121 112333333332235
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+||+-+.
T Consensus 75 ~~~ii~~s 82 (136)
T 1mvo_A 75 MFPILMLT 82 (136)
T ss_dssp CCCEEEEE
T ss_pred CCCEEEEE
Confidence 78888775
No 122
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=71.73 E-value=12 Score=29.21 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=43.8
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
+.||+||||........+-+.|.. .|...+..-.+ ..+....+.+...+|.|++--. -|. ..-+.++ +.+++
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~~v~~~~~---~~~a~~~~~~~~~~dlvi~D~~--~p~-~~g~~~~-~~lr~ 75 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSR-LGYEDVLEAEH---GVEAWEKLDANADTKVLITDWN--MPE-MNGLDLV-KKVRS 75 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHH-TTCCCEEEESS---HHHHHHHHHHCTTCCEEEECSC--CSS-SCHHHHH-HHHHT
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHH-cCCcEEEEeCC---HHHHHHHHHhCCCCCEEEEeCC--CCC-CCHHHHH-HHHHh
Confidence 568999999755555566677776 68764333332 2333333322246898888311 121 1223333 33443
Q ss_pred ---cCCCCEEEEc
Q 046651 83 ---CWDVPILGVC 92 (392)
Q Consensus 83 ---~~~iPILGVC 92 (392)
...+||+-+.
T Consensus 76 ~~~~~~~pii~~s 88 (129)
T 3h1g_A 76 DSRFKEIPIIMIT 88 (129)
T ss_dssp STTCTTCCEEEEE
T ss_pred cCCCCCCeEEEEe
Confidence 2478998876
No 123
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=71.52 E-value=2.5 Score=35.27 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=45.7
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC--chhHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE--DIGICLRVL 80 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~--d~gi~~~ll 80 (392)
..|||||||........+-+.|+. .|.+++-.-. +-++...++ +...||.|++ +..-|. -+.++ +.+
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~-~G~~v~~~a~---~g~eAl~~~-~~~~~Dlvll-----Di~mP~~~G~el~-~~l 75 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCE-LGHEVAATAS---RMQEALDIA-RKGQFDIAII-----DVNLDGEPSYPVA-DIL 75 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHH-HCCCCCBCSC---CHHHHHHHH-HHCCSSEEEE-----CSSSSSCCSHHHH-HHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH-CCCEEEEEEC---CHHHHHHHH-HhCCCCEEEE-----ecCCCCCCHHHHH-HHH
Confidence 458999999877777778888877 6987642211 234444433 3478999998 221121 23333 344
Q ss_pred HHcCCCCEEEE
Q 046651 81 LECWDVPILGV 91 (392)
Q Consensus 81 ~~~~~iPILGV 91 (392)
++. ++||+-+
T Consensus 76 r~~-~ipvI~l 85 (123)
T 2lpm_A 76 AER-NVPFIFA 85 (123)
T ss_dssp HHT-CCSSCCB
T ss_pred HcC-CCCEEEE
Confidence 443 7887643
No 124
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=71.17 E-value=8 Score=30.78 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=45.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
.+++||||........+...|.. .|..++... +.++...++ +...+|.||+--. -|. ...+.++.+ |++
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~al~~l-~~~~~dlvi~D~~--l~~-~~g~~~~~~-l~~~ 72 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLER-GGYRPITAF----SGEECLEAL-NATPPDLVLLDIM--MEP-MDGWETLER-IKTD 72 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----SHHHHHHHH-HHSCCSEEEEESC--CSS-SCHHHHHHH-HHHS
T ss_pred cceEEEEeCCHHHHHHHHHHHHH-cCceEEEeC----CHHHHHHHH-hccCCCEEEEeCC--CCC-CCHHHHHHH-HHcC
Confidence 46899999765556667777776 687654332 234444433 2356999998321 111 112333333 443
Q ss_pred --cCCCCEEEEc
Q 046651 83 --CWDVPILGVC 92 (392)
Q Consensus 83 --~~~iPILGVC 92 (392)
...+||+-+.
T Consensus 73 ~~~~~~~ii~ls 84 (138)
T 3c3m_A 73 PATRDIPVLMLT 84 (138)
T ss_dssp TTTTTSCEEEEE
T ss_pred cccCCCCEEEEE
Confidence 2478998775
No 125
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=70.57 E-value=9.1 Score=30.51 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=46.0
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+++||||........+-..|.. .|..+....+ -++....+ +...+|.||+--. -|. ..-+.++.+ +++
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~al~~~-~~~~~dlvl~D~~--lp~-~~g~~~~~~-lr~ 72 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAEMLELVLRG-AGYEVRRAAS----GEEALQQI-YKNLPDALICDVL--LPG-IDGYTLCKR-VRQ 72 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHSCCSEEEEESC--CSS-SCHHHHHHH-HHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH-CCCEEEEeCC----HHHHHHHH-HhCCCCEEEEeCC--CCC-CCHHHHHHH-HHc
Confidence 346899999755555566677766 6876554332 34444433 2367999998311 121 122333333 443
Q ss_pred ---cCCCCEEEEcH
Q 046651 83 ---CWDVPILGVCL 93 (392)
Q Consensus 83 ---~~~iPILGVCL 93 (392)
...+||+-+.-
T Consensus 73 ~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 73 HPLTKTLPILMLTA 86 (136)
T ss_dssp SGGGTTCCEEEEEC
T ss_pred CCCcCCccEEEEec
Confidence 34789987763
No 126
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=70.26 E-value=6.1 Score=31.63 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=42.2
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
++||||........+-+.|.. .|..+..+.+ .++....+ +...+|.||+--. -|. ...+.++.+ |++ ..
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~a~~~l-~~~~~dlvllD~~--l~~-~~g~~l~~~-l~~~~~ 75 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKD-EPYDIFHVET----GRDAIQFI-ERSKPQLIILDLK--LPD-MSGEDVLDW-INQNDI 75 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTT-SSSEEEEESS----HHHHHHHH-HHHCCSEEEECSB--CSS-SBHHHHHHH-HHHTTC
T ss_pred eEEEEeCCHHHHHHHHHHHHh-cCceEEEeCC----HHHHHHHH-HhcCCCEEEEecC--CCC-CCHHHHHHH-HHhcCC
Confidence 799999866666566666654 5766543322 34444433 2256899998321 121 112333333 444 35
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+||+-+.
T Consensus 76 ~~~ii~ls 83 (137)
T 3cfy_A 76 PTSVIIAT 83 (137)
T ss_dssp CCEEEEEE
T ss_pred CCCEEEEE
Confidence 78887764
No 127
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=69.70 E-value=7.3 Score=34.04 Aligned_cols=83 Identities=18% Similarity=0.120 Sum_probs=46.5
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCC-CeEEEeCCCCCHHHHHhhhccc------------CCcCEEEECCCCCCCCC
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGV-PPVVVRNDEWTWRDICRYLYEE------------NAFDNIVISPGPGSPAC 69 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~-~pvVV~nd~~~~eel~~~l~e~------------~~fDgIVISpGPGsp~~ 69 (392)
..+||||||........+.+.|.. .|. .+..+.+ .++...++-+. ..||.||+--. -|.
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~-~g~~~v~~a~~----~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~- 131 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKK-MGVSEVEQCDS----GKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPE- 131 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHH-TTCSEEEEESS----HHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSS-
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH-cCCCeeeeeCC----HHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCC-
Confidence 347999999765555567777776 687 4443322 34444444221 36999998311 111
Q ss_pred CCchhHHHHHHHH----cCCCCEEEEcH
Q 046651 70 PEDIGICLRVLLE----CWDVPILGVCL 93 (392)
Q Consensus 70 ~~d~gi~~~ll~~----~~~iPILGVCL 93 (392)
..-+.++.++-.. ..++||+-+.-
T Consensus 132 ~~G~el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 132 MDGYEATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp SCHHHHHHHHHHHHHTTTCCCCEEEEES
T ss_pred CCHHHHHHHHHhhhhhcCCCCcEEEEEC
Confidence 1223334333332 25899998875
No 128
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=69.53 E-value=19 Score=31.07 Aligned_cols=36 Identities=14% Similarity=0.021 Sum_probs=24.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHh---CCCCeEEEeCCC
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTI---NGVPPVVVRNDE 39 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v---~G~~pvVV~nd~ 39 (392)
.||||+|-...++|..+.+.+.+. .|.+++++.-.+
T Consensus 4 mmkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 4 KPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CcEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhH
Confidence 478998866555677777776553 377877775443
No 129
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=69.47 E-value=5.8 Score=34.59 Aligned_cols=60 Identities=22% Similarity=0.143 Sum_probs=37.2
Q ss_pred ccEEEEEECC--------------CCchHHHHHHHHHhCCCCeEEE--eCCCCCHHHHHhhh---cccCCcCEEEECCCC
Q 046651 4 FVRTLLIDNY--------------DSYTYNIYQELSTINGVPPVVV--RNDEWTWRDICRYL---YEENAFDNIVISPGP 64 (392)
Q Consensus 4 ~~r~LlIDny--------------DSyT~nl~q~L~~v~G~~pvVV--~nd~~~~eel~~~l---~e~~~fDgIVISpGP 64 (392)
.+|+.||--. |+...-|.++|.+ .|++++.. -.|+ .+++...+ .....+|.||.+||-
T Consensus 15 ~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~-~G~~v~~~~iV~Dd--~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIE-NGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHH-TTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHH-CCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 4788888433 4445568888988 79887432 2333 23343322 233568999999986
Q ss_pred CC
Q 046651 65 GS 66 (392)
Q Consensus 65 Gs 66 (392)
|-
T Consensus 92 g~ 93 (178)
T 3iwt_A 92 GY 93 (178)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 130
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=69.36 E-value=6.6 Score=31.43 Aligned_cols=82 Identities=11% Similarity=0.045 Sum_probs=46.9
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHhhhccc-CCcCEEEECCCCCCCCCCCchhHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTING-VPPVVVRNDEWTWRDICRYLYEE-NAFDNIVISPGPGSPACPEDIGICLRVLL 81 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G-~~pvVV~nd~~~~eel~~~l~e~-~~fDgIVISpGPGsp~~~~d~gi~~~ll~ 81 (392)
..||||||........|.+.|.. .| ..++...+. .+....+.+. ..+|.||+--. -|. ...+.++.++-.
T Consensus 20 ~~~ilivdd~~~~~~~l~~~L~~-~g~~~v~~~~~~----~~~~~~~~~~~~~~dlvi~D~~--l~~-~~g~~~~~~l~~ 91 (146)
T 4dad_A 20 MINILVASEDASRLAHLARLVGD-AGRYRVTRTVGR----AAQIVQRTDGLDAFDILMIDGA--ALD-TAELAAIEKLSR 91 (146)
T ss_dssp GCEEEEECSCHHHHHHHHHHHHH-HCSCEEEEECCC----HHHHTTCHHHHTTCSEEEEECT--TCC-HHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHhh-CCCeEEEEeCCH----HHHHHHHHhcCCCCCEEEEeCC--CCC-ccHHHHHHHHHH
Confidence 47999999865566667777877 46 666554322 2222223333 57999999422 111 112333444433
Q ss_pred HcCCCCEEEEcH
Q 046651 82 ECWDVPILGVCL 93 (392)
Q Consensus 82 ~~~~iPILGVCL 93 (392)
....+||+-+.-
T Consensus 92 ~~~~~~ii~lt~ 103 (146)
T 4dad_A 92 LHPGLTCLLVTT 103 (146)
T ss_dssp HCTTCEEEEEES
T ss_pred hCCCCcEEEEeC
Confidence 355889887763
No 131
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=69.17 E-value=5.9 Score=34.14 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=30.7
Q ss_pred cEEEEEECC-CCchHHHHHHHHHhCCCC-eEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTINGVP-PVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v~G~~-pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
||++||=.- -.+|..+++.|++.++.. +.++.-++...+++ ..+|.|||
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~~v~i~~~~~~~~~~l-------~~~d~ii~ 51 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDL-------EAYDILLL 51 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEEGGGCCHHHH-------HTCSEEEE
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccCceEEEEcccCChhHh-------hhCCEEEE
Confidence 788888321 123566889988876653 44555444334454 35999999
No 132
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=69.06 E-value=5.9 Score=32.13 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=44.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+||||||........+.+.|. .|..+..+. +.++....+.+...||.||+--.- |. ...+.++.++-...
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~--~~~~v~~~~----~~~~a~~~l~~~~~~dlvi~D~~l--~~-~~g~~~~~~l~~~~ 74 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLS--FDFEVTTCE----SGPEALACIKKSDPFSVIMVDMRM--PG-MEGTEVIQKARLIS 74 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHT--TTSEEEEES----SHHHHHHHHHHSCCCSEEEEESCC--SS-SCHHHHHHHHHHHC
T ss_pred CCeEEEEeCCHHHHHHHHHHhc--cCceEEEeC----CHHHHHHHHHcCCCCCEEEEeCCC--CC-CcHHHHHHHHHhcC
Confidence 4689999975444445556564 365554332 245555544333347999984221 11 12234444443345
Q ss_pred CCCCEEEEcH
Q 046651 84 WDVPILGVCL 93 (392)
Q Consensus 84 ~~iPILGVCL 93 (392)
..+||+-+.-
T Consensus 75 ~~~~ii~~s~ 84 (151)
T 3kcn_A 75 PNSVYLMLTG 84 (151)
T ss_dssp SSCEEEEEEC
T ss_pred CCcEEEEEEC
Confidence 6889887764
No 133
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=69.00 E-value=4 Score=35.57 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=36.6
Q ss_pred ccEEEEEECC---CCchHHHHHHHHHhC--CCCeEEEeCCCC--------------CHHHHHhhhcccCCcCEEEECCCC
Q 046651 4 FVRTLLIDNY---DSYTYNIYQELSTIN--GVPPVVVRNDEW--------------TWRDICRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 4 ~~r~LlIDny---DSyT~nl~q~L~~v~--G~~pvVV~nd~~--------------~~eel~~~l~e~~~fDgIVISpGP 64 (392)
.||||+|.-. +|+|..+.+.+.+.. |.++.++.-.+. ..+++...+ .++|+|||
T Consensus 6 ~Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l---~~aD~ii~---- 78 (193)
T 1rtt_A 6 DIKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQI---RAADALLF---- 78 (193)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHH---HHCSEEEE----
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHH---HhCCEEEE----
Confidence 4789999765 378888999987754 556665543321 122333333 56899999
Q ss_pred CCCC
Q 046651 65 GSPA 68 (392)
Q Consensus 65 Gsp~ 68 (392)
|+|.
T Consensus 79 ~sP~ 82 (193)
T 1rtt_A 79 ATPE 82 (193)
T ss_dssp ECCE
T ss_pred Eccc
Confidence 5664
No 134
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=68.64 E-value=1.6 Score=34.95 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=45.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-CCchhHHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-PEDIGICLRVLLE 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~~d~gi~~~ll~~ 82 (392)
.+|+||||........+.+.|.. .|..++... +.++....+ +...+|.||+--. -|.. ...+.++.++-..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dlvi~D~~--l~~~~~~g~~~~~~l~~~ 77 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSP-LDVTIQCFA----SAESFMRQQ-ISDDAIGMIIEAH--LEDKKDSGIELLETLVKR 77 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTT-SSSEEEEES----SHHHHTTSC-CCTTEEEEEEETT--GGGBTTHHHHHHHHHHHT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHH-CCcEEEEeC----CHHHHHHHH-hccCCCEEEEeCc--CCCCCccHHHHHHHHHhC
Confidence 46899999755555556666665 577654332 245665544 4467999998321 1110 1123333333333
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
..++||+-+.-
T Consensus 78 ~~~~~ii~~s~ 88 (136)
T 3kto_A 78 GFHLPTIVMAS 88 (136)
T ss_dssp TCCCCEEEEES
T ss_pred CCCCCEEEEEc
Confidence 45889987753
No 135
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=68.22 E-value=5.5 Score=37.04 Aligned_cols=64 Identities=17% Similarity=0.092 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCCeEEEeCC-----CC-CHHHHHhhhcccCCcCEEEECCCCCCCCC------------CCchhHHHHH
Q 046651 18 YNIYQELSTINGVPPVVVRND-----EW-TWRDICRYLYEENAFDNIVISPGPGSPAC------------PEDIGICLRV 79 (392)
Q Consensus 18 ~nl~q~L~~v~G~~pvVV~nd-----~~-~~eel~~~l~e~~~fDgIVISpGPGsp~~------------~~d~gi~~~l 79 (392)
..|.++|+. +|++++++..+ -+ +.+++ .+||.||++.-+.+.-. +.....+.+.
T Consensus 43 ~~l~~aL~~-~~~~v~~~~~~~~~~~fp~~~~~L-------~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 114 (256)
T 2gk3_A 43 TWLLECLRK-GGVDIDYMPAHTVQIAFPESIDEL-------NRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEY 114 (256)
T ss_dssp HHHHHHHHH-TTCEEEEECHHHHHHCCCCSHHHH-------HTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHh-cCceEEEEecccchhhCCcChhHH-------hcCCEEEEeCCchhhcccccccccccccChHHHHHHHHH
Confidence 368889988 69999887422 11 23444 46999999754432100 2223334444
Q ss_pred HHHcCCCCEEEE
Q 046651 80 LLECWDVPILGV 91 (392)
Q Consensus 80 l~~~~~iPILGV 91 (392)
++ .+..+++|
T Consensus 115 V~--~GGgll~i 124 (256)
T 2gk3_A 115 VK--NGGGLLMI 124 (256)
T ss_dssp HH--TTCEEEEE
T ss_pred HH--hCCEEEEE
Confidence 44 37888888
No 136
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=68.13 E-value=3.7 Score=36.43 Aligned_cols=49 Identities=24% Similarity=0.186 Sum_probs=30.0
Q ss_pred CCchHHHHHHHHHhCCCCeEEE--eCCCCCHHHHHhhhc---ccCCcCEEEECCCCC
Q 046651 14 DSYTYNIYQELSTINGVPPVVV--RNDEWTWRDICRYLY---EENAFDNIVISPGPG 65 (392)
Q Consensus 14 DSyT~nl~q~L~~v~G~~pvVV--~nd~~~~eel~~~l~---e~~~fDgIVISpGPG 65 (392)
|++.+.|..+|.+ .|.+++.. -.|+ .+++...|- +...+|.||++||-|
T Consensus 39 Dsn~~~L~~~l~~-~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVittGG~s 92 (178)
T 2pjk_A 39 DESGDIIKQLLIE-NGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp CHHHHHHHHHHHH-TTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred ehHHHHHHHHHHH-CCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 5566778888888 79876532 2333 333333332 212389999998865
No 137
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=67.99 E-value=4.2 Score=35.74 Aligned_cols=71 Identities=10% Similarity=0.068 Sum_probs=42.4
Q ss_pred cEEEEEECC---CCchHHHHHHHHHh----CCCCeEEEeCCCCC-------------HHHHHhhhcccCCcCEEEECCCC
Q 046651 5 VRTLLIDNY---DSYTYNIYQELSTI----NGVPPVVVRNDEWT-------------WRDICRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 5 ~r~LlIDny---DSyT~nl~q~L~~v----~G~~pvVV~nd~~~-------------~eel~~~l~e~~~fDgIVISpGP 64 (392)
|+|++|--. .|+|..+.+.+.+. .|.++.++.-.+.. .+++...+ ..+|+|||
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i---~~aD~ii~---- 75 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDAT---CNADGLIV---- 75 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHH---HHCSEEEE----
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHH---HHCCEEEE----
Confidence 578888765 47888888887654 37777777654332 22222323 46899999
Q ss_pred CCCCCCCc-hhHHHHHHHH
Q 046651 65 GSPACPED-IGICLRVLLE 82 (392)
Q Consensus 65 Gsp~~~~d-~gi~~~ll~~ 82 (392)
|+|.-... .+....+|..
T Consensus 76 ~sP~y~~~~p~~lK~~ld~ 94 (197)
T 2vzf_A 76 ATPIYKASYTGLLKAFLDI 94 (197)
T ss_dssp EEECBTTBCCHHHHHHHTT
T ss_pred EeCccCCCCCHHHHHHHHh
Confidence 56643222 2444555543
No 138
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=67.64 E-value=5.1 Score=36.38 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=24.9
Q ss_pred cEEEEEECC---CCchHHHHHHHHHhC----CCCeEEEeC
Q 046651 5 VRTLLIDNY---DSYTYNIYQELSTIN----GVPPVVVRN 37 (392)
Q Consensus 5 ~r~LlIDny---DSyT~nl~q~L~~v~----G~~pvVV~n 37 (392)
|+||+|... +|+|..|.+.+.+.. |.+++++.-
T Consensus 2 mkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl 41 (242)
T 1sqs_A 2 NKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTP 41 (242)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 689999765 378888888876654 888877753
No 139
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=67.42 E-value=8.1 Score=30.17 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=44.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
.|+||||........+...|.. .|..++... +.++....+ +...+|.||+--. -|. ...+.++. .+++
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~-~g~~v~~~~----~~~~al~~l-~~~~~dlvllD~~--~p~-~~g~~~~~-~l~~~~ 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKK-EGYEVIEAE----NGQIALEKL-SEFTPDLIVLXIM--MPV-MDGFTVLK-KLQEKE 72 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----SHHHHHHHH-TTBCCSEEEECSC--CSS-SCHHHHHH-HHHTST
T ss_pred ceEEEEeCCHHHHHHHHHHHHH-CCcEEEEeC----CHHHHHHHH-HhcCCCEEEEecc--CCC-CcHHHHHH-HHHhcc
Confidence 4899999754445556666766 687665432 245555544 3467999998321 121 12233333 3443
Q ss_pred -cCCCCEEEEc
Q 046651 83 -CWDVPILGVC 92 (392)
Q Consensus 83 -~~~iPILGVC 92 (392)
..++||+-+.
T Consensus 73 ~~~~~pii~~s 83 (122)
T 3gl9_A 73 EWKRIPVIVLT 83 (122)
T ss_dssp TTTTSCEEEEE
T ss_pred cccCCCEEEEe
Confidence 2478998776
No 140
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=67.34 E-value=6.5 Score=32.98 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=43.2
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC--chhHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE--DIGICLRVLL 81 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~--d~gi~~~ll~ 81 (392)
.|||||||.....-.-+-+.|+. .|...+..-.+- ++....+ +...||.|++ +-.-|. -+..+ +.|+
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~-~G~~~v~~a~~g---~~al~~~-~~~~~Dlill-----D~~MP~mdG~el~-~~ir 80 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRD-LGFNNTQEADDG---LTALPML-KKGDFDFVVT-----DWNMPGMQGIDLL-KNIR 80 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHH-TTCCCEEEESSH---HHHHHHH-HHHCCSEEEE-----ESCCSSSCHHHHH-HHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH-cCCcEEEEECCH---HHHHHHH-HhCCCCEEEE-----cCCCCCCCHHHHH-HHHH
Confidence 47999999644444456666666 798754332222 2333222 2367999998 221122 23333 3444
Q ss_pred H---cCCCCEEEEc
Q 046651 82 E---CWDVPILGVC 92 (392)
Q Consensus 82 ~---~~~iPILGVC 92 (392)
. ..++||+-+-
T Consensus 81 ~~~~~~~ipvI~lT 94 (134)
T 3to5_A 81 ADEELKHLPVLMIT 94 (134)
T ss_dssp HSTTTTTCCEEEEE
T ss_pred hCCCCCCCeEEEEE
Confidence 3 3589998775
No 141
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=67.03 E-value=8.1 Score=30.69 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=32.4
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
.||+||||........+.+.|....|...+..-.+ .++....+ +...+|.||+-
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~---~~~al~~l-~~~~~dlvi~d 62 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDD---GLDVLKFL-QHNKVDAIFLD 62 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESC---HHHHHHHH-HHCCCSEEEEC
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCC---HHHHHHHH-HhCCCCEEEEe
Confidence 47899999865556667777776445553322222 34444433 22569999984
No 142
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=66.83 E-value=11 Score=29.20 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=44.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
.|+||||........+-..|.. .|..+.... +.++....+ +...+|.|++--. -|. ..-+.++ +.+++..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~al~~~-~~~~~dlii~D~~--~p~-~~g~~~~-~~lr~~~ 72 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRK-EGYEVHCAH----DGNEAVEMV-EELQPDLILLDIM--LPN-KDGVEVC-REVRKKY 72 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----SHHHHHHHH-HTTCCSEEEEETT--STT-THHHHHH-HHHHTTC
T ss_pred CeEEEEECCHHHHHHHHHHHHh-CCEEEEEeC----CHHHHHHHH-hhCCCCEEEEeCC--CCC-CCHHHHH-HHHHhcC
Confidence 4899999754455556666766 687665432 234554443 3367999998321 121 1122333 3344444
Q ss_pred CCCEEEEcH
Q 046651 85 DVPILGVCL 93 (392)
Q Consensus 85 ~iPILGVCL 93 (392)
++||+-+.-
T Consensus 73 ~~~ii~~t~ 81 (120)
T 3f6p_A 73 DMPIIMLTA 81 (120)
T ss_dssp CSCEEEEEE
T ss_pred CCCEEEEEC
Confidence 889887753
No 143
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=66.49 E-value=4.4 Score=35.62 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=36.6
Q ss_pred CccEEEEEEC-------CCCchHHHHHHHHHhCCCCeE---EEeCCCCCHHHHHhhhc---ccCCcCEEEECCCCC
Q 046651 3 EFVRTLLIDN-------YDSYTYNIYQELSTINGVPPV---VVRNDEWTWRDICRYLY---EENAFDNIVISPGPG 65 (392)
Q Consensus 3 ~~~r~LlIDn-------yDSyT~nl~q~L~~v~G~~pv---VV~nd~~~~eel~~~l~---e~~~fDgIVISpGPG 65 (392)
..||+.||-- +|++.+-|.+.|.+ .|.+++ +|+ |+ .+++...|- +...+|.||++||-|
T Consensus 9 ~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~-~G~~v~~~~iv~-Dd--~~~i~~~l~~a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 9 IPTRIAILTVSNRRGEEDDTSGHYLRDSAQE-AGHHVVDKAIVK-EN--RYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp CCCEEEEEEECSSCCGGGCHHHHHHHHHHHH-TTCEEEEEEEEC-SC--HHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred CCCEEEEEEEeCCCCcccCccHHHHHHHHHH-CCCeEeEEEEeC-CC--HHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 3478877754 45566678888888 798764 344 33 233333332 212489999998865
No 144
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=66.45 E-value=5.1 Score=34.99 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=36.3
Q ss_pred ccEEEEEEC-------CCCchHHHHHHHHHhCCCCeE---EEeCCCCCHHHHHhhhccc-C--CcCEEEECCCCC
Q 046651 4 FVRTLLIDN-------YDSYTYNIYQELSTINGVPPV---VVRNDEWTWRDICRYLYEE-N--AFDNIVISPGPG 65 (392)
Q Consensus 4 ~~r~LlIDn-------yDSyT~nl~q~L~~v~G~~pv---VV~nd~~~~eel~~~l~e~-~--~fDgIVISpGPG 65 (392)
.||+.||-- +|++.+-|..+|.+ .|.+++ +|+ |+ .+++...|-+. . .+|.||++||-|
T Consensus 13 ~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~-~G~~v~~~~iv~-Dd--~~~i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 13 EVRCKIVTISDTRTEETDKSGQLLHELLKE-AGHKVTSYEIVK-DD--KESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp CCEEEEEEECSSCCTTTCHHHHHHHHHHHH-HTCEEEEEEEEC-SS--HHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred CCEEEEEEEcCccCeeccChHHHHHHHHHH-CCCeEeEEEEeC-CC--HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 477777743 46667778899988 588764 333 33 23333332211 3 689999998865
No 145
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=66.38 E-value=6.3 Score=35.60 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=36.1
Q ss_pred CccEEEEEE---------CCCCchHHHHHHHHHhCCCC--e---EEEeCCCCCHHHHHhhhcccCCcCEEEECCCCC
Q 046651 3 EFVRTLLID---------NYDSYTYNIYQELSTINGVP--P---VVVRNDEWTWRDICRYLYEENAFDNIVISPGPG 65 (392)
Q Consensus 3 ~~~r~LlID---------nyDSyT~nl~q~L~~v~G~~--p---vVV~nd~~~~eel~~~l~e~~~fDgIVISpGPG 65 (392)
..||+.||- -+|++.+-|..+|.+ .|.+ + .+|+.|.....+......+...+|.||.+||-|
T Consensus 2 ~~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~-~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg 77 (195)
T 1di6_A 2 ATLRIGLVSISDRASSGVYQDKGIPALEEWLTS-ALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTG 77 (195)
T ss_dssp CCEEEEEEEEECC-------CCHHHHHHHHHHH-HBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCCEEEEEEECCCCCCCeEEchHHHHHHHHHHH-cCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 356777663 257777889999988 5766 2 345544322222222222222689999999876
No 146
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=66.19 E-value=4.5 Score=37.93 Aligned_cols=64 Identities=13% Similarity=0.207 Sum_probs=39.2
Q ss_pred cEEEEEECCCCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL 81 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~ 81 (392)
||++||-|.+.-...+.+.+.+. .|.++ + ...+|.||.-||-|+. ++..+
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v-----~-------------~~~~D~vv~lGGDGT~---------l~aa~ 53 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEY-----D-------------DVEPEIVISIGGDGTF---------LSAFH 53 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEE-----C-------------SSSCSEEEEEESHHHH---------HHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEe-----C-------------CCCCCEEEEEcCcHHH---------HHHHH
Confidence 89999998432223333333222 45543 1 1458999999998763 33333
Q ss_pred Hc----CCCCEEEEcHHH
Q 046651 82 EC----WDVPILGVCLGH 95 (392)
Q Consensus 82 ~~----~~iPILGVCLGh 95 (392)
.. .++|+|||=.|+
T Consensus 54 ~~~~~~~~~PilGIn~G~ 71 (272)
T 2i2c_A 54 QYEERLDEIAFIGIHTGH 71 (272)
T ss_dssp HTGGGTTTCEEEEEESSS
T ss_pred HHhhcCCCCCEEEEeCCC
Confidence 32 389999998774
No 147
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=65.86 E-value=13 Score=29.35 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=46.9
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcc-------c--CCcCEEEECCCCCCCCCCCch
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYE-------E--NAFDNIVISPGPGSPACPEDI 73 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e-------~--~~fDgIVISpGPGsp~~~~d~ 73 (392)
..+++||||........+.+.|.. .|....|.... +.++....+.+ . ..+|.||+--.- |. ...+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~~~v~~~~--~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l--~~-~~g~ 78 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQR-EGVVNPIYRCI--TGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL--PG-TDGR 78 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHH-TTBCSCEEEEC--SHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC--SS-SCHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHH-cCCCceEEEEC--CHHHHHHHHHhcccccCcccCCCCcEEEEECCC--CC-CCHH
Confidence 357899999865556667777776 67632222222 24566555532 1 568999994221 11 1123
Q ss_pred hHHHHHHHH-c--CCCCEEEEcH
Q 046651 74 GICLRVLLE-C--WDVPILGVCL 93 (392)
Q Consensus 74 gi~~~ll~~-~--~~iPILGVCL 93 (392)
.++ +.+++ . ..+||+-+.-
T Consensus 79 ~~~-~~l~~~~~~~~~~ii~~t~ 100 (149)
T 1k66_A 79 EVL-QEIKQDEVLKKIPVVIMTT 100 (149)
T ss_dssp HHH-HHHTTSTTGGGSCEEEEES
T ss_pred HHH-HHHHhCcccCCCeEEEEeC
Confidence 333 33333 2 4789988763
No 148
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=65.82 E-value=25 Score=30.33 Aligned_cols=67 Identities=19% Similarity=0.133 Sum_probs=41.2
Q ss_pred cEEEEEECC-CCchHHHHHHHHHh----CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc-hhHHHH
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTI----NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED-IGICLR 78 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v----~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d-~gi~~~ 78 (392)
|+++||-.. .++|..+.+.+++. .|+++.++.-.+.+.+++.. +|+||| |+|.-... .+....
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~-------aD~ii~----gsP~y~g~~~~~lk~ 73 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLW-------ADGLAV----GSPTNMGLVSWKMKR 73 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHH-------CSEEEE----EEECBTTBCCHHHHH
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHh-------CCEEEE----EeCccCCcCCHHHHH
Confidence 578888432 34566777777654 46677777776655666644 899999 56654222 233445
Q ss_pred HHHH
Q 046651 79 VLLE 82 (392)
Q Consensus 79 ll~~ 82 (392)
++..
T Consensus 74 fld~ 77 (188)
T 2ark_A 74 FFDD 77 (188)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 149
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=65.81 E-value=12 Score=34.34 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=37.2
Q ss_pred ccEEEEEECCCCc--------hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECC
Q 046651 4 FVRTLLIDNYDSY--------TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISP 62 (392)
Q Consensus 4 ~~r~LlIDnyDSy--------T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISp 62 (392)
.||++||-...|. ...+.+.+.+ .|.+++++..++..|+.+.. ..+|.|+...
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~-~G~~v~~~~~~~~~~~~~~~-----~~~d~v~~~~ 62 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLRE-GGIDAYPVDPKEVDVTQLKS-----MGFQKVFIAL 62 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEECTTTSCGGGTTT-----TTEEEEEECC
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHH-CCCeEEEEecCchHHHHhhc-----cCCCEEEEcC
Confidence 3789999876652 2467888887 79999988777655554432 5689887753
No 150
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=65.75 E-value=7.8 Score=29.68 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=43.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+++||||........+-..|.. .|..++..-.+ .++...++ +...+|.|++--. -|. ...+.++.++-+...
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~-~g~~vv~~~~~---~~~a~~~~-~~~~~dlil~D~~--l~~-~~g~~~~~~l~~~~~ 74 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITK-AGYEVAGEATN---GREAVEKY-KELKPDIVTMDIT--MPE-MNGIDAIKEIMKIDP 74 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEEESS---HHHHHHHH-HHHCCSEEEEECS--CGG-GCHHHHHHHHHHHCT
T ss_pred ceEEEEcCcHHHHHHHHHHHhh-cCcEEEEEECC---HHHHHHHH-HhcCCCEEEEeCC--CCC-CcHHHHHHHHHhhCC
Confidence 6899999754455566677765 68764322222 34444433 2246899988421 111 112333444333345
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+|++-+.
T Consensus 75 ~~~ii~~s 82 (120)
T 1tmy_A 75 NAKIIVCS 82 (120)
T ss_dssp TCCEEEEE
T ss_pred CCeEEEEe
Confidence 78887764
No 151
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=65.62 E-value=8.3 Score=30.52 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=46.4
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCC--CeEEEeCCCCCHHHHHhhhcc-----cCCcCEEEECCCCCCCCCCCchhHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGV--PPVVVRNDEWTWRDICRYLYE-----ENAFDNIVISPGPGSPACPEDIGIC 76 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~--~pvVV~nd~~~~eel~~~l~e-----~~~fDgIVISpGPGsp~~~~d~gi~ 76 (392)
.+|+||||........+.+.|.. .|. .+..+. +.++....+.+ ...+|.||+--. -|. ...+.++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~-~g~~~~v~~~~----~~~~a~~~l~~~~~~~~~~~dlii~D~~--l~~-~~g~~~~ 78 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHK-ISSLIKIEIAK----SGNQALDMLYGRNKENKIHPKLILLDIN--IPK-MNGIEFL 78 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHH-HCTTCCEEEES----SHHHHHHHHHTCTTCCCCCCSEEEEETT--CTT-SCHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH-hCCCceEEEEC----CHHHHHHHHHhcccccCCCCCEEEEecC--CCC-CCHHHHH
Confidence 36899999865566677777877 476 444332 24555555532 146999999422 111 1123333
Q ss_pred HHHHHHc---CCCCEEEEcH
Q 046651 77 LRVLLEC---WDVPILGVCL 93 (392)
Q Consensus 77 ~~ll~~~---~~iPILGVCL 93 (392)
+.+++. ..+||+-+.-
T Consensus 79 -~~l~~~~~~~~~~ii~ls~ 97 (143)
T 2qvg_A 79 -KELRDDSSFTDIEVFVLTA 97 (143)
T ss_dssp -HHHTTSGGGTTCEEEEEES
T ss_pred -HHHHcCccccCCcEEEEeC
Confidence 333332 5789888764
No 152
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=64.40 E-value=18 Score=28.38 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=45.1
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhccc-CCcCEEEECCCCCCCCCCCchhHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEE-NAFDNIVISPGPGSPACPEDIGICLRVLL 81 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~-~~fDgIVISpGPGsp~~~~d~gi~~~ll~ 81 (392)
..+++||||........+.+.|.. .|..+..+. +.++....+ +. ..+|.||+--.- |. ...+.++ +.++
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~al~~l-~~~~~~dlvilD~~l--~~-~~g~~~~-~~l~ 83 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQ-LGAEVTVHP----SGSAFFQHR-SQLSTCDLLIVSDQL--VD-LSIFSLL-DIVK 83 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----SHHHHHHTG-GGGGSCSEEEEETTC--TT-SCHHHHH-HHHT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHH-cCCEEEEeC----CHHHHHHHH-HhCCCCCEEEEeCCC--CC-CCHHHHH-HHHH
Confidence 458999999865556667777776 587554332 245655544 33 469999984221 11 1122222 3333
Q ss_pred H-cCCCCEEEEc
Q 046651 82 E-CWDVPILGVC 92 (392)
Q Consensus 82 ~-~~~iPILGVC 92 (392)
+ ...+||+-+.
T Consensus 84 ~~~~~~~ii~ls 95 (138)
T 2b4a_A 84 EQTKQPSVLILT 95 (138)
T ss_dssp TSSSCCEEEEEE
T ss_pred hhCCCCCEEEEE
Confidence 3 3467877665
No 153
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=64.28 E-value=10 Score=29.03 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=43.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+++||||........+.+.|.. .|..+....+ .++...++ +...+|.||+--. -|.. ..+.++ +.+++..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~----~~~~~~~~-~~~~~dlvi~d~~--l~~~-~g~~~~-~~l~~~~ 72 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQ-EGYTVSVTAS----GAGLREIM-QNQSVDLILLDIN--LPDE-NGLMLT-RALRERS 72 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHSCCSEEEEESC--CSSS-CHHHHH-HHHHTTC
T ss_pred cEEEEEECCHHHHHHHHHHHHH-CCCeEEEecC----HHHHHHHH-hcCCCCEEEEeCC--CCCC-ChHHHH-HHHHhcC
Confidence 5899999865556667777766 6876544322 34444333 2356999988421 1211 122333 3344445
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+|++-+.
T Consensus 73 ~~~ii~~s 80 (122)
T 1zgz_A 73 TVGIILVT 80 (122)
T ss_dssp CCEEEEEE
T ss_pred CCCEEEEE
Confidence 78887664
No 154
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=64.22 E-value=5.4 Score=33.85 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=32.0
Q ss_pred cEEEEEECCCCc---hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDNYDSY---TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDnyDSy---T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
|+++|+ |.|. |..+++.|++.+|. +.++.-++.+.+++ ..+|.|||
T Consensus 2 ~k~~I~--Y~S~tGnT~~~A~~ia~~lg~-~~~~~~~~~~~~~l-------~~~d~ii~ 50 (164)
T 2bmv_A 2 GKIGIF--FGTDSGNAEAIAEKISKAIGN-AEVVDVAKASKEQF-------NSFTKVIL 50 (164)
T ss_dssp CCEEEE--ECCSSSHHHHHHHHHHHHHCS-EEEEEGGGCCHHHH-------TTCSEEEE
T ss_pred CeEEEE--EECCCchHHHHHHHHHHHcCC-cEEEecccCCHhHH-------hhCCEEEE
Confidence 467776 4454 56699999887787 66666555444554 45999999
No 155
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=63.93 E-value=5.3 Score=33.87 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=31.0
Q ss_pred cEEEEEECC-CCchHHHHHHHHHhCCCC--eEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTINGVP--PVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v~G~~--pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
||++||=.- -++|..+++.|++.++.. +.++.-++.+.+++ ..+|.|||
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~~~v~~~~~~~~~~~~l-------~~~d~ii~ 52 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIANADASDL-------NAYDYLII 52 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTSTTTEEEEEGGGCCGGGG-------GGCSEEEE
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcccceEEEEhhhCCHhHH-------hhCCEEEE
Confidence 577777321 124666899998876654 66665544333444 45999999
No 156
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=63.83 E-value=11 Score=33.29 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=44.2
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+|+||||........|.+.|.. .|..+..+.+- ++....+ +...+|.||+--. -|. ...+.++ +.+++..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~~~----~~al~~l-~~~~~dlvilD~~--l~~-~~g~~~~-~~lr~~~ 75 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRG-EGFDTAVIGDG----TQALTAV-RELRPDLVLLDLM--LPG-MNGIDVC-RVLRADS 75 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEECCG----GGHHHHH-HHHCCSEEEEESS--CSS-SCHHHHH-HHHHTTC
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-CCCEEEEECCH----HHHHHHH-HhCCCCEEEEeCC--CCC-CCHHHHH-HHHHhCC
Confidence 5899999765556667777776 68876544332 3333322 2246899998422 121 1123333 3444434
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
++||+-+.
T Consensus 76 ~~~ii~lt 83 (238)
T 2gwr_A 76 GVPIVMLT 83 (238)
T ss_dssp CCCEEEEE
T ss_pred CCcEEEEe
Confidence 78888765
No 157
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=63.82 E-value=14 Score=28.00 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=43.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+|+||||........+-+.|.. .|..+....+ .++....+ +...+|.|++--. -|. ...+.++.+ +++..
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~----~~~a~~~~-~~~~~dlvl~D~~--l~~-~~g~~~~~~-l~~~~ 71 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTK-EGYEVVTAFN----GREALEQF-EAEQPDIIILDLM--LPE-IDGLEVAKT-IRKTS 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHHCCSEEEECSS--CSS-SCHHHHHHH-HHHHC
T ss_pred ceEEEEcCCHHHHHHHHHHHHh-cCcEEEEecC----HHHHHHHH-HhCCCCEEEEecc--CCC-CCHHHHHHH-HHhCC
Confidence 4899999755555556677766 6876544332 33443333 2246899988422 121 112333333 34445
Q ss_pred CCCEEEEcH
Q 046651 85 DVPILGVCL 93 (392)
Q Consensus 85 ~iPILGVCL 93 (392)
.+|++-+.-
T Consensus 72 ~~~ii~~s~ 80 (120)
T 2a9o_A 72 SVPILMLSA 80 (120)
T ss_dssp CCCEEEEES
T ss_pred CCCEEEEec
Confidence 889887753
No 158
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=63.78 E-value=16 Score=28.02 Aligned_cols=79 Identities=10% Similarity=0.137 Sum_probs=43.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
..++||||........+-..|.. .|..+....+ .++....+ +...+|.||+--. -|. ...+.++.+ +++.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~----~~~a~~~~-~~~~~dlvi~D~~--l~~-~~g~~~~~~-l~~~ 72 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEA-EGYDVFEATD----GAEMHQIL-SEYDINLVIMDIN--LPG-KNGLLLARE-LREQ 72 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT-TTCEEEEESS----HHHHHHHH-HHSCCSEEEECSS--CSS-SCHHHHHHH-HHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHhh-CCcEEEEeCC----HHHHHHHH-hcCCCCEEEEcCC--CCC-CCHHHHHHH-HHhC
Confidence 35899999754455556666765 5776543322 34444333 2257999988422 121 112333433 3333
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
..+|++-+.
T Consensus 73 ~~~~ii~~s 81 (123)
T 1xhf_A 73 ANVALMFLT 81 (123)
T ss_dssp CCCEEEEEE
T ss_pred CCCcEEEEE
Confidence 578888764
No 159
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=63.75 E-value=9.8 Score=33.02 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=36.4
Q ss_pred CccEEEEEEC---------CCCchHHHHHHHHHhC-----CCCeEE--EeCCCCCHHHHHhhhccc---CCcCEEEECCC
Q 046651 3 EFVRTLLIDN---------YDSYTYNIYQELSTIN-----GVPPVV--VRNDEWTWRDICRYLYEE---NAFDNIVISPG 63 (392)
Q Consensus 3 ~~~r~LlIDn---------yDSyT~nl~q~L~~v~-----G~~pvV--V~nd~~~~eel~~~l~e~---~~fDgIVISpG 63 (392)
..||+.||-- +|++...|.+.|.. + |.+++. +-.|+ .+++...|-+. ..+|.||+|||
T Consensus 4 ~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~-~~~~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG 80 (167)
T 1uuy_A 4 PEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDS-SSEKLGGAKVVATAVVPDE--VERIKDILQKWSDVDEMDLILTLGG 80 (167)
T ss_dssp CSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHH-TTTTTTSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CCcEEEEEEECCcccCCCCccCcHHHHHHHHHh-ccccCCCcEEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3467777742 45666677888876 6 877643 22333 34444433222 36899999988
Q ss_pred CC
Q 046651 64 PG 65 (392)
Q Consensus 64 PG 65 (392)
-|
T Consensus 81 ~g 82 (167)
T 1uuy_A 81 TG 82 (167)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 160
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=63.67 E-value=21 Score=28.05 Aligned_cols=84 Identities=12% Similarity=-0.080 Sum_probs=45.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhccc----CCcCEEEECCCCCCCCCCCchhHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEE----NAFDNIVISPGPGSPACPEDIGICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~----~~fDgIVISpGPGsp~~~~d~gi~~~l 79 (392)
.+++||||........+...|.. .|....|.... +.++....+.+. ..+|.||+--. -|. ...+.++.++
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~-~~~~~~v~~~~--~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~-~~g~~~~~~l 82 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRM-THRVEEIQSVT--SGNAAINKLNELYAAGRWPSIICIDIN--MPG-INGWELIDLF 82 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHT-TCCEEEEEEES--SHHHHHHHHHHHHTSSCCCSEEEEESS--CSS-SCHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHh-cCCCeeeeecC--CHHHHHHHHHHhhccCCCCCEEEEcCC--CCC-CCHHHHHHHH
Confidence 46899999754444556666665 56622333222 245665544221 56999999422 111 2234444444
Q ss_pred HH----HcCCCCEEEEcH
Q 046651 80 LL----ECWDVPILGVCL 93 (392)
Q Consensus 80 l~----~~~~iPILGVCL 93 (392)
-. ....+||+-+.-
T Consensus 83 ~~~~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 83 KQHFQPMKNKSIVCLLSS 100 (146)
T ss_dssp HHHCGGGTTTCEEEEECS
T ss_pred HHhhhhccCCCeEEEEeC
Confidence 43 235888887764
No 161
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=63.65 E-value=4.5 Score=31.70 Aligned_cols=52 Identities=15% Similarity=0.062 Sum_probs=33.7
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
.+||||||........+.+.|.. .|..+....+ .++....+ +...+|.||+-
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~a~~~l-~~~~~dlii~d 57 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKR-DHWQVEIAHN----GFDAGIKL-STFEPAIMTLD 57 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHTCCSEEEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHH-CCcEEEEeCC----HHHHHHHH-HhcCCCEEEEe
Confidence 47899999865556667777776 6876654432 34444433 33679999984
No 162
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=63.63 E-value=32 Score=29.42 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=22.6
Q ss_pred cEEEEEECC-CCchHHHHHHHHHh---CCCCeEEEeCCC
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTI---NGVPPVVVRNDE 39 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v---~G~~pvVV~nd~ 39 (392)
||||||-.- .++|..+.+.+.+. .|.+++++.-.+
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 488888643 34577777776553 477777775544
No 163
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=63.36 E-value=14 Score=29.71 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=46.9
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
...|+||||........+-+.|.. .|...+|..... .++....+ +...+|.||+--.- |. ...+.++..+-..
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~-~~~~~~v~~~~~--~~~a~~~l-~~~~~dlii~d~~l--~~-~~g~~~~~~l~~~ 86 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSL-SGSVNVVGEADD--GAAALELI-KAHLPDVALLDYRM--PG-MDGAQVAAAVRSY 86 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHH-HSSEEEEEEESS--HHHHHHHH-HHHCCSEEEEETTC--SS-SCHHHHHHHHHHT
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhh-CCCeEEEEEeCC--HHHHHHHH-HhcCCCEEEEeCCC--CC-CCHHHHHHHHHhc
Confidence 347899999765556667777877 464333322222 44554444 22579999994221 11 1223444444333
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
...+||+-+.-
T Consensus 87 ~~~~~ii~~s~ 97 (152)
T 3eul_A 87 ELPTRVLLISA 97 (152)
T ss_dssp TCSCEEEEEES
T ss_pred CCCCeEEEEEc
Confidence 45788887763
No 164
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=63.20 E-value=5.8 Score=34.54 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=45.3
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
||+||||........+...|.. .|..++.+. +.++....+ +...+|.|| .|+ ...+.++..+-.. .
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~al~~l-~~~~~dlvi-lp~------~~g~~~~~~lr~~-~ 66 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNV-KGFMADVTE----SLEDGEYLM-DIRNYDLVM-VSD------KNALSFVSRIKEK-H 66 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGG-GTCCEEEES----SHHHHHHHH-TTSCCSEEE-ECC------TTHHHHHHHHHHH-C
T ss_pred CEEEEEcCCHHHHHHHHHHHHH-CCcEEEEEC----CHHHHHHHH-hcCCCCEEE-eCC------CCHHHHHHHHHhC-C
Confidence 7899999765555667777776 688765432 245555444 335789888 222 1123444444333 4
Q ss_pred -CCCEEEEcH
Q 046651 85 -DVPILGVCL 93 (392)
Q Consensus 85 -~iPILGVCL 93 (392)
++||+-+.-
T Consensus 67 ~~~~ii~lt~ 76 (223)
T 2hqr_A 67 SSIVVLVSSD 76 (223)
T ss_dssp TTSEEEEEES
T ss_pred CCCcEEEEEC
Confidence 789988763
No 165
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=62.44 E-value=9.5 Score=29.55 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=44.7
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..||+||||........+-..|.. .|...+..-.+ .++....+ +...+|.|++--. -|. ...+.++ +.+++
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~-~~~~~v~~~~~---~~~a~~~~-~~~~~dlvi~D~~--l~~-~~g~~l~-~~l~~ 73 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKE-LGFNNVEEAED---GVDALNKL-QAGGYGFVISDWN--MPN-MDGLELL-KTIRA 73 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHH-TTCCCEEEESS---HHHHHHHH-TTCCCCEEEEESC--CSS-SCHHHHH-HHHHC
T ss_pred CccEEEEECCCHHHHHHHHHHHHH-cCCcEEEeeCC---HHHHHHHH-HhcCCCEEEEeCC--CCC-CCHHHHH-HHHHh
Confidence 468999999855555556677766 67733222222 34444443 3356899988321 121 1122333 33443
Q ss_pred ---cCCCCEEEEcH
Q 046651 83 ---CWDVPILGVCL 93 (392)
Q Consensus 83 ---~~~iPILGVCL 93 (392)
...+||+-+.-
T Consensus 74 ~~~~~~~~ii~~s~ 87 (128)
T 1jbe_A 74 XXAMSALPVLMVTA 87 (128)
T ss_dssp --CCTTCCEEEEES
T ss_pred hcccCCCcEEEEec
Confidence 24788887753
No 166
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=62.40 E-value=12 Score=29.76 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=31.1
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
+++||||........+...|.. .|..+.++. +.++....+ +...+|.||+-
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~-~~~~v~~~~----~~~~al~~l-~~~~~dlvllD 61 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEK-CTNDITVVT----NGLQALQAY-QNRQFDVIIMD 61 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTT-TCSEEEEES----SHHHHHHHH-HHSCCSEEEEC
T ss_pred ceEEEEcCCHHHHHHHHHHHHH-cCCceEEEC----CHHHHHHHH-hcCCCCEEEEe
Confidence 5899999755455556666654 576655442 234444433 23579999983
No 167
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=62.29 E-value=5 Score=31.91 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=40.4
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
.+|+||||........+.+.|.. . ..+... . +.++....+ +...+|.||+--.- |. ...+.++.+ +++
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~-~-~~v~~~--~--~~~~a~~~~-~~~~~dlvi~D~~l--~~-~~g~~~~~~-l~~~ 71 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDS-E-YLVIES--K--NEKEALEQI-DHHHPDLVILDMDI--IG-ENSPNLCLK-LKRS 71 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-T-SEEEEE--S--SHHHHHHHH-HHHCCSEEEEETTC---------CHHHH-HHTS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHh-c-ceEEEe--C--CHHHHHHHH-hcCCCCEEEEeCCC--CC-CcHHHHHHH-HHcC
Confidence 57899999754445556666654 2 333322 2 245555444 23579999994221 11 112333333 343
Q ss_pred c--CCCCEEEEc
Q 046651 83 C--WDVPILGVC 92 (392)
Q Consensus 83 ~--~~iPILGVC 92 (392)
. ..+||+-+.
T Consensus 72 ~~~~~~~ii~~s 83 (140)
T 3n53_A 72 KGLKNVPLILLF 83 (140)
T ss_dssp TTCTTCCEEEEE
T ss_pred cccCCCCEEEEe
Confidence 2 578887665
No 168
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=61.87 E-value=25 Score=33.19 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=51.0
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEE-------eCCCCCHHHHHhhhc------ccCCcCEEEECCCCCCCCCCCc
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVV-------RNDEWTWRDICRYLY------EENAFDNIVISPGPGSPACPED 72 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV-------~nd~~~~eel~~~l~------e~~~fDgIVISpGPGsp~~~~d 72 (392)
+|.|+|-+-+ +..+++.+.+.+..+..+. ++-..+++++..++. +...+|.|||. |...
T Consensus 24 ~IGvfDsG~G-gltv~~~i~~~~P~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~IVIa-------CNTa 95 (286)
T 2jfq_A 24 PIGVIDSGVG-GLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIA-------CNTA 95 (286)
T ss_dssp CEEEEESSST-THHHHHHHHHHCTTCCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEEC-------CHHH
T ss_pred cEEEEeCCCC-cHHHHHHHHHHCCCccEEEeccCCCCCcCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-------CCch
Confidence 5999987655 7788888888766554333 232334665544433 34578999993 4333
Q ss_pred hhHHHHHHHHcCCCCEEEEcH
Q 046651 73 IGICLRVLLECWDVPILGVCL 93 (392)
Q Consensus 73 ~gi~~~ll~~~~~iPILGVCL 93 (392)
-....+.+++.-++||+||.-
T Consensus 96 s~~~l~~lr~~~~iPVigi~e 116 (286)
T 2jfq_A 96 TAVALEYLQKTLSISVIGVIE 116 (286)
T ss_dssp HHHHHHHHHHHCSSEEEESHH
T ss_pred hHHHHHHHHHhCCCCEEeccH
Confidence 323456666644999999875
No 169
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=61.34 E-value=7 Score=34.75 Aligned_cols=93 Identities=15% Similarity=0.047 Sum_probs=51.6
Q ss_pred ccEEEEEE---------CCCCchHHHHHHHHHhCCCCeEEE--eCCCCCHHHHHhhhccc-CCcCEEEECCCCCCCCCCC
Q 046651 4 FVRTLLID---------NYDSYTYNIYQELSTINGVPPVVV--RNDEWTWRDICRYLYEE-NAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 4 ~~r~LlID---------nyDSyT~nl~q~L~~v~G~~pvVV--~nd~~~~eel~~~l~e~-~~fDgIVISpGPGsp~~~~ 71 (392)
.||+.||- -+|++.+-|.++|.+ .|.++..+ -.|+ .+++...|-+. ..+|.||+|||-|-- ..
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~-~G~~v~~~~iv~Dd--~~~I~~~l~~a~~~~DlVittGG~g~~--~~ 77 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTY-HGYQVRRGFVVMDD--LDEIGWAFRVALEVSDLVVSSGGLGPT--FD 77 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHH-TTCEEEEEEEECSC--HHHHHHHHHHHHHHCSEEEEESCCSSS--TT
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHH-CCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCEEEEcCCCcCC--cc
Confidence 36766663 346677779999988 79876432 2333 33333332111 348999999986532 12
Q ss_pred chhHHHHHHHHcCCCCEEEEcHHHHHHHHHhC
Q 046651 72 DIGICLRVLLECWDVPILGVCLGHQALGFVHG 103 (392)
Q Consensus 72 d~gi~~~ll~~~~~iPILGVCLGhQ~La~a~G 103 (392)
|+ ..+.+.+.-+.++.+-=--.+.|-..++
T Consensus 78 D~--T~ea~a~~~~~~l~~~~e~~~~i~~~~~ 107 (172)
T 3kbq_A 78 DM--TVEGFAKCIGQDLRIDEDALAMIKKKYG 107 (172)
T ss_dssp CC--HHHHHHHHHTCCCEECHHHHHHHHHHHC
T ss_pred cc--hHHHHHHHcCCCeeeCHHHHHHHHHHHc
Confidence 33 2334433225566555555556655554
No 170
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=61.21 E-value=7.9 Score=33.17 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=44.9
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
..++||||........+...|.. .|..++.. . +.++....+ +...+|.||+--. -|. ..-+.++.++-...
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~--~--~~~~al~~~-~~~~~dlvl~D~~--lp~-~~g~~~~~~l~~~~ 74 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRS-AGFEVETF--D--CASTFLEHR-RPEQHGCLVLDMR--MPG-MSGIELQEQLTAIS 74 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT-TTCEEEEE--S--SHHHHHHHC-CTTSCEEEEEESC--CSS-SCHHHHHHHHHHTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHh-CCceEEEc--C--CHHHHHHhh-hccCCCEEEEeCC--CCC-CCHHHHHHHHHhcC
Confidence 35899999865556667777776 67765433 2 245555544 3356898888311 121 12233343333334
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
.++||+-+.
T Consensus 75 ~~~~ii~ls 83 (208)
T 1yio_A 75 DGIPIVFIT 83 (208)
T ss_dssp CCCCEEEEE
T ss_pred CCCCEEEEe
Confidence 477877664
No 171
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=61.16 E-value=11 Score=28.78 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=44.1
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC- 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~- 83 (392)
+++||||........+.+.|.. .|..+....+ .++...++ +...+|.|++--. -|. ...+.++ +.+++.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~----~~~a~~~~-~~~~~dlvi~D~~--l~~-~~g~~~~-~~l~~~~ 71 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEA-QGYETLQTRE----GLSALSIA-RENKPDLILMDIQ--LPE-ISGLEVT-KWLKEDD 71 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESC----HHHHHHHH-HHHCCSEEEEESB--CSS-SBHHHHH-HHHHHST
T ss_pred cEEEEEcCCHHHHHHHHHHHHH-cCcEEEEeCC----HHHHHHHH-hcCCCCEEEEeCC--CCC-CCHHHHH-HHHHcCc
Confidence 5899999765555667777776 6876543322 33444333 2246899998321 121 1123333 444442
Q ss_pred --CCCCEEEEcH
Q 046651 84 --WDVPILGVCL 93 (392)
Q Consensus 84 --~~iPILGVCL 93 (392)
..+||+-+.-
T Consensus 72 ~~~~~~ii~~s~ 83 (124)
T 1mb3_A 72 DLAHIPVVAVTA 83 (124)
T ss_dssp TTTTSCEEEEC-
T ss_pred cccCCcEEEEEC
Confidence 4789988864
No 172
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=61.07 E-value=9.2 Score=35.80 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=43.9
Q ss_pred cEEEEEECCCC-----chHHHHHHHHHhCCCCeEEEeCC----------CCCHHHHHhhhcccCCcCEEEECCCCCCCCC
Q 046651 5 VRTLLIDNYDS-----YTYNIYQELSTINGVPPVVVRND----------EWTWRDICRYLYEENAFDNIVISPGPGSPAC 69 (392)
Q Consensus 5 ~r~LlIDnyDS-----yT~nl~q~L~~v~G~~pvVV~nd----------~~~~eel~~~l~e~~~fDgIVISpGPGsp~~ 69 (392)
+|++||-|..+ ....+.+.|.+ .|.++.+.... ....+++. ..+|.||..||-|+..
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~D~vi~~GGDGT~l- 77 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCD-QGYEVIVEQQIAHELQLKNVPTGTLAEIG------QQADLAVVVGGDGNML- 77 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHH-TTCEEEEEHHHHHHTTCSSCCEECHHHHH------HHCSEEEECSCHHHHH-
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcccccccccchhhcc------cCCCEEEEEcCcHHHH-
Confidence 46999988543 13346677766 68887654311 00111211 3589999999988631
Q ss_pred CCchhHHHHHHHHcCCCCEEEEcHHH
Q 046651 70 PEDIGICLRVLLECWDVPILGVCLGH 95 (392)
Q Consensus 70 ~~d~gi~~~ll~~~~~iPILGVCLGh 95 (392)
...+.+... ++|+|||=+|.
T Consensus 78 -----~a~~~~~~~-~~P~lGI~~Gt 97 (292)
T 2an1_A 78 -----GAARTLARY-DINVIGINRGN 97 (292)
T ss_dssp -----HHHHHHTTS-SCEEEEBCSSS
T ss_pred -----HHHHHhhcC-CCCEEEEECCC
Confidence 122222223 79999997663
No 173
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=60.99 E-value=25 Score=30.65 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=24.1
Q ss_pred ccEEEEEECC-CCchHHHHHHHHHh---CCCCeEEEeCCC
Q 046651 4 FVRTLLIDNY-DSYTYNIYQELSTI---NGVPPVVVRNDE 39 (392)
Q Consensus 4 ~~r~LlIDny-DSyT~nl~q~L~~v---~G~~pvVV~nd~ 39 (392)
.||||+|-.- .++|..+.+.+.+. .|.+++++.-.+
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 4789988653 35677777776554 577887776443
No 174
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=60.75 E-value=4 Score=31.91 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=50.3
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+|+||||........+...|.. .+..+.... +.+++...+ +.. +|.||+--. -|. ...+.++.++-...
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~----~~~~~~~~~-~~~-~dlvi~D~~--l~~-~~g~~~~~~l~~~~ 72 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEP-IFGNVEAFQ----HPRAFLTLS-LNK-QDIIILDLM--MPD-MDGIEVIRHLAEHK 72 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TCSCEEEES----CHHHHTTSC-CCT-TEEEEEECC--TTT-THHHHHHHHHHHTT
T ss_pred cceEEEEeCCHHHHHHHHHHHHh-hcceeeeec----CHHHHHHhh-ccC-CCEEEEeCC--CCC-CCHHHHHHHHHhCC
Confidence 57899999755555556666665 355554432 245555544 334 999998422 111 12233444443334
Q ss_pred CCCCEEEEcHHH-------HHHHHHhCCe
Q 046651 84 WDVPILGVCLGH-------QALGFVHGAD 105 (392)
Q Consensus 84 ~~iPILGVCLGh-------Q~La~a~Gg~ 105 (392)
..+||+-+.--. +.+..+.++.
T Consensus 73 ~~~~ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 73 SPASLILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp CCCEEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEEeccchhHHHHHHHHHHcCCC
Confidence 578887665322 4455555544
No 175
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=60.10 E-value=3.6 Score=37.81 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=31.4
Q ss_pred CCcCEEEECCCCCCCCCCCchhHH-HHHHHHcCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGIC-LRVLLECWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~-~~ll~~~~~iPILGVCLGhQ~La~a 101 (392)
.+.|+|.++-|||+.+.. .+|+. .+-|....++|++||+- +++++..
T Consensus 65 ~dld~Iav~~GPGsfTGl-RiG~~~Ak~La~~~~iPl~gVs~-l~a~a~~ 112 (218)
T 2a6a_A 65 KDLDVVGVGIGPGGLTGL-RVGIATVVGLVSPYDIPVAPLNS-FEMTAKS 112 (218)
T ss_dssp GGCSEEEEECCSSCHHHH-HHHHHHHHHHHGGGTCCEEEECH-HHHHHHT
T ss_pred HHCCEEEEEcCCCchHhH-HHHHHHHHHHHHHcCCCEEEeCc-HHHHHhh
Confidence 357999999999998641 22221 23333345999999995 6666654
No 176
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=59.98 E-value=13 Score=35.05 Aligned_cols=49 Identities=8% Similarity=-0.033 Sum_probs=34.4
Q ss_pred cEEEEEECC--CCchHHHHHHHHHhCCCCeEEEeCCCC--CHHHHHhhhcccCCcCEEEEC
Q 046651 5 VRTLLIDNY--DSYTYNIYQELSTINGVPPVVVRNDEW--TWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 5 ~r~LlIDny--DSyT~nl~q~L~~v~G~~pvVV~nd~~--~~eel~~~l~e~~~fDgIVIS 61 (392)
.|+|||+.. ..-...|.++|+. .|+++.++..++. +.+++ .+||.||++
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~-~g~~V~~i~~~~~~~~~~~L-------~~yDvIIl~ 57 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTS-WQWEFDYIPSHVGLDVGELL-------AKQDLVILS 57 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHH-TTCCCEEECTTSCBCSSHHH-------HTCSEEEEE
T ss_pred ceEEEECCCCchhHHHHHHHHHHh-CCceEEEecccccccChhHH-------hcCCEEEEc
Confidence 468999632 1124567778887 7999999988765 34555 459999995
No 177
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=59.68 E-value=37 Score=28.16 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=21.8
Q ss_pred EEEEE---ECCCCchHHHHHHHHHhCCCCeEEEeCC
Q 046651 6 RTLLI---DNYDSYTYNIYQELSTINGVPPVVVRND 38 (392)
Q Consensus 6 r~LlI---DnyDSyT~nl~q~L~~v~G~~pvVV~nd 38 (392)
.|++| ++.+++.+.+++.|.+ .|.++..|...
T Consensus 6 siAVVGaS~~~~~~g~~v~~~L~~-~g~~V~pVnP~ 40 (122)
T 3ff4_A 6 KTLILGATPETNRYAYLAAERLKS-HGHEFIPVGRK 40 (122)
T ss_dssp CEEEETCCSCTTSHHHHHHHHHHH-HTCCEEEESSS
T ss_pred EEEEEccCCCCCCHHHHHHHHHHH-CCCeEEEECCC
Confidence 36677 3445677889998887 57777666543
No 178
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=59.17 E-value=9.3 Score=36.44 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=43.5
Q ss_pred cEEEEEECCCCc-----hHHHHHHHHHhCCCCeEEEeCCCCCH------H--------HHHhh--h-cccCCcCEEEECC
Q 046651 5 VRTLLIDNYDSY-----TYNIYQELSTINGVPPVVVRNDEWTW------R--------DICRY--L-YEENAFDNIVISP 62 (392)
Q Consensus 5 ~r~LlIDnyDSy-----T~nl~q~L~~v~G~~pvVV~nd~~~~------e--------el~~~--l-~e~~~fDgIVISp 62 (392)
+|++||-|..+- ...+.+.|.. .|.++.+........ . ++... . .....+|.||.-|
T Consensus 5 ~ki~iI~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~G 83 (307)
T 1u0t_A 5 RSVLLVVHTGRDEATETARRVEKVLGD-NKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLG 83 (307)
T ss_dssp CEEEEEESSSGGGGSHHHHHHHHHHHT-TTCEEEEEC-----------------------------------CCCEEEEE
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEe
Confidence 479999997653 2345666665 688776543322110 0 01000 0 0114689999989
Q ss_pred CCCCCCCCCchhHHHHHHHHcCCCCEEEEcHHH
Q 046651 63 GPGSPACPEDIGICLRVLLECWDVPILGVCLGH 95 (392)
Q Consensus 63 GPGsp~~~~d~gi~~~ll~~~~~iPILGVCLGh 95 (392)
|.|+.. ...+.+... ++|+|||=+|.
T Consensus 84 GDGT~l------~a~~~~~~~-~~pvlgi~~G~ 109 (307)
T 1u0t_A 84 GDGTFL------RAAELARNA-SIPVLGVNLGR 109 (307)
T ss_dssp CHHHHH------HHHHHHHHH-TCCEEEEECSS
T ss_pred CCHHHH------HHHHHhccC-CCCEEEEeCCC
Confidence 988632 122333333 89999998773
No 179
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=58.58 E-value=13 Score=32.22 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=45.5
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+++||||........+...|.. .|..+..+. +.++....+ +...+|.||+--. -|. ...+.++.++ ++..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~al~~~-~~~~~dlvllD~~--l~~-~~g~~~~~~l-~~~~ 74 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRK-EGFEATVVT----DGPAALAEF-DRAGADIVLLDLM--LPG-MSGTDVCKQL-RARS 74 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEEC----SHHHHHHHH-HHHCCSEEEEESS--CSS-SCHHHHHHHH-HHHC
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-CCCEEEEEC----CHHHHHHHH-hccCCCEEEEECC--CCC-CCHHHHHHHH-HcCC
Confidence 5899999765556667777776 687654332 234444433 2246899998422 121 1223334443 3335
Q ss_pred CCCEEEEcH
Q 046651 85 DVPILGVCL 93 (392)
Q Consensus 85 ~iPILGVCL 93 (392)
++||+-+.-
T Consensus 75 ~~~ii~lt~ 83 (230)
T 2oqr_A 75 SVPVIMVTA 83 (230)
T ss_dssp SCSEEEEEC
T ss_pred CCCEEEEeC
Confidence 899987753
No 180
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=58.53 E-value=3.5 Score=31.67 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=33.6
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
..+++||||........+.+.|.. .|..+....+ .++....+ +...+|.||+-
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~----~~~~~~~~-~~~~~dlvi~d 54 (124)
T 1dc7_A 2 QRGIVWVVDDDSSIRWVLERALAG-AGLTCTTFEN----GNEVLAAL-ASKTPDVLLSD 54 (124)
T ss_dssp CCCCCEEECSSSSHHHHHHHHHTT-TTCCCEECCC----TTHHHHHS-SSCCCSCEEEC
T ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCcEEEEeCC----HHHHHHHH-hcCCCCEEEEe
Confidence 346899999866666667777765 5777654332 23444433 33568999884
No 181
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=58.36 E-value=7.4 Score=31.07 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=43.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+++||||........+...|.. .|..+..+.+ .++...++ +...+|.||+--. -|. ...+.++ +.|++.
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~al~~~-~~~~~dlvllD~~--l~~-~~g~~l~-~~l~~~ 73 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEE-KGISIDLAYN----CEEAIGKI-FSNKYDLIFLEII--LSD-GDGWTLC-KKIRNV 73 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT-TTCEEEEESS----HHHHHHHH-HHCCCSEEEEESE--ETT-EEHHHHH-HHHHTT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHH-HhcCCCEEEEeCC--CCC-CCHHHHH-HHHccC
Confidence 47899999755555567777765 5776543322 34444433 2257999988321 111 1122333 334443
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
..+||+-+.
T Consensus 74 ~~~~ii~ls 82 (136)
T 2qzj_A 74 TTCPIVYMT 82 (136)
T ss_dssp CCCCEEEEE
T ss_pred CCCCEEEEE
Confidence 378888764
No 182
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=58.32 E-value=10 Score=32.26 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=20.7
Q ss_pred ccEEEEEECC---CCchHHHHHHHHHhCCCCeEEE
Q 046651 4 FVRTLLIDNY---DSYTYNIYQELSTINGVPPVVV 35 (392)
Q Consensus 4 ~~r~LlIDny---DSyT~nl~q~L~~v~G~~pvVV 35 (392)
.||||+|... +|+|..|.+.+.+ |.+..++
T Consensus 3 mMkilii~~S~r~~g~t~~la~~~~~--~~~~~~~ 35 (184)
T 1rli_A 3 AMKIAVINGGTRSGGNTDVLAEKAVQ--GFDAEHI 35 (184)
T ss_dssp --CEEEEESSCSSCCHHHHHHHHHHT--TTCCEEE
T ss_pred CcEEEEEECCCCCCccHHHHHHHHHc--CCeEEEE
Confidence 4789999765 3789999999986 4454444
No 183
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=58.10 E-value=10 Score=31.99 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=32.1
Q ss_pred cEEEEEECC-CCchHHHHHHHHHhCCC-CeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTINGV-PPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v~G~-~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
||++||=.- -..|..+++.|++.++. ++.++.-++.+.+++ ..+|.|||
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~~v~~~~~~~~~~~~l-------~~~d~ii~ 52 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDL-------NDYQYLII 52 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEETTTCCGGGG-------GGCSEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcCCcEEEEcccCCHHHH-------hhCCEEEE
Confidence 788888432 23466788888876654 456666555444544 45999999
No 184
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=57.84 E-value=8.6 Score=33.89 Aligned_cols=59 Identities=20% Similarity=0.103 Sum_probs=35.5
Q ss_pred CccEEEEEEC---------CCCchHHHHHHHH---HhCCCCe--EEEeCCCCCHHHHHhhhccc---CCcCEEEECCCCC
Q 046651 3 EFVRTLLIDN---------YDSYTYNIYQELS---TINGVPP--VVVRNDEWTWRDICRYLYEE---NAFDNIVISPGPG 65 (392)
Q Consensus 3 ~~~r~LlIDn---------yDSyT~nl~q~L~---~v~G~~p--vVV~nd~~~~eel~~~l~e~---~~fDgIVISpGPG 65 (392)
..||+.||-- +|++.+.|.++|. + .|.++ .+|+ |+ .+++...|-+. ..+|.||++||-|
T Consensus 4 ~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~-~G~~v~~~iv~-Dd--~~~I~~~l~~~~~~~~~DlVittGG~g 79 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVII-TPFEVEYRVIP-DE--RDLIEKTLIELADEKGCSLILTTGGTG 79 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBC-SCCEEEEEEEC-SC--HHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHh-CCCEEEEEEcC-CC--HHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3578877743 5666777888777 5 68765 2233 33 33433333221 2689999998865
No 185
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=57.62 E-value=4.7 Score=32.66 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=30.9
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
..||+||||........+-+.|.. .|..++.+.+ .++....+ +...+|.||+-
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~al~~~-~~~~~dlvl~D 65 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEK-AGHKVLCVNG----AEQVLDAM-AEEDYDAVIVD 65 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC---CEEEEESS----HHHHHHHH-HHSCCSEEEEE
T ss_pred ccceEEEEeCCHHHHHHHHHHHHH-cCCeEEEeCC----HHHHHHHH-hcCCCCEEEEe
Confidence 348999999754445556666765 6776654432 34444433 33679999983
No 186
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=57.57 E-value=27 Score=29.51 Aligned_cols=75 Identities=8% Similarity=-0.010 Sum_probs=45.5
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+++||||........+...|.. .|..++...+....+ . ..+|.||+--. -| ..-|++.+.++.
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al----~-----~~~dlvl~D~~--mp---~~~g~l~~~~~~ 75 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIR-IGCSVRQCWPPPEAF----D-----VPVDVVFTSIF--QN---RHHDEIAALLAA 75 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHH-HTCEEEEECSCCSSC----S-----SCCSEEEEECC--SS---THHHHHHHHHHH
T ss_pred cCCeEEEEcCChhHHHHHHHHHHH-cCCeEEEecCchhhC----C-----CCCCEEEEeCC--CC---ccchHHHHHHhc
Confidence 357999999866666667777776 588776554433211 1 46898888321 12 111445566665
Q ss_pred c-CCCCEEEEc
Q 046651 83 C-WDVPILGVC 92 (392)
Q Consensus 83 ~-~~iPILGVC 92 (392)
. ..+||+-+.
T Consensus 76 ~~~~~~ii~lt 86 (196)
T 1qo0_D 76 GTPRTTLVALV 86 (196)
T ss_dssp SCTTCEEEEEE
T ss_pred cCCCCCEEEEE
Confidence 4 577877664
No 187
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=55.85 E-value=5.1 Score=34.84 Aligned_cols=50 Identities=22% Similarity=0.170 Sum_probs=31.5
Q ss_pred CCCchHHHHHHHHHhCCCCeEE--EeCCCCCHHHHHhhhccc-C--CcCEEEECCCCC
Q 046651 13 YDSYTYNIYQELSTINGVPPVV--VRNDEWTWRDICRYLYEE-N--AFDNIVISPGPG 65 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~pvV--V~nd~~~~eel~~~l~e~-~--~fDgIVISpGPG 65 (392)
+|++.+.|.++|.+ .|.+++. +-.|+ .+++...|-+. . .+|.||++||-|
T Consensus 19 ~D~n~~~l~~~l~~-~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~g 73 (164)
T 2is8_A 19 QDTTHLAIREVLAG-GPFEVAAYELVPDE--PPMIKKVLRLWADREGLDLILTNGGTG 73 (164)
T ss_dssp CCCHHHHHHHHHTT-SSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred ccchHHHHHHHHHH-CCCeEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 57788889999987 6887642 22333 23333333221 2 689999998865
No 188
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=55.67 E-value=1.3e+02 Score=28.31 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=75.3
Q ss_pred CccEEEEEECCCCch-----HHHHHHHHHhCC-CCeEEEeCCCC--CHHHHHhhhcccCCcCEEEECCCCCCCCCCCchh
Q 046651 3 EFVRTLLIDNYDSYT-----YNIYQELSTING-VPPVVVRNDEW--TWRDICRYLYEENAFDNIVISPGPGSPACPEDIG 74 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT-----~nl~q~L~~v~G-~~pvVV~nd~~--~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~g 74 (392)
...|+|||+-..... .-|.+.|++ .| +++++...... +.+.+...| .+||.||+.-. +..-..+...
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~-~g~f~V~~~~d~~~~~d~~~f~~~L---~~~D~vV~~~~-~~~l~~~~~~ 77 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILEN-SGRFDVDFVISPEQGKDMSGFVLDF---SPYQLVVLDYN-GDSWPEETNR 77 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHH-TTSEEEEEEECCCTTSCCTTCCCCC---TTCSEEEECCC-SSCCCHHHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHh-cCCEEEEEEeCCccccchhHHhhhh---hcCCEEEEeCC-CCcCCHHHHH
Confidence 457999996432221 245566666 56 88887754210 011111112 67999998542 2221111112
Q ss_pred HHHHHHHHcCCCCEEEEcHHHH------HHHHHhC-Cee------------------eecC----CCceecee--E--EE
Q 046651 75 ICLRVLLECWDVPILGVCLGHQ------ALGFVHG-ADI------------------VHAP----EPVHGRLS--E--IV 121 (392)
Q Consensus 75 i~~~ll~~~~~iPILGVCLGhQ------~La~a~G-g~V------------------~~ap----ep~hG~~s--~--i~ 121 (392)
...+.++ .+.+++|+.-+.- ......| |.- +..+ ...|+... . +.
T Consensus 78 ~l~~yV~--~Ggglv~~H~a~~~~~~w~~y~~liG~g~f~~r~~~~gp~~~~~~g~~v~~~~~g~~~~Hp~~~~~~v~v~ 155 (281)
T 4e5v_A 78 RFLEYVQ--NGGGVVIYHAADNAFSKWPEFNRICALGGWEGRNENSGPYVYWKDGKLVKDSSAGPGGSHGRQHEYVLNGR 155 (281)
T ss_dssp HHHHHHH--TTCEEEEEGGGGGSCTTCHHHHHHHSCBCCTTCSGGGCCEEEEETTEEEEECCSCCSCBCCSCEEEEEEES
T ss_pred HHHHHHH--cCCCEEEEecccccCCCCHHHHHheecccccccccccccceeecccccccccccccccCCCCCceEEEEEc
Confidence 2223332 4899999987542 3445566 532 1100 02344322 1 23
Q ss_pred ecCCcccccCCCCCCcceEE-E--eeecceeecCCCCCCcEEEEEecC
Q 046651 122 HNGDRLFHDIPSGQNSGFKV-V--RYHSLIIDADSLPKELIPIAWSNS 166 (392)
Q Consensus 122 h~g~~LF~~ips~~~s~f~V-v--ryHSl~V~~~sLP~~l~~iAwt~~ 166 (392)
...+++.+++|.. |.. . .|.-.. . ..+++.+++....
T Consensus 156 ~~~HPit~Gl~~~----~~~~~dE~Y~~~~-~---p~~~~~VL~t~~~ 195 (281)
T 4e5v_A 156 DKVHPVVKGLPLK----WRHAKDELYDRMR-G---PGNIRDILYTAYS 195 (281)
T ss_dssp CSSSTTTTTSCSE----EEEEEECCCBSCB-S---CCCEEEEEEEEEC
T ss_pred CCCCchhhCCCCc----ccccccCCccccc-C---CCCCCEEEEEEec
Confidence 4589999999975 553 2 222221 1 2245777776654
No 189
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=55.55 E-value=14 Score=33.33 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=43.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+||||||........|...|.. .|..+.... +.++....+ +...+|.||+--. -|. ..-+.++ +.|++..
T Consensus 38 ~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~al~~~-~~~~~DlvllD~~--lp~-~~G~~l~-~~lr~~~ 107 (249)
T 3q9s_A 38 QRILVIEDDHDIANVLRMDLTD-AGYVVDHAD----SAMNGLIKA-REDHPDLILLDLG--LPD-FDGGDVV-QRLRKNS 107 (249)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT-TTCEEEEES----SHHHHHHHH-HHSCCSEEEEECC--SCH-HHHHHHH-HHHHTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHH-CCCEEEEeC----CHHHHHHHH-hcCCCCEEEEcCC--CCC-CCHHHHH-HHHHcCC
Confidence 5899999765555566677765 576443322 234444433 2357999999311 111 1112223 3344455
Q ss_pred CCCEEEEcH
Q 046651 85 DVPILGVCL 93 (392)
Q Consensus 85 ~iPILGVCL 93 (392)
++||+-+.-
T Consensus 108 ~~~iI~lt~ 116 (249)
T 3q9s_A 108 ALPIIVLTA 116 (249)
T ss_dssp CCCEEEEES
T ss_pred CCCEEEEEC
Confidence 789887764
No 190
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=55.46 E-value=23 Score=30.10 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=39.6
Q ss_pred ccEEEEEECC-CCchHHHHHHHHHh---CCCCeEEEeCCCC-CHHHHHhhhcccCCcCEEEECCCCCCCCCCC
Q 046651 4 FVRTLLIDNY-DSYTYNIYQELSTI---NGVPPVVVRNDEW-TWRDICRYLYEENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 4 ~~r~LlIDny-DSyT~nl~q~L~~v---~G~~pvVV~nd~~-~~eel~~~l~e~~~fDgIVISpGPGsp~~~~ 71 (392)
..+++||=.- ..+|..+++.|++. .|+++.++.-.+. +.+++..-+ ..+|+||| |+|....
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~---~~~d~ii~----Gspty~g 69 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELV---GRCTGLVI----GMSPAAS 69 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHH---HTEEEEEE----ECCBTTS
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHH---HhCCEEEE----EcCcCCC
Confidence 3567777321 23577777777554 4888888877766 666665434 56999999 6665433
No 191
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=55.07 E-value=13 Score=29.35 Aligned_cols=82 Identities=9% Similarity=0.153 Sum_probs=42.2
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+++||+|........+-+.|....+... |..... .++....+ +...+|.||+--. -|. ...+.++..+-...
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~-v~~~~~--~~~al~~~-~~~~~dlvilD~~--lp~-~~g~~~~~~l~~~~ 75 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEI-LADTDN--GLDAMKLI-EEYNPNVVILDIE--MPG-MTGLEVLAEIRKKH 75 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEE-EEEESC--HHHHHHHH-HHHCCSEEEECSS--CSS-SCHHHHHHHHHHTT
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEE-EEEcCC--HHHHHHHH-hhcCCCEEEEecC--CCC-CCHHHHHHHHHHHC
Confidence 46899999765555566677766323232 222222 34444333 2246899988321 121 11233333333334
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
..+||+-+.
T Consensus 76 ~~~~ii~ls 84 (133)
T 3b2n_A 76 LNIKVIIVT 84 (133)
T ss_dssp CSCEEEEEE
T ss_pred CCCcEEEEe
Confidence 578988774
No 192
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=53.98 E-value=5.7 Score=30.75 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=43.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC- 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~- 83 (392)
+|+||||........+...|.. .|..+..+. +.++...++ +...+|.||+--. -|. ...+.++ +.+++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~-~g~~v~~~~----~~~~a~~~~-~~~~~dlvi~D~~--l~~-~~g~~~~-~~l~~~~ 72 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQ-NGFQPVEAE----DYDSAVNQL-NEPWPDLILLAWM--LPG-GSGIQFI-KHLRRES 72 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEEC----SHHHHHTTC-SSSCCSEEEEESE--ETT-EEHHHHH-HHHHTST
T ss_pred cEEEEEcCCHHHHHHHHHHHHH-CCceEEEeC----CHHHHHHHH-hccCCCEEEEecC--CCC-CCHHHHH-HHHHhCc
Confidence 5899999755555566677766 687654332 245555544 3356899888311 111 1112223 344432
Q ss_pred --CCCCEEEEc
Q 046651 84 --WDVPILGVC 92 (392)
Q Consensus 84 --~~iPILGVC 92 (392)
.++||+-+.
T Consensus 73 ~~~~~~ii~~s 83 (127)
T 2jba_A 73 MTRDIPVVMLT 83 (127)
T ss_dssp TTTTSCEEEEE
T ss_pred ccCCCCEEEEe
Confidence 478888765
No 193
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=53.05 E-value=14 Score=30.51 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=41.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+||||||........+-+.|.. .|...++.... +.++....+ +...+|.||+--.- |. ...+.++..+-...
T Consensus 26 ~~ILivdd~~~~~~~l~~~L~~-~~~~~~v~~~~--~~~~al~~l-~~~~~dlvilD~~l--~~-~~g~~l~~~lr~~~- 97 (164)
T 3t8y_A 26 IRVLVVDDSAFMRMVLKDIIDS-QPDMKVVGFAK--DGLEAVEKA-IELKPDVITMDIEM--PN-LNGIEALKLIMKKA- 97 (164)
T ss_dssp EEEEEECSCHHHHHHHHHHHHT-STTEEEEEEES--SHHHHHHHH-HHHCCSEEEECSSC--SS-SCHHHHHHHHHHHS-
T ss_pred cEEEEEcCCHHHHHHHHHHHhc-CCCeEEEEecC--CHHHHHHHh-ccCCCCEEEEeCCC--CC-CCHHHHHHHHHhcC-
Confidence 6899999755555556666665 33222221222 234444433 22569999994211 11 12234444433334
Q ss_pred CCCEEEEcH
Q 046651 85 DVPILGVCL 93 (392)
Q Consensus 85 ~iPILGVCL 93 (392)
..|++-+.-
T Consensus 98 ~~~ii~~s~ 106 (164)
T 3t8y_A 98 PTRVIMVSS 106 (164)
T ss_dssp CCEEEEEES
T ss_pred CceEEEEec
Confidence 478776653
No 194
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=52.20 E-value=85 Score=24.76 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=26.6
Q ss_pred CchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 15 SYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 15 SyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
+.|..+++.+++. .|.++.++.-++.+.+++ ..+|.|||
T Consensus 11 GnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l-------~~~d~vi~ 52 (137)
T 2fz5_A 11 GNTEAMANEIEAAVKAAGADVESVRFEDTNVDDV-------ASKDVILL 52 (137)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHH-------HTCSEEEE
T ss_pred ChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHH-------hcCCEEEE
Confidence 3456677766553 478888887666555555 35899999
No 195
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=52.19 E-value=15 Score=35.32 Aligned_cols=80 Identities=13% Similarity=0.129 Sum_probs=45.5
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.++|||||........|-..|+. .|..+ +... +.++....+ +...+|.||+== .-|. ..-+.++.++-...
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~-~g~~v--~~a~--~~~~al~~~-~~~~~dlvllD~--~mp~-~~G~~~~~~lr~~~ 75 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLED-SNFKV--LQAL--NGLQGLQIF-ESEQPDLVICDL--RMPQ-IDGLELIRRIRQTA 75 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHH-TTEEE--EECS--SHHHHHHHH-HHSCCSEEEECC--CSSS-SCTHHHHHHHHHTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHh-CCCEE--EEEC--CHHHHHHHH-hhCCCCEEEEcC--CCCC-CCHHHHHHHHHhhC
Confidence 46899999755555567777776 67654 3332 244554433 336799998821 1121 22344455544445
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
.++||+-+-
T Consensus 76 ~~~pii~lt 84 (394)
T 3eq2_A 76 SETPIIVLS 84 (394)
T ss_dssp CCCCEEEC-
T ss_pred CCCcEEEEE
Confidence 689988654
No 196
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=51.75 E-value=15 Score=35.98 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=45.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
|+|||||........+-..|.. .|..+....+ .++....+ +...+|.||+-- .-|. ..-+.++.++-....
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~-~g~~v~~a~~----~~eal~~l-~~~~~DlvllD~--~mp~-~dG~ell~~lr~~~~ 71 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSM-KGIKVESAER----GKEAYKLL-SEKHFNVVLLDL--LLPD-VNGLEILKWIKERSP 71 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHH-HTCEEEEESS----HHHHHHHH-HHSCCSEEEEES--BCSS-SBHHHHHHHHHHHCT
T ss_pred CEEEEEECCHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHH-HhCCCCEEEEeC--CCCC-CCHHHHHHHHHhhCC
Confidence 7899999865566667777766 5876654332 34444433 236799988821 1121 122344444443455
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
++||+-+.
T Consensus 72 ~~pvIvlT 79 (387)
T 1ny5_A 72 ETEVIVIT 79 (387)
T ss_dssp TSEEEEEE
T ss_pred CCcEEEEe
Confidence 88987764
No 197
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=51.55 E-value=71 Score=25.39 Aligned_cols=82 Identities=10% Similarity=0.106 Sum_probs=44.3
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcc------cCCcCEEEECCCCCCCCCCCchhHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYE------ENAFDNIVISPGPGSPACPEDIGICL 77 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e------~~~fDgIVISpGPGsp~~~~d~gi~~ 77 (392)
.|++||||........+-..|.. .|...+|..... .++...++.+ ...+|.||+--. -|. ..-+.++
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~-~~~~~~v~~~~~--~~~al~~l~~~~~~~~~~~~dlillD~~--lp~-~~g~~l~- 80 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKT-STIDHELIILRD--GLAAMAFLQQQGEYENSPRPNLILLDLN--LPK-KDGREVL- 80 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHS-CCSCEEEEEECS--HHHHHHHHTTCGGGTTCCCCSEEEECSC--CSS-SCHHHHH-
T ss_pred CCeEEEEECCHHHHHHHHHHHHh-cCCCccEEEeCC--HHHHHHHHHhccccccCCCCCEEEEeCC--CCC-CcHHHHH-
Confidence 47899999755555556666665 565433433332 3555555522 136899998311 121 1123333
Q ss_pred HHHHHc---CCCCEEEEc
Q 046651 78 RVLLEC---WDVPILGVC 92 (392)
Q Consensus 78 ~ll~~~---~~iPILGVC 92 (392)
+.|++. ..+||+-+.
T Consensus 81 ~~l~~~~~~~~~piiils 98 (149)
T 1i3c_A 81 AEIKQNPDLKRIPVVVLT 98 (149)
T ss_dssp HHHHHCTTTTTSCEEEEE
T ss_pred HHHHhCcCcCCCeEEEEE
Confidence 344442 478988764
No 198
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=51.51 E-value=51 Score=30.64 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=49.0
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEE-------eCCCCCHHHHHhhhc------ccCCcCEEEECCCCCCCCCCCc
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVV-------RNDEWTWRDICRYLY------EENAFDNIVISPGPGSPACPED 72 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV-------~nd~~~~eel~~~l~------e~~~fDgIVISpGPGsp~~~~d 72 (392)
++.|+|-+-+ .-.+++.|.+....+..+. ++-..+++++..++. +...+|.|||+ |...
T Consensus 14 ~IGv~DsG~G-gltv~~~i~~~~P~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~ivia-------CNTa 85 (273)
T 2oho_A 14 PIGFLDSGVG-GLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQNVKMIVFA-------CNTA 85 (273)
T ss_dssp CEEEEESSST-THHHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEEC-------CHHH
T ss_pred cEEEEeCCCc-HHHHHHHHHHHCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-------CchH
Confidence 5999997644 3568888887765443333 222234666544433 44578999994 3333
Q ss_pred hhHHHHHHHHcCCCCEEEEcH
Q 046651 73 IGICLRVLLECWDVPILGVCL 93 (392)
Q Consensus 73 ~gi~~~ll~~~~~iPILGVCL 93 (392)
-....+.+++.-++||+||.-
T Consensus 86 s~~~l~~lr~~~~iPvigi~e 106 (273)
T 2oho_A 86 TAVAWEEVKAALDIPVLGVVL 106 (273)
T ss_dssp HHHHHHHHHHHCSSCEEESHH
T ss_pred hHHHHHHHHHhCCCCEEeccH
Confidence 333356666644999999853
No 199
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=51.24 E-value=55 Score=29.97 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=47.2
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEE-------eCCCCCHHHHHhhhc------ccCCcCEEEECCCCCCCCCCC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVV-------RNDEWTWRDICRYLY------EENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV-------~nd~~~~eel~~~l~------e~~~fDgIVISpGPGsp~~~~ 71 (392)
|+|.|+|-+=. ...+.+.+.+.+..+-.+. ++-..+++++..++. +...+|.|||+ |..
T Consensus 1 ~~IgvfDSG~G-gltv~~~l~~~~P~~~~iy~~D~~~~pyG~~s~~~i~~~~~~~~~~L~~~g~d~ivia-------CnT 72 (254)
T 1b73_A 1 MKIGIFDSGVG-GLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECAGFLKDKGVDIIVVA-------CNT 72 (254)
T ss_dssp CEEEEEESSSG-GGTHHHHHHHHSTTCEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEEC-------CHH
T ss_pred CcEEEEECCcc-HHHHHHHHHHhCCCCcEEEeecCCCCCCCcCCHHHHHHHHHHHHHHHHHCCCCEEEEe-------Cch
Confidence 78999997533 2247777777666554332 222334555544332 34679999994 222
Q ss_pred chhHHHHHHHHcCCCCEEEEcH
Q 046651 72 DIGICLRVLLECWDVPILGVCL 93 (392)
Q Consensus 72 d~gi~~~ll~~~~~iPILGVCL 93 (392)
+-....+.+++.-++||+||.-
T Consensus 73 a~~~~~~~lr~~~~iPvigi~e 94 (254)
T 1b73_A 73 ASAYALERLKKEINVPVFGVIE 94 (254)
T ss_dssp HHTTSHHHHHHHSSSCEEESHH
T ss_pred hhHHHHHHHHHhCCCCEEeeeH
Confidence 2111244555544999999864
No 200
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=50.91 E-value=16 Score=39.20 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=48.2
Q ss_pred cEEEEEECCC-Cc-------hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC--Cc-h
Q 046651 5 VRTLLIDNYD-SY-------TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP--ED-I 73 (392)
Q Consensus 5 ~r~LlIDnyD-Sy-------T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~--~d-~ 73 (392)
|||||||... .- ...|...|+. .|.+++...+ -++....+-+...+|.||+.=. -|... .+ +
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~-~g~~v~~a~~----g~~al~~~~~~~~~d~vilDi~--lp~~~~~~~G~ 73 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQ-QNVTVIKSTS----FDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVR 73 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHHTTTCCCSEEEEECC--CCSHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHh-CCCEEEEECC----HHHHHHHHhcCCCCcEEEEeCC--CCcccccccHH
Confidence 7999999754 34 4567778877 6887766543 3455554433235999999522 23210 01 1
Q ss_pred hHHHHHHHH-cCCCCEEEEcHH
Q 046651 74 GICLRVLLE-CWDVPILGVCLG 94 (392)
Q Consensus 74 gi~~~ll~~-~~~iPILGVCLG 94 (392)
.+| +.|++ ..++||+-+.-=
T Consensus 74 ~ll-~~iR~~~~~iPIi~lTa~ 94 (755)
T 2vyc_A 74 QLI-GKLHERQQNVPVFLLGDR 94 (755)
T ss_dssp HHH-HHHHHHSTTCCEEEEECH
T ss_pred HHH-HHHHHhCCCCCEEEEecC
Confidence 233 33444 348999887654
No 201
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=50.73 E-value=8.2 Score=35.86 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=41.0
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCC--CeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGV--PPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~--~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
||++||-|..+... ..+.+..+... ...+...+ +. . ...+|.||..||-|+ .++.++.
T Consensus 1 mki~ii~Np~~~~~-~~~~~~~i~~~l~~~~~~~~~----~~-~-----~~~~D~vv~~GGDGT---------ll~~a~~ 60 (258)
T 1yt5_A 1 MKIAILYREEREKE-GEFLKEKISKEHEVIEFGEAN----AP-G-----RVTADLIVVVGGDGT---------VLKAAKK 60 (258)
T ss_dssp CEEEEEECGGGHHH-HHHHHHHHTTTSEEEEEEESS----SC-S-----CBCCSEEEEEECHHH---------HHHHHTT
T ss_pred CEEEEEEeCCCchH-HHHHHHHHHHHhcCCceeccc----cc-c-----cCCCCEEEEEeCcHH---------HHHHHHH
Confidence 89999998766653 33333332211 11121111 11 1 146899999999876 3444444
Q ss_pred cC-CCCEEEEcHHH
Q 046651 83 CW-DVPILGVCLGH 95 (392)
Q Consensus 83 ~~-~iPILGVCLGh 95 (392)
.. ++|+|||=.|.
T Consensus 61 ~~~~~PilGIn~G~ 74 (258)
T 1yt5_A 61 AADGTPMVGFKAGR 74 (258)
T ss_dssp BCTTCEEEEEESSS
T ss_pred hCCCCCEEEEECCC
Confidence 22 89999998874
No 202
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=50.52 E-value=20 Score=30.65 Aligned_cols=78 Identities=14% Similarity=0.168 Sum_probs=42.2
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeE-EEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPV-VVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pv-VV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
+|+||||........+.+.|.. .|..++ ...+ .++....+ +...+|.||+--. -|. ...+.++.. +++.
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~----~~~al~~~-~~~~~dlvi~D~~--~p~-~~g~~~~~~-l~~~ 83 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLRE-EGYEIVGEAGD----GQEAVELA-ELHKPDLVIMDVK--MPR-RDGIDAASE-IASK 83 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-TTCEEEEEESS----HHHHHHHH-HHHCCSEEEEESS--CSS-SCHHHHHHH-HHHT
T ss_pred ccEEEEECCHHHHHHHHHHHHH-CCCEEEEEeCC----HHHHHHHH-hhcCCCEEEEeCC--CCC-CChHHHHHH-HHhc
Confidence 5899999765555667777776 687665 3322 33443333 2246999998321 121 112333333 3443
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
...||+-+.
T Consensus 84 ~~~pii~lt 92 (205)
T 1s8n_A 84 RIAPIVVLT 92 (205)
T ss_dssp TCSCEEEEE
T ss_pred CCCCEEEEe
Confidence 345776654
No 203
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=50.41 E-value=15 Score=32.82 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=36.5
Q ss_pred ccEEEEEEC---------CCCchHHHHHHHHHh--CCCCeEE--EeCCCCCHHHHHhhhcc---cCCcCEEEECCCCCC
Q 046651 4 FVRTLLIDN---------YDSYTYNIYQELSTI--NGVPPVV--VRNDEWTWRDICRYLYE---ENAFDNIVISPGPGS 66 (392)
Q Consensus 4 ~~r~LlIDn---------yDSyT~nl~q~L~~v--~G~~pvV--V~nd~~~~eel~~~l~e---~~~fDgIVISpGPGs 66 (392)
.||+.||-- +|++.+-|.++|.+. .|.+++. +-.|+ .+++...|-+ ...+|.||++||-|-
T Consensus 14 ~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVIttGGtg~ 90 (189)
T 1jlj_A 14 QIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE--IEEIKETLIDWCDEKELNLILTTGGTGF 90 (189)
T ss_dssp CCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC--HHHHHHHHHHHhhcCCCCEEEEcCCCCC
Confidence 478877743 456667788888762 5777643 22333 3444333322 126899999988653
No 204
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=50.20 E-value=17 Score=29.11 Aligned_cols=81 Identities=10% Similarity=0.091 Sum_probs=39.6
Q ss_pred cEEEEEECCCCchHHHHHHHHH-hCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 5 VRTLLIDNYDSYTYNIYQELST-INGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~-v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
+|+||||........+...|.. ..|..++..-.+ .++....+ +...+|.||+--. -|. ...+.++.++-...
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~---~~~al~~~-~~~~~dlvllD~~--lp~-~~g~~l~~~l~~~~ 75 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADD---GINAIQIA-LKHPPNVLLTDVR--MPR-MDGIELVDNILKLY 75 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESS---HHHHHHHH-TTSCCSEEEEESC--CSS-SCHHHHHHHHHHHC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeeccc---HHHHHHHH-hcCCCCEEEEeCC--CCC-CCHHHHHHHHHhhC
Confidence 5899999754444444444432 135554312222 34444433 3356899888321 121 11233333333334
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
..+||+-+.
T Consensus 76 ~~~~ii~ls 84 (141)
T 3cu5_A 76 PDCSVIFMS 84 (141)
T ss_dssp TTCEEEEEC
T ss_pred CCCcEEEEe
Confidence 467777654
No 205
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=49.02 E-value=18 Score=29.53 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=32.8
Q ss_pred CccEEEEEECCCCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
..||+||+-....-|.-|.+.+.+. .|.++.+........++. + .+||.|+++
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~---~---~~~DvvLLg 60 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDI---M---GVYDLIILA 60 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTT---G---GGCSEEEEC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhh---c---cCCCEEEEC
Confidence 4689999988765555566555433 588888754222112222 2 469999994
No 206
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=48.83 E-value=27 Score=35.89 Aligned_cols=108 Identities=16% Similarity=0.237 Sum_probs=58.6
Q ss_pred cEEEEEECCCCchHH---HHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC--------Cch
Q 046651 5 VRTLLIDNYDSYTYN---IYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP--------EDI 73 (392)
Q Consensus 5 ~r~LlIDnyDSyT~n---l~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~--------~d~ 73 (392)
..++.||........ +.+.+++..+--++++.+- .+.++...+. +..+|+|+++.|||+.... ..+
T Consensus 269 vd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v-~t~e~a~~~~--~aGad~i~vg~g~gsi~~~~~~~g~g~p~~ 345 (511)
T 3usb_A 269 VDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNV-ATAEATKALI--EAGANVVKVGIGPGSICTTRVVAGVGVPQL 345 (511)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEE-CSHHHHHHHH--HHTCSEEEECSSCSTTCCHHHHHCCCCCHH
T ss_pred cceEEecccccchhhhhhHHHHHHHhCCCceEEeeee-ccHHHHHHHH--HhCCCEEEECCCCccccccccccCCCCCcH
Confidence 346667655444333 4444444333234343222 2345443322 2568999999999885321 122
Q ss_pred hHHHHHHHHc--CCCCEE---EEcHHHHHH-HHHhCCeeeecCCCcee
Q 046651 74 GICLRVLLEC--WDVPIL---GVCLGHQAL-GFVHGADIVHAPEPVHG 115 (392)
Q Consensus 74 gi~~~ll~~~--~~iPIL---GVCLGhQ~L-a~a~Gg~V~~apep~hG 115 (392)
....++.+.+ .++||+ ||.-+-.+. +.+.||..+-+-....+
T Consensus 346 ~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~~ 393 (511)
T 3usb_A 346 TAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAG 393 (511)
T ss_dssp HHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheecHHHhc
Confidence 2222222221 279999 887777766 77889988776544433
No 207
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=48.28 E-value=59 Score=30.59 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=49.7
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEE-------eCCCCCHHHHHhhhc------ccCCcCEEEECCCCCCCCCCCc
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVV-------RNDEWTWRDICRYLY------EENAFDNIVISPGPGSPACPED 72 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV-------~nd~~~~eel~~~l~------e~~~fDgIVISpGPGsp~~~~d 72 (392)
+|.|+|-+-+- ..+++.|.+....+..+. ++-..+++++..++. +...+|.|||+ |..+
T Consensus 26 ~IGvfDsG~Gg-ltv~~~i~~~~P~~~~iy~~D~~~~pyG~~s~~~i~~~~~~~~~~L~~~g~d~IVIA-------CNTa 97 (290)
T 2vvt_A 26 AIGLIDSGVGG-LTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKRIKMLVIA-------CNTA 97 (290)
T ss_dssp CEEEEESSSTT-HHHHHHHHHHCTTSCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEEC-------CHHH
T ss_pred cEEEEeCCCcH-HHHHHHHHHHCCCccEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-------Ccch
Confidence 59999976443 568888887665554333 232335666544432 34579999994 4333
Q ss_pred hhHHHHHHHHcCCCCEEEEcH
Q 046651 73 IGICLRVLLECWDVPILGVCL 93 (392)
Q Consensus 73 ~gi~~~ll~~~~~iPILGVCL 93 (392)
-....+.+++.-++||+||..
T Consensus 98 s~~~l~~lr~~~~iPVigiie 118 (290)
T 2vvt_A 98 TAVALEEIKAALPIPVVGVIL 118 (290)
T ss_dssp HHHHHHHHHHHCSSCEEESSH
T ss_pred hHHHHHHHHHhCCCCEEcccH
Confidence 223456666644999999764
No 208
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=48.13 E-value=18 Score=28.16 Aligned_cols=81 Identities=11% Similarity=0.125 Sum_probs=40.1
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
+|+||||........+-..|....|..++..-.+ .++...++ +...+|.|++--. -|. ...+.++.++-.. .
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~a~~~~-~~~~~dlvllD~~--l~~-~~g~~~~~~l~~~~~ 75 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYN---GQDCLQML-EEKRPDILLLDII--MPH-LDGLAVLERIRAGFE 75 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESS---HHHHHHHH-HHHCCSEEEEESC--CSS-SCHHHHHHHHHHHCS
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCC---HHHHHHHH-hcCCCCEEEEecC--CCC-CCHHHHHHHHHhcCC
Confidence 6899999754445455566665225443322222 34444433 2246899988422 121 1123334333332 2
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
...||+-+.
T Consensus 76 ~~~~ii~ls 84 (130)
T 1dz3_A 76 HQPNVIMLT 84 (130)
T ss_dssp SCCEEEEEE
T ss_pred CCCcEEEEe
Confidence 466776553
No 209
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=47.69 E-value=7.7 Score=33.52 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=30.0
Q ss_pred cEEEEEECC-CCchHHHHHHHHHhCCCC--eEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTINGVP--PVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v~G~~--pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
||++||=.- ..+|..+++.|++.++.. +.++.-++.+.+++. .+|.|||
T Consensus 2 ~kilIiY~S~tGnT~~iA~~ia~~l~~~~~v~~~~~~~~~~~~l~-------~~d~ii~ 53 (182)
T 2wc1_A 2 AKIGLFFGSDTGTTRKIAKQIKDMFDDEVMAKPLNVNRADVADFM-------AYDFLIL 53 (182)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHTTSCTTTBCCCEEGGGCCHHHHH-------HCSEEEE
T ss_pred cEEEEEEECCCchHHHHHHHHHHHhcccCceEEEEcccCCHHHHh-------hCCeEEE
Confidence 467777321 224667999998876653 444544443445554 4899999
No 210
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=47.01 E-value=8.2 Score=33.36 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=30.2
Q ss_pred cEEEEEECCCC---chHHHHHHHHHhCCCC--eEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDNYDS---YTYNIYQELSTINGVP--PVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDnyDS---yT~nl~q~L~~v~G~~--pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
||++|| |.| +|..+++.|++.++.. +.++.-++.+.+++ ..+|.|||
T Consensus 1 ~kilI~--Y~S~tGnT~~iA~~ia~~l~~~~~v~~~~~~~~~~~~l-------~~~d~iil 52 (179)
T 1yob_A 1 AKIGLF--FGSNTGKTRKVAKSIKKRFDDETMSDALNVNRVSAEDF-------AQYQFLIL 52 (179)
T ss_dssp CCEEEE--ECCSSSHHHHHHHHHHTTSCTTTBCCCEEGGGCCHHHH-------HTCSEEEE
T ss_pred CeEEEE--EECCCcHHHHHHHHHHHHhCCCCceEEEEhhhCCHHHH-------hcCCEEEE
Confidence 467776 334 4667999998876653 44555444444555 34899999
No 211
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=46.80 E-value=8.6 Score=29.31 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=41.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
|++||||........+.+.|.. .|..+..+.+ ..+....+ ....+|.|++--. -|. ...+.++ +.+++..
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~-~~~~v~~~~~----~~~~~~~~-~~~~~dlvi~D~~--l~~-~~g~~~~-~~l~~~~ 71 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEG-DGMRVFEAET----LQRGLLEA-ATRKPDLIILDLG--LPD-GDGIEFI-RDLRQWS 71 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT-TTCEEEEESS----HHHHHHHH-HHHCCSEEEEESE--ETT-EEHHHHH-HHHHTTC
T ss_pred cEEEEEeCCHHHHHHHHHHHhc-CCCEEEEeCC----HHHHHHHH-hcCCCCEEEEeCC--CCC-CcHHHHH-HHHHhCC
Confidence 6899999755555566677765 5776543332 22332222 1246898888321 111 1122333 3334445
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+|++-+.
T Consensus 72 ~~~ii~~s 79 (121)
T 1zh2_A 72 AVPVIVLS 79 (121)
T ss_dssp CCCEEEEE
T ss_pred CCcEEEEE
Confidence 78887664
No 212
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=46.07 E-value=9.4 Score=33.59 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=43.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTING-VPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G-~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
|||||||....+...+.+.|.. .| ..++..-. +.++....+ +...+|.||+--. -|. ...+.++.++-...
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~-~~~~~vv~~~~---~~~~al~~l-~~~~~dlvllD~~--lp~-~~g~~~~~~lr~~~ 73 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGA-DPELDVVGEAG---SVAEAMARV-PAARPDVAVLDVR--LPD-GNGIELCRDLLSRM 73 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHT-CTTEEEEEEES---SHHHHHHHH-HHHCCSEEEECSE--ETT-EEHHHHHHHHHHHC
T ss_pred cEEEEEcCCHHHHHHHHHHHhc-CCCcEEEEEEC---CHHHHHHHH-hhcCCCEEEEeCC--CCC-CCHHHHHHHHHHhC
Confidence 6899999765555566777765 34 44322222 234444433 2246899998311 111 11233344443335
Q ss_pred CCCCEEEEcH
Q 046651 84 WDVPILGVCL 93 (392)
Q Consensus 84 ~~iPILGVCL 93 (392)
.++||+-+.-
T Consensus 74 ~~~~ii~lt~ 83 (225)
T 3c3w_A 74 PDLRCLILTS 83 (225)
T ss_dssp TTCEEEEGGG
T ss_pred CCCcEEEEEC
Confidence 5889987753
No 213
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=45.21 E-value=9 Score=33.32 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=29.2
Q ss_pred CCCCchHHHHHH----HHHhCCCCeE---EEeCCCCCHHHHHhhhccc-C-CcCEEEECCCCC
Q 046651 12 NYDSYTYNIYQE----LSTINGVPPV---VVRNDEWTWRDICRYLYEE-N-AFDNIVISPGPG 65 (392)
Q Consensus 12 nyDSyT~nl~q~----L~~v~G~~pv---VV~nd~~~~eel~~~l~e~-~-~fDgIVISpGPG 65 (392)
-+|++.+-|.++ |.+ .|.+++ +|+ |+ .+++...|-+. . .+|-||++||-|
T Consensus 22 i~D~n~~~l~~~~~~~l~~-~G~~v~~~~iv~-Dd--~~~I~~~l~~a~~~~~DlVittGG~g 80 (167)
T 2g2c_A 22 RENKALPLLQRLMSDELQD-YSYELISEVVVP-EG--YDTVVEAIATALKQGARFIITAGGTG 80 (167)
T ss_dssp SCCCHHHHHHHHHCC-----CEEEEEEEEEEC-SS--HHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred eeccHHHHHHHhHHhHHHH-CCCEEeEEEEeC-CC--HHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 367888889999 887 687763 343 33 23333333221 2 489999998865
No 214
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=44.81 E-value=12 Score=31.92 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=29.0
Q ss_pred cEEEEEECCCC---chHHHHHHHHHhC---CCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDNYDS---YTYNIYQELSTIN---GVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDnyDS---yT~nl~q~L~~v~---G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
|+++|+ |.| .|..+++.|++.+ |+++.++.-++.+.+++ ..+|.|||
T Consensus 10 ~ki~I~--Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l-------~~~d~ii~ 62 (167)
T 1ykg_A 10 PGITII--SASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQI-------ASEKLLIV 62 (167)
T ss_dssp --CEEE--EECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGG-------GGCSEEEE
T ss_pred CeEEEE--EECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHh-------ccCCeEEE
Confidence 567776 334 4566777776543 77787776655444454 34899999
No 215
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=44.60 E-value=11 Score=32.57 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=22.9
Q ss_pred cEEEEEECC---CCchHHHHHHHHHhC---------CCCeEEEe
Q 046651 5 VRTLLIDNY---DSYTYNIYQELSTIN---------GVPPVVVR 36 (392)
Q Consensus 5 ~r~LlIDny---DSyT~nl~q~L~~v~---------G~~pvVV~ 36 (392)
||||+|... +|+|..|.+.+.+.. |.+++++.
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~d 44 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVD 44 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEEC
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEe
Confidence 799999764 378988888776542 56676664
No 216
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=44.10 E-value=24 Score=30.69 Aligned_cols=84 Identities=7% Similarity=-0.056 Sum_probs=45.2
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH-
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL- 81 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~- 81 (392)
..|||||||........+...|....|..++....+ ..+++..+ .+...+|.||+--. -|. ..-+.++.++-.
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~--~~~~~~~~-~~~~~~dlvllD~~--mp~-~~G~~~~~~lr~~ 79 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFS--ELWLEENK-PESRSIQMLVIDYS--RIS-DDVLTDYSSFKHI 79 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGG--GHHHHTTC-SGGGGCCEEEEEGG--GCC-HHHHHHHHHHHHH
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCC--cHHHHHHH-hhccCCCEEEEeCC--CCC-CCHHHHHHHHHHh
Confidence 347899999866666677777875456655433222 23333322 23357899998211 111 112333444433
Q ss_pred HcCCCCEEEEc
Q 046651 82 ECWDVPILGVC 92 (392)
Q Consensus 82 ~~~~iPILGVC 92 (392)
...++||+-+.
T Consensus 80 ~~~~~~ii~lt 90 (225)
T 3klo_A 80 SCPDAKEVIIN 90 (225)
T ss_dssp HCTTCEEEEEE
T ss_pred hCCCCcEEEEE
Confidence 34577877654
No 217
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=44.02 E-value=15 Score=31.66 Aligned_cols=82 Identities=15% Similarity=0.040 Sum_probs=41.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.||+||||....+...+.+.|....+..++..-. +.++....+ +...+|.||+--. -|. ...+.++.++-...
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~---~~~~al~~~-~~~~~dlvllD~~--lp~-~~g~~~~~~lr~~~ 77 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEAS---NGEQGIELA-ESLDPDLILLDLN--MPG-MNGLETLDKLREKS 77 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEES---SHHHHHHHH-HHHCCSEEEEETT--STT-SCHHHHHHHHHHSC
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeC---CHHHHHHHH-HhcCCCEEEEeCC--CCC-CcHHHHHHHHHHhC
Confidence 4789999975545555666665422343322222 234444433 2246899998321 121 12233344433334
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
..+||+-+.
T Consensus 78 ~~~~ii~ls 86 (215)
T 1a04_A 78 LSGRIVVFS 86 (215)
T ss_dssp CCSEEEEEE
T ss_pred CCCcEEEEE
Confidence 578887664
No 218
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=43.83 E-value=22 Score=30.20 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=43.1
Q ss_pred cEEEEEECC---CCchHHHHHHHHHhCCCCeEEEeCCCC---------------CHHHHHhhhcccCCcCEEEECCCCCC
Q 046651 5 VRTLLIDNY---DSYTYNIYQELSTINGVPPVVVRNDEW---------------TWRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 5 ~r~LlIDny---DSyT~nl~q~L~~v~G~~pvVV~nd~~---------------~~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
||||+|.-. +|+|..+.+.+.+....+ ++.-.+. .+.++...+ .++|+||| |+
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~~--~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i---~~aD~ii~----~t 71 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHTD--LIDLSEFVLPVFNGEAEQSELLKVQELKQRV---TKADAIVL----LS 71 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTCE--EEETTTSCCCCCCCCHHHHTCHHHHHHHHHH---HHCSSEEE----EE
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcce--EEeeecCCCCCCCChhhccCcHHHHHHHHHH---HHCCEEEE----Ec
Confidence 788888654 278999999998866553 3332111 122333333 56899999 67
Q ss_pred CCCCCc-hhHHHHHHHHc-----CCCCEEEEc
Q 046651 67 PACPED-IGICLRVLLEC-----WDVPILGVC 92 (392)
Q Consensus 67 p~~~~d-~gi~~~ll~~~-----~~iPILGVC 92 (392)
|.-... .+.+..+|... .++|+.-|+
T Consensus 72 P~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~ 103 (174)
T 3gfs_A 72 PEYHSGMSGALKNALDFLSSEQFKYKPVALLA 103 (174)
T ss_dssp ECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEE
T ss_pred CCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEE
Confidence 754222 24444444332 356655443
No 219
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=43.06 E-value=54 Score=25.65 Aligned_cols=81 Identities=14% Similarity=0.252 Sum_probs=42.7
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcc----cCCcCEEEECCCCCCCCCCCchhHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYE----ENAFDNIVISPGPGSPACPEDIGICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e----~~~fDgIVISpGPGsp~~~~d~gi~~~l 79 (392)
.|||||||........+-..|.. .|...+..-.+ .++....+.+ ...||.|++-- .-|. ..-+.++ +.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~-~g~~~v~~~~~---~~~al~~~~~~~~~~~~~dlvllD~--~mp~-~~G~~~~-~~ 73 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNL-EGIENIELACD---GQEAFDKVKELTSKGENYNMIFMDV--QMPK-VDGLLST-KM 73 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH-TTCCCEEEESS---HHHHHHHHHHHHHHTCCCSEEEECS--CCSS-SCHHHHH-HH
T ss_pred CceEEEEcCCHHHHHHHHHHHHH-cCCceEEEECC---HHHHHHHHHHHHhcCCCCCEEEEeC--CCCC-CChHHHH-HH
Confidence 47899999765555566677775 67653333222 2344333311 14689888821 1121 1123333 33
Q ss_pred HHH--cCCCCEEEEc
Q 046651 80 LLE--CWDVPILGVC 92 (392)
Q Consensus 80 l~~--~~~iPILGVC 92 (392)
+++ ...+||+-+.
T Consensus 74 lr~~~~~~~~ii~lt 88 (133)
T 2r25_B 74 IRRDLGYTSPIVALT 88 (133)
T ss_dssp HHHHSCCCSCEEEEE
T ss_pred HHhhcCCCCCEEEEE
Confidence 443 2367888764
No 220
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=42.78 E-value=8.2 Score=34.15 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=30.1
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHHc--CCCCEEEEcH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLEC--WDVPILGVCL 93 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~--~~iPILGVCL 93 (392)
...|.|||-||=.-|....+..-...++.+. ....|.|||+
T Consensus 83 ~~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 83 GNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp CCEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCCCCEEEEEh
Confidence 4689999999977777655555556666653 4667999995
No 221
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=42.75 E-value=40 Score=28.76 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=23.1
Q ss_pred cEEEEEECC-CCchHHHHHHHHHh----CCCCeEEEeCCC
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTI----NGVPPVVVRNDE 39 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v----~G~~pvVV~nd~ 39 (392)
||||+|-.. .++|..+.+.+.+. .|.++.++.-.+
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~ 41 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPE 41 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCC
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccc
Confidence 688888543 34677777777553 477777776544
No 222
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=42.38 E-value=42 Score=29.39 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=24.2
Q ss_pred cEEEEEECC---CCchHHHHHHHHHhC--CCCeEEEeC
Q 046651 5 VRTLLIDNY---DSYTYNIYQELSTIN--GVPPVVVRN 37 (392)
Q Consensus 5 ~r~LlIDny---DSyT~nl~q~L~~v~--G~~pvVV~n 37 (392)
||||+|.-. +|+|..|.+.+.+.. |.+++++.-
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~~~g~~v~~~dL 38 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNLSKEHTVSTLDL 38 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHSCTTSEEEEEET
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHhcCCCeEEEEEc
Confidence 899999764 577888888887653 667766643
No 223
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=42.35 E-value=6.8 Score=35.94 Aligned_cols=47 Identities=28% Similarity=0.399 Sum_probs=29.7
Q ss_pred CCcCEEEECCCCCCCCCCCchhHH-HHHHHHcCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGIC-LRVLLECWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~-~~ll~~~~~iPILGVCLGhQ~La~a 101 (392)
.+.|.|.++-|||+.+.. .+|+. .+-|....++|+.||+- +++++..
T Consensus 55 ~dld~Iav~~GPGsfTgl-Rig~~~AkgLa~~~~iPl~gVst-L~a~a~~ 102 (213)
T 3r6m_A 55 QDLDALAFGRGPGSFTGV-RIGIGIAQGLAFGAELPMIGVST-LAAMAQA 102 (213)
T ss_dssp TTCSEEEEEEESSCHHHH-HHHHHHHHHHHHHTTCCEEEEEH-HHHHHHH
T ss_pred HHccEEEEecCCCchhhH-HHHHHHHHHHHHHhCCCEEEEcC-HHHHHHh
Confidence 468999999999997521 12221 12233335999999983 4555543
No 224
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=41.09 E-value=26 Score=32.47 Aligned_cols=73 Identities=16% Similarity=0.039 Sum_probs=45.7
Q ss_pred ccEEEEEECC---CCchHHHHHHHHHh---CCCCeEEEeCCCCC-----------HHHHHhhhcccCCcCEEEECCCCCC
Q 046651 4 FVRTLLIDNY---DSYTYNIYQELSTI---NGVPPVVVRNDEWT-----------WRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 4 ~~r~LlIDny---DSyT~nl~q~L~~v---~G~~pvVV~nd~~~-----------~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
.||||+|.-. .|+|..|.+.+.+. .|.+++++.-.+.. +.++...+ .+.|+||| ++
T Consensus 34 ~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i---~~AD~iI~----~s 106 (247)
T 2q62_A 34 RPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELS---IWSEGQVW----VS 106 (247)
T ss_dssp CCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHH---HHCSEEEE----EE
T ss_pred CCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHH---HHCCEEEE----Ee
Confidence 4789999754 47788777766542 57887776544332 34444444 56899999 67
Q ss_pred CCCCC-chhHHHHHHHHc
Q 046651 67 PACPE-DIGICLRVLLEC 83 (392)
Q Consensus 67 p~~~~-d~gi~~~ll~~~ 83 (392)
|.--. -.+.+..+|...
T Consensus 107 P~Yn~sipa~LKn~iD~l 124 (247)
T 2q62_A 107 PERHGAMTGIMKAQIDWI 124 (247)
T ss_dssp ECSSSSCCHHHHHHHHTS
T ss_pred CCCCCCccHHHHHHHHHh
Confidence 75432 235566666553
No 225
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=41.09 E-value=1.1e+02 Score=27.87 Aligned_cols=81 Identities=11% Similarity=0.222 Sum_probs=47.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEE-------eCCCCCHHHHHhhhc------ccCCcCEEEECCCCCCCCCCC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVV-------RNDEWTWRDICRYLY------EENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV-------~nd~~~~eel~~~l~------e~~~fDgIVISpGPGsp~~~~ 71 (392)
|+|.|.|-+=. -..+.+.|.+....+..+. ++...+|+++..++. +...+|.|||+ |..
T Consensus 1 ~~igvfDSG~G-Gltv~~~l~~~lP~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~ivia-------CNT 72 (255)
T 2jfz_A 1 MKIGVFDSGVG-GFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVA-------CNT 72 (255)
T ss_dssp CEEEEEESSST-THHHHHHHHHTTCCSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHGGGCCSCEEEC-------CHH
T ss_pred CcEEEEECCcc-HHHHHHHHHHHCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-------Cch
Confidence 68899996522 2357778877665444343 222335776655443 34578999994 322
Q ss_pred chhHHHHHHHHcCCCCEEEEcH
Q 046651 72 DIGICLRVLLECWDVPILGVCL 93 (392)
Q Consensus 72 d~gi~~~ll~~~~~iPILGVCL 93 (392)
.-....+.+++.-++||+||..
T Consensus 73 a~~~~~~~lr~~~~iPvigii~ 94 (255)
T 2jfz_A 73 ASALALEEMQKYSKIPIVGVIE 94 (255)
T ss_dssp HHHHTHHHHHHHCSSCEECSSH
T ss_pred hhHHHHHHHHHhCCCCEEeeeH
Confidence 2212345566644999999643
No 226
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=40.64 E-value=49 Score=31.00 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=48.4
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCC-------CCHHHHHhhhc------ccCCcCEEEECCCCCCCCCCCc
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDE-------WTWRDICRYLY------EENAFDNIVISPGPGSPACPED 72 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~-------~~~eel~~~l~------e~~~fDgIVISpGPGsp~~~~d 72 (392)
.|++.|-+=. -..+++.|.+....+-.+.-.|. .+|+++..++. +...+|.|||+ |...
T Consensus 9 pIgvfDSGvG-GLtv~~~i~~~lp~~~~iy~~D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~~~iVIA-------CNTa 80 (268)
T 3out_A 9 PIGVFDSGIG-GLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIA-------CNTI 80 (268)
T ss_dssp CEEEEESSST-THHHHHHHHHHCTTCCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEEC-------CHHH
T ss_pred cEEEEECCCC-hHHHHHHHHHHCCCCcEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-------CCCh
Confidence 4899996422 23456666665544333333444 56887766554 34678999993 4333
Q ss_pred hhHHHHHHHHcC-CCCEEEEc
Q 046651 73 IGICLRVLLECW-DVPILGVC 92 (392)
Q Consensus 73 ~gi~~~ll~~~~-~iPILGVC 92 (392)
-...++.|++.- ++||+||.
T Consensus 81 ~~~al~~lr~~~~~iPvigii 101 (268)
T 3out_A 81 SAIAKDIVQEIAKAIPVIDVI 101 (268)
T ss_dssp HHHHHHHHHHHHTTSCEEEHH
T ss_pred HHHHHHHHHHhcCCCCEEecc
Confidence 334556677654 89999973
No 227
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=39.40 E-value=37 Score=28.98 Aligned_cols=34 Identities=9% Similarity=-0.054 Sum_probs=22.6
Q ss_pred cEEEEEECC----CCchHHHHHHHHHh---CC--CCeEEEeCC
Q 046651 5 VRTLLIDNY----DSYTYNIYQELSTI---NG--VPPVVVRND 38 (392)
Q Consensus 5 ~r~LlIDny----DSyT~nl~q~L~~v---~G--~~pvVV~nd 38 (392)
||||+|... +|+|..|.+.+.+. .| .+++++.-.
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 689999754 27788777766543 23 677777543
No 228
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=39.27 E-value=11 Score=34.62 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=28.5
Q ss_pred CcCEEEECCCCCCCCCCCchhHH-HHHHHHcCCCCEEEEcHHHHHHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGIC-LRVLLECWDVPILGVCLGHQALGF 100 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~-~~ll~~~~~iPILGVCLGhQ~La~ 100 (392)
+.|.|+++-|||+.+.. .+++. .+-|....++|+.||+- +++++.
T Consensus 55 did~Iav~~GPGsftgl-Rig~~~ak~la~~~~~Pl~~V~~-l~a~a~ 100 (231)
T 2gel_A 55 EIDALAFGRGPGSFTGV-RIGIGIAQGLALGANLPMIGVST-LATMAQ 100 (231)
T ss_dssp GCSEEEEECCSSCHHHH-HHHHHHHHHHHHTTTCCEEEECH-HHHHHH
T ss_pred HCCEEEEEcCCChhHhH-HHHHHHHHHHHHHcCCCEEEecc-HHHHHH
Confidence 57999999999998631 22221 12233345999999994 344443
No 229
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=39.02 E-value=97 Score=29.76 Aligned_cols=59 Identities=10% Similarity=0.030 Sum_probs=36.8
Q ss_pred ccEEEEEECC-CCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC
Q 046651 4 FVRTLLIDNY-DSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC 69 (392)
Q Consensus 4 ~~r~LlIDny-DSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~ 69 (392)
.|+++||-.- .++|..+++.+++. .|.++.++.-.+....++...+ .++|+||| |+|.-
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l---~~~D~iii----gsP~y 318 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHT---YDSGAVAF----ASPTL 318 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHH---HTCSEEEE----ECCCB
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHH---HhCCEEEE----EcCcc
Confidence 4788887532 23466677777654 4677777766555455443333 56999999 56643
No 230
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=39.02 E-value=67 Score=29.81 Aligned_cols=76 Identities=13% Similarity=0.042 Sum_probs=45.5
Q ss_pred cEEEEEECCCCc--------hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHH
Q 046651 5 VRTLLIDNYDSY--------TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGIC 76 (392)
Q Consensus 5 ~r~LlIDnyDSy--------T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~ 76 (392)
|||+||--+.|- ...+++.|.+ .|.+++++..++..+..+.. ..+|.|++.-.. ... +| +..
T Consensus 14 ~~v~vl~gg~s~E~~vsl~s~~~v~~al~~-~g~~v~~i~~~~~~~~~l~~-----~~~D~v~~~~hg-~~g--e~-~~~ 83 (317)
T 4eg0_A 14 GKVAVLFGGESAEREVSLTSGRLVLQGLRD-AGIDAHPFDPAERPLSALKD-----EGFVRAFNALHG-GYG--EN-GQI 83 (317)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEECTTTSCTTHHHH-----TTCCEEEECCCS-GGG--TS-SHH
T ss_pred ceEEEEECCCCCcceeeHHHHHHHHHHHHH-CCCEEEEEeCCCchHHHhhh-----cCCCEEEEcCCC-CCC--ch-HHH
Confidence 679999876653 2457788887 79999888754433344433 578988874322 111 12 223
Q ss_pred HHHHHHcCCCCEEEE
Q 046651 77 LRVLLECWDVPILGV 91 (392)
Q Consensus 77 ~~ll~~~~~iPILGV 91 (392)
..+++.. ++|++|-
T Consensus 84 ~~~le~~-gip~~g~ 97 (317)
T 4eg0_A 84 QGALDFY-GIRYTGS 97 (317)
T ss_dssp HHHHHHH-TCEESSC
T ss_pred HHHHHHc-CCCeeCc
Confidence 3444444 7777653
No 231
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=38.78 E-value=32 Score=28.12 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=31.8
Q ss_pred cEEEEEECC-CCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccC-CcCEEEE
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEEN-AFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~-~fDgIVI 60 (392)
||++||=.- ...|..+++.|++. .|.++.++.-++.+.+++ . .+|.|||
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l-------~~~~d~ii~ 55 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENL-------ADGYDAVLF 55 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTT-------TTTCSEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHh-------cccCCEEEE
Confidence 577777321 23466677777654 477788887766544454 4 6999999
No 232
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=38.67 E-value=27 Score=28.47 Aligned_cols=49 Identities=10% Similarity=0.067 Sum_probs=29.8
Q ss_pred cEEEEEECC-CCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCC-cCEEEE
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENA-FDNIVI 60 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~-fDgIVI 60 (392)
||++||=.- ...|..+++.|++. .|.++.++.-++.+.+++ .. +|.|||
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l-------~~~~d~ii~ 54 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGL-------FEGFDLVLL 54 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTT-------TTTCSEEEE
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHh-------cCcCCEEEE
Confidence 788887321 23466677766553 377777776544333332 56 899999
No 233
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=38.11 E-value=30 Score=33.03 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=52.5
Q ss_pred EEEEEECCCCch---H----HHHHHHHHhCCCCeEEEeCCCCC-HHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHH
Q 046651 6 RTLLIDNYDSYT---Y----NIYQELSTINGVPPVVVRNDEWT-WRDICRYLYEENAFDNIVISPGPGSPACPEDIGICL 77 (392)
Q Consensus 6 r~LlIDnyDSyT---~----nl~q~L~~v~G~~pvVV~nd~~~-~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~ 77 (392)
|++||-|..|-. . .+.+.|.. .|.++.++...... ..++...+ ....+|.||+.||-|+.. ...
T Consensus 26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~-~g~~~~~~~t~~~~~a~~~~~~~-~~~~~d~vvv~GGDGTv~------~v~ 97 (337)
T 2qv7_A 26 RARIIYNPTSGKEQFKRELPDALIKLEK-AGYETSAYATEKIGDATLEAERA-MHENYDVLIAAGGDGTLN------EVV 97 (337)
T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHH-TTEEEEEEECCSTTHHHHHHHHH-TTTTCSEEEEEECHHHHH------HHH
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHHHH-cCCeEEEEEecCcchHHHHHHHH-hhcCCCEEEEEcCchHHH------HHH
Confidence 589999976642 1 34455554 68888776654431 22222211 125689999999988742 122
Q ss_pred HHHHH-cCCCCEEEEcHHHH-HHHHHhC
Q 046651 78 RVLLE-CWDVPILGVCLGHQ-ALGFVHG 103 (392)
Q Consensus 78 ~ll~~-~~~iPILGVCLGhQ-~La~a~G 103 (392)
+.+.+ ..++|+.+|=+|-- .|+..+|
T Consensus 98 ~~l~~~~~~~pl~iIP~GT~N~lAr~Lg 125 (337)
T 2qv7_A 98 NGIAEKPNRPKLGVIPMGTVNDFGRALH 125 (337)
T ss_dssp HHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred HHHHhCCCCCcEEEecCCcHhHHHHHcC
Confidence 22311 23789998877754 4555554
No 234
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=38.01 E-value=56 Score=28.07 Aligned_cols=34 Identities=12% Similarity=-0.034 Sum_probs=23.2
Q ss_pred CccEEEEEECC-CCchHHHHHHHHHhCCCCeEEEe
Q 046651 3 EFVRTLLIDNY-DSYTYNIYQELSTINGVPPVVVR 36 (392)
Q Consensus 3 ~~~r~LlIDny-DSyT~nl~q~L~~v~G~~pvVV~ 36 (392)
..|+||||=.- ...|..+++.|++..|.+..-|.
T Consensus 12 ~~mkilIvY~S~tGnT~~vA~~Ia~~l~~d~~~I~ 46 (171)
T 4ici_A 12 SNSKILVAYFSATGTTARAAEKLGAAVGGDLYPIA 46 (171)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCeEEEe
Confidence 35889988432 22467799999988888765543
No 235
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=37.82 E-value=54 Score=28.06 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=42.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
||+||||........+.+.|.. .| . |.... +.++....+ ..+|.||+--. -|. ...+.++.++-....
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~-~~-~--v~~~~--~~~~al~~~---~~~dlvllD~~--lp~-~~g~~~~~~lr~~~~ 70 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQ-LG-R--VKTFL--TGEDFLNDE---EAFHVVVLDVM--LPD-YSGYEICRMIKETRP 70 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTT-TE-E--EEEES--SHHHHHHCC---SCCSEEEEESB--CSS-SBHHHHHHHHHHHCT
T ss_pred ceEEEEeCCHHHHHHHHHHHHh-CC-C--EEEEC--CHHHHHHhc---CCCCEEEEeCC--CCC-CCHHHHHHHHHhcCC
Confidence 5799999755455556666665 45 3 32222 245555544 57899888321 121 122344444433345
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
++||+-+.
T Consensus 71 ~~~ii~lt 78 (220)
T 1p2f_A 71 ETWVILLT 78 (220)
T ss_dssp TSEEEEEE
T ss_pred CCcEEEEE
Confidence 88988775
No 236
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=37.78 E-value=2.2e+02 Score=26.08 Aligned_cols=81 Identities=14% Similarity=0.221 Sum_probs=48.3
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEE-e------CCCCCHHHHHhhhc------ccCCcCEEEECCCCCCCCCCC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVV-R------NDEWTWRDICRYLY------EENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV-~------nd~~~~eel~~~l~------e~~~fDgIVISpGPGsp~~~~ 71 (392)
++|+|+|-+=. -..+++.|.+.+..+..+. . +-..+++++..++. +...+|.|||+ |..
T Consensus 4 ~~IgvfDSGvG-Gltv~~~i~~~lP~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~ivia-------CNT 75 (267)
T 2gzm_A 4 RAIGVIDSGVG-GLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMTEHLLDLNIKMLVIA-------CNT 75 (267)
T ss_dssp SCEEEEESSST-THHHHHHHHHHCTTSCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEEC-------CHH
T ss_pred CcEEEEeCCcc-HHHHHHHHHHHCCCCCEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-------Cch
Confidence 47999997522 3456777777665443333 2 21234666654443 34578999994 333
Q ss_pred chhHHHHHHHHcCCCCEEEEcH
Q 046651 72 DIGICLRVLLECWDVPILGVCL 93 (392)
Q Consensus 72 d~gi~~~ll~~~~~iPILGVCL 93 (392)
.-....+.+++.-++||+||.-
T Consensus 76 as~~~l~~lr~~~~iPvigi~e 97 (267)
T 2gzm_A 76 ATAVVLEEMQKQLPIPVVGVIH 97 (267)
T ss_dssp HHHHHHHHHHHHCSSCEEESHH
T ss_pred hhHHHHHHHHHhCCCCEEeecH
Confidence 3323456666644999999753
No 237
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=37.61 E-value=1e+02 Score=28.63 Aligned_cols=81 Identities=12% Similarity=0.245 Sum_probs=47.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEE-------eCCCCCHHHHHhhhc------ccCCcCEEEECCCCCCCCCCC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVV-------RNDEWTWRDICRYLY------EENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV-------~nd~~~~eel~~~l~------e~~~fDgIVISpGPGsp~~~~ 71 (392)
++|.|+|-+=. -..+++.+.+.+..+-.+. ++-..+++++..++. +...+|.|||+ |..
T Consensus 8 ~~IgvfDSGvG-Gltv~~~i~~~lP~~~~iy~~D~~~~PyG~~s~~~i~~~~~~~~~~L~~~g~d~IViA-------CNT 79 (276)
T 2dwu_A 8 SVIGVLDSGVG-GLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMVEFLKQFPLKALVVA-------CNT 79 (276)
T ss_dssp CEEEEEESSST-THHHHHHHHHHCTTSCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHTTSCEEEEEEC-------CHH
T ss_pred CeEEEEeCCcc-hHHHHHHHHHhCCCCcEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-------CCc
Confidence 47999997522 2346677777665443332 332334666544432 34579999994 333
Q ss_pred chhHHHHHHHHcCCCCEEEEcH
Q 046651 72 DIGICLRVLLECWDVPILGVCL 93 (392)
Q Consensus 72 d~gi~~~ll~~~~~iPILGVCL 93 (392)
.-....+.+++.-++||+||..
T Consensus 80 as~~~l~~lr~~~~iPVigiie 101 (276)
T 2dwu_A 80 AAAATLAALQEALSIPVIGVIH 101 (276)
T ss_dssp HHHHHHHHHHHHCSSCEEESHH
T ss_pred HHHHHHHHHHHHCCCCEEeccH
Confidence 3223456666644899999753
No 238
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=37.19 E-value=43 Score=29.39 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=23.8
Q ss_pred cEEEEEECC----CCchHHHHHHHHHhC-----CCCeEEEeC
Q 046651 5 VRTLLIDNY----DSYTYNIYQELSTIN-----GVPPVVVRN 37 (392)
Q Consensus 5 ~r~LlIDny----DSyT~nl~q~L~~v~-----G~~pvVV~n 37 (392)
||||+|.-. .|+|..|.+.+.+.. |.+++++.-
T Consensus 2 mkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL 43 (212)
T 3r6w_A 2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREV 43 (212)
T ss_dssp CCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 789999764 477888777765543 788887754
No 239
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=36.69 E-value=2.5e+02 Score=25.73 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=58.7
Q ss_pred HHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECC-CCCCCCCCCchhHHHHHHHH-cCCCCEEEEcHHH--
Q 046651 20 IYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISP-GPGSPACPEDIGICLRVLLE-CWDVPILGVCLGH-- 95 (392)
Q Consensus 20 l~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISp-GPGsp~~~~d~gi~~~ll~~-~~~iPILGVCLGh-- 95 (392)
|.+.|+. .|++++++..|+.....-...| .+||.||+-+ ..+..- +-....++.+. ..+.+++||=-|+
T Consensus 37 i~~~L~~-~gf~V~~~t~dd~~~~~~~~~L---~~~DvvV~~~~~~~~~l---~~~~~~al~~~V~~GgG~vgiH~a~~~ 109 (252)
T 1t0b_A 37 IASYLAE-AGFDAATAVLDEPEHGLTDEVL---DRCDVLVWWGHIAHDEV---KDEVVERVHRRVLEGMGLIVLHSGHFS 109 (252)
T ss_dssp HHHHHHH-TTCEEEEEESSSGGGGCCHHHH---HTCSEEEEECSSCGGGS---CHHHHHHHHHHHHTTCEEEEEGGGGGS
T ss_pred HHHHHhh-CCcEEEEEeccCccccCCHhHH---hcCCEEEEecCCCCCcC---CHHHHHHHHHHHHcCCCEEEEcccCCc
Confidence 3566776 7999988775543211000112 5799999931 011111 11222222222 2489999995543
Q ss_pred HHHHHHhCCeeeecCCCceeceeE--EEecCCcccccCCCCCCcceEEE
Q 046651 96 QALGFVHGADIVHAPEPVHGRLSE--IVHNGDRLFHDIPSGQNSGFKVV 142 (392)
Q Consensus 96 Q~La~a~Gg~V~~apep~hG~~s~--i~h~g~~LF~~ips~~~s~f~Vv 142 (392)
+......|+.-. .+....|.... +....+++.+++|.. |.+.
T Consensus 110 ~~y~~llGg~f~-~~~~~~~~~~~v~v~~~~HPit~gl~~~----f~~~ 153 (252)
T 1t0b_A 110 KIFKKLMGTTCN-LKWREADEKERLWVVAPGHPIVEGIGPY----IELE 153 (252)
T ss_dssp HHHHHHHCSCCC-CEEEEEEEEEEEEESCTTSGGGTTCCSE----EEEE
T ss_pred HHHHhhhCCccc-CCCccCCceEEEEECCCCChhhcCCCCC----cEec
Confidence 446667888742 11101122222 334578999999876 7665
No 240
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=35.92 E-value=30 Score=33.66 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=44.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+||||||........+-+.|.. .|..+....+ .++....+ +...||.|++-= .-|. ..-+.++.++-....
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~----~~eal~~l-~~~~~DlvllDi--~mP~-~dG~ell~~lr~~~~ 71 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEE-EGYHPDTAKT----LREAEKKI-KELFFPVIVLDV--WMPD-GDGVNFIDFIKENSP 71 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHBCCSEEEEES--EETT-EETTTHHHHHHHHCT
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-cCCEEEEECC----HHHHHHHH-HhCCCCEEEEeC--CCCC-CCHHHHHHHHHhhCC
Confidence 5899999755555667777776 6877644332 34444433 235799888710 0011 112344444444456
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
++||+-+-
T Consensus 72 ~~pvI~lT 79 (368)
T 3dzd_A 72 DSVVIVIT 79 (368)
T ss_dssp TCEEEEEE
T ss_pred CCeEEEEe
Confidence 88887665
No 241
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=35.04 E-value=1e+02 Score=29.25 Aligned_cols=54 Identities=17% Similarity=0.078 Sum_probs=35.6
Q ss_pred ccEEEEEECC-CCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 4 FVRTLLIDNY-DSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 4 ~~r~LlIDny-DSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
.|++++|-.- .++|..+++.+++. .|+++.++.-.+...+++...+ .++|+|||
T Consensus 256 ~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l---~~~d~iii 313 (404)
T 2ohh_A 256 DERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDI---LESGAIAL 313 (404)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHH---HTCSEEEE
T ss_pred CCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHH---HHCCEEEE
Confidence 4788777532 23466677777654 4677878876666566554434 57999999
No 242
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=34.87 E-value=1.1e+02 Score=27.39 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=37.4
Q ss_pred CccEEEEEE-------------CCCCchHH-HHHHHHH-----hCCCCeEEEeCCCCCHHHHHhhhccc-CC-cCEEEEC
Q 046651 3 EFVRTLLID-------------NYDSYTYN-IYQELST-----INGVPPVVVRNDEWTWRDICRYLYEE-NA-FDNIVIS 61 (392)
Q Consensus 3 ~~~r~LlID-------------nyDSyT~n-l~q~L~~-----v~G~~pvVV~nd~~~~eel~~~l~e~-~~-fDgIVIS 61 (392)
..|++|||. -|.+-|.. |.+.+.+ ..|+++.....+. --++..++-+. .. +|+|||=
T Consensus 8 ~~M~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~~~g~~l~~~QSN~--EGeLId~Ih~a~~~~~dgIIIN 85 (176)
T 2c4w_A 8 SHMKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNF--EGEIIDKIQESVGSEYEGIIIN 85 (176)
T ss_dssp CCEEEEEEECTTGGGBTTTBCGGGTSCCHHHHHHHHHHHHHHTTCCEEEEEEECSC--HHHHHHHHHHHHSSSCCEEEEE
T ss_pred CccEEEEEcCCCccccCCCCCCcCCcCCHHHHHHHHHHHhccccCCCEEEEEeeCc--HHHHHHHHHHhccCCeeEEEEC
Confidence 457788883 45566643 4444433 4677777765554 24566555443 34 9999997
Q ss_pred CCCCC
Q 046651 62 PGPGS 66 (392)
Q Consensus 62 pGPGs 66 (392)
||--+
T Consensus 86 pgAyT 90 (176)
T 2c4w_A 86 PGAFS 90 (176)
T ss_dssp CGGGG
T ss_pred cchhc
Confidence 66443
No 243
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=34.49 E-value=91 Score=28.94 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=47.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEE-E------eCCCCCHHHHHhhhc------cc-CCcCEEEECCCCCCCCCC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVV-V------RNDEWTWRDICRYLY------EE-NAFDNIVISPGPGSPACP 70 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvV-V------~nd~~~~eel~~~l~------e~-~~fDgIVISpGPGsp~~~ 70 (392)
++|.|+|-+=. -..+++.|.+.+..+-.+ + ++-..+++++..++. +. ..+|.|||. |.
T Consensus 4 ~~IgvfDSGvG-Gltv~~~i~~~lP~~~~iy~~D~~~~PyG~~s~~~i~~~~~~~~~~L~~~~g~d~iViA-------CN 75 (272)
T 1zuw_A 4 QPIGVIDSGVG-GLTVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQYTWELTNYLLENHHIKMLVIA-------CN 75 (272)
T ss_dssp SCEEEEESSST-THHHHHHHHHHSTTCCEEEEECGGGCCCSSSCHHHHHHHHHHHHHHHHHHSCCSEEEEC-------CH
T ss_pred CeEEEEeCCcc-hHHHHHHHHHhCCCCcEEEeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCEEEEe-------Cc
Confidence 47999997533 235677777766544333 2 232334665544332 34 578999993 43
Q ss_pred CchhHHHHHHHHcCCCCEEEEc
Q 046651 71 EDIGICLRVLLECWDVPILGVC 92 (392)
Q Consensus 71 ~d~gi~~~ll~~~~~iPILGVC 92 (392)
..-....+.+++.-++||+||.
T Consensus 76 Tas~~~l~~lr~~~~iPVigii 97 (272)
T 1zuw_A 76 TATAIALDDIQRSVGIPVVGVI 97 (272)
T ss_dssp HHHHHHHHHHHHHCSSCEEESH
T ss_pred hhhHHHHHHHHHHCCCCEEccc
Confidence 3333346666664499999975
No 244
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=34.26 E-value=66 Score=28.11 Aligned_cols=70 Identities=13% Similarity=-0.000 Sum_probs=41.8
Q ss_pred cEEEEEECC----CCchHHHHHHHHHhCCCCeEEEeCC-CCCHHHHHhhhcccCCcCEEEECCCCCCCCC-CCchhHHHH
Q 046651 5 VRTLLIDNY----DSYTYNIYQELSTINGVPPVVVRND-EWTWRDICRYLYEENAFDNIVISPGPGSPAC-PEDIGICLR 78 (392)
Q Consensus 5 ~r~LlIDny----DSyT~nl~q~L~~v~G~~pvVV~nd-~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~~d~gi~~~ 78 (392)
||||+|.-. .|++..+.....+. ..+++++.-. ..+.++....| ...|.||| ++|-- ..-.+.+..
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~~-~~~v~v~dL~~~~D~~~~~~~l---~~aD~iV~----~~P~y~~~~pa~lK~ 72 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIEN-FSNVTWHPLVADFNVEQEQSLL---LQNDRIIL----EFPLYWYSAPALLKQ 72 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTT-CTTEEEEECCTTCCHHHHHHHH---HTCSEEEE----EEECBTTBCCHHHHH
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHhc-CCCEEEEECCCcccHHHHHHHH---HhCCEEEE----ECChhhccCCHHHHH
Confidence 889988643 47787777666552 3556665443 33455555555 67999999 56642 122244455
Q ss_pred HHHH
Q 046651 79 VLLE 82 (392)
Q Consensus 79 ll~~ 82 (392)
++.+
T Consensus 73 ~iDr 76 (177)
T 3ha2_A 73 WMDT 76 (177)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 245
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=33.83 E-value=99 Score=26.96 Aligned_cols=80 Identities=18% Similarity=0.273 Sum_probs=38.9
Q ss_pred EEEEEE--CCCCchHHHHHHHHHh---CCCCeEEEeCC-CCCHH---HHHhhhcccCC-cCEEEECCCCCCCCCCCchhH
Q 046651 6 RTLLID--NYDSYTYNIYQELSTI---NGVPPVVVRND-EWTWR---DICRYLYEENA-FDNIVISPGPGSPACPEDIGI 75 (392)
Q Consensus 6 r~LlID--nyDSyT~nl~q~L~~v---~G~~pvVV~nd-~~~~e---el~~~l~e~~~-fDgIVISpGPGsp~~~~d~gi 75 (392)
+|.+|- ..+.|...+.+.+.+. .|..+.++..+ ..+.+ +....+.+ .. +|+||+.|.... ....
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~~vdgii~~~~~~~----~~~~- 75 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLS-QAPPDALILAPNSAE----DLTP- 75 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHH-HSCCSEEEECCSSTT----TTHH-
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHH-hCCCCEEEEeCCCHH----HHHH-
Confidence 555553 2334444444444322 68888776532 22222 22222323 45 999999753211 1111
Q ss_pred HHHHHHHcCCCCEEEEc
Q 046651 76 CLRVLLECWDVPILGVC 92 (392)
Q Consensus 76 ~~~ll~~~~~iPILGVC 92 (392)
..+.+.+. ++|+.-+.
T Consensus 76 ~~~~~~~~-~ipvV~~~ 91 (276)
T 3ksm_A 76 SVAQYRAR-NIPVLVVD 91 (276)
T ss_dssp HHHHHHHT-TCCEEEES
T ss_pred HHHHHHHC-CCcEEEEe
Confidence 23334444 89987764
No 246
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=33.31 E-value=1.2e+02 Score=28.60 Aligned_cols=86 Identities=10% Similarity=0.047 Sum_probs=45.2
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCC--CHHHHHhh--------hccc---CCcCEEEECCCCCCCCCC
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEW--TWRDICRY--------LYEE---NAFDNIVISPGPGSPACP 70 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~--~~eel~~~--------l~e~---~~fDgIVISpGPGsp~~~ 70 (392)
.+|+++|--+.+--..++++|.+ .|.++.+...... ..+++... -.+. ..+|-||+|||- .+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~-~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi-~~~-- 79 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKE-AGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVA-KRG-- 79 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHH-TTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTC-CTT--
T ss_pred CcEEEEEEECHHHHHHHHHHHHh-CCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCc-CCC--
Confidence 35677777765555557777766 6877766643321 11222210 0000 258999999774 122
Q ss_pred CchhHHHHHHHHcCCCCEEEEcHHHHHHHH
Q 046651 71 EDIGICLRVLLECWDVPILGVCLGHQALGF 100 (392)
Q Consensus 71 ~d~gi~~~ll~~~~~iPILGVCLGhQ~La~ 100 (392)
-.. .+..++. ++||++= .|+++.
T Consensus 80 --~p~-~~~a~~~-gi~v~~~---~e~~~~ 102 (326)
T 3eag_A 80 --MDV-VEAILNL-GLPYISG---PQWLSE 102 (326)
T ss_dssp --CHH-HHHHHHT-TCCEEEH---HHHHHH
T ss_pred --CHH-HHHHHHc-CCcEEeH---HHHHHH
Confidence 111 2222333 7888774 456665
No 247
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=32.94 E-value=42 Score=31.87 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=44.7
Q ss_pred ccEEEEEECC---CCchHHHHHHHHHh---CCCCeEEEeCCCCC------------HHHHHhhhcccCCcCEEEECCCCC
Q 046651 4 FVRTLLIDNY---DSYTYNIYQELSTI---NGVPPVVVRNDEWT------------WRDICRYLYEENAFDNIVISPGPG 65 (392)
Q Consensus 4 ~~r~LlIDny---DSyT~nl~q~L~~v---~G~~pvVV~nd~~~------------~eel~~~l~e~~~fDgIVISpGPG 65 (392)
.||||+|.-. .|+|..+.+.+.+. .|.+++++.-.+.. +.++...+ ...|+||| +
T Consensus 58 ~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I---~~ADgiV~----a 130 (279)
T 2fzv_A 58 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALS---EWSEGQVW----C 130 (279)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHH---HHCSEEEE----E
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHH---HHCCeEEE----E
Confidence 4889999754 47888777766442 58888776543322 33444444 56899999 5
Q ss_pred CCCCCC-chhHHHHHHHHc
Q 046651 66 SPACPE-DIGICLRVLLEC 83 (392)
Q Consensus 66 sp~~~~-d~gi~~~ll~~~ 83 (392)
+|.--. -.+.+..+|...
T Consensus 131 SP~Yn~sipg~LKn~IDrl 149 (279)
T 2fzv_A 131 SPERHGQITSVMKAQIDHL 149 (279)
T ss_dssp EEEETTEECHHHHHHHHHS
T ss_pred cCccccCcCHHHHHHHHHH
Confidence 764322 235555666553
No 248
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=32.91 E-value=2.1e+02 Score=25.50 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=39.6
Q ss_pred ccEEEEEECC--CCchHHHHH----HHHHhCCCCeEEEeCCCC-CHH---HHHhhhcccCCcCEEEECCCCCCCCCCCch
Q 046651 4 FVRTLLIDNY--DSYTYNIYQ----ELSTINGVPPVVVRNDEW-TWR---DICRYLYEENAFDNIVISPGPGSPACPEDI 73 (392)
Q Consensus 4 ~~r~LlIDny--DSyT~nl~q----~L~~v~G~~pvVV~nd~~-~~e---el~~~l~e~~~fDgIVISpGPGsp~~~~d~ 73 (392)
..+|.+|-.. +.|...+.+ .+.+ .|..+++...+.. +.+ +....+.+ ..+|+|||.|.. + ...
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~--~---~~~ 75 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEE-LKVDLQILAPPGANDVPKQVQFIESALA-TYPSGIATTIPS--D---TAF 75 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHH-HTCEEEEECCSSSCCHHHHHHHHHHHHH-TCCSEEEECCCC--S---STT
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHH-hCcEEEEECCCCcCCHHHHHHHHHHHHH-cCCCEEEEeCCC--H---HHH
Confidence 4567776443 334334443 3344 6998887764421 222 22222222 679999996432 1 111
Q ss_pred hHHHHHHHHcCCCCEEEE
Q 046651 74 GICLRVLLECWDVPILGV 91 (392)
Q Consensus 74 gi~~~ll~~~~~iPILGV 91 (392)
.-..+.+.+. ++|+.-+
T Consensus 76 ~~~~~~~~~~-giPvV~~ 92 (297)
T 3rot_A 76 SKSLQRANKL-NIPVIAV 92 (297)
T ss_dssp HHHHHHHHHH-TCCEEEE
T ss_pred HHHHHHHHHC-CCCEEEE
Confidence 1123333333 7887654
No 249
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=32.86 E-value=17 Score=34.04 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCCeEEEeCCCC------CHHHHHhhhcccCCcCEEEEC
Q 046651 20 IYQELSTINGVPPVVVRNDEW------TWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 20 l~q~L~~v~G~~pvVV~nd~~------~~eel~~~l~e~~~fDgIVIS 61 (392)
|.+.|+. .|.+++.+++++. +.+++ .+||.||++
T Consensus 38 ~~~aL~~-~~~~V~~i~~~~~~~~fP~~~~~L-------~~yDvIIl~ 77 (248)
T 3soz_A 38 LLSCLRQ-GNIDVDYMPAHIVQTRFPQTAEAL-------ACYDAIVIS 77 (248)
T ss_dssp HHHHHTT-TTCEEEEEETTHHHHSCCCSHHHH-------HTCSEEEEE
T ss_pred HHHHHhc-CCceeEEeCchhhhhhCCCChHHH-------hcCCEEEEc
Confidence 7888877 7999999988653 23444 569999996
No 250
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=32.21 E-value=53 Score=30.49 Aligned_cols=79 Identities=11% Similarity=0.116 Sum_probs=42.3
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeE-EEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPV-VVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pv-VV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.++|++|.....-..+-..|.. .|..++ ...+- ++....+ +...||.|++== .-|....-+..+.++-...
T Consensus 161 ~rILvVdD~~~~~~~l~~~L~~-~g~~v~~~a~~g----~eAl~~~-~~~~~dlvl~D~--~MPd~mdG~e~~~~ir~~~ 232 (286)
T 3n0r_A 161 TEVLIIEDEPVIAADIEALVRE-LGHDVTDIAATR----GEALEAV-TRRTPGLVLADI--QLADGSSGIDAVKDILGRM 232 (286)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TTCEEEEEESSH----HHHHHHH-HHCCCSEEEEES--CCTTSCCTTTTTHHHHHHT
T ss_pred CcEEEEcCCHHHHHHHHHHhhc-cCceEEEEeCCH----HHHHHHH-HhCCCCEEEEcC--CCCCCCCHHHHHHHHHhcC
Confidence 5899999643334445566665 798776 45433 2333323 226799988820 1121112233343333334
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
++||+.+-
T Consensus 233 -~~piI~lT 240 (286)
T 3n0r_A 233 -DVPVIFIT 240 (286)
T ss_dssp -TCCEEEEE
T ss_pred -CCCEEEEe
Confidence 89988765
No 251
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=32.20 E-value=38 Score=28.72 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=21.9
Q ss_pred cEEEEEECC-CCchHHHHHHHHHhCCCCeEEE
Q 046651 5 VRTLLIDNY-DSYTYNIYQELSTINGVPPVVV 35 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~v~G~~pvVV 35 (392)
+|||||=.- -..|..+++.|++..|.+..-|
T Consensus 5 ~kilIvY~S~tG~T~~vA~~Ia~~l~~~~~~i 36 (162)
T 3klb_A 5 RKILVAYFSCSGVTKAVAEKLAAITGADLYEI 36 (162)
T ss_dssp SCEEEEECCSSSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCEEEEEECCCchHHHHHHHHHHHhCCCeEEE
Confidence 478877542 2347789999998888876544
No 252
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=31.14 E-value=47 Score=31.66 Aligned_cols=92 Identities=15% Similarity=0.004 Sum_probs=52.1
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCCC-HHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHH
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEWT-WRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRV 79 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~~-~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~l 79 (392)
+|++||-|..|-. ..+.+.|.+ .|.++.+....... ..++...+. ...+|.||+.||-|+.. .+...+
T Consensus 30 ~~~~vi~Np~sg~~~~~~~i~~~l~~-~g~~~~~~~t~~~~~~~~~~~~~~-~~~~d~vvv~GGDGTl~-----~v~~~l 102 (332)
T 2bon_A 30 PASLLILNGKSTDNLPLREAIMLLRE-EGMTIHVRVTWEKGDAARYVEEAR-KFGVATVIAGGGDGTIN-----EVSTAL 102 (332)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHT-TTCCEEEEECCSTTHHHHHHHHHH-HHTCSEEEEEESHHHHH-----HHHHHH
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHH-cCCcEEEEEecCcchHHHHHHHHH-hcCCCEEEEEccchHHH-----HHHHHH
Confidence 3699999976543 235555555 68888777554331 222211111 14589999999988743 122222
Q ss_pred HHH--cCCCCEEEEcHHHHH-HHHHhC
Q 046651 80 LLE--CWDVPILGVCLGHQA-LGFVHG 103 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~-La~a~G 103 (392)
... ..++|+.+|=+|--- ++..+|
T Consensus 103 ~~~~~~~~~plgiiP~Gt~N~fa~~l~ 129 (332)
T 2bon_A 103 IQCEGDDIPALGILPLGTANDFATSVG 129 (332)
T ss_dssp HHCCSSCCCEEEEEECSSSCHHHHHTT
T ss_pred hhcccCCCCeEEEecCcCHHHHHHhcC
Confidence 221 247887777566553 555555
No 253
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=30.98 E-value=49 Score=26.14 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=41.7
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
..+|||+|........|-+.|....|...+..-. +.++....+.+...+|.||+--. -|. ...+.++.. +++.
T Consensus 13 ~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~---~~~~al~~l~~~~~~dlvilD~~--l~~-~~g~~~~~~-lr~~ 85 (145)
T 3kyj_B 13 PYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAA---NGQEALDKLAAQPNVDLILLDIE--MPV-MDGMEFLRH-AKLK 85 (145)
T ss_dssp SEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEES---SHHHHHHHHHHCTTCCEEEECTT--SCC-CTTCHHHHH-HHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEEC---CHHHHHHHHhcCCCCCEEEEeCC--CCC-CCHHHHHHH-HHhc
Confidence 4689999975555555666666522554432222 24555544433227999999422 111 123344444 4432
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
...|++-+.
T Consensus 86 ~~~~iiil~ 94 (145)
T 3kyj_B 86 TRAKICMLS 94 (145)
T ss_dssp CCCEEC-CB
T ss_pred CCCCeEEEE
Confidence 246666554
No 254
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.78 E-value=1.4e+02 Score=26.81 Aligned_cols=70 Identities=13% Similarity=0.255 Sum_probs=36.0
Q ss_pred CCchHHHHHHHHHh---CCCCeEEEeCCCC-CHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCCCEE
Q 046651 14 DSYTYNIYQELSTI---NGVPPVVVRNDEW-TWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWDVPIL 89 (392)
Q Consensus 14 DSyT~nl~q~L~~v---~G~~pvVV~nd~~-~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~iPIL 89 (392)
+.|-..+.+.+.+. .|..+.+...+.. ...++...+ ....+||||+.|...+ + . ..+.+.+. ++|+.
T Consensus 22 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l-~~~~vdGiIi~~~~~~-----~-~-~~~~l~~~-~iPvV 92 (294)
T 3qk7_A 22 NSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLV-ETRRVDALIVAHTQPE-----D-F-RLQYLQKQ-NFPFL 92 (294)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHH-HHTCCSEEEECSCCSS-----C-H-HHHHHHHT-TCCEE
T ss_pred ChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHH-HcCCCCEEEEeCCCCC-----h-H-HHHHHHhC-CCCEE
Confidence 33444444444322 7988877755432 223333333 2368999999754321 1 1 23334443 78876
Q ss_pred EEc
Q 046651 90 GVC 92 (392)
Q Consensus 90 GVC 92 (392)
-+.
T Consensus 93 ~~~ 95 (294)
T 3qk7_A 93 ALG 95 (294)
T ss_dssp EES
T ss_pred EEC
Confidence 543
No 255
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=30.49 E-value=47 Score=29.25 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=37.3
Q ss_pred CCccEEEEEE-------------CCCCchHH-HHHHH---HHhCCCCeEEEeCCCCCHHHHHhhhccc-CCcCEEEECCC
Q 046651 2 LEFVRTLLID-------------NYDSYTYN-IYQEL---STINGVPPVVVRNDEWTWRDICRYLYEE-NAFDNIVISPG 63 (392)
Q Consensus 2 ~~~~r~LlID-------------nyDSyT~n-l~q~L---~~v~G~~pvVV~nd~~~~eel~~~l~e~-~~fDgIVISpG 63 (392)
+..|++|||. -|.+-|.. |.+.+ +...|+++.....+. --++..++-+. ..+|+|||=||
T Consensus 4 ~~~m~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~g~~v~~~QSN~--EGeLId~Ih~a~~~~dgiIINpg 81 (156)
T 1gtz_A 4 LANAPIMILNGPNLNLLGQAQPEIYGSDTLADVEALCVKAAAAHGGTVDFRQSNH--EGELVDWIHEARLNHCGIVINPA 81 (156)
T ss_dssp TTTSCEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHTTTCCEEEEECSC--HHHHHHHHHHHHHHCSEEEEECT
T ss_pred ccCceEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCC--HHHHHHHHHHhhhcCcEEEECch
Confidence 4568888884 34455543 44444 334788988876654 24565555433 24899999655
Q ss_pred C
Q 046651 64 P 64 (392)
Q Consensus 64 P 64 (392)
-
T Consensus 82 A 82 (156)
T 1gtz_A 82 A 82 (156)
T ss_dssp T
T ss_pred h
Confidence 4
No 256
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=30.32 E-value=2.1e+02 Score=26.98 Aligned_cols=54 Identities=7% Similarity=0.073 Sum_probs=35.3
Q ss_pred ccEEEEEECC-CCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 4 FVRTLLIDNY-DSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 4 ~~r~LlIDny-DSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
.++++|+-.- ..+|..+++.+++. .|.++.++.-.+.+.+++...+ .++|.|||
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~---~~~d~ii~ 309 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEI---SDAGAVIV 309 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHH---HTCSEEEE
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHH---HHCCEEEE
Confidence 4788888432 12455666666543 4777777777766666665444 57999999
No 257
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=30.07 E-value=30 Score=34.61 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=31.5
Q ss_pred CCCchHHHHHHHHHhCCCCeEEE--eCCCCCHHHHHhhhccc-CCcCEEEECCCCC
Q 046651 13 YDSYTYNIYQELSTINGVPPVVV--RNDEWTWRDICRYLYEE-NAFDNIVISPGPG 65 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~pvVV--~nd~~~~eel~~~l~e~-~~fDgIVISpGPG 65 (392)
+|++.+-|..+|++ .|.+++.+ -.|+ .+++...|-+. ..+|.||+|||-|
T Consensus 202 ~dsn~~~L~~~l~~-~G~~v~~~~iv~Dd--~~~i~~al~~a~~~~DlvittGG~s 254 (411)
T 1g8l_A 202 YDTNRLAVHLMLEQ-LGCEVINLGIIRDD--PHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_dssp ECCHHHHHHHHHHH-TTCEEEEEEEECSC--HHHHHHHHHHHHHHCSEEEECSSSC
T ss_pred EcCchHHHHHHHHH-CCCEEEEEEEeCCC--HHHHHHHHHHHhhcCCEEEECCCCC
Confidence 46777889999988 79877532 2333 34443333111 3589999998865
No 258
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=29.82 E-value=16 Score=28.26 Aligned_cols=80 Identities=9% Similarity=0.160 Sum_probs=42.7
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+|+||||........+.+.|.. .|...+.. .. +.++....+ +...+|.|++--. -|.. .-+.++ +.+++.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~-~g~~~v~~-~~--~~~~a~~~~-~~~~~dlvl~D~~--l~~~-~g~~~~-~~l~~~ 76 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQ-LGFKQITA-AG--DGEQGMKIM-AQNPHHLVISDFN--MPKM-DGLGLL-QAVRAN 76 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHT-TTCSCEEC-CS--SHHHHHHHH-HTSCCSEEEECSS--SCSS-CHHHHH-HHHTTC
T ss_pred cCeEEEEcCCHHHHHHHHHHHHH-CCCcEEEe-cC--CHHHHHHHH-HcCCCCEEEEeCC--CCCC-CHHHHH-HHHhcC
Confidence 47899999765555566677765 57633222 22 245554444 3356899988321 1211 122223 334432
Q ss_pred ---CCCCEEEEc
Q 046651 84 ---WDVPILGVC 92 (392)
Q Consensus 84 ---~~iPILGVC 92 (392)
..+||+-+.
T Consensus 77 ~~~~~~~ii~~s 88 (129)
T 1p6q_A 77 PATKKAAFIILT 88 (129)
T ss_dssp TTSTTCEEEECC
T ss_pred ccccCCCEEEEe
Confidence 467887664
No 259
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=29.73 E-value=1.9e+02 Score=28.97 Aligned_cols=59 Identities=8% Similarity=-0.034 Sum_probs=35.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCC-HHHHHhh----hc-----ccCCcCEEEECCCC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWT-WRDICRY----LY-----EENAFDNIVISPGP 64 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~-~eel~~~----l~-----e~~~fDgIVISpGP 64 (392)
.|+++|--+.+--..++++|.. .|..+.+....+.. .+.+... .+ ....+|.||+|||-
T Consensus 23 ~~v~viGiG~sG~s~~A~~l~~-~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi 91 (494)
T 4hv4_A 23 RHIHFVGIGGAGMGGIAEVLAN-EGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAI 91 (494)
T ss_dssp CEEEEETTTSTTHHHHHHHHHH-TTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTS
T ss_pred CEEEEEEEcHhhHHHHHHHHHh-CCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCC
Confidence 4788888877776678888887 68887665332211 1122100 00 01358999999774
No 260
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=29.44 E-value=68 Score=25.05 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=38.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
.+|||||........+...|.. +..+... . +.++...++ +...+|.||+--. -|. ..-+.++..+-....
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~--~~~v~~~--~--~~~~a~~~~-~~~~~dlvl~D~~--lp~-~~g~~~~~~l~~~~~ 71 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALED--DFDVLTA--Q--GAEAAIAIL-EEEWVQVIICDQR--MPG-RTGVDFLTEVRERWP 71 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTT--TSCEEEE--S--SHHHHHHHH-HHSCEEEEEEESC--CSS-SCHHHHHHHHHHHCT
T ss_pred CeEEEEcCCHHHHHHHHHHhhc--CceEEEc--C--CHHHHHHHH-hcCCCCEEEEeCC--CCC-CcHHHHHHHHHHhCC
Confidence 4799999754444445555543 3444322 2 234444433 2256899988321 121 112333444333344
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+|++-+.
T Consensus 72 ~~~ii~~s 79 (139)
T 2jk1_A 72 ETVRIIIT 79 (139)
T ss_dssp TSEEEEEE
T ss_pred CCcEEEEe
Confidence 67877653
No 261
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=29.35 E-value=55 Score=29.85 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=35.0
Q ss_pred ccEEEEEECCC-------CchHHHHHHHHHh---CCCCeEEEeCCC-CCHHHHHhhhcccCCcCEEEE
Q 046651 4 FVRTLLIDNYD-------SYTYNIYQELSTI---NGVPPVVVRNDE-WTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 4 ~~r~LlIDnyD-------SyT~nl~q~L~~v---~G~~pvVV~nd~-~~~eel~~~l~e~~~fDgIVI 60 (392)
.||||+|.-.. |++..|.+.+.+. .|.++.++.-++ .+.++....| ...|.|||
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l---~~aD~iv~ 89 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENY---LWADTIIY 89 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHH---HHCSEEEE
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHH---HhCCEEEE
Confidence 36899997543 4566666655432 688888876543 2445555545 57999999
No 262
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=29.31 E-value=79 Score=27.46 Aligned_cols=71 Identities=20% Similarity=0.083 Sum_probs=41.0
Q ss_pred cEEEEEECC---CCchHHHHHHHHHhC--CCCeEEEeCCCCC-------------HHHHHhhhcccCCcCEEEECCCCCC
Q 046651 5 VRTLLIDNY---DSYTYNIYQELSTIN--GVPPVVVRNDEWT-------------WRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 5 ~r~LlIDny---DSyT~nl~q~L~~v~--G~~pvVV~nd~~~-------------~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
||||+|.-. .|+|..|.+.+.+.. |.+++++.-.+.. .+++...+ .+.|+||| ++
T Consensus 3 ~kilii~gS~r~~s~t~~la~~~~~~~~~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i---~~AD~iV~----~s 75 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEV---QEADAIWI----FS 75 (192)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHH---HHCSEEEE----EC
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHH---HhCCEEEE----EC
Confidence 589999765 478888888876543 5555555332111 13344434 56899999 57
Q ss_pred CCCC-CchhHHHHHHHH
Q 046651 67 PACP-EDIGICLRVLLE 82 (392)
Q Consensus 67 p~~~-~d~gi~~~ll~~ 82 (392)
|.-- .-.+.+..+|..
T Consensus 76 P~y~~~~p~~lK~~iD~ 92 (192)
T 3fvw_A 76 PVYNYAIPGPVKNLLDW 92 (192)
T ss_dssp CCBTTBCCHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHH
Confidence 6532 223444555544
No 263
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=29.01 E-value=2.7e+02 Score=24.69 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=38.0
Q ss_pred EEEEEECC--CCchHHHHHHHHHh---CCCCeEEEeCCCCCHHH---HHhhhcccCCcCEEEECCCCCCCCCCCchhHHH
Q 046651 6 RTLLIDNY--DSYTYNIYQELSTI---NGVPPVVVRNDEWTWRD---ICRYLYEENAFDNIVISPGPGSPACPEDIGICL 77 (392)
Q Consensus 6 r~LlIDny--DSyT~nl~q~L~~v---~G~~pvVV~nd~~~~ee---l~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~ 77 (392)
++.+|-.. +.|-..+++.+.+. .|..+.++.+...+.++ ....+. ...+|+||+.|.... ...-..
T Consensus 6 ~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~-----~~~~~~ 79 (305)
T 3g1w_A 6 TYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAI-AKNPAGIAISAIDPV-----ELTDTI 79 (305)
T ss_dssp EEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHH-HHCCSEEEECCSSTT-----TTHHHH
T ss_pred eEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHH-HhCCCEEEEcCCCHH-----HHHHHH
Confidence 45555332 34444455444322 69888775443333322 122221 157999999754321 111122
Q ss_pred HHHHHcCCCCEEEE
Q 046651 78 RVLLECWDVPILGV 91 (392)
Q Consensus 78 ~ll~~~~~iPILGV 91 (392)
+.+.+. ++|+.-+
T Consensus 80 ~~~~~~-~iPvV~~ 92 (305)
T 3g1w_A 80 NKAVDA-GIPIVLF 92 (305)
T ss_dssp HHHHHT-TCCEEEE
T ss_pred HHHHHC-CCcEEEE
Confidence 333333 8887654
No 264
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=28.86 E-value=23 Score=30.21 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=22.7
Q ss_pred chHHHHHHHHHhCCCC-eEEEeCCCC-CHHHHHhhhcccCCcCEEEE
Q 046651 16 YTYNIYQELSTINGVP-PVVVRNDEW-TWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 16 yT~nl~q~L~~v~G~~-pvVV~nd~~-~~eel~~~l~e~~~fDgIVI 60 (392)
+|..+++.|++.++.. +.++.-++. +.+++ ..+|.|||
T Consensus 12 nT~~vA~~ia~~l~~~~~~~~~~~~~~~~~~l-------~~~d~ii~ 51 (173)
T 2fcr_A 12 NTTEVADFIGKTLGAKADAPIDVDDVTDPQAL-------KDYDLLFL 51 (173)
T ss_dssp HHHHHHHHHHHHHGGGBCCCEEGGGCSCGGGG-------GGCSEEEE
T ss_pred hHHHHHHHHHHHhccCCcEEEehhhcCChhHH-------ccCCEEEE
Confidence 4666888888766542 334443333 23343 45899999
No 265
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=28.14 E-value=1.9e+02 Score=28.20 Aligned_cols=99 Identities=21% Similarity=0.296 Sum_probs=52.1
Q ss_pred EEEEEECCCCchH---HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC--------Cchh
Q 046651 6 RTLLIDNYDSYTY---NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP--------EDIG 74 (392)
Q Consensus 6 r~LlIDnyDSyT~---nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~--------~d~g 74 (392)
.++.||....... ...+.+.+..+.++.+ .+- .+.+++..+. +...|.|+++.|||+.... ..+.
T Consensus 119 d~I~ld~a~G~~~~~~~~i~~i~~~~~~~Viv-g~v-~t~e~A~~l~--~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~ 194 (361)
T 3khj_A 119 DVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIV-GNV-VTEEATKELI--ENGADGIKVGIGPGSICTTRIVAGVGVPQIT 194 (361)
T ss_dssp SEEEECCSCCSBHHHHHHHHHHHHHCCCEEEE-EEE-CSHHHHHHHH--HTTCSEEEECSSCCTTCCHHHHTCBCCCHHH
T ss_pred CeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEE-ccC-CCHHHHHHHH--HcCcCEEEEecCCCcCCCcccccCCCCCcHH
Confidence 3556665433333 3444444444554433 222 2455554422 3678999998888874321 1122
Q ss_pred HHHHH---HHHcCCCCEE---EEc-HHHHHHHHHhCCeeeec
Q 046651 75 ICLRV---LLECWDVPIL---GVC-LGHQALGFVHGADIVHA 109 (392)
Q Consensus 75 i~~~l---l~~~~~iPIL---GVC-LGhQ~La~a~Gg~V~~a 109 (392)
...++ ..+. ++||+ ||. .+.-.-+.+.||..+-.
T Consensus 195 ~i~~v~~~~~~~-~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 195 AIEKCSSVASKF-GIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHHHHHH-TCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhhc-CCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 22222 2223 79999 564 44444466788887654
No 266
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=28.08 E-value=84 Score=27.32 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=47.2
Q ss_pred HHHHHhCCCCeEEEeCCCC-CHHHHHhhhcccCCcCEEEECCCCCCCCC-CCchhHHHHHHHHcCCCCEEEEcHHHHHHH
Q 046651 22 QELSTINGVPPVVVRNDEW-TWRDICRYLYEENAFDNIVISPGPGSPAC-PEDIGICLRVLLECWDVPILGVCLGHQALG 99 (392)
Q Consensus 22 q~L~~v~G~~pvVV~nd~~-~~eel~~~l~e~~~fDgIVISpGPGsp~~-~~d~gi~~~ll~~~~~iPILGVCLGhQ~La 99 (392)
+.|.+.+|.++..|..-.. .-.++..++ .+.++|.||..+.|-.+.. ..|...+++.-.+. +||++=-=-+..++.
T Consensus 50 ~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I-~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~-~IP~~T~latA~a~v 127 (152)
T 1b93_A 50 NLISRATGMNVNAMLSGPMGGDQQVGALI-SEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVW-NIPVATNVATADFII 127 (152)
T ss_dssp HHHHHHHCCCCEEECCGGGTHHHHHHHHH-HTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHT-TCCEESSHHHHHHHH
T ss_pred HHHHHHhCceeEEEEecCCCCCchHHHHH-HCCCccEEEEcCCcccCCcccccHHHHHHHHHHc-CCCEEeCHHHHHHHH
Confidence 4454547999988853111 112344433 4589999999998855433 33443344444444 999987777777666
Q ss_pred HH
Q 046651 100 FV 101 (392)
Q Consensus 100 ~a 101 (392)
.+
T Consensus 128 ~a 129 (152)
T 1b93_A 128 QS 129 (152)
T ss_dssp TS
T ss_pred HH
Confidence 54
No 267
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=28.02 E-value=1.2e+02 Score=27.14 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=49.9
Q ss_pred HHHHHHhCCCCeEEEeCCCC-CHHHHHhhhcccCCcCEEEECCCCCCCCC-CCchhHHHHHHHHcCCCCEEEEcHHHHHH
Q 046651 21 YQELSTINGVPPVVVRNDEW-TWRDICRYLYEENAFDNIVISPGPGSPAC-PEDIGICLRVLLECWDVPILGVCLGHQAL 98 (392)
Q Consensus 21 ~q~L~~v~G~~pvVV~nd~~-~~eel~~~l~e~~~fDgIVISpGPGsp~~-~~d~gi~~~ll~~~~~iPILGVCLGhQ~L 98 (392)
.+.|.+.+|+++..|..-.. .-.++..++ .+..+|.||..+.|-.+.. ..|...+++.-... +||++=-=-+..++
T Consensus 65 a~~L~e~~Gl~v~~v~k~~eGG~pqI~d~I-~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~-~IP~~TnlatA~A~ 142 (178)
T 1vmd_A 65 GALLQEKLGLKVHRLKSGPLGGDQQIGAMI-AEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVY-NIPVAITRSTADFL 142 (178)
T ss_dssp HHHHHHHHCCCCEECSCGGGTHHHHHHHHH-HTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHT-TCCEESSHHHHHHH
T ss_pred HHHHHHHhCceeEEEeecCCCCCchHHHHH-HCCCccEEEEccCccCCCcccccHHHHHHHHHHc-CCCEEeCHHHHHHH
Confidence 45555547999887742111 112344433 4589999999998744443 44554445554445 99998877787777
Q ss_pred HHH
Q 046651 99 GFV 101 (392)
Q Consensus 99 a~a 101 (392)
..+
T Consensus 143 v~a 145 (178)
T 1vmd_A 143 ISS 145 (178)
T ss_dssp HHS
T ss_pred HHH
Confidence 765
No 268
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=27.69 E-value=57 Score=26.72 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=26.8
Q ss_pred cEEEEEECCCC---chHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 5 VRTLLIDNYDS---YTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 5 ~r~LlIDnyDS---yT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
|+++|+ |.| .|..+++.|++. .|+++.++... +.+++ ..+|.|||
T Consensus 2 ~ki~I~--Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~--~~~~l-------~~~d~vi~ 52 (147)
T 2hna_A 2 ADITLI--SGSTLGGAEYVAEHLAEKLEEAGFTTETLHGP--LLEDL-------PASGIWLV 52 (147)
T ss_dssp CSEEEE--CCTTSCCCHHHHHHHHHHHHHTTCCEEEECCT--TSCSS-------CSEEEEEE
T ss_pred CeEEEE--EECCchHHHHHHHHHHHHHHHCCCceEEecCC--CHHHc-------ccCCeEEE
Confidence 466666 445 466677777654 36777666432 12232 46899888
No 269
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=27.33 E-value=75 Score=25.48 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=27.4
Q ss_pred CchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 15 SYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 15 SyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
..|..+++.|++. .|+++.++.-++.+.+++ ..+|.|||
T Consensus 10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l-------~~~d~iii 51 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGKDVNTINVSDVNIDEL-------LNEDILIL 51 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHH-------TTCSEEEE
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHH-------hhCCEEEE
Confidence 3566677766543 488888887766656665 46999999
No 270
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=27.22 E-value=2.8e+02 Score=24.25 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=40.4
Q ss_pred cEEEEEEC--CCCchHHHHHHHHHh---CCCCeEEEeCCCCCH--HHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHH
Q 046651 5 VRTLLIDN--YDSYTYNIYQELSTI---NGVPPVVVRNDEWTW--RDICRYLYEENAFDNIVISPGPGSPACPEDIGICL 77 (392)
Q Consensus 5 ~r~LlIDn--yDSyT~nl~q~L~~v---~G~~pvVV~nd~~~~--eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~ 77 (392)
.+|.+|-. .+.|...+++.+.+. .|..+.+...+...- .++...+. ...+||||+.|... .-..
T Consensus 8 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~--------~~~~ 78 (276)
T 3jy6_A 8 KLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIG-SRGFDGLILQSFSN--------PQTV 78 (276)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHH-TTTCSEEEEESSCC--------HHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEecCCc--------HHHH
Confidence 45555532 233444455444322 798888776554311 12222222 36899999975432 1123
Q ss_pred HHHHHcCCCCEEEEc
Q 046651 78 RVLLECWDVPILGVC 92 (392)
Q Consensus 78 ~ll~~~~~iPILGVC 92 (392)
+.+.+. ++|+.-+.
T Consensus 79 ~~l~~~-~iPvV~i~ 92 (276)
T 3jy6_A 79 QEILHQ-QMPVVSVD 92 (276)
T ss_dssp HHHHTT-SSCEEEES
T ss_pred HHHHHC-CCCEEEEe
Confidence 334333 89987654
No 271
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=27.18 E-value=2.2e+02 Score=22.17 Aligned_cols=60 Identities=27% Similarity=0.383 Sum_probs=34.1
Q ss_pred CCCCe----EEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-ch-hHHHHHHHHcCCCCEEEE
Q 046651 28 NGVPP----VVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DI-GICLRVLLECWDVPILGV 91 (392)
Q Consensus 28 ~G~~p----vVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~-gi~~~ll~~~~~iPILGV 91 (392)
.|+++ ..+....+ .+++..+. ++..+|.||++ ..|...-.. -+ ....++++.+ +.|||=|
T Consensus 82 ~g~~~~~~~~~~~~g~~-~~~I~~~a-~~~~~dliV~G-~~~~~~~~~~~~Gs~~~~vl~~~-~~pVlvV 147 (147)
T 3hgm_A 82 LGVPADKVRAFVKGGRP-SRTIVRFA-RKRECDLVVIG-AQGTNGDKSLLLGSVAQRVAGSA-HCPVLVV 147 (147)
T ss_dssp TTCCGGGEEEEEEESCH-HHHHHHHH-HHTTCSEEEEC-SSCTTCCSCCCCCHHHHHHHHHC-SSCEEEC
T ss_pred cCCCccceEEEEecCCH-HHHHHHHH-HHhCCCEEEEe-CCCCccccceeeccHHHHHHhhC-CCCEEEC
Confidence 57665 33344443 56666644 33589999994 333221111 12 3466788777 8999853
No 272
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=27.02 E-value=33 Score=34.34 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=31.1
Q ss_pred CCCchHHHHHHHHHhCCCCeEEE--eCCCCCHHHHHhhhccc-CCcCEEEECCCCC
Q 046651 13 YDSYTYNIYQELSTINGVPPVVV--RNDEWTWRDICRYLYEE-NAFDNIVISPGPG 65 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~pvVV--~nd~~~~eel~~~l~e~-~~fDgIVISpGPG 65 (392)
+|++.+.|..+|++ .|.+++.+ -.|+ .+++...|-+. ..+|.||+|||-|
T Consensus 206 ~dsN~~~L~~~l~~-~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~DlVittGG~s 258 (419)
T 2fts_A 206 RDSNRSTLLATIQE-HGYPTINLGIVGDN--PDDLLNALNEGISRADVIITSGGVS 258 (419)
T ss_dssp ECCHHHHHHHHHHT-TTCCEEEEEEECSS--HHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred ecCchHHHHHHHHH-CCCEEEEEeecCCC--HHHHHHHHHHHHhcCCEEEEcCCCc
Confidence 46777889999988 79887532 2333 34433332111 3489999998864
No 273
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=26.71 E-value=29 Score=34.62 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=28.0
Q ss_pred CCCchHHHHHHHHHhCCCCeEEE--eCCCCCHHHHHhhhccc-CCcCEEEECCCCC
Q 046651 13 YDSYTYNIYQELSTINGVPPVVV--RNDEWTWRDICRYLYEE-NAFDNIVISPGPG 65 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~pvVV--~nd~~~~eel~~~l~e~-~~fDgIVISpGPG 65 (392)
+|++.+-|..+|++ .|.+++.+ -.|+ .+++...|-+. ..+|.||+|||-|
T Consensus 209 ~Dsn~~~L~~~l~~-~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~DlvittGG~s 261 (396)
T 1wu2_A 209 VETNSIMLQGLVEK-FFGEPILYGVLPDD--ESIIKETLEKAKNECDIVLITGGSA 261 (396)
T ss_dssp ECCHHHHHHHHHHH-TTCEEEEEEEECSC--HHHHTTHHHHHHHCSEEEECC----
T ss_pred ecchHHHHHHHHHH-CCCEEEEEEEeCCC--HHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 46777889999988 79877532 2333 33333322111 3589999988754
No 274
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=26.66 E-value=1.2e+02 Score=25.66 Aligned_cols=81 Identities=14% Similarity=0.048 Sum_probs=51.1
Q ss_pred HHHHHHhCCCCeEEEeCCC-CCHHHHHhhhcccCCcCEEEECCCCCCCCC-CCchhHHHHHHHHcCCCCEEEEcHHHHHH
Q 046651 21 YQELSTINGVPPVVVRNDE-WTWRDICRYLYEENAFDNIVISPGPGSPAC-PEDIGICLRVLLECWDVPILGVCLGHQAL 98 (392)
Q Consensus 21 ~q~L~~v~G~~pvVV~nd~-~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~~d~gi~~~ll~~~~~iPILGVCLGhQ~L 98 (392)
.+.|.+.+|.++..|..-. -.-.++..++ .+.++|.||..+.|-.+.. ..|...+++.-.+. +||++=-=-+..++
T Consensus 41 a~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I-~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~-~IP~~T~latA~a~ 118 (134)
T 2xw6_A 41 GRRIEEATGLTVEKLLSGPLGGDQQMGARV-AEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVH-GVPLATNPMAAEAL 118 (134)
T ss_dssp HHHHHHHHCCCCEECSCGGGTHHHHHHHHH-HTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHH-TCCEECSHHHHHHH
T ss_pred HHHHHHhhCceEEEEEecCCCCcchHHHHH-HCCCccEEEEccCcccCCCccchHHHHHHHHHHc-CCCeEcCHHHHHHH
Confidence 3455554799888774311 1122444433 4589999999998754443 34554445554445 99999887888888
Q ss_pred HHHhC
Q 046651 99 GFVHG 103 (392)
Q Consensus 99 a~a~G 103 (392)
..++.
T Consensus 119 v~al~ 123 (134)
T 2xw6_A 119 IPWLQ 123 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77753
No 275
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=26.30 E-value=3.3e+02 Score=27.47 Aligned_cols=106 Identities=20% Similarity=0.143 Sum_probs=58.6
Q ss_pred cEEEEEECCCCchH---HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--------CCch
Q 046651 5 VRTLLIDNYDSYTY---NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--------PEDI 73 (392)
Q Consensus 5 ~r~LlIDnyDSyT~---nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--------~~d~ 73 (392)
..++.||....+.. .+.+.+....+--++++.+- .+.++...+. +...|.|+++.|||+... ...+
T Consensus 242 ~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v-~t~e~a~~l~--~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~ 318 (490)
T 4avf_A 242 VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNI-ATAEAAKALA--EAGADAVKVGIGPGSICTTRIVAGVGVPQI 318 (490)
T ss_dssp CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEE-CSHHHHHHHH--HTTCSEEEECSSCSTTCHHHHHTCBCCCHH
T ss_pred cceEEecccCCcchhHHHHHHHHHHHCCCceEEEeee-CcHHHHHHHH--HcCCCEEEECCCCCcCCCccccCCCCccHH
Confidence 34667776554444 44455555443234444322 2455554422 267899999888888532 1122
Q ss_pred hHHHHHHHHc--CCCCEEE---E-cHHHHHHHHHhCCeeeecCCCc
Q 046651 74 GICLRVLLEC--WDVPILG---V-CLGHQALGFVHGADIVHAPEPV 113 (392)
Q Consensus 74 gi~~~ll~~~--~~iPILG---V-CLGhQ~La~a~Gg~V~~apep~ 113 (392)
....++...+ .++||++ | +.+.-.-+.+.||..+-.-...
T Consensus 319 ~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~ 364 (490)
T 4avf_A 319 SAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMF 364 (490)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTT
T ss_pred HHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHH
Confidence 2233333322 2799996 6 4555555777898877664433
No 276
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=26.14 E-value=1.1e+02 Score=29.63 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=43.3
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
+||||||........|...|.. .|..+....+ .++....+ +...+|.||+-- .-|. ..-+.++.+ |++
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~-~~~~v~~a~~----~~~al~~~-~~~~~dlvllD~--~mp~-~~G~~~~~~-l~~~~ 71 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTA-EYYEVSTAMD----GPTALAMA-ARDLPDIILLDV--MMPG-MDGFTVCRK-LKDDP 71 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHHCCSEEEEES--CCSS-SCHHHHHHH-HHHST
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-cCCEEEEECC----HHHHHHHH-hcCCCCEEEEcC--CCCC-CCHHHHHHH-HhcCc
Confidence 5899999866666667777766 6776544432 33444333 224689888821 1121 112333433 443
Q ss_pred -cCCCCEEEEc
Q 046651 83 -CWDVPILGVC 92 (392)
Q Consensus 83 -~~~iPILGVC 92 (392)
..++||+-+-
T Consensus 72 ~~~~~pii~lt 82 (459)
T 1w25_A 72 TTRHIPVVLIT 82 (459)
T ss_dssp TTTTSCEEEEE
T ss_pred ccCCCCEEEEE
Confidence 2478988663
No 277
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=25.67 E-value=30 Score=34.56 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=30.6
Q ss_pred CCCchHHHHHHHHHhCCCCeEEE--eCCCCCHHHHHhhhccc-CCcCEEEECCCCC
Q 046651 13 YDSYTYNIYQELSTINGVPPVVV--RNDEWTWRDICRYLYEE-NAFDNIVISPGPG 65 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~pvVV--~nd~~~~eel~~~l~e~-~~fDgIVISpGPG 65 (392)
+|++.+.|..+|++ .|.+++.+ -.|+ .+++...|-+. ..+|-||+|||-|
T Consensus 205 ~DsN~~~L~~~l~~-~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~DlVittGG~s 257 (402)
T 1uz5_A 205 YDINGRALCDAINE-LGGEGIFMGVARDD--KESLKALIEKAVNVGDVVVISGGAS 257 (402)
T ss_dssp ECCHHHHHHHHHHH-HTSEEEEEEEECSS--HHHHHHHHHHHHHHCSEEEEECCC-
T ss_pred EcchHHHHHHHHHh-CCCeEEEEEEeCCC--HHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 46777889999988 68877532 2333 34433322111 3589999998864
No 278
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=25.53 E-value=2.8e+02 Score=25.74 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=50.1
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCC-------CCHHHH-------HhhhcccCCcCEEEECCCCCCCCCC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDE-------WTWRDI-------CRYLYEENAFDNIVISPGPGSPACP 70 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~-------~~~eel-------~~~l~e~~~fDgIVISpGPGsp~~~ 70 (392)
++|+|+|-+= =.-.+++.+.+....+..+.--|. .+.+++ ..++++...+|.|||+ |.
T Consensus 22 ~~IgvfDSGv-GGltv~~~i~~~lP~~~~iy~~D~~~~PyG~~s~~~i~~~~~~i~~~ll~~~g~d~Ivia-------CN 93 (285)
T 2jfn_A 22 PTVLVFDSGV-GGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVVA-------CN 93 (285)
T ss_dssp EEEEEEESSS-THHHHHHHHHHHSTTSEEEEEECTTTCCTTTSCHHHHHHHHHHHHHHHHHHSCCSEEEEC-------CH
T ss_pred CcEEEEeCCc-cHHHHHHHHHHhCCCCCeEEeeccCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEE-------Cc
Confidence 5699999532 234677888776655443322232 223333 3334444679999994 32
Q ss_pred CchhHHHHHHHHcCCCCEEEEcHHHHHHH
Q 046651 71 EDIGICLRVLLECWDVPILGVCLGHQALG 99 (392)
Q Consensus 71 ~d~gi~~~ll~~~~~iPILGVCLGhQ~La 99 (392)
..-....+.+++.-++||+||.-+....+
T Consensus 94 Tas~~~l~~lr~~~~iPVigi~~a~~~a~ 122 (285)
T 2jfn_A 94 TASTVSLPALREKFDFPVVGVVPAIKPAA 122 (285)
T ss_dssp HHHHHHHHHHHHHCSSCEECCCCCHHHHH
T ss_pred cccHHHHHHHHHhCCCCEEehHHHHHHHH
Confidence 22223456666644999999976544333
No 279
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=25.38 E-value=1e+02 Score=27.72 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=42.4
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+|+||||........+...|.. .|..+....+ -++...++-+...||.|++== .-|. ..-+.++.++-...
T Consensus 124 ~~~ILivDD~~~~~~~l~~~L~~-~~~~v~~a~~----~~eal~~l~~~~~~dlvllD~--~mP~-~dG~~l~~~lr~~~ 195 (259)
T 3luf_A 124 QIEVLVVDDSRTSRHRTMAQLRK-QLLQVHEASH----AREALATLEQHPAIRLVLVDY--YMPE-IDGISLVRMLRERY 195 (259)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT-TTCEEEEESS----HHHHHHHHHHCTTEEEEEECS--CCSS-SCHHHHHHHHHHHC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHH-cCcEEEEeCC----HHHHHHHHhcCCCCCEEEEcC--CCCC-CCHHHHHHHHHhcc
Confidence 47999999754444455666665 5765544332 344444442223488888721 1121 12234344433332
Q ss_pred --CCCCEEEEc
Q 046651 84 --WDVPILGVC 92 (392)
Q Consensus 84 --~~iPILGVC 92 (392)
..+||+.+.
T Consensus 196 ~~~~~~ii~~s 206 (259)
T 3luf_A 196 SKQQLAIIGIS 206 (259)
T ss_dssp CTTTSEEEEEE
T ss_pred CCCCCeEEEEE
Confidence 368888665
No 280
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=25.25 E-value=1.4e+02 Score=28.25 Aligned_cols=52 Identities=10% Similarity=0.112 Sum_probs=32.7
Q ss_pred ccEEEEEECCCCc---hHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEE
Q 046651 4 FVRTLLIDNYDSY---TYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 4 ~~r~LlIDnyDSy---T~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVI 60 (392)
.|+++|+- .|. |..+++.+++. .|.++.++.-.+....++...+ .++|+|||
T Consensus 251 ~~~i~i~y--~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~---~~~d~ii~ 308 (398)
T 1ycg_A 251 KAKAVIAY--DTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEI---LDARAVLV 308 (398)
T ss_dssp CSEEEEEE--CCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHH---HHCSEEEE
T ss_pred cCeEEEEE--ECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH---HHCCEEEE
Confidence 47777773 454 45577666554 4677777765555555554433 46899999
No 281
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=30.31 E-value=16 Score=32.51 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=21.5
Q ss_pred ccEEEEEECC---CCchHHHHHHHHHhC--CCCeEEE
Q 046651 4 FVRTLLIDNY---DSYTYNIYQELSTIN--GVPPVVV 35 (392)
Q Consensus 4 ~~r~LlIDny---DSyT~nl~q~L~~v~--G~~pvVV 35 (392)
.||||+|.-. +|+|..|.+.+.+.. |.++.++
T Consensus 6 ~mkIliI~gS~r~~s~t~~la~~~~~~~~~g~~v~~i 42 (199)
T 3s2y_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPL 42 (199)
Confidence 4889888643 478888887776533 5566655
No 282
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=23.87 E-value=72 Score=27.54 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=32.2
Q ss_pred ccEEEEEECC-CCchHHHHHHHHHhCCCCeEEEeC-CCCCHHHHHhhhcccCCcCEEEECCCCCCCC
Q 046651 4 FVRTLLIDNY-DSYTYNIYQELSTINGVPPVVVRN-DEWTWRDICRYLYEENAFDNIVISPGPGSPA 68 (392)
Q Consensus 4 ~~r~LlIDny-DSyT~nl~q~L~~v~G~~pvVV~n-d~~~~eel~~~l~e~~~fDgIVISpGPGsp~ 68 (392)
.|||+||-.- .++|..+.+.+++..+...+-|.. ++..- .+...| .++|+||| |+|.
T Consensus 6 ~~kiliiy~S~~GnT~~lA~~ia~~l~~~~~~v~~~~~~~~-~~~~~l---~~~D~ii~----gsP~ 64 (193)
T 3d7n_A 6 SSNTVVVYHSGYGHTHRMAEAVAEGAEATLHAIDAEGNLSE-DGWAAL---DAADAIIF----GTPT 64 (193)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHHTCEEEECCTTSCCCH-HHHHHH---HHCSEEEE----EEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHhhhcceEeeecCCCCH-hHHHHH---HHCCEEEE----EeCc
Confidence 4788888543 245777999998866554333322 11211 122222 45999999 5554
No 283
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=23.80 E-value=1.2e+02 Score=26.98 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=35.6
Q ss_pred ccEEEEEEC-------------CCCchHH-HHHHH---HHhCCCCeEEEeCCCCCHHHHHhhhccc-CCcCEEEECCCCC
Q 046651 4 FVRTLLIDN-------------YDSYTYN-IYQEL---STINGVPPVVVRNDEWTWRDICRYLYEE-NAFDNIVISPGPG 65 (392)
Q Consensus 4 ~~r~LlIDn-------------yDSyT~n-l~q~L---~~v~G~~pvVV~nd~~~~eel~~~l~e~-~~fDgIVISpGPG 65 (392)
.|++|||.- |++-|.. |.+.+ +...|+++.....+. --++..++-++ ..+|+|||=||--
T Consensus 28 ~M~IlVLNGPNLNlLG~REP~iYG~~TL~dI~~~l~~~a~~~G~~l~~~QSN~--EGeLId~Ih~A~~~~dgIIINPgAy 105 (172)
T 3n8k_A 28 ELIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAELGLKAVVRQSDS--EAQLLDWIHQAADAAEPVILNAGGL 105 (172)
T ss_dssp -CEEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHHTTCEEEEEECSC--HHHHHHHHHHHHHHTCCEEEECGGG
T ss_pred cCEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCC--HHHHHHHHHHhhhcCcEEEECcchh
Confidence 478888852 4444532 33333 333788888776654 24555554332 3489999976644
Q ss_pred C
Q 046651 66 S 66 (392)
Q Consensus 66 s 66 (392)
+
T Consensus 106 T 106 (172)
T 3n8k_A 106 T 106 (172)
T ss_dssp G
T ss_pred h
Confidence 3
No 284
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=23.35 E-value=67 Score=30.95 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=42.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+||||||....+...|-+.|....|.+++..-.+ .++....+ +...+|.|++-- .-|. ..-+..+.+ |++.
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~---~~eAl~~l-~~~~pDlVllDi--~mp~-~dGlell~~-l~~~ 74 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPD---PLVARDLI-KKFNPDVLTLDV--EMPR-MDGLDFLEK-LMRL 74 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESS---HHHHHHHH-HHHCCSEEEEEC--CCSS-SCHHHHHHH-HHHS
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCC---HHHHHHHH-hccCCCEEEEEC--CCCC-CCHHHHHHH-HHhc
Confidence 47899999754444456666665235553322222 34444333 224699999831 1121 122333334 4443
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
..+||+-+.
T Consensus 75 ~p~pVIvlS 83 (349)
T 1a2o_A 75 RPMPVVMVS 83 (349)
T ss_dssp SCCCEEEEE
T ss_pred CCCcEEEEE
Confidence 359998775
No 285
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=22.99 E-value=2.2e+02 Score=22.64 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=29.9
Q ss_pred cEEEEEECCCCchHHHHHHHHH---hCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECC
Q 046651 5 VRTLLIDNYDSYTYNIYQELST---INGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISP 62 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~---v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISp 62 (392)
+|||++-...-=|.-+.+.+.+ -.|.+..+...+....++.. ..+|.|+++|
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~------~~~Dvil~~p 58 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKG------QNADVVLLGP 58 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHH------HHCSEEEECT
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc------cCCCEEEEcc
Confidence 4677776554445444433322 27998877665554444322 4589888853
No 286
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=22.91 E-value=42 Score=26.16 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=30.9
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
..+||||||........+.+.|.. .|..+.... +.++....+ +... |.||+-
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~~-~~~~-dlvllD 57 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVH-LGCEVTTVS----SNEECLRVV-SHEH-KVVFMD 57 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----SHHHHHHHC-CTTC-SEEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH-cCCeEEEeC----CHHHHHHHH-hccC-CEEEEe
Confidence 347999999754445556666765 687654332 245555544 2233 877773
No 287
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=22.80 E-value=90 Score=28.86 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=23.8
Q ss_pred ccEEEEEECC---CCchHHHHHHHHHh---CCCCeEEEeCC
Q 046651 4 FVRTLLIDNY---DSYTYNIYQELSTI---NGVPPVVVRND 38 (392)
Q Consensus 4 ~~r~LlIDny---DSyT~nl~q~L~~v---~G~~pvVV~nd 38 (392)
.||||+|... .|+|..|.+.+.+. .|.+++++.-.
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~ 42 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLY 42 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 3789999765 46787777765432 57788777543
No 288
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=21.76 E-value=4.1e+02 Score=23.36 Aligned_cols=79 Identities=18% Similarity=0.059 Sum_probs=38.3
Q ss_pred cEEEEEE--CCCCchHHHHHHHHH---hCCCCeEEEeCCCC-C-HHH---HHhhhcccCCcCEEEECCCCCCCCCCCchh
Q 046651 5 VRTLLID--NYDSYTYNIYQELST---INGVPPVVVRNDEW-T-WRD---ICRYLYEENAFDNIVISPGPGSPACPEDIG 74 (392)
Q Consensus 5 ~r~LlID--nyDSyT~nl~q~L~~---v~G~~pvVV~nd~~-~-~ee---l~~~l~e~~~fDgIVISpGPGsp~~~~d~g 74 (392)
.+|.+|- ..+.|-..+.+.+.+ -.|..+.+...+.. . ..+ ....+. ...+||||+.|...+ + .
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~-----~-~ 81 (290)
T 2rgy_A 9 GIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLI-GRDCDGVVVISHDLH-----D-E 81 (290)
T ss_dssp CEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHH-HTTCSEEEECCSSSC-----H-H
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHH-hcCccEEEEecCCCC-----H-H
Confidence 3455553 223343344443322 27888876644321 1 122 333232 267999999753221 1 1
Q ss_pred HHHHHHHHcCCCCEEEEc
Q 046651 75 ICLRVLLECWDVPILGVC 92 (392)
Q Consensus 75 i~~~ll~~~~~iPILGVC 92 (392)
..+.+.+. ++|+.-+.
T Consensus 82 -~~~~l~~~-~iPvV~~~ 97 (290)
T 2rgy_A 82 -DLDELHRM-HPKMVFLN 97 (290)
T ss_dssp -HHHHHHHH-CSSEEEES
T ss_pred -HHHHHhhc-CCCEEEEc
Confidence 22333333 88987664
No 289
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=21.62 E-value=3.6e+02 Score=24.53 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=33.7
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCC---CCHHHHHhhhcccCCcCEEEECCCCCCCC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDE---WTWRDICRYLYEENAFDNIVISPGPGSPA 68 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~---~~~eel~~~l~e~~~fDgIVISpGPGsp~ 68 (392)
+|++.+. +|..+.+..+....|..++.++.+. .+.+++...+-+......|+++ .|.+|.
T Consensus 97 ~vl~~~~--~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~-~~~npt 159 (386)
T 2dr1_A 97 KVLVTII--GAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTIT-YNETST 159 (386)
T ss_dssp EEEEEES--SHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEE-SEETTT
T ss_pred eEEEEcC--CchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEE-eecCCc
Confidence 4555553 4432223334444799998887653 3466766655222456788886 455554
No 290
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.57 E-value=2.5e+02 Score=24.68 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=40.4
Q ss_pred cEEEEEECC--CCchHHHHHHHHH---hCCCCeEEEeCCCCCHH---HHHhhhcccCCcCEEEECCCCCCCCCCCchhHH
Q 046651 5 VRTLLIDNY--DSYTYNIYQELST---INGVPPVVVRNDEWTWR---DICRYLYEENAFDNIVISPGPGSPACPEDIGIC 76 (392)
Q Consensus 5 ~r~LlIDny--DSyT~nl~q~L~~---v~G~~pvVV~nd~~~~e---el~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~ 76 (392)
.+|.+|-.. +.|...+++.+.+ -.|..+.++..+.. .+ +....+. ...+|+||+.|... ....-.
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~l~-~~~vdgiI~~~~~~-----~~~~~~ 81 (293)
T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNS-RISEREQILEFV-HLKVDAIFITTLDD-----VYIGSA 81 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSC-HHHHHHHHHHHH-HTTCSEEEEECSCT-----TTTHHH
T ss_pred cEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHHHHHHHHHHH-HcCCCEEEEecCCh-----HHHHHH
Confidence 455555332 3344444444432 27999888765532 22 2222222 26799999975321 122122
Q ss_pred HHHHHHcCCCCEEEEc
Q 046651 77 LRVLLECWDVPILGVC 92 (392)
Q Consensus 77 ~~ll~~~~~iPILGVC 92 (392)
.+.+.+. ++|+.-+.
T Consensus 82 ~~~~~~~-~iPvV~~~ 96 (293)
T 3l6u_A 82 IEEAKKA-GIPVFAID 96 (293)
T ss_dssp HHHHHHT-TCCEEEES
T ss_pred HHHHHHc-CCCEEEec
Confidence 3334444 88887653
No 291
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=21.22 E-value=2.6e+02 Score=29.29 Aligned_cols=102 Identities=17% Similarity=0.223 Sum_probs=63.1
Q ss_pred cEEEEEECCCCchHH---HHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC---chh----
Q 046651 5 VRTLLIDNYDSYTYN---IYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE---DIG---- 74 (392)
Q Consensus 5 ~r~LlIDnyDSyT~n---l~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~---d~g---- 74 (392)
+-+++||--..+..+ ..+.+.....--+++.-|- .|.+....++ + ...|+|-+.=|||+.-... -+|
T Consensus 294 vD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNV-aT~e~a~~Li-~-aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~ 370 (556)
T 4af0_A 294 LDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNV-VTREQAAQLI-A-AGADGLRIGMGSGSICITQEVMAVGRPQG 370 (556)
T ss_dssp CCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEE-CSHHHHHHHH-H-HTCSEEEECSSCSTTBCCTTTCCSCCCHH
T ss_pred CcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccc-cCHHHHHHHH-H-cCCCEEeecCCCCcccccccccCCCCcHH
Confidence 357888876555544 4455554333334444443 3555554433 2 4689999999999863221 111
Q ss_pred ----HHHHHHHHcCCCCEEE----EcHHHHHHHHHhCCeeeecC
Q 046651 75 ----ICLRVLLECWDVPILG----VCLGHQALGFVHGADIVHAP 110 (392)
Q Consensus 75 ----i~~~ll~~~~~iPILG----VCLGhQ~La~a~Gg~V~~ap 110 (392)
-|.+..++. ++||+. -|-|.-+.|.+.||..+-+-
T Consensus 371 tAi~~~a~~a~~~-~vpvIADGGI~~sGDi~KAlaaGAd~VMlG 413 (556)
T 4af0_A 371 TAVYAVAEFASRF-GIPCIADGGIGNIGHIAKALALGASAVMMG 413 (556)
T ss_dssp HHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHc-CCCEEecCCcCcchHHHHHhhcCCCEEEEc
Confidence 133333334 899987 68899999999999988763
No 292
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=21.03 E-value=4.2e+02 Score=24.51 Aligned_cols=84 Identities=17% Similarity=0.257 Sum_probs=49.6
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEE-------eCCCCCHHHHHhhhc------ccCCcCEEEECCCCCCCCCCC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVV-------RNDEWTWRDICRYLY------EENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV-------~nd~~~~eel~~~l~------e~~~fDgIVISpGPGsp~~~~ 71 (392)
..|++.|-+=. -..+++++.+.+..+-.+. ++-..+.+++..+.. +...+|.|||. |..
T Consensus 6 ~~IgvfDSGvG-Gltv~~~i~~~lP~~~~iy~~D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~~IVIA-------CNT 77 (269)
T 3ist_A 6 QAIGFIDSGVG-GLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIA-------CNT 77 (269)
T ss_dssp CCEEEEESSST-THHHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEEC-------CHH
T ss_pred CcEEEEECCcc-HHHHHHHHHHHCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-------CCC
Confidence 35888886421 2346777777665443333 344445666644332 34678999993 433
Q ss_pred chhHHHHHHHHcCCCCEEEEcH-HHH
Q 046651 72 DIGICLRVLLECWDVPILGVCL-GHQ 96 (392)
Q Consensus 72 d~gi~~~ll~~~~~iPILGVCL-GhQ 96 (392)
.-....+.|++.-++||+||.. +..
T Consensus 78 a~~~al~~lr~~~~iPvigii~pa~~ 103 (269)
T 3ist_A 78 ATAAALYDIREKLDIPVIGVIQPGSR 103 (269)
T ss_dssp HHHHHHHHHHHHCSSCEEESHHHHHH
T ss_pred ccHHHHHHHHHhcCCCEEeecHHHHH
Confidence 3333356676644899999864 444
No 293
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=20.91 E-value=35 Score=32.24 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=29.3
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhC--CCCeEEEeCCCC-CHHHHHhhhcccCCcCEEEECCCCCC
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTIN--GVPPVVVRNDEW-TWRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~--G~~pvVV~nd~~-~~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
++||+||+.+...+ ..++|.+...+ |..+.++...+. ..+.+.. .++|-||+ .|-|.
T Consensus 29 ~~m~ill~~~~~~~-~~l~q~l~~~l~~~h~V~~~~~~~~~~~~~L~~-----~~pDliv~-~~y~~ 88 (260)
T 1zgh_A 29 GLMNIIIATTKSWN-IKNAQKFKKENESKYNTTIITNKDELTFEKVKL-----INPEYILF-PHWSW 88 (260)
T ss_dssp -CEEEEEECCSHHH-HHHHHHHHHHTTTTEEEEEECSGGGCCHHHHHH-----HCCSEEEE-SSCCS
T ss_pred CceEEEEECChHHH-HHHHHHHHHHhcccCceEEEeCCCHHHHHHHHh-----cCCCEEEE-ecccc
Confidence 57999999763332 23444443222 445555633222 2344433 57898888 34443
No 294
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=20.40 E-value=35 Score=31.83 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=39.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
.++|||||........|...|....|..+....+ .++....+ +...+|.||+-- .-|. ..-+.++. .|++
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~----~~~al~~~-~~~~~dlvl~D~--~mp~-~~G~~~~~-~l~~~ 88 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSD----PQQAVAVA-NQIKPTVILQDL--VMPG-VDGLTLLA-AYRGN 88 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECC----HHHHHHHH-HHHCCSEEEEES--BCSS-SBHHHHHH-HHTTS
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCC----HHHHHHHH-HhCCCCEEEEeC--CCCC-CCHHHHHH-HHhcC
Confidence 4689999975544544545553223554433322 34444333 224689888821 1121 11223333 3333
Q ss_pred --cCCCCEEEEc
Q 046651 83 --CWDVPILGVC 92 (392)
Q Consensus 83 --~~~iPILGVC 92 (392)
..++||+-+.
T Consensus 89 ~~~~~~~ii~~s 100 (358)
T 3bre_A 89 PATRDIPIIVLS 100 (358)
T ss_dssp TTTTTSCEEEEE
T ss_pred cccCCCcEEEEe
Confidence 2378998774
No 295
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=20.21 E-value=3.4e+02 Score=26.46 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHHHHc-CCCCEEE-
Q 046651 15 SYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVLLEC-WDVPILG- 90 (392)
Q Consensus 15 SyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll~~~-~~iPILG- 90 (392)
+.++...+.|.+..+.++++ ..- .+.++.... ++..+|+|++++..|+-.. +..+..+.++.+.. .++||++
T Consensus 203 ~~~w~~i~~lr~~~~~Pviv-K~v-~~~e~A~~a--~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~ 278 (352)
T 3sgz_A 203 SFCWNDLSLLQSITRLPIIL-KGI-LTKEDAELA--MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMD 278 (352)
T ss_dssp TCCHHHHHHHHHHCCSCEEE-EEE-CSHHHHHHH--HHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEE
T ss_pred CCCHHHHHHHHHhcCCCEEE-Eec-CcHHHHHHH--HHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEE
Confidence 57888899998877766643 322 235554432 2367999999876554211 23344444444432 3799995
Q ss_pred --EcHHHHHHHH-HhCCeeeecCCC
Q 046651 91 --VCLGHQALGF-VHGADIVHAPEP 112 (392)
Q Consensus 91 --VCLGhQ~La~-a~Gg~V~~apep 112 (392)
|.-|-.++.. ++||..+..-.+
T Consensus 279 GGI~~g~Dv~kaLalGA~aV~iGr~ 303 (352)
T 3sgz_A 279 GGVRTGTDVLKALALGARCIFLGRP 303 (352)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHH
Confidence 5566665543 478888776443
No 296
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=20.15 E-value=94 Score=27.39 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=20.0
Q ss_pred ccEEEEEECC---CCchHHHHHHHHHhCC
Q 046651 4 FVRTLLIDNY---DSYTYNIYQELSTING 29 (392)
Q Consensus 4 ~~r~LlIDny---DSyT~nl~q~L~~v~G 29 (392)
.||||+|.-. +|+|..|.+.+.+...
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~ 34 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAP 34 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCC
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHcc
Confidence 4799999753 5788889998877653
Done!