Query 046654
Match_columns 987
No_of_seqs 132 out of 141
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 04:46:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4e_A Sodium/hydrogen exchang 19.4 15 0.00052 26.6 -0.9 16 862-877 10-25 (27)
2 2ebo_A Ebola virus envelope gl 17.8 42 0.0014 28.7 1.2 16 940-955 32-47 (74)
3 3nfg_A DNA-directed RNA polyme 10.5 1.2E+02 0.004 28.4 2.1 16 583-598 76-91 (102)
4 3nff_A RNA polymerase I subuni 8.0 1.6E+02 0.0056 28.3 2.1 15 583-597 76-90 (122)
5 1ebo_A Ebola virus envelope pr 7.6 1.2E+02 0.0042 28.4 1.0 14 941-954 70-83 (131)
6 2kkt_A Ataxin-7-like protein 3 4.2 1.8E+02 0.0062 26.2 -0.0 13 583-595 17-29 (84)
7 3iyj_F Major capsid protein L1 3.6 3.5E+02 0.012 31.3 1.6 14 377-390 145-158 (495)
8 2r5i_A L1 protein; HPV18, pent 3.6 3.1E+02 0.011 31.3 1.1 14 377-390 130-143 (428)
9 3oae_A Late major capsid prote 3.5 3.1E+02 0.01 31.3 1.0 14 377-390 132-145 (428)
10 1dzl_A Late major capsid prote 3.2 3.5E+02 0.012 31.5 1.0 14 377-390 149-162 (505)
No 1
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=19.39 E-value=15 Score=26.61 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=11.9
Q ss_pred chhhHHHHhhhcCCCC
Q 046654 862 FLLPQILFNMFNNSTE 877 (987)
Q Consensus 862 FLLPQIi~N~~~~s~~ 877 (987)
+|||+||.|+--..+.
T Consensus 10 ~LLPPII~~aGy~l~~ 25 (27)
T 1y4e_A 10 FLLPPIILDAGYFLPL 25 (27)
T ss_dssp HHSCCSSHHHHTTGGG
T ss_pred eccCccEeeccccccC
Confidence 6899999987555433
No 2
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=17.83 E-value=42 Score=28.73 Aligned_cols=16 Identities=38% Similarity=0.713 Sum_probs=12.3
Q ss_pred HHHHHHHhHhCCceec
Q 046654 940 AALIYLQQQNGGRCIL 955 (987)
Q Consensus 940 A~~v~lQQr~gg~~~~ 955 (987)
-++=|+-|||||.|-+
T Consensus 32 ~aidfll~rwggtc~i 47 (74)
T 2ebo_A 32 KAIDFLLQRWGGTCHI 47 (74)
T ss_dssp HHHHHHHGGGTCHHHH
T ss_pred HHHHHHHHHhCCccee
Confidence 3567899999988654
No 3
>3nfg_A DNA-directed RNA polymerase I subunit RPA49; triple barrel, transcription, dimerization; 2.51A {Candida glabrata}
Probab=10.52 E-value=1.2e+02 Score=28.40 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=13.1
Q ss_pred eeeecCCCCeEEEEec
Q 046654 583 EGVYDRDTGVLCMRGC 598 (987)
Q Consensus 583 EGVYd~~tG~LcMVGC 598 (987)
=|||||+||+|=++==
T Consensus 76 VgVyDp~t~~lel~~A 91 (102)
T 3nfg_A 76 VGLYDKQSGKINLYRA 91 (102)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCeEEEEEe
Confidence 4999999999977643
No 4
>3nff_A RNA polymerase I subunit A49; tripple barrel, transcription, dimerization; 3.24A {Candida glabrata}
Probab=8.00 E-value=1.6e+02 Score=28.25 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=12.6
Q ss_pred eeeecCCCCeEEEEe
Q 046654 583 EGVYDRDTGVLCMRG 597 (987)
Q Consensus 583 EGVYd~~tG~LcMVG 597 (987)
=|||||+||+|=++=
T Consensus 76 VgVyDP~T~~leL~~ 90 (122)
T 3nff_A 76 VGLYDKQSGKINLYR 90 (122)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEcCCCCeEEEEE
Confidence 499999999997654
No 5
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=7.63 E-value=1.2e+02 Score=28.38 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=11.2
Q ss_pred HHHHHHhHhCCcee
Q 046654 941 ALIYLQQQNGGRCI 954 (987)
Q Consensus 941 ~~v~lQQr~gg~~~ 954 (987)
|+=||=|||||.|-
T Consensus 70 AIDFLL~RWGGTC~ 83 (131)
T 1ebo_A 70 AIDFLLQRWGGTCH 83 (131)
T ss_dssp HHHHHTGGGTCHHH
T ss_pred HHHHHHHHhCCcce
Confidence 56788999998764
No 6
>2kkt_A Ataxin-7-like protein 3; zinc finger, transcription, activator, alternative splicing, chromatin regulator, metal-binding, nucleus; NMR {Homo sapiens}
Probab=4.23 E-value=1.8e+02 Score=26.16 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=11.0
Q ss_pred eeeecCCCCeEEE
Q 046654 583 EGVYDRDTGVLCM 595 (987)
Q Consensus 583 EGVYd~~tG~LcM 595 (987)
=||.+++||++|-
T Consensus 17 CGVi~~~t~k~CT 29 (84)
T 2kkt_A 17 CGVISEHTKKMCT 29 (84)
T ss_dssp CCCCBTTTTBSCC
T ss_pred cceEcCCCCCccc
Confidence 3899999999984
No 7
>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single cryo-EM, high resolution, late protein, VIR virus; 4.20A {Bovine papillomavirus type 1}
Probab=3.62 E-value=3.5e+02 Score=31.31 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=12.8
Q ss_pred EeCCCCeEEEEeee
Q 046654 377 WDDEKNQLHGVACR 390 (987)
Q Consensus 377 wd~~tg~LCmvgCr 390 (987)
.|+|..|||+|||.
T Consensus 145 ~DpKQ~QlfIVGC~ 158 (495)
T 3iyj_F 145 LDAKQQQILLLGCT 158 (495)
T ss_dssp EECCCEEEEEEESS
T ss_pred cCcceeeEEEEecc
Confidence 47999999999997
No 8
>2r5i_A L1 protein; HPV18, pentamer, structure, type specific epitope, capsid, capsid protein, virion; 3.40A {Human papillomavirus type 18} PDB: 3ofl_A*
Probab=3.57 E-value=3.1e+02 Score=31.26 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=12.9
Q ss_pred EeCCCCeEEEEeee
Q 046654 377 WDDEKNQLHGVACR 390 (987)
Q Consensus 377 wd~~tg~LCmvgCr 390 (987)
.|+|..|||+|||.
T Consensus 130 ~DpKQ~Ql~ivGC~ 143 (428)
T 2r5i_A 130 VDYKQTQLCILGCA 143 (428)
T ss_dssp EECCEEEEEEEESS
T ss_pred cCccceeEEEEecc
Confidence 57999999999997
No 9
>3oae_A Late major capsid protein L1; jelly roll, receptor HSPG, virus capsid, VIR protein; HET: JHM IDS; 2.80A {Human papillomavirus} PDB: 2r5h_A 2r5j_A 2r5k_A
Probab=3.52 E-value=3.1e+02 Score=31.32 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=12.9
Q ss_pred EeCCCCeEEEEeee
Q 046654 377 WDDEKNQLHGVACR 390 (987)
Q Consensus 377 wd~~tg~LCmvgCr 390 (987)
.|+|..|||+|||.
T Consensus 132 ~DpKQ~QlfIVGC~ 145 (428)
T 3oae_A 132 MDYKQTQLCLIGCK 145 (428)
T ss_dssp EBCCEEEEEEEESS
T ss_pred cCccceeEEEEecc
Confidence 57999999999997
No 10
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human papillomavirus type 16} SCOP: b.121.6.1
Probab=3.17 E-value=3.5e+02 Score=31.46 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=12.9
Q ss_pred EeCCCCeEEEEeee
Q 046654 377 WDDEKNQLHGVACR 390 (987)
Q Consensus 377 wd~~tg~LCmvgCr 390 (987)
.|+|..|||+|||.
T Consensus 149 ~DpKQ~Ql~ivGC~ 162 (505)
T 1dzl_A 149 MDYKQTQLCLIGCK 162 (505)
T ss_dssp EBCCEEEEEEEESS
T ss_pred cCccceeEEEEecc
Confidence 57999999999997
Done!