BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046654
(987 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B4RYH7|SYQ_ALTMD Glutamine--tRNA ligase OS=Alteromonas macleodii (strain DSM 17117 /
Deep ecotype) GN=glnS PE=3 SV=1
Length = 555
Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 392 LNFTQIITNAYVGDCSVRFNLRFPT------VFSVRNRSTILGQIWSNKSEHDPGYFDKI 445
LNF I Y G C++RF+ P V S++ T LG W ++ + YFD++
Sbjct: 50 LNFG--IAEDYTGSCNLRFDDTNPAKEDITFVNSIKEDVTWLGFTWDGEARYSSNYFDQL 107
Query: 446 GFQSSQEVLMGLSGFKYRYTLVDVARKSCAIKNNVKHKGKTYPDVNS-VDMRFSMYVKNS 504
+ + + GL+ ++ DV R+ ++ +K G+ P ++ V+ + K +
Sbjct: 108 HAYAVELIEKGLAYVD--FSAQDVMRE---MRGTLKEPGQNSPYRDTDVETNLKEFAKMT 162
Query: 505 NGQISHGFAS 514
G G S
Sbjct: 163 AGDYKEGECS 172
>sp|P49699|ANDR_RABIT Androgen receptor (Fragment) OS=Oryctolagus cuniculus GN=AR PE=2
SV=1
Length = 709
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 797 LYATLPLYIAGGLSAWVVYRSRNSYHGPYIVHRHIQPLHPRRVRLN 842
L +TL LY +G L Y++R+ Y+ P + P HPRR++L
Sbjct: 148 LPSTLSLYKSGTLDEAAAYQTRDYYNFPLALAGQPPPPHPRRIKLE 193
>sp|Q6LTD1|SYQ_PHOPR Glutamine--tRNA ligase OS=Photobacterium profundum GN=glnS PE=3
SV=1
Length = 555
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 392 LNFTQIITNAYVGDCSVRFNLRFPT------VFSVRNRSTILGQIWSNKSEHDPGYFDKI 445
LNF I Y G C++RF+ P V S++N LG WS + + YFDK+
Sbjct: 51 LNFG--IAQDYQGQCNLRFDDTNPEKEDIEYVESIKNDVNWLGFDWSGEICYSSNYFDKL 108
Query: 446 -GFQSSQEVLMGLSGFKYRYTLVDVARKSCAIKNNVKHKGKTYPDVN-SVDMRFSMYVKN 503
GF V + G Y L + + N+ GK P + SV ++ K
Sbjct: 109 YGFA----VELINKGLAYVDELSPEQMRE--YRGNLTEPGKPSPYRDRSVAENLELFEKM 162
Query: 504 SNGQISHGFAS 514
NG++ G S
Sbjct: 163 KNGEVEEGIMS 173
>sp|B5FC12|SYQ_VIBFM Glutamine--tRNA ligase OS=Vibrio fischeri (strain MJ11) GN=glnS
PE=3 SV=1
Length = 552
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 392 LNFTQIITNAYVGDCSVRFNLRFPT------VFSVRNRSTILGQIWSNKSEHDPGYFDKI 445
LNF I Y G C++RF+ P V S++N LG WS ++ YFDK+
Sbjct: 50 LNFG--IAQDYQGQCNLRFDDTNPEKEDIEYVESIKNDVNWLGFQWSGDIQYSSNYFDKL 107
Query: 446 GFQSSQEVLMGLSGFKYRYTLVDVARKSCAIKNNVKHKGKTYPDVN-SVDMRFSMYVKNS 504
+ + + GL+ Y + + ++K GK P + SV+ +++ +
Sbjct: 108 YGYAVELIEKGLA-----YVDELTPEQMREYRGSLKEPGKNSPYRDRSVEENLALFEQMR 162
Query: 505 NGQISHG 511
+G+ G
Sbjct: 163 DGKFKEG 169
>sp|Q5E6P2|SYQ_VIBF1 Glutamine--tRNA ligase OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=glnS PE=3 SV=1
Length = 552
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 392 LNFTQIITNAYVGDCSVRFNLRFPT------VFSVRNRSTILGQIWSNKSEHDPGYFDKI 445
LNF I Y G C++RF+ P V S++N LG WS ++ YFDK+
Sbjct: 50 LNFG--IAQDYQGQCNLRFDDTNPEKEDIEYVESIKNDVNWLGFQWSGDIQYSSNYFDKL 107
Query: 446 GFQSSQEVLMGLSGFKYRYTLVDVARKSCAIKNNVKHKGKTYPDVN-SVDMRFSMYVKNS 504
+ + + GL+ Y + + ++K GK P + SV+ +++ +
Sbjct: 108 YGYAVELIEKGLA-----YVDELTPEQMREYRGSLKEPGKNSPYRDRSVEENLALFEQMR 162
Query: 505 NGQISHG 511
+G+ G
Sbjct: 163 DGKFKEG 169
>sp|B6EHL7|SYQ_ALISL Glutamine--tRNA ligase OS=Aliivibrio salmonicida (strain LFI1238)
GN=glnS PE=3 SV=1
Length = 552
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 392 LNFTQIITNAYVGDCSVRFNLRFPT------VFSVRNRSTILGQIWSNKSEHDPGYFDKI 445
LNF I Y G C++RF+ P V S++N LG WS + YFDK+
Sbjct: 50 LNFG--IAQDYQGQCNLRFDDTNPEKEDIEYVESIKNDVKWLGFDWSGDIHYSSNYFDKL 107
Query: 446 GFQSSQEVLMGLSGFKYRYTLVDVARKSCAIKNNVKHKGKTYPDVN-SVDMRFSMYVKNS 504
+ + + GL+ Y + + + ++K GK P + SV+ +++ +
Sbjct: 108 YDYAVELIEKGLA-----YVDELTSDQIREYRGSLKEPGKNSPYRDRSVEENLALFEQMR 162
Query: 505 NGQISHG 511
+G+ G
Sbjct: 163 DGKFKEG 169
>sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus HKU4 GN=rep PE=3 SV=1
Length = 7119
Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 676 DLEITMALILNTVACFFVGLQLFYVKKHPGVLPFISVVMLIILTLGYMIPL 726
D IT+ +N +A F GL FY +LP + +V+LI L LGYM +
Sbjct: 3773 DYTITVFATVN-LAKFISGLVFFYAPHLGFILPEVKLVLLIYLGLGYMCTM 3822
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,693,499
Number of Sequences: 539616
Number of extensions: 16169949
Number of successful extensions: 31353
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 31343
Number of HSP's gapped (non-prelim): 20
length of query: 987
length of database: 191,569,459
effective HSP length: 127
effective length of query: 860
effective length of database: 123,038,227
effective search space: 105812875220
effective search space used: 105812875220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)