BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046655
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 120 LLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGR 179
+LSG IP EI ++ L L L + ++G IP E+G LR L LDLS N L G IP +
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 180 LSKLEILNLSSNDL 193
L+ L ++LS+N+L
Sbjct: 700 LTMLTEIDLSNNNL 713
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 43/72 (59%)
Query: 120 LLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGR 179
+L G IP E+ V L+TL L + LTG IP + NL + LS+N L+G IP +GR
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 180 LSKLEILNLSSN 191
L L IL LS+N
Sbjct: 510 LENLAILKLSNN 521
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 121 LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRL 180
L+G IPS ++ + L + L ++ LTG IP +GRL NL L LS+N SG IP LG
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 181 SKLEILNLSSN 191
L L+L++N
Sbjct: 535 RSLIWLDLNTN 545
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 121 LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIP 174
+SGSIP E+ + L L+L S+ L G IP M L L +DLS+N LSG IP
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 117 SNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPT 176
SN L+G IP I + L L+L ++S +G IP E+G R+L+ LDL+ N +G IP
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 177 LGRLS 181
+ + S
Sbjct: 555 MFKQS 559
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 32/54 (59%)
Query: 135 LQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNL 188
LQ L L ++ TG IP + LV L LS NYLSG IP +LG LSKL L L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 138 LELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
L++ + L+G IP E+G + L L+L N +SG IP +G L L IL+LSSN L
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 38/77 (49%)
Query: 117 SNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPT 176
N +G IP ++ S L +L L + L+G IP +G L L L L N L G IP
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 177 LGRLSKLEILNLSSNDL 193
L + LE L L NDL
Sbjct: 459 LMYVKTLETLILDFNDL 475
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
++ LD+S N LSGYIP +G + L ILNL ND+
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 110 LKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYL 169
LK I N + SG + +++ L+ L++ S++ + IP +G L HLD+S N L
Sbjct: 177 LKHLAISGNKI-SGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 170 SGYIPPTLGRLSKLEILNLSSNDL 193
SG + ++L++LN+SSN
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQF 256
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 93 DNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE 152
+ ++G+ R +C LK I SN + G IP + LQ L L + TG IP
Sbjct: 230 NKLSGDFSRAISTC-TELKLLNISSNQFV-GPIPP--LPLKSLQYLSLAENKFTGEIPDF 285
Query: 153 M-GRLRNLVHLDLSDNYLSGYIPPTLG 178
+ G L LDLS N+ G +PP G
Sbjct: 286 LSGACDTLTGLDLSGNHFYGAVPPFFG 312
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 93 DNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE 152
+ TGE+ F L + N+ G++P + S+L++L L S++ +G +P++
Sbjct: 276 NKFTGEIPDFLSGACDTLTGLDLSGNHFY-GAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 153 -MGRLRNLVHLDLSDNYLSGYIPPTLGRLS-KLEILNLSSNDL 193
+ ++R L LDLS N SG +P +L LS L L+LSSN+
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 377
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 121 LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR 157
L G IP ++A++ML ++L +++L+G IP EMG+
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFE 724
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 159 LVHLDLSDNYLSGYIPP--TLGRLSKLEILNLSSNDL 193
L LDLS N LSG + +LG S L+ LN+SSN L
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 135
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 120 LLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGR 179
+LSG IP EI ++ L L L + ++G IP E+G LR L LDLS N L G IP +
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 180 LSKLEILNLSSNDL 193
L+ L ++LS+N+L
Sbjct: 703 LTMLTEIDLSNNNL 716
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 43/72 (59%)
Query: 120 LLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGR 179
+L G IP E+ V L+TL L + LTG IP + NL + LS+N L+G IP +GR
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 180 LSKLEILNLSSN 191
L L IL LS+N
Sbjct: 513 LENLAILKLSNN 524
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 121 LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRL 180
L+G IPS ++ + L + L ++ LTG IP +GRL NL L LS+N SG IP LG
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 181 SKLEILNLSSN 191
L L+L++N
Sbjct: 538 RSLIWLDLNTN 548
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 121 LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIP 174
+SGSIP E+ + L L+L S+ L G IP M L L +DLS+N LSG IP
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 117 SNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPT 176
SN L+G IP I + L L+L ++S +G IP E+G R+L+ LDL+ N +G IP
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 177 LGRLS 181
+ + S
Sbjct: 558 MFKQS 562
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 32/54 (59%)
Query: 135 LQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNL 188
LQ L L ++ TG IP + LV L LS NYLSG IP +LG LSKL L L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 138 LELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
L++ + L+G IP E+G + L L+L N +SG IP +G L L IL+LSSN L
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 38/77 (49%)
Query: 117 SNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPT 176
N +G IP ++ S L +L L + L+G IP +G L L L L N L G IP
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 177 LGRLSKLEILNLSSNDL 193
L + LE L L NDL
Sbjct: 462 LMYVKTLETLILDFNDL 478
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
++ LD+S N LSGYIP +G + L ILNL ND+
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 110 LKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYL 169
LK I N + SG + +++ L+ L++ S++ + IP +G L HLD+S N L
Sbjct: 180 LKHLAISGNKI-SGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 170 SGYIPPTLGRLSKLEILNLSSNDL 193
SG + ++L++LN+SSN
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQF 259
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLE 139
G + L + ++G+ R +C LK I SN + G IP + LQ L
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTC-TELKLLNISSNQFV-GPIPP--LPLKSLQYLS 275
Query: 140 LPSSSLTGIIPLEM-GRLRNLVHLDLSDNYLSGYIPPTLG 178
L + TG IP + G L LDLS N+ G +PP G
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 93 DNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE 152
+ TGE+ F L + N+ G++P + S+L++L L S++ +G +P++
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFY-GAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 153 -MGRLRNLVHLDLSDNYLSGYIPPTLGRLS-KLEILNLSSNDL 193
+ ++R L LDLS N SG +P +L LS L L+LSSN+
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 121 LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR 157
L G IP ++A++ML ++L +++L+G IP EMG+
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFE 727
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 159 LVHLDLSDNYLSGYIPP--TLGRLSKLEILNLSSNDL 193
L LDLS N LSG + +LG S L+ LN+SSN L
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 121 LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRL 180
L G IP IA ++ L L + ++++G IP + +++ LV LD S N LSG +PP++ L
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 181 SKL 183
L
Sbjct: 149 PNL 151
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 116 HSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP 175
H+N +SG+IP ++ + L TL+ ++L+G +P + L NLV + N +SG IP
Sbjct: 110 HTN--VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 176 TLGRLSKL 183
+ G SKL
Sbjct: 168 SYGSFSKL 175
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG 147
L+ + N++G + F S L + N L SG++P I+++ L + + ++G
Sbjct: 106 LYITHTNVSGAIPDF-LSQIKTLVTLDFSYNAL-SGTLPPSISSLPNLVGITFDGNRISG 163
Query: 148 IIPLEMGRLRNL-VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
IP G L + +S N L+G IPPT L+ L ++LS N
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 107 FPNLK-SFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRL---RNLVHL 162
F NL +F S +L G + Q + L +SL ++G++ +NL L
Sbjct: 194 FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----FDLGKVGLSKNLNGL 249
Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
DL +N + G +P L +L L LN+S N+L
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 68 HCKWTGVSCNSAG-SVIGVSLLWYE-----NDNITGELGRFK----FSCFPNLKSFKIHS 117
HC+ T V C G I + + NDN ELGR F P+L ++
Sbjct: 7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDN---ELGRISSDGLFGRLPHLVKLELKR 63
Query: 118 NYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTL 177
N L +G P+ S +Q L+L + + I L L L+L DN +S +P +
Sbjct: 64 NQL-TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122
Query: 178 GRLSKLEILNLSSN 191
L+ L LNL+SN
Sbjct: 123 EHLNSLTSLNLASN 136
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 153 MGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
GRL +LV L+L N L+G P S ++ L L N +
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.003, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 131 AVSMLQTLELPSSSLT-GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLS 189
+S L+ L++ +S +P LRNL LDLS L P LS L++LN+S
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 190 SNDLY 194
N+ +
Sbjct: 503 HNNFF 507
Score = 27.7 bits (60), Expect = 4.5, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMG-RLRNLVHLDLSDNYLSGYIPPTLGRLSK 182
++ S + L+ L+ S+L + + LRNL++LD+S + LS
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 183 LEILNLSSNDL 193
LE+L ++ N
Sbjct: 447 LEVLKMAGNSF 457
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 131 AVSMLQTLELPSSSLT-GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLS 189
+S L+ L++ +S +P LRNL LDLS L P LS L++LN+S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 190 SNDLY 194
N+ +
Sbjct: 208 HNNFF 212
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 131 AVSMLQTLELPSSSLT-GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLS 189
+S L+ L++ +S +P LRNL LDLS L P LS L++LN+S
Sbjct: 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
Query: 190 SNDLY 194
N+ +
Sbjct: 527 HNNFF 531
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 131 AVSMLQTLELPSSSLT-GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLS 189
+S L+ L++ +S +P LRNL LDLS L P LS L++LN++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 190 SNDL 193
SN L
Sbjct: 503 SNQL 506
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%)
Query: 128 EIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILN 187
++ A + LQ L L SS + I L +L HLDLSDN+LS G LS L+ LN
Sbjct: 71 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 130
Query: 188 LSSN 191
L N
Sbjct: 131 LMGN 134
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%)
Query: 128 EIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILN 187
++ A + LQ L L SS + I L +L HLDLSDN+LS G LS L+ LN
Sbjct: 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104
Query: 188 LSSN 191
L N
Sbjct: 105 LMGN 108
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 115 IHSNYLLSGSI-PSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYI 173
+ S +LL S+ E A V +L L LT + LE L + HLDLS N L +
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLH---LAHKDLTVLCHLEQLLL--VTHLDLSHNRLRA-L 478
Query: 174 PPTLGRLSKLEILNLSSNDL 193
PP L L LE+L S N L
Sbjct: 479 PPALAALRCLEVLQASDNAL 498
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 115 IHSNYLLSGSI-PSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYI 173
+ S +LL S+ E A V +L L LT + LE L + HLDLS N L +
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLH---LAHKDLTVLCHLEQLLL--VTHLDLSHNRLRA-L 478
Query: 174 PPTLGRLSKLEILNLSSNDL 193
PP L L LE+L S N L
Sbjct: 479 PPALAALRCLEVLQASDNAL 498
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 109 NLKSFKIHSNYLLSGSIPSE--IAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
+L+ + N GSI + V L+ L L S +L I LRN+ HLDLS
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSH 508
Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193
N L+G L L L LN++SN++
Sbjct: 509 NSLTGDSMDALSHLKGL-YLNMASNNI 534
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 104 FSCFPNLKSFKIHSN--YLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL-- 159
F PNL+ + S+ Y L P + L L L L+ + L+ G RNL
Sbjct: 69 FRNLPNLRILDLGSSKIYFLH---PDAFQGLFHLFELRLYFCGLSDAV-LKDGYFRNLKA 124
Query: 160 -VHLDLSDNYL-SGYIPPTLGRLSKLEILNLSSNDLY 194
LDLS N + S Y+ P+ G+L+ L+ ++ SSN ++
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 94 NITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM 153
N L + +F+ FP+L+ +++ N ++S P + L+TL L S+ L +IPL +
Sbjct: 42 NRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGV 99
Query: 154 GR-LRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
L NL LD+S+N + + L L+ L + NDL
Sbjct: 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194
N+ LDLS N LS L +KLE+LNLSSN LY
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194
N+ LDLS N LS L +KLE+LNLSSN LY
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 127 SEIAAVSMLQTLELPSSSLTG--IIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLE 184
S A V LQ L L +L I P LRNL LDLS+N ++ L L LE
Sbjct: 448 SSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLE 507
Query: 185 ILNLSSNDL 193
IL+ N+L
Sbjct: 508 ILDFQHNNL 516
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLEL 140
++ + L +E+DN+ + R LK F+ + L IP+ + + L LEL
Sbjct: 97 IVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTH--IPANLLTDMRNLSHLEL 154
Query: 141 PSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
+++ + L NL ++ N L G++ KL+ LNL+SN L
Sbjct: 155 -RANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQL 206
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 30/65 (46%)
Query: 127 SEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEIL 186
S++ LQ L L S+ + I L +L HLDLS NYLS LS L L
Sbjct: 70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129
Query: 187 NLSSN 191
NL N
Sbjct: 130 NLLGN 134
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 0.97, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNY 168
NL+ F I +N I L L L +SLT + P E+ L NL LDLS N
Sbjct: 233 NLQIFNISAN----------IFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNR 281
Query: 169 LSGYIPPTLGRLSKLEILNLSSN 191
L+ +P LG +L+ N
Sbjct: 282 LTS-LPAELGSCFQLKYFYFFDN 303
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 129 IAAVSMLQTLELPSSSLTGII--PLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEIL 186
A V LQ L L +L + P LRNL LDLS+N ++ L L KLEIL
Sbjct: 455 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 514
Query: 187 NLSSNDL 193
+L N+L
Sbjct: 515 DLQHNNL 521
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMG-------------RLRNLVHLDLSDNYLS 170
++ E+A S L+ ++P T I L + R L LD+ N +S
Sbjct: 8 TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 67
Query: 171 GYIPPTLGRLSKLEILNLSSNDL 193
P +L L++LNL N+L
Sbjct: 68 KLEPELCQKLPMLKVLNLQHNEL 90
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 129 IAAVSMLQTLELPSSSLTGII--PLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEIL 186
A V LQ L L +L + P LRNL LDLS+N ++ L L KLEIL
Sbjct: 460 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 519
Query: 187 NLSSNDL 193
+L N+L
Sbjct: 520 DLQHNNL 526
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMG-------------RLRNLVHLDLSDNYLS 170
++ E+A S L+ ++P T I L + R L LD+ N +S
Sbjct: 13 TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 72
Query: 171 GYIPPTLGRLSKLEILNLSSNDL 193
P +L L++LNL N+L
Sbjct: 73 KLEPELCQKLPMLKVLNLQHNEL 95
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 129 IAAVSMLQTLELPSSSLTGII--PLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEIL 186
A V LQ L L +L + P LRNL LDLS+N ++ L L KLEIL
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509
Query: 187 NLSSNDL 193
+L N+L
Sbjct: 510 DLQHNNL 516
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMG-------------RLRNLVHLDLSDNYLS 170
++ E+A S L+ ++P T I L + R L LD+ N +S
Sbjct: 3 TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 171 GYIPPTLGRLSKLEILNLSSNDL 193
P +L L++LNL N+L
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNEL 85
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 25/127 (19%)
Query: 88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQ---TLELPSSS 144
+ Y N+ I EL + + LK+ + LSG+ ++A++ LQ TL+L S+
Sbjct: 65 IQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 124
Query: 145 LTGIIPLE--------------------MGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLE 184
+T + PL + L NL +L + +N ++ P L LSKL
Sbjct: 125 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLT 182
Query: 185 ILNLSSN 191
L N
Sbjct: 183 TLRADDN 189
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 30/65 (46%)
Query: 127 SEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEIL 186
S++ LQ L L S+ + I L +L HLDLS NYLS LS L L
Sbjct: 44 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 103
Query: 187 NLSSN 191
NL N
Sbjct: 104 NLLGN 108
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKL 183
+P ++ + L L+L ++ +T I + L+NL L L +N +S P L KL
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 184 EILNLSSNDL 193
E L LS N L
Sbjct: 103 ERLYLSKNQL 112
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 34/146 (23%)
Query: 69 CKWTGVSCNS-------AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLL 121
C T V C S AG +L+ ++ IT +L F NLK + SN L
Sbjct: 19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL- 76
Query: 122 SGSIPSEI-AAVSMLQTLELPSSSLTGI-----------------------IPLEMGRLR 157
G++P + +++ L L+L ++ LT + +P + RL
Sbjct: 77 -GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLT 135
Query: 158 NLVHLDLSDNYLSGYIPPTLGRLSKL 183
+L HL L N L RLS L
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSL 161
>pdb|3BFM|A Chain A, Crystal Structure Of A Biotin Protein Ligase-Like Protein
Of Unknown Function (Tm1040_0394) From Silicibacter Sp.
Tm1040 At 1.70 A Resolution
Length = 235
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
Query: 24 SDTTIFAIASAAGLLSSPKLLE---REALLATGWWVNNWATGNYTSYHCKWTGVS 75
+T ++A A +++P+LLE R L W+N W G + H +W G++
Sbjct: 142 DETALYAEGCAD--VAAPRLLESWARHCLH----WINRWDEGELETIHGEWRGLA 190
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKL 183
+P ++ + L L+L ++ +T I + L+NL L L +N +S P L KL
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 184 EILNLSSNDL 193
E L LS N L
Sbjct: 103 ERLYLSKNQL 112
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 154 GRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
++ +HLD S+N L+ + G L++LE L L N L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 125 IPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLE 184
+ S + + L+ L L + + I L +L+ L+LS N+L L KLE
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 185 ILNLSSN 191
+L+LS N
Sbjct: 351 VLDLSYN 357
>pdb|3P1U|A Chain A, Crystal Structure Of A Susd Homolog (Bdi_0600) From
Parabacteroides Distasonis Atcc 8503 At 2.05 A
Resolution
pdb|3P1U|B Chain B, Crystal Structure Of A Susd Homolog (Bdi_0600) From
Parabacteroides Distasonis Atcc 8503 At 2.05 A
Resolution
Length = 529
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 10 RLVVIIILINVGAISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHC 69
RL V + ++ AI+S AGL+S A G W ++ NYT +
Sbjct: 192 RLAVRLTEVDQEKCIAEANAAISSPAGLISDKADNAYXPPKADGSWGQDY---NYTXFQI 248
Query: 70 KWTGVSCNS 78
W+G C S
Sbjct: 249 TWSGPICXS 257
>pdb|2OD5|A Chain A, Crystal Structure Of A Putative Nucleic Acid Binding
Protein (Jcvi_pep_1096688149193) From Uncultured Marine
Organism At 1.79 A Resolution
Length = 116
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 44 LEREALLATGWWVNNWATGNYTSYHC-KWT 72
++R +L+ G+ + WAT N+ + HC +WT
Sbjct: 67 IKRSGILSGGYDICEWATRNWVAEHCPEWT 96
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 27/154 (17%)
Query: 65 TSYHCKWTGVSCNSA--GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLS 122
T G++ SA V + + Y N+ I EL + + LK+ + LS
Sbjct: 34 TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELS 93
Query: 123 GSIPSEIAAVSMLQ---TLELPSSSLTGIIPL--------------------EMGRLRNL 159
G+ ++A++ LQ TL+L S+ +T + PL + L NL
Sbjct: 94 GNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNL 153
Query: 160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
+L + + +S P L LSKL L N +
Sbjct: 154 QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 135 LQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLS 170
LQ L S+ LT I +L L LDL+DN+L
Sbjct: 59 LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
F CF L+ + + +L +PS + +S L+ L L ++ + + +L HL
Sbjct: 274 FHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 164 LSDNYLSGYI-PPTLGRLSKLEILNLSSNDL 193
+ N + L L L L+LS +D+
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,376,686
Number of Sequences: 62578
Number of extensions: 213742
Number of successful extensions: 562
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 121
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)