Query 046654
Match_columns 987
No_of_seqs 132 out of 141
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11145 DUF2921: Protein of u 100.0 6E-225 1E-229 1998.9 74.1 862 69-956 1-908 (909)
2 PF11145 DUF2921: Protein of u 100.0 6E-38 1.3E-42 379.9 21.8 273 170-450 311-615 (909)
3 KOG0828 Predicted E3 ubiquitin 99.9 6.2E-22 1.3E-26 221.5 9.1 290 613-969 228-560 (636)
4 smart00679 CTNS Repeated motif 28.7 25 0.00054 26.2 0.6 23 863-886 3-25 (32)
5 PF06191 DUF995: Protein of un 28.7 44 0.00095 34.4 2.6 27 367-393 65-92 (145)
6 COG4068 Uncharacterized protei 21.5 1E+02 0.0023 27.4 3.1 23 28-50 34-56 (64)
7 TIGR00951 2A43 Lysosomal Cysti 18.6 24 0.00051 38.4 -1.7 84 862-952 18-101 (220)
8 PF08693 SKG6: Transmembrane a 18.6 1E+02 0.0023 25.4 2.4 20 926-945 13-32 (40)
9 PF04193 PQ-loop: PQ loop repe 14.6 73 0.0016 27.1 0.7 36 862-898 16-51 (61)
10 cd08680 C2_Kibra C2 domain fou 14.6 4.9E+02 0.011 25.6 6.6 63 585-658 8-73 (124)
No 1
>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function.
Probab=100.00 E-value=5.8e-225 Score=1998.89 Aligned_cols=862 Identities=45% Similarity=0.715 Sum_probs=753.3
Q ss_pred ccccCCCCCCCCCC--C-CCCCCCCCCCcc---cceeEe-ecCCccccCCCCCCCC-ceeeee--eeeecccCCc-EEEE
Q 046654 69 YSKHCNHIVPEPLL--D-RTNFPASPSSLR---FTTAFF-AGGDPLFISHQTIWPN-SVAFVP--HIDGKTVNST-VFKL 137 (987)
Q Consensus 69 Ys~hC~s~vP~~~~--~-~~~~~~~~~s~~---~~~GyF-sGGd~~f~~~~s~~~~-~rsfs~--~~v~rT~~~~-v~~v 137 (987)
|++||++++|+++. + .++.+. ..+++ +++||| +|||.||+.+++.... +|+|+| ++|+||++++ |+||
T Consensus 1 Y~~hC~svvp~a~~l~~~~~~~~~-~~s~~L~~~~ggyfq~GGd~Lfp~d~s~~~~~~r~~SF~~~~V~~T~~~~~vv~V 79 (909)
T PF11145_consen 1 YKRHCASVVPSASELKDDDDTRSL-LISFELSFFNGGYFQAGGDPLFPFDDSDSPSSLRSFSFWPTHVDRTTRPGKVVKV 79 (909)
T ss_pred CcccccCCCCCccccccccCcccc-cccccccCCCCCeecCCCCCCCCCCccccccccceEEEEeeeeccccCCCcEEEE
Confidence 89999999999992 2 223333 33334 499999 9999999877764222 699999 4999999999 9999
Q ss_pred EEEEEEeecCCCchhhhhhhccceeccCC--CCCCCCceEEEEEeeeeecCCCeeEEeeecCCccccC---CccccceEE
Q 046654 138 EARLSLMISPKDDANIRFRRLRMVKFRGP--RIPLRRGSASFWLSGFWSEADGKLCMVGSGSNRINSG---KSNNLNVVL 212 (987)
Q Consensus 138 ~atL~l~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~lsfvleG~wsessg~LCMVGsgS~~~~~~---~v~d~~I~L 212 (987)
+|+|+|+++|.+ +.++++. +..+++.+ ..|+++++++|.|||||+|++|+|||||+|++ ++.+ +.+|.+|+|
T Consensus 80 sg~LtL~isr~~-~~~~~~~-~~~~~~~~~~~~~pg~ssLsf~LeG~YSe~sg~LCMVGsgs~-~s~~g~~v~~~~~~vL 156 (909)
T PF11145_consen 80 SGTLTLSISRNS-ARSSYYY-YDHRRRSPEFYRWPGRSSLSFSLEGFYSEGSGVLCMVGSGSG-YSNDGPPVKLDDNAVL 156 (909)
T ss_pred EEEEEEEeecCC-CCccccc-cccccCCcceecCCCceEEEEEEEEEEEcCCCcEEEeccccc-cCCCCCceeeecceEE
Confidence 999999998763 2333321 21222222 22789999999999999999999999999985 5554 457889999
Q ss_pred EEEeccccccccccceeEEEEEecCCCCCCCccccEEEEeecCcCCcceeeeeecccCCCCCCCCc--ccccccccCCCC
Q 046654 213 KLNYSRKFNLSVFDSLVSGVLESLDFEGSESYFKPVSILGVAKLEERSYEFTLIDKGNESDFEDGL--DRDKSLSVSDAD 290 (987)
Q Consensus 213 ~LrfP~~~~~Slt~r~V~G~L~S~~~~sd~~YFd~Islls~~~~~~~~Y~YT~v~~a~k~c~~~~~--~~~k~~~~~~~~ 290 (987)
+||||++ +|||+|+|+|+|||+|+++|++|||+|+|+++++.+ ++|+|+++.++|+..+.... +...++...+.+
T Consensus 157 ~LryPk~--~sLtsr~V~G~LeS~n~~~d~~YFd~VsLls~~~~~-~~Y~Y~lv~~sc~~~~~~d~~~~~~~~~~~~~~~ 233 (909)
T PF11145_consen 157 VLRYPKP--SSLTSRFVTGELESLNSKSDSAYFDPVSLLSQLEGY-SNYEYTLVSKSCDPPPYGDGDVGDGSSLSDVYSG 233 (909)
T ss_pred EEcCCCc--ccccccceeEEEEecCCCCCccccceeEEEecCCCc-cCceEEEccccCCCCcccccccccccccccccCC
Confidence 9999999 999999999999999999999999999999999965 69999999888754333221 223445566889
Q ss_pred CCcccccccc-CceeEEEecCCCCCCCCccccCCcCCCCCCCCeeEEeeeeeccCccEEEEEEeecCCccc-----cccc
Q 046654 291 QGVCSVFGFG-NFKFELAFNSACYSGGNVSCSPVTENVDYLPSALLLRKIRCVEKQKMVMLLGFLNSSIIR-----ATFP 364 (987)
Q Consensus 291 ~~sC~~l~~~-~~~f~l~y~~~c~s~~~~~csPf~~d~~~~~~~m~~~~~~C~~~~~vr~~~vF~nvsy~~-----~~~~ 364 (987)
.++|++|.++ ..+|+|+|+|+|++++ .|+|+.+..+..+.+|+||++||+++++|||+++|+|+++.+ ..++
T Consensus 234 ~~~C~~L~~~~~~~f~l~y~~~C~st~--~~~~~~gp~~~~~~~m~~~~v~C~~~g~vrv~~vF~~~~~~e~~~~~~~r~ 311 (909)
T PF11145_consen 234 NFFCSILRRFLRGSFKLEYNWDCNSTD--ACCSFGGPFGLLPVRMHMQQVRCEEDGAVRVSAVFRNVSPSEHYYPARPRT 311 (909)
T ss_pred CCCChhhHhcCCCceEeEECCCCCCcc--cccCCCCCcccCCceEEEEeeEecCCCcEEEEEEEcCCCchhhcccccccc
Confidence 9999999766 7799999999999998 599999888888999999999999999999999999999854 3456
Q ss_pred cCCCceEEEEEEEeCCCCeEEEEeeeecccccccccccccCcceEEEEEccccceecccceEEEEEEcCCC--CCCCCCc
Q 046654 365 FDPKTTLIAEGVWDDEKNQLHGVACRILNFTQIITNAYVGDCSVRFNLRFPTVFSVRNRSTILGQIWSNKS--EHDPGYF 442 (987)
Q Consensus 365 ~~~~~~i~AEGvwd~~tg~LCmvgCr~l~~~~s~~~~~v~DC~I~lsl~FP~~~Si~~Rs~i~G~I~S~~~--~sd~~yF 442 (987)
+++++|++|||+||+++|||||||||+++++++.++..++||+|||+||||++||||+||+|+|+|||+++ .+||++|
T Consensus 312 gl~~~tLvAEG~Wd~s~gqLCmvaCrv~~~~~s~~~~~v~dC~ir~sl~FPav~SIr~RS~v~G~I~s~~~~~~~~~~~f 391 (909)
T PF11145_consen 312 GLSNMTLVAEGVWDSSSGQLCMVACRVGNSDDSLANAGVGDCSIRMSLWFPAVWSIRQRSIVVGQIWSNSQGSSNDPLYF 391 (909)
T ss_pred cccCceEEEEeeEcCCCCcEEEEeeeeccccccccccccCCCCceEEEEecCeEEEeecceEEEEEecCCccccCCCcch
Confidence 66799999999999999999999999999988889999999999999999999999999999999999999 8899999
Q ss_pred cccc-----cccccccccCcccceeeechhHHHHHhhccccccccc---CCCCCCC----CCCCceEEEEEecCCC-Ccc
Q 046654 443 DKIG-----FQSSQEVLMGLSGFKYRYTLVDVARKSCAIKNNVKHK---GKTYPDV----NSVDMRFSMYVKNSNG-QIS 509 (987)
Q Consensus 443 ~~i~-----~~s~~~~~~~~s~~kY~YT~ve~A~k~c~~~~~~k~k---g~~yP~~----~s~D~~f~~~v~~~~~-~~~ 509 (987)
+++. +.+.++...+++++||+|||+|+|+|+|+++++.++| +++||++ .++||+|+|+++++++ +++
T Consensus 392 ~~i~~~s~~~~~~~~~~~~l~~lkY~YTkvd~A~k~~~~~~~~~~kks~~~~yP~~~~~~s~sDl~fdl~v~~s~~~~~~ 471 (909)
T PF11145_consen 392 SRIVSPSELFNSFGNSSSNLSGLKYNYTKVDEAKKHCRRNEPSKFKKSLGLSYPDNLGNYSSSDLRFDLSVRNSAGPDLP 471 (909)
T ss_pred hheeeeccccccccccccCccCceeeeeeHHHHHHHHHhcCCcccccccCCCCCCccccccHhhhcccEEEeccccccCC
Confidence 9988 6666677788999999999999999999999987765 6899988 5799999999998876 799
Q ss_pred ccCCcccccccccccCCccCcCCCCCccccc-cccccCCCCC-cceeEEEEEEEeCCCCCCcCCCccccceEEEEeeeec
Q 046654 510 HGFASPLFVGDHLYQHPLSGHLHLPPLQRYT-VFAFKPNNQH-NMQNISYKMSIVPPSGFMFGGSEISEAIEISAEGVYD 587 (987)
Q Consensus 510 ~g~a~P~~vg~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~-~llNVSy~i~~~~~~~~~~g~~~~~~~~~isAEGVYd 587 (987)
||+++|++||+.++++..+...+....+... .....+++++ ++|||||+|+++ |+.. ...++||||||||
T Consensus 472 ~g~a~plslG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llNVSy~i~~~-------~~~~-~~~~~isaEGvYD 543 (909)
T PF11145_consen 472 SGYASPLSLGSLFGRGDPLSADDSFSRHAASPSSPEVTEMQHSRLLNVSYEISLS-------GSIS-SNSSQISAEGVYD 543 (909)
T ss_pred CCCcceEEECchhcccCccccCcccccccccccccccccccccceeEEEEEEEEc-------cccc-ceEEEEEEEeeee
Confidence 9999999999999987766555533311110 0111123333 799999999997 3222 2367999999999
Q ss_pred CCCCeEEEEeccccCccccccccccCCCCCceEEEEEEeeccccCCCceEEEEEEeccCCCCCCcccceeecccccch-h
Q 046654 588 RDTGVLCMRGCRNLRPSHQQMKLAKNDSLDCEIDVNFQFRALNEEDSENVKGTIESTRQKSDSLYFGRLELFSSSIYT-S 666 (987)
Q Consensus 588 ~~tG~LcMVGCR~v~~~~~~~~~~~~~~~DC~I~V~vq~pp~~~~~~~~~~G~I~S~R~~~DPL~F~~l~l~s~~~Y~-~ 666 (987)
|+||+|||||||++.++|+++ ..|+++||+|+|+|||||++++.++++||+|+|+|+|+|||||++++|+++++|. +
T Consensus 544 ~~~G~lclVGCR~v~~~~~~~--~~~~~~DC~I~V~vq~pp~~~~~~~~~kg~I~S~R~~~DpL~F~~~~l~~~~~~~~~ 621 (909)
T PF11145_consen 544 PKTGRLCLVGCRDVRLNWNIS--SNESSMDCEILVTVQFPPLDAKVNPTIKGSISSTRDKSDPLYFEPLDLSTYPIYYRK 621 (909)
T ss_pred CCCCeEEEEeccccccCcccc--ccCCCCCeeEEEEEEcCCCCCCCCCcEEEEEEeccCCCCCccccceeeeeccceecc
Confidence 999999999999999999884 3389999999999999999999999999999999999999999999999999755 5
Q ss_pred hhhhceecchhHHHHHHHHhHHHHHHHhhhhhccccCCCCCCchhHHHHHHHHHhhcccccccHHHhhcccccccceecc
Q 046654 667 QAKESVWRMDLEITMALILNTVACFFVGLQLFYVKKHPGVLPFISVVMLIILTLGYMIPLLLNFEALFKANHNQQNLFLG 746 (987)
Q Consensus 667 q~~~~i~Rmd~E~im~~~s~tLsc~~~~~Ql~h~k~~pd~~P~iSlvML~vlaLGy~~PLv~~~EaLF~~~~~~~~~~~~ 746 (987)
|+.++|||||||+||+++++||+|+|+++||+|+|||||++|+|||+||+|||||||+|||+||||||+.++++|+++++
T Consensus 622 q~~~~i~R~d~E~i~~~~s~tl~~~~~~~QL~~~k~~~~~~P~iSlvML~v~aLGy~~pLv~n~EaLf~~~~~~~~~~~~ 701 (909)
T PF11145_consen 622 QAEESIWRMDLEGIMRVISLTLSCVFIGLQLFHVKKHPDVLPYISLVMLGVQALGYMIPLVLNFEALFKSSHNRQNIFLD 701 (909)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccchHhHHHHHHHHHhccchhhcCHHHHcCcCCCCceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccc--cccceEEEEeehHHHhhhheeeeeeeccCCCCC-
Q 046654 747 SGGWLEANEIIVRMVTMVAFLLQFRLLQLTWSARQGNGSQNETW--ISERKVLYATLPLYIAGGLSAWVVYRSRNSYHG- 823 (987)
Q Consensus 747 ~~~wlevne~~vr~ltmvAflL~lRLlqlvw~aR~~~~~~~~~~--~se~kvl~~~l~ly~~G~li~~~~h~~~~~~~~- 823 (987)
+++|+|+||++||++|||||||||||+|||||||+++.+++..| ++||||||+|+|+|++|+||+|++|..+++.+.
T Consensus 702 ~~~w~e~~e~~vr~ltmvAflL~lRL~qlvw~aR~~~~~~~~~~~~~sek~vl~~~l~ly~~G~li~l~~h~~~~~~~~~ 781 (909)
T PF11145_consen 702 SGGWLEVNEVMVRLLTMVAFLLQLRLLQLVWSARIRDGARKPLEPWPSEKKVLYICLPLYIAGGLIALIVHASKTNSRRA 781 (909)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccceEEEEEeHHHHHHHHHhhhhhhhccccccc
Confidence 99999999999999999999999999999999999999888877 999999999999999999999999999774211
Q ss_pred CceeccccCCCCCccccccccchhHHHHHHhHHhhhhcchhhHHHHhhhcCCCCCCCcccceeecceeecccceeeeecc
Q 046654 824 PYIVHRHIQPLHPRRVRLNWQHSLWADLKSYGGLILDGFLLPQILFNMFNNSTEKTMAAPFYIGTTVVRLLPHAYDLYRA 903 (987)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~y~GLvlD~FLLPQIi~N~~~~s~~kpLs~~fYvG~T~vRllpH~Yd~~r~ 903 (987)
... ..+......++++.|+||++|+|||||||||||||+|++|++|+|||+++||+|+|++|||||+||++|+
T Consensus 782 ~~~-------~~~~~~~~~~~~~~~~~l~~y~GLv~D~FLLPQii~N~~~~~~~~~Ls~~fY~G~T~~Rllph~Yd~~r~ 854 (909)
T PF11145_consen 782 RRE-------ESYDSRISHQQHSWWEDLKSYAGLVLDGFLLPQIIGNAFWQSKVKPLSKSFYVGTTLVRLLPHVYDLYRA 854 (909)
T ss_pred ccc-------cccccccccccccHHHHHHHhhhHHHhhhhHHHHHHHHHhccCCcccccceeehHHHHHHHHHHHhhccc
Confidence 111 1111223566889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC-CcccccCCCCCCccccccEEeehHHHHHHHHHHHHhHhCCceecc
Q 046654 904 NTSSWYPD-WSYIYANPKMDFYSTAWDIIIPCGGLLFAALIYLQQQNGGRCILP 956 (987)
Q Consensus 904 ~~~~~~~~-~s~~ya~p~~dfys~awdi~Ip~~a~llA~~v~lQQr~gg~~~~p 956 (987)
++++|+++ ++|+||||++|||++||||||||+|++||++||+||||||+||+|
T Consensus 855 ~~~~~~~~~~~~~ya~~~~dfys~awDi~Ip~~a~llA~~v~~QQr~~~~~~~~ 908 (909)
T PF11145_consen 855 PNYVPYFDDESYVYANPRMDFYSTAWDIVIPCGAVLLAALVYLQQRWGGRCILP 908 (909)
T ss_pred cccCcccccccccccCccccccccccceeeehHHHHHHHHHHHHhhhCCeeecc
Confidence 99999998 999999999999999999999999999999999999999999997
No 2
>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function.
Probab=100.00 E-value=6e-38 Score=379.94 Aligned_cols=273 Identities=20% Similarity=0.295 Sum_probs=202.1
Q ss_pred CCCceEEEEEeeeeecCCCeeEEeeecC----CccccCCccccceEEEEEeccccccccccc-eeEEEEEecCC--CCCC
Q 046654 170 LRRGSASFWLSGFWSEADGKLCMVGSGS----NRINSGKSNNLNVVLKLNYSRKFNLSVFDS-LVSGVLESLDF--EGSE 242 (987)
Q Consensus 170 ~~~~~lsfvleG~wsessg~LCMVGsgS----~~~~~~~v~d~~I~L~LrfP~~~~~Slt~r-~V~G~L~S~~~--~sd~ 242 (987)
.+-..+++++||+||+++|+||||||+- .+.++..++||+|+|.||||++ |||++| .|.|+|||++. .+++
T Consensus 311 ~gl~~~tLvAEG~Wd~s~gqLCmvaCrv~~~~~s~~~~~v~dC~ir~sl~FPav--~SIr~RS~v~G~I~s~~~~~~~~~ 388 (909)
T PF11145_consen 311 TGLSNMTLVAEGVWDSSSGQLCMVACRVGNSDDSLANAGVGDCSIRMSLWFPAV--WSIRQRSIVVGQIWSNSQGSSNDP 388 (909)
T ss_pred ccccCceEEEEeeEcCCCCcEEEEeeeeccccccccccccCCCCceEEEEecCe--EEEeecceEEEEEecCCccccCCC
Confidence 4556899999999999999999999962 1234458899999999999999 999997 99999999998 8899
Q ss_pred CccccEEEEe-----ecC----cCCcceeeeeecccCCCCCCCCcccccc-cccCCCCC---CccccccccCceeEEEec
Q 046654 243 SYFKPVSILG-----VAK----LEERSYEFTLIDKGNESDFEDGLDRDKS-LSVSDADQ---GVCSVFGFGNFKFELAFN 309 (987)
Q Consensus 243 ~YFd~Islls-----~~~----~~~~~Y~YT~v~~a~k~c~~~~~~~~k~-~~~~~~~~---~sC~~l~~~~~~f~l~y~ 309 (987)
.||+.|--.+ +.. .++.+|+||++++|+|.|..+++...|+ +.+.||++ ++.+ ++++.+.+...
T Consensus 389 ~~f~~i~~~s~~~~~~~~~~~~l~~lkY~YTkvd~A~k~~~~~~~~~~kks~~~~yP~~~~~~s~s---Dl~fdl~v~~s 465 (909)
T PF11145_consen 389 LYFSRIVSPSELFNSFGNSSSNLSGLKYNYTKVDEAKKHCRRNEPSKFKKSLGLSYPDNLGNYSSS---DLRFDLSVRNS 465 (909)
T ss_pred cchhheeeeccccccccccccCccCceeeeeeHHHHHHHHHhcCCcccccccCCCCCCccccccHh---hhcccEEEecc
Confidence 9998887222 211 1347899999999999998765433332 23569987 2333 55666677665
Q ss_pred CCCCCCCCccccCCcCCCCC-CCCeeEEeeeeeccC------ccEEEE-EEeecCCccc---cccccCCCceEEEEEEEe
Q 046654 310 SACYSGGNVSCSPVTENVDY-LPSALLLRKIRCVEK------QKMVML-LGFLNSSIIR---ATFPFDPKTTLIAEGVWD 378 (987)
Q Consensus 310 ~~c~s~~~~~csPf~~d~~~-~~~~m~~~~~~C~~~------~~vr~~-~vF~nvsy~~---~~~~~~~~~~i~AEGvwd 378 (987)
.+++-..+ ++.|++.|..+ .++.+..++....+. ..++.. ....|+||.- .... .....|+|||+||
T Consensus 466 ~~~~~~~g-~a~plslG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llNVSy~i~~~~~~~-~~~~~isaEGvYD 543 (909)
T PF11145_consen 466 AGPDLPSG-YASPLSLGSLFGRGDPLSADDSFSRHAASPSSPEVTEMQHSRLLNVSYEISLSGSIS-SNSSQISAEGVYD 543 (909)
T ss_pred ccccCCCC-CcceEEECchhcccCccccCcccccccccccccccccccccceeEEEEEEEEccccc-ceEEEEEEEeeee
Confidence 54332221 57899865443 444555555543221 122222 2477888752 1222 2688999999999
Q ss_pred CCCCeEEEEeeeecccccc-cccccccCcceEEEEEccccceecccceEEEEEEcCCCCCCCCCccccccccc
Q 046654 379 DEKNQLHGVACRILNFTQI-ITNAYVGDCSVRFNLRFPTVFSVRNRSTILGQIWSNKSEHDPGYFDKIGFQSS 450 (987)
Q Consensus 379 ~~tg~LCmvgCr~l~~~~s-~~~~~v~DC~I~lsl~FP~~~Si~~Rs~i~G~I~S~~~~sd~~yF~~i~~~s~ 450 (987)
+++|+|||||||.+..... ..+.+..||+|.|+++||++ +.+...+++|+|+|+|+|+||+||+++++++.
T Consensus 544 ~~~G~lclVGCR~v~~~~~~~~~~~~~DC~I~V~vq~pp~-~~~~~~~~kg~I~S~R~~~DpL~F~~~~l~~~ 615 (909)
T PF11145_consen 544 PKTGRLCLVGCRDVRLNWNISSNESSMDCEILVTVQFPPL-DAKVNPTIKGSISSTRDKSDPLYFEPLDLSTY 615 (909)
T ss_pred CCCCeEEEEeccccccCccccccCCCCCeeEEEEEEcCCC-CCCCCCcEEEEEEeccCCCCCccccceeeeec
Confidence 9999999999999854332 23334589999999999999 57889999999999999999999999999886
No 3
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.2e-22 Score=221.47 Aligned_cols=290 Identities=17% Similarity=0.265 Sum_probs=194.1
Q ss_pred CCCCCceEEEEEEeecccc--CC-------CceEEEEEEeccCCCCCCcccceeeccccc-----chhhhhhceecchhH
Q 046654 613 NDSLDCEIDVNFQFRALNE--ED-------SENVKGTIESTRQKSDSLYFGRLELFSSSI-----YTSQAKESVWRMDLE 678 (987)
Q Consensus 613 ~~~~DC~I~V~vq~pp~~~--~~-------~~~~~G~I~S~R~~~DPL~F~~l~l~s~~~-----Y~~q~~~~i~Rmd~E 678 (987)
+..+.|+|+...|...+++ .| .....|-.++..-..+|-||-++.|.+... |.+.++.
T Consensus 228 eme~~~N~~t~~qi~~~~s~eN~~~~~~~n~~q~~pl~~vsgl~yspDC~v~l~l~ntkg~~~vl~n~aVr~-------- 299 (636)
T KOG0828|consen 228 EMEKHCNIETAAQISTLKSSENEFYNGDKNSYQKEPLMEVSGLVYSPDCFVPLTLNNTKGNVEVLYNKAVRY-------- 299 (636)
T ss_pred HHHHhhhhHHHHHHHHhhhhhccccCCCcchhcCCceecccCcccCCCcCcceeeeccccchhhhhhhhHHH--------
Confidence 4457899999999998873 22 245667777766667899999999988642 4454444
Q ss_pred HHHHHHHhHHHHHHHhhhhhccccCCCCCCchhHHHHHHHHH--hhcccccccH----HHhhcccccccceeccCCCcch
Q 046654 679 ITMALILNTVACFFVGLQLFYVKKHPGVLPFISVVMLIILTL--GYMIPLLLNF----EALFKANHNQQNLFLGSGGWLE 752 (987)
Q Consensus 679 ~im~~~s~tLsc~~~~~Ql~h~k~~pd~~P~iSlvML~vlaL--Gy~~PLv~~~----EaLF~~~~~~~~~~~~~~~wle 752 (987)
+.|..+...-+-+.+.+|+.|-. |...-++|++|+++||+ ||++-|++.+ |.||.... +..++
T Consensus 300 tll~~~~~~~~~~~Ll~q~~~~s--ps~v~rlSf~~i~mqa~mD~~Lall~lta~~vve~lylpfv--------taAF~- 368 (636)
T KOG0828|consen 300 TLLYIFIVLSQIFLLLRQMRINS--PSHVQRLSFLTIAMQAGMDAYLALLFLTANAVVESLYLPFV--------TAAFF- 368 (636)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC--chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHH-
Confidence 22222211112222234544432 66667889999999999 9999998877 66666331 22222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc---------cCCCC-------CCccccccceEEEEeehHHHhhhheeeeeee
Q 046654 753 ANEIIVRMVTMVAFLLQFRLLQLTWSAR---------QGNGS-------QNETWISERKVLYATLPLYIAGGLSAWVVYR 816 (987)
Q Consensus 753 vne~~vr~ltmvAflL~lRLlqlvw~aR---------~~~~~-------~~~~~~se~kvl~~~l~ly~~G~li~~~~h~ 816 (987)
+++ ++-++++|+|..+||.. ++..+ .++..+-|.+ .|- .-+.|+++.+++-.
T Consensus 369 ------~fV--~~siFemRYLlsI~k~q~~~~~~~a~Rp~T~~~~~n~~r~~~~~~e~s-~~g---~l~grf~fm~lv~~ 436 (636)
T KOG0828|consen 369 ------KFV--VFSIFEMRYLLSIWKVQNSNMPPPATRPSTSNSSNNNTRQSNASNENS-PWG---ILLGRFLFMYLVVC 436 (636)
T ss_pred ------HHH--HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCccccCcccccccccCC-cch---hhHHhHHHHHHHHH
Confidence 343 66699999999999944 33221 0111122322 221 11122333232221
Q ss_pred ccCCCCCCceeccccCCCCCccccccccchhH----HHHHHhHH-hhhhcchhhHHHHhhhcCCCCCCCcccceeeccee
Q 046654 817 SRNSYHGPYIVHRHIQPLHPRRVRLNWQHSLW----ADLKSYGG-LILDGFLLPQILFNMFNNSTEKTMAAPFYIGTTVV 891 (987)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W----~~l~~y~G-LvlD~FLLPQIi~N~~~~s~~kpLs~~fYvG~T~v 891 (987)
...- ....| ...-+|+- ++...||+|||+.|++.+-.+|||.+.|.+|+|++
T Consensus 437 ~~~l-----------------------~s~~wp~q~r~yf~~iLif~~~SfWIPQIv~Nvvrg~SR~Pl~w~yIlG~Tv~ 493 (636)
T KOG0828|consen 437 IASL-----------------------YSAFWPVQFRNYFIPILIFMYYSFWIPQIVANVVRGDSRKPLHWYYILGMTVT 493 (636)
T ss_pred HHHh-----------------------hccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCCcchhhhhhHhHH
Confidence 1000 01234 23344555 44569999999999999655899999999999999
Q ss_pred ecccceeeeeccCCCCCCCCCcccccCCCCCCccccccEEeehHHHHHHHHHHHHhHhCCceecccccc--ccceEEeee
Q 046654 892 RLLPHAYDLYRANTSSWYPDWSYIYANPKMDFYSTAWDIIIPCGGLLFAALIYLQQQNGGRCILPRRFR--EIVAYEKIP 969 (987)
Q Consensus 892 RllpH~Yd~~r~~~~~~~~~~s~~ya~p~~dfys~awdi~Ip~~a~llA~~v~lQQr~gg~~~~p~r~r--~~~~ye~v~ 969 (987)
||+|++|-+.++.++ +...| ..+|.+-+.++++.++.++++|..+|+|||+||++. +++||+++.
T Consensus 494 Rl~~plyVF~~s~n~--------~r~~p-----~~~f~v~L~lwmlFQv~vLl~Qd~lGsR~FlPkk~lpe~YsY~r~l~ 560 (636)
T KOG0828|consen 494 RLAIPLYVFGCSENF--------MRVEP-----KYFFAVGLVLWMLFQVLVLLVQDYLGSRCFLPKKFLPEKYSYHRRLQ 560 (636)
T ss_pred hhhcceEEEecchhh--------hccCC-----chhhHHHHHHHHHHHHHHHHHHhhcccccccchhhCccccccccccc
Confidence 999999999999983 55566 578999999999999999999999999999999987 667776654
No 4
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=28.74 E-value=25 Score=26.25 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.6
Q ss_pred hhhHHHHhhhcCCCCCCCccccee
Q 046654 863 LLPQILFNMFNNSTEKTMAAPFYI 886 (987)
Q Consensus 863 LLPQIi~N~~~~s~~kpLs~~fYv 886 (987)
.+|||+.|.-.++ ++-|+..|++
T Consensus 3 ~~PQi~~~~~~ks-~~glS~~~~~ 25 (32)
T smart00679 3 LLPQIIKNYRRKS-TEGLSILFVL 25 (32)
T ss_pred chhHHHHHHHcCC-cCcCCHHHHH
Confidence 5899999998887 7888888775
No 5
>PF06191 DUF995: Protein of unknown function (DUF995); InterPro: IPR009337 This is a family of uncharacterised Proteobacteria proteins.
Probab=28.69 E-value=44 Score=34.44 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=21.7
Q ss_pred CCceEEEEEEEeCC-CCeEEEEeeeecc
Q 046654 367 PKTTLIAEGVWDDE-KNQLHGVACRILN 393 (987)
Q Consensus 367 ~~~~i~AEGvwd~~-tg~LCmvgCr~l~ 393 (987)
.+..=.|||.|.-+ +|+|||.+--.-.
T Consensus 65 ~~~~s~g~GrW~Vt~~GklC~~a~W~~~ 92 (145)
T PF06191_consen 65 KGSESYGEGRWFVTDNGKLCFRATWHSK 92 (145)
T ss_pred CCcceeeeeEEEECCCCCEEEEeEEECC
Confidence 44677899999997 5899999987543
No 6
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=21.52 E-value=1e+02 Score=27.35 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=15.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhh
Q 046654 28 QRQRQRQRRSLLLLLGMSFSLLT 50 (987)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~ 50 (987)
+..|||+|+|.+.|+..+-|++.
T Consensus 34 ~ker~R~r~~~~~~~li~aLi~v 56 (64)
T COG4068 34 NKERKRQRNFMILMFLILALILV 56 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888866555555443
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=18.60 E-value=24 Score=38.39 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=52.9
Q ss_pred chhhHHHHhhhcCCCCCCCcccceeecceeecccceeeeeccCCCCCCCCCcccccCCCCCCccccccEEeehHHHHHHH
Q 046654 862 FLLPQILFNMFNNSTEKTMAAPFYIGTTVVRLLPHAYDLYRANTSSWYPDWSYIYANPKMDFYSTAWDIIIPCGGLLFAA 941 (987)
Q Consensus 862 FLLPQIi~N~~~~s~~kpLs~~fYvG~T~vRllpH~Yd~~r~~~~~~~~~~s~~ya~p~~dfys~awdi~Ip~~a~llA~ 941 (987)
-.+|||+.|.-.++ ++-||..|+.=-++.=..=-+|...+- +.|...+.|.+.+|. =...|+++-+-++++.+
T Consensus 18 ~~~PQi~~n~k~ks-~~GlS~~~~~l~~~g~~~~~~yn~~~~--~~~~~~~~~~~~~~~----v~~edl~~ai~~~il~~ 90 (220)
T TIGR00951 18 SFYPQIIKNWRRKS-AEGLSFDFVMLNLVGFTAYVIFNFLQL--YCWSITNEFPLSSPG----VTQNDVFFTLHAILICF 90 (220)
T ss_pred HHhhHHHHHHhccc-cCCcCHHHHHHHHHHHHHHHHHHHHHh--cchhhhhccccccCC----CcHHHHHHHHHHHHHHH
Confidence 35899999998888 889999888744333322233432221 112233445555543 12357778888899999
Q ss_pred HHHHHhHhCCc
Q 046654 942 LIYLQQQNGGR 952 (987)
Q Consensus 942 ~v~lQQr~gg~ 952 (987)
+++.|..+..+
T Consensus 91 l~~~q~~~~~~ 101 (220)
T TIGR00951 91 IVLHQCGDYER 101 (220)
T ss_pred HHHHHHhhccc
Confidence 99999877643
No 8
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=18.58 E-value=1e+02 Score=25.36 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=15.5
Q ss_pred ccccEEeehHHHHHHHHHHH
Q 046654 926 TAWDIIIPCGGLLFAALIYL 945 (987)
Q Consensus 926 ~awdi~Ip~~a~llA~~v~l 945 (987)
.|--|+||++.++++++++|
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l 32 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFL 32 (40)
T ss_pred EEEEEEechHHHHHHHHHHh
Confidence 34678999998888877765
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=14.64 E-value=73 Score=27.08 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=26.7
Q ss_pred chhhHHHHhhhcCCCCCCCcccceeecceeeccccee
Q 046654 862 FLLPQILFNMFNNSTEKTMAAPFYIGTTVVRLLPHAY 898 (987)
Q Consensus 862 FLLPQIi~N~~~~s~~kpLs~~fYvG~T~vRllpH~Y 898 (987)
-.+|||+.|.-.++ .+-|+.+++.-.++.-++--+|
T Consensus 16 ~~lPQi~~~~k~ks-~~glS~~~~~l~~~g~~~~~~~ 51 (61)
T PF04193_consen 16 SFLPQIIKNYKRKS-TGGLSLWFLLLWLIGSILWVLY 51 (61)
T ss_pred HHHhHHHHHHHccc-cccccHHHHHHHHHHHHHHHHH
Confidence 46899999999988 7999988876665544444333
No 10
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=14.64 E-value=4.9e+02 Score=25.65 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=37.5
Q ss_pred eecCCCCeEE--EEeccccCccccccccccCCCCCceEEEEEEeeccccCCCceEEEEEEeccCCC-CCCcccceee
Q 046654 585 VYDRDTGVLC--MRGCRNLRPSHQQMKLAKNDSLDCEIDVNFQFRALNEEDSENVKGTIESTRQKS-DSLYFGRLEL 658 (987)
Q Consensus 585 VYd~~tG~Lc--MVGCR~v~~~~~~~~~~~~~~~DC~I~V~vq~pp~~~~~~~~~~G~I~S~R~~~-DPL~F~~l~l 658 (987)
-||+.+|+|. .+.||++.. .+.+.+|+.-|+++.=|...+....-| +++.+++ +|-|=|...+
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~--------~~~~~~~dpyVKv~Llp~~~~~~~~~k---T~v~~~t~nPvfnE~F~f 73 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSA--------LSIPENSKVYVRVALLPCSSSTSCLFR---TKALEDQDKPVFNEVFRV 73 (124)
T ss_pred EECCCCCEEEEEEeEecCCcc--------cccCCCCCeEEEEEEccCCCCCCceEE---cCccCCCCCCccccEEEE
Confidence 3999999886 578888852 234456777777777665533211122 3344444 6776666654
Done!