BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046652
         (518 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IEF|A Chain A, Crystal Structure Of Trna Guanine-N1-Methyltransferase
           From Bartonella Henselae Using Mpcs.
 pdb|3IEF|B Chain B, Crystal Structure Of Trna Guanine-N1-Methyltransferase
           From Bartonella Henselae Using Mpcs
          Length = 233

 Score = 33.9 bits (76), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 9/78 (11%)

Query: 419 IPVRDVKDWRVNVNETLVGISEDRILALREQVVRLIPSVIYADPRSKLETLEDAFDLAVK 478
           I  R++++  V++ + ++   E   L L + +VRL+P V+  +  +K E+ E+       
Sbjct: 122 IEARELEE--VSIGDYILSGGETAALVLLDAIVRLLPGVMGNEISAKCESFEN------- 172

Query: 479 GILERIEQVRSSIRQGRG 496
           G+LE  +  R ++ +GRG
Sbjct: 173 GLLEHPQYTRPAVFEGRG 190


>pdb|2BS2|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|2BS2|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
          Length = 241

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/88 (22%), Positives = 37/88 (42%)

Query: 227 LWGRDHFLVAGRIAWDFRRQTDNESDWGSKFRFLPESKNMSMLSIESSSWNNDFAIPYPT 286
           + G    ++ GR +   R  T +  D       LP  K +  LS+++ +W N  +    +
Sbjct: 61  ICGSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVES 120

Query: 287 CFHPSKESEIIGWQDRMRKRKRQYLFSF 314
             H  KE +I   ++R+     Q +F  
Sbjct: 121 WIHAQKEHDISKLEERIEPEVAQEVFEL 148


>pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes
 pdb|1QLB|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes
 pdb|1E7P|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|1E7P|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|1E7P|H Chain H, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|1E7P|K Chain K, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|2BS3|B Chain B, Glu C180-> Gln Variant Quinol:fumarate Reductase From
           Wolinella Succinogenes
 pdb|2BS3|E Chain E, Glu C180-> Gln Variant Quinol:fumarate Reductase From
           Wolinella Succinogenes
 pdb|2BS4|B Chain B, Glu C180-> Ile Variant Quinol:fumarate Reductase From
           Wolinella Succinogenes
 pdb|2BS4|E Chain E, Glu C180-> Ile Variant Quinol:fumarate Reductase From
           Wolinella Succinogenes
          Length = 239

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/88 (22%), Positives = 37/88 (42%)

Query: 227 LWGRDHFLVAGRIAWDFRRQTDNESDWGSKFRFLPESKNMSMLSIESSSWNNDFAIPYPT 286
           + G    ++ GR +   R  T +  D       LP  K +  LS+++ +W N  +    +
Sbjct: 61  ICGSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVES 120

Query: 287 CFHPSKESEIIGWQDRMRKRKRQYLFSF 314
             H  KE +I   ++R+     Q +F  
Sbjct: 121 WIHAQKEHDISKLEERIEPEVAQEVFEL 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.140    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,935,370
Number of Sequences: 62578
Number of extensions: 681788
Number of successful extensions: 1289
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 3
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)