BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046654
(987 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
Query: 392 LNFTQIITNAYVGDCSVRFNLRFPT------VFSVRNRSTILGQIWSNKSEHDPGYFDKI 445
LNF I Y G C++RF+ P V S++N LG WS + YFD++
Sbjct: 49 LNFG--IAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQL 106
Query: 446 GFQSSQEVLMGLSGFKYRYTLVDVARKSCAIKNNVKHKGKTYPDVN-SVDMRFSMYVKNS 504
+ + + GL+ Y ++ + + GK P + SV+ +++ K
Sbjct: 107 HAYAIELINKGLA-----YVDELTPEQTREYRGTLTQPGKNSPYRDRSVEENLALFEKMR 161
Query: 505 NGQISHGFA 513
G G A
Sbjct: 162 AGGFEEGKA 170
>pdb|1O0B|A Chain A, Crystal Structure Of L-Glutamine And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
pdb|1O0C|A Chain A, Crystal Structure Of L-glutamate And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
Length = 554
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 392 LNFTQIITNAYVGDCSVRFNLRFPT------VFSVRNRSTILGQIWSNKSEHDPGYFDKI 445
LNF I Y G C++RF+ P V S++N LG WS + YFD++
Sbjct: 50 LNFG--IAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQL 107
Query: 446 GFQSSQEVLMGLS 458
+ + + GL+
Sbjct: 108 HAYAIELINKGLA 120
>pdb|1GSG|P Chain P, Structure Of E.Coli Glutaminyl-Trna Synthetase Complexed
With Trnagln And Atp At 2.8 Angstroms Resolution
pdb|1GTR|A Chain A, Structural Basis Of Anticodon Loop Recognition By
Glutaminyl-Trna Synthetase
pdb|1GTS|A Chain A, Structural Basis For Transfer Rna Aminoaceylation By
Escherichia Coli Glutaminyl-Trna Synthetase
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1ZJW|A Chain A, Glutaminyl-trna Synthetase Complexed To Glutamine And
2'deoxy A76 Glutamine Trna
Length = 553
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 392 LNFTQIITNAYVGDCSVRFNLRFPT------VFSVRNRSTILGQIWSNKSEHDPGYFDKI 445
LNF I Y G C++RF+ P V S++N LG WS + YFD++
Sbjct: 49 LNFG--IAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQL 106
Query: 446 GFQSSQEVLMGLS 458
+ + + GL+
Sbjct: 107 HAYAIELINKGLA 119
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 392 LNFTQIITNAYVGDCSVRFNLRFPT------VFSVRNRSTILGQIWSNKSEHDPGYFDKI 445
LNF I Y G C++RF+ P V S++N LG WS + YFD++
Sbjct: 49 LNFG--IAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQL 106
Query: 446 GFQSSQEVLMGLS 458
+ + + GL+
Sbjct: 107 HAYAIELINKGLA 119
>pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna- Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
Length = 548
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 392 LNFTQIITNAYVGDCSVRFNLRFPT------VFSVRNRSTILGQIWSNKSEHDPGYFDKI 445
LNF I Y G C++RF+ P V S++N LG WS + YFD++
Sbjct: 50 LNFG--IAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQL 107
Query: 446 GFQSSQEVLMGLS 458
+ + + GL+
Sbjct: 108 HAYAIELINKGLA 120
>pdb|1NYL|A Chain A, Unliganded Glutaminyl-Trna Synthetase
Length = 539
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 392 LNFTQIITNAYVGDCSVRFNLRFPT------VFSVRNRSTILGQIWSNKSEHDPGYFDKI 445
LNF I Y G C++RF+ P V S++N LG WS + YFD++
Sbjct: 42 LNFG--IAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQL 99
Query: 446 GFQSSQEVLMGLS 458
+ + + GL+
Sbjct: 100 HAYAIELINKGLA 112
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 392 LNFTQIITNAYVGDCSVRFNLRFPT------VFSVRNRSTILGQIWSNKSEHDPGYFDKI 445
LNF I Y G C++RF+ P V S++N LG WS + YFD++
Sbjct: 49 LNFG--IAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQL 106
Query: 446 GFQSSQEVLMGLS 458
+ + + GL+
Sbjct: 107 HAYAIELINKGLA 119
>pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine
pdb|2RE8|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L-Glutamyl)-Sulfamoyl]adenosine
Length = 556
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 392 LNFTQIITNAYVGDCSVRFNLRFPT------VFSVRNRSTILGQIWSNKSEHDPGYFDKI 445
LNF I Y G C++RF+ P V S++N LG WS + YFD++
Sbjct: 50 LNFG--IAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQL 107
Query: 446 GFQSSQEVLMGLS 458
+ + + GL+
Sbjct: 108 HAYAIELINKGLA 120
>pdb|2X5F|A Chain A, Crystal Structure Of The Methicillin-Resistant
Staphylococcus Aureus Sar2028, An
Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate
Dependent Aminotransferase
pdb|2X5F|B Chain B, Crystal Structure Of The Methicillin-Resistant
Staphylococcus Aureus Sar2028, An
Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate
Dependent Aminotransferase
Length = 430
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 277 GLDRDKSLSVSDADQGVCSVFGFGNFKFELAFNSACYSGGNVSCSPVTENVDYLPSALLL 336
GL L V+ D + +GN+K L FN+ +G N+ P+ + + + L+
Sbjct: 125 GLSLVGDLFVNQDDTILLPEHNWGNYK--LVFNTR--NGANLQTYPIFDKDGHYTTDSLV 180
Query: 337 RKIRCVEKQKMVMLLGFLNSSIIRATFPFDPKTTLIAEGVWDDEKNQLHGVACRILNFTQ 396
++ K K++M+L + N+ P + T I E + +A +
Sbjct: 181 EALQSYNKDKVIMILNYPNNPT--GYTPTHKEVTTIVEAI--------KALANKGTKVIA 230
Query: 397 IITNAYVG 404
++ +AY G
Sbjct: 231 VVDDAYYG 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,259,282
Number of Sequences: 62578
Number of extensions: 1141983
Number of successful extensions: 1937
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1937
Number of HSP's gapped (non-prelim): 10
length of query: 987
length of database: 14,973,337
effective HSP length: 108
effective length of query: 879
effective length of database: 8,214,913
effective search space: 7220908527
effective search space used: 7220908527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)