Query 046655
Match_columns 194
No_of_seqs 221 out of 2781
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.7E-21 7.9E-26 174.7 13.5 151 36-192 28-199 (968)
2 PLN03150 hypothetical protein; 99.8 1.2E-18 2.6E-23 151.3 11.7 151 33-192 368-526 (623)
3 PLN00113 leucine-rich repeat r 99.6 4.5E-15 9.8E-20 135.1 6.9 110 81-192 138-247 (968)
4 KOG0617 Ras suppressor protein 99.4 4.5E-14 9.7E-19 102.1 -1.3 110 79-193 52-162 (264)
5 PLN03150 hypothetical protein; 99.3 2.3E-12 4.9E-17 112.3 6.8 85 109-194 419-503 (623)
6 KOG0617 Ras suppressor protein 99.2 1.5E-13 3.2E-18 99.4 -4.1 105 84-193 34-139 (264)
7 KOG0472 Leucine-rich repeat pr 99.2 7.9E-12 1.7E-16 100.9 1.0 102 88-194 417-541 (565)
8 KOG4194 Membrane glycoprotein 99.2 3.5E-12 7.6E-17 107.0 -1.2 88 104-192 313-403 (873)
9 PF14580 LRR_9: Leucine-rich r 99.1 4.7E-11 1E-15 87.8 4.8 105 82-194 18-126 (175)
10 PF13855 LRR_8: Leucine rich r 99.1 3.8E-11 8.3E-16 73.2 3.1 61 133-193 1-61 (61)
11 KOG4194 Membrane glycoprotein 99.1 1.6E-11 3.4E-16 103.2 -0.2 104 88-193 274-377 (873)
12 PF13855 LRR_8: Leucine rich r 99.0 2.6E-10 5.7E-15 69.4 3.5 61 108-169 1-61 (61)
13 KOG0444 Cytoskeletal regulator 99.0 4.1E-11 9E-16 101.7 -0.6 108 83-194 126-258 (1255)
14 KOG0618 Serine/threonine phosp 99.0 4.7E-11 1E-15 104.5 -0.5 107 80-192 380-487 (1081)
15 KOG4237 Extracellular matrix p 99.0 3.5E-11 7.6E-16 96.8 -1.8 103 88-193 72-176 (498)
16 KOG0472 Leucine-rich repeat pr 99.0 4.1E-11 8.9E-16 96.8 -2.0 112 74-193 197-309 (565)
17 KOG0618 Serine/threonine phosp 98.9 1E-10 2.2E-15 102.5 -2.0 110 80-194 356-465 (1081)
18 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.6E-14 80.4 2.8 102 81-188 40-147 (175)
19 KOG0444 Cytoskeletal regulator 98.8 6.7E-10 1.5E-14 94.5 -0.6 100 88-192 273-373 (1255)
20 PRK15387 E3 ubiquitin-protein 98.8 1.7E-08 3.6E-13 89.5 6.6 76 109-194 383-458 (788)
21 KOG0532 Leucine-rich repeat (L 98.7 1E-09 2.3E-14 92.0 -1.2 108 79-193 117-246 (722)
22 PRK15370 E3 ubiquitin-protein 98.7 3.7E-08 8E-13 87.4 7.6 97 84-194 200-296 (754)
23 KOG1259 Nischarin, modulator o 98.7 1.7E-09 3.7E-14 84.8 -1.1 105 82-194 306-412 (490)
24 KOG0532 Leucine-rich repeat (L 98.7 2.7E-09 5.8E-14 89.7 -0.6 92 80-178 163-254 (722)
25 KOG1259 Nischarin, modulator o 98.7 4.1E-09 8.9E-14 82.7 0.3 98 88-193 289-386 (490)
26 cd00116 LRR_RI Leucine-rich re 98.6 1.1E-08 2.4E-13 81.9 1.8 85 108-193 137-233 (319)
27 KOG4237 Extracellular matrix p 98.6 1.3E-08 2.8E-13 82.3 1.4 98 95-193 261-358 (498)
28 cd00116 LRR_RI Leucine-rich re 98.6 1.1E-08 2.4E-13 81.9 0.9 113 80-194 78-206 (319)
29 PLN03210 Resistant to P. syrin 98.6 2.3E-07 5.1E-12 86.4 8.9 103 84-191 612-714 (1153)
30 PRK15370 E3 ubiquitin-protein 98.6 6.6E-08 1.4E-12 85.8 4.7 99 84-194 326-428 (754)
31 PLN03210 Resistant to P. syrin 98.5 2.8E-07 6.1E-12 85.9 7.9 103 84-191 779-903 (1153)
32 COG4886 Leucine-rich repeat (L 98.4 1E-07 2.2E-12 78.9 2.5 105 82-192 115-220 (394)
33 PF12799 LRR_4: Leucine Rich r 98.4 2.3E-07 5E-12 52.5 3.0 37 133-170 1-37 (44)
34 KOG4658 Apoptotic ATPase [Sign 98.4 1.3E-07 2.8E-12 85.3 3.0 104 84-190 546-651 (889)
35 PRK15387 E3 ubiquitin-protein 98.4 7.3E-07 1.6E-11 79.3 7.5 98 85-194 224-355 (788)
36 KOG4579 Leucine-rich repeat (L 98.4 1.9E-08 4.2E-13 70.4 -2.4 81 85-170 55-136 (177)
37 PF12799 LRR_4: Leucine Rich r 98.4 3.9E-07 8.5E-12 51.5 2.8 36 109-146 2-37 (44)
38 PF08263 LRRNT_2: Leucine rich 98.3 2.7E-07 5.8E-12 52.0 2.0 39 37-77 3-43 (43)
39 COG4886 Leucine-rich repeat (L 98.3 4.2E-07 9.1E-12 75.3 2.1 79 84-167 141-219 (394)
40 KOG4579 Leucine-rich repeat (L 98.2 2E-07 4.2E-12 65.4 -1.6 104 85-193 29-135 (177)
41 KOG1859 Leucine-rich repeat pr 98.0 1.3E-07 2.9E-12 81.8 -6.0 104 82-193 186-291 (1096)
42 KOG0531 Protein phosphatase 1, 98.0 1.9E-06 4.2E-11 72.0 0.9 107 79-193 91-198 (414)
43 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.4E-10 60.1 4.6 99 86-190 45-149 (233)
44 KOG1859 Leucine-rich repeat pr 98.0 1.6E-07 3.5E-12 81.3 -5.7 97 88-193 169-266 (1096)
45 KOG0531 Protein phosphatase 1, 98.0 2.1E-06 4.5E-11 71.8 0.7 105 82-194 71-175 (414)
46 KOG4658 Apoptotic ATPase [Sign 97.9 8.7E-06 1.9E-10 73.7 2.9 101 88-192 528-629 (889)
47 KOG1644 U2-associated snRNP A' 97.8 4.9E-05 1.1E-09 56.7 5.2 84 107-194 41-126 (233)
48 KOG3207 Beta-tubulin folding c 97.6 1.4E-05 3.1E-10 65.7 -0.2 61 132-193 245-313 (505)
49 KOG3207 Beta-tubulin folding c 97.5 2.3E-05 5.1E-10 64.5 0.0 112 81-194 220-339 (505)
50 KOG2739 Leucine-rich acidic nu 97.5 8.9E-05 1.9E-09 57.2 2.7 83 103-188 60-150 (260)
51 KOG3665 ZYG-1-like serine/thre 97.1 0.00023 4.9E-09 63.2 1.3 83 107-193 172-262 (699)
52 KOG2739 Leucine-rich acidic nu 96.9 0.00044 9.5E-09 53.5 1.7 86 103-193 38-128 (260)
53 KOG0473 Leucine-rich repeat pr 96.9 2.4E-05 5.3E-10 59.7 -5.3 92 98-193 32-123 (326)
54 KOG2123 Uncharacterized conser 96.7 0.00011 2.4E-09 57.6 -2.8 80 105-187 38-123 (388)
55 PRK15386 type III secretion pr 96.7 0.0038 8.2E-08 52.0 5.9 59 84-151 53-112 (426)
56 PF00560 LRR_1: Leucine Rich R 96.6 0.00076 1.6E-08 31.9 0.7 19 159-178 2-20 (22)
57 KOG3665 ZYG-1-like serine/thre 96.6 0.0018 3.9E-08 57.6 3.2 108 82-192 121-231 (699)
58 PF00560 LRR_1: Leucine Rich R 96.5 0.0011 2.4E-08 31.4 0.7 21 134-155 1-21 (22)
59 KOG2982 Uncharacterized conser 96.4 0.00058 1.3E-08 54.1 -1.0 61 131-191 95-156 (418)
60 KOG1909 Ran GTPase-activating 96.2 0.0013 2.8E-08 53.0 0.2 63 131-193 183-253 (382)
61 KOG1909 Ran GTPase-activating 96.1 0.001 2.2E-08 53.6 -1.0 89 104-193 209-310 (382)
62 KOG2982 Uncharacterized conser 95.8 0.003 6.4E-08 50.3 0.6 81 85-167 73-156 (418)
63 PF13306 LRR_5: Leucine rich r 95.2 0.056 1.2E-06 37.0 5.4 99 85-190 14-112 (129)
64 KOG2120 SCF ubiquitin ligase, 95.1 0.0014 3.1E-08 52.0 -3.3 56 89-145 216-272 (419)
65 KOG2123 Uncharacterized conser 95.1 0.0014 3E-08 51.6 -3.4 81 107-193 18-100 (388)
66 PF13306 LRR_5: Leucine rich r 94.9 0.086 1.9E-06 36.1 5.6 99 78-183 30-128 (129)
67 PRK15386 type III secretion pr 94.9 0.077 1.7E-06 44.4 5.9 32 157-191 156-187 (426)
68 PF13504 LRR_7: Leucine rich r 94.6 0.017 3.8E-07 25.4 0.9 12 159-170 3-14 (17)
69 COG5238 RNA1 Ran GTPase-activa 93.9 0.031 6.8E-07 44.1 1.6 104 86-193 33-169 (388)
70 COG5238 RNA1 Ran GTPase-activa 93.4 0.14 3.1E-06 40.5 4.4 104 84-194 93-227 (388)
71 KOG0473 Leucine-rich repeat pr 93.4 0.0016 3.6E-08 49.9 -6.0 80 86-170 45-124 (326)
72 smart00369 LRR_TYP Leucine-ric 93.0 0.11 2.4E-06 25.2 2.3 13 134-146 3-15 (26)
73 smart00370 LRR Leucine-rich re 93.0 0.11 2.4E-06 25.2 2.3 13 134-146 3-15 (26)
74 PF13516 LRR_6: Leucine Rich r 90.4 0.08 1.7E-06 25.2 -0.0 15 133-147 2-16 (24)
75 smart00365 LRR_SD22 Leucine-ri 88.9 0.37 8.1E-06 23.7 1.7 13 181-193 2-14 (26)
76 KOG2120 SCF ubiquitin ligase, 87.9 0.015 3.2E-07 46.4 -5.6 82 109-191 186-270 (419)
77 smart00364 LRR_BAC Leucine-ric 85.5 0.52 1.1E-05 23.1 1.1 18 157-175 2-19 (26)
78 smart00368 LRR_RI Leucine rich 84.7 0.81 1.8E-05 22.7 1.7 13 181-193 2-14 (28)
79 KOG3864 Uncharacterized conser 77.9 0.16 3.5E-06 38.3 -3.4 78 88-166 106-185 (221)
80 KOG3864 Uncharacterized conser 70.4 0.94 2E-05 34.3 -0.9 35 107-141 150-184 (221)
81 KOG1947 Leucine rich repeat pr 68.1 3.4 7.5E-05 34.6 1.9 89 104-192 210-306 (482)
82 KOG3763 mRNA export factor TAP 60.0 5.1 0.00011 34.8 1.4 61 107-170 217-283 (585)
83 KOG4308 LRR-containing protein 50.4 0.6 1.3E-05 40.0 -5.6 59 135-193 235-302 (478)
84 smart00367 LRR_CC Leucine-rich 48.6 15 0.00033 17.4 1.5 10 109-118 3-12 (26)
85 TIGR00864 PCC polycystin catio 44.5 16 0.00035 37.9 2.2 32 89-122 1-32 (2740)
86 KOG3763 mRNA export factor TAP 44.1 11 0.00024 32.9 1.0 35 133-167 218-254 (585)
87 TIGR00864 PCC polycystin catio 25.2 43 0.00093 35.1 1.7 32 114-146 1-32 (2740)
88 PF15240 Pro-rich: Proline-ric 21.9 56 0.0012 24.2 1.4 7 12-18 2-8 (179)
89 KOG4341 F-box protein containi 20.5 49 0.0011 28.2 0.9 106 83-189 320-434 (483)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=3.7e-21 Score=174.70 Aligned_cols=151 Identities=30% Similarity=0.544 Sum_probs=87.2
Q ss_pred CCCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCcccccceeCCCCCeeeee---------------------eeeccCCc
Q 046655 36 GLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVS---------------------LLWYENDN 94 (194)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~gv~c~~~~~~~~l~---------------------~l~l~~n~ 94 (194)
+.|..+|+.||+.+.++...+.+| ....++|.|.||.|+..++++.|. .+++++|+
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w---~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNW---NSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCC---CCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 357889999999997665567899 456789999999998655554443 35566666
Q ss_pred cccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCc
Q 046655 95 ITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIP 174 (194)
Q Consensus 95 l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p 174 (194)
+.|.+|...+..+++|++|++++| .+++.+|. +.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 181 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCC-ccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC
Confidence 666666322334555555555555 44433332 223444444444444444444445555555555555555554555
Q ss_pred cccCCCCCCCeEeccCCc
Q 046655 175 PTLGRLSKLEILNLSSND 192 (194)
Q Consensus 175 ~~~~~l~~L~~L~ls~N~ 192 (194)
..++++++|++|++++|.
T Consensus 182 ~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred hhhhhCcCCCeeeccCCC
Confidence 555555555555555444
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.78 E-value=1.2e-18 Score=151.30 Aligned_cols=151 Identities=25% Similarity=0.399 Sum_probs=127.1
Q ss_pred ccCCCCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCc-----ccccceeCCCC--CeeeeeeeeccCCccccccCccccC
Q 046655 33 SAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHC-----KWTGVSCNSAG--SVIGVSLLWYENDNITGELGRFKFS 105 (194)
Q Consensus 33 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c-----~~~gv~c~~~~--~~~~l~~l~l~~n~l~~~lp~~~~~ 105 (194)
.+...|..+|..+|..+..+. ..+|. .++| .|.||.|.... ....+..++|++|.+.|.+| ..+.
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~--~~~W~-----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip-~~i~ 439 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPL--RFGWN-----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP-NDIS 439 (623)
T ss_pred ccCchHHHHHHHHHHhcCCcc--cCCCC-----CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCC-HHHh
Confidence 345567888999999885443 24792 3455 79999996322 22346678899999999999 7899
Q ss_pred CCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCC-CCCC
Q 046655 106 CFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRL-SKLE 184 (194)
Q Consensus 106 ~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l-~~L~ 184 (194)
.+++|+.|++++| .+.|.+|..++.+++|+.|+|++|+++|.+|+.++.+++|+.|++++|+++|.+|..++.. .++.
T Consensus 440 ~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 440 KLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred CCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999999988763 4677
Q ss_pred eEeccCCc
Q 046655 185 ILNLSSND 192 (194)
Q Consensus 185 ~L~ls~N~ 192 (194)
.+++.+|.
T Consensus 519 ~l~~~~N~ 526 (623)
T PLN03150 519 SFNFTDNA 526 (623)
T ss_pred eEEecCCc
Confidence 88888875
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.56 E-value=4.5e-15 Score=135.12 Aligned_cols=110 Identities=34% Similarity=0.549 Sum_probs=53.5
Q ss_pred CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655 81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV 160 (194)
Q Consensus 81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 160 (194)
.+..|+.+++++|.+.+.+| ..+..+++|++|++++| .+.+.+|..+.++++|++|++++|.+.+.+|..++.+++|+
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred ccCCCCEEECcCCcccccCC-hHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 34444455555555554444 34445555555555555 44444444444555555555555554444444444444444
Q ss_pred eeecccCccCCCCccccCCCCCCCeEeccCCc
Q 046655 161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSND 192 (194)
Q Consensus 161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ 192 (194)
.|++++|++++.+|..++++++|++|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 44444444444444444444444444444443
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=4.5e-14 Score=102.09 Aligned_cols=110 Identities=29% Similarity=0.492 Sum_probs=94.3
Q ss_pred CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc-ccCchhhccCc
Q 046655 79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT-GIIPLEMGRLR 157 (194)
Q Consensus 79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~ 157 (194)
...+.+++.+++.+|++. ++| ..++.++.|+.|+++.| .+. ..|..|+.++.|+.|||.+|++. ..+|..|..+.
T Consensus 52 ia~l~nlevln~~nnqie-~lp-~~issl~klr~lnvgmn-rl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIE-ELP-TSISSLPKLRILNVGMN-RLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred HHHhhhhhhhhcccchhh-hcC-hhhhhchhhhheecchh-hhh-cCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence 456778888999999999 999 78999999999999999 776 68999999999999999999885 35788888888
Q ss_pred ccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 158 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
.|+.|.++.|.|. .+|..++++++|+.|.+..|.+
T Consensus 128 tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 128 TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 8888888888888 7888888888888888888754
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=2.3e-12 Score=112.34 Aligned_cols=85 Identities=38% Similarity=0.620 Sum_probs=81.5
Q ss_pred CccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEec
Q 046655 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNL 188 (194)
Q Consensus 109 ~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~l 188 (194)
.++.|+|++| .+.|.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|+.++++++|++|++
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4788999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCC
Q 046655 189 SSNDLY 194 (194)
Q Consensus 189 s~N~ls 194 (194)
++|+++
T Consensus 498 s~N~l~ 503 (623)
T PLN03150 498 NGNSLS 503 (623)
T ss_pred cCCccc
Confidence 999874
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=1.5e-13 Score=99.45 Aligned_cols=105 Identities=24% Similarity=0.411 Sum_probs=92.8
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 163 (194)
.+..+-+++|.++ .+| +.+..+.+|+.|++.+| .++ .+|..++.++.|+.|+++.|++. .+|..|+.++.|+.||
T Consensus 34 ~ITrLtLSHNKl~-~vp-pnia~l~nlevln~~nn-qie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVP-PNIAELKNLEVLNLSNN-QIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhcccCcee-ecC-CcHHHhhhhhhhhcccc-hhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 3444667999999 888 78999999999999999 777 58999999999999999999998 8899999999999999
Q ss_pred cccCccC-CCCccccCCCCCCCeEeccCCcC
Q 046655 164 LSDNYLS-GYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 164 L~~N~l~-g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+..|++. ..+|..|..+..|+.|++++|.|
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence 9999887 47898899999999999999976
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.15 E-value=7.9e-12 Score=100.85 Aligned_cols=102 Identities=32% Similarity=0.536 Sum_probs=75.5
Q ss_pred eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc---------------------
Q 046655 88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT--------------------- 146 (194)
Q Consensus 88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~--------------------- 146 (194)
+.++.|.+. .+| ..+..++.|..|++++| .+. .+|.+++.+..||.|+++.|+|.
T Consensus 417 l~lsnn~is-fv~-~~l~~l~kLt~L~L~NN-~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 417 LVLSNNKIS-FVP-LELSQLQKLTFLDLSNN-LLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HHhhcCccc-cch-HHHHhhhcceeeecccc-hhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc
Confidence 334444444 666 56666777777777776 444 56777777766777777776664
Q ss_pred --ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 147 --GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 147 --~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
...|+.+.++.+|..||+.+|.+. .+|+.++++++|++|++.+|+|.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 223344788999999999999999 89999999999999999999984
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.15 E-value=3.5e-12 Score=107.03 Aligned_cols=88 Identities=27% Similarity=0.319 Sum_probs=36.0
Q ss_pred cCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccc---cCCC
Q 046655 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPT---LGRL 180 (194)
Q Consensus 104 ~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~---~~~l 180 (194)
+...+.|++|+|++| .++...+..|..+..|+.|+|++|++...--..|.++++|+.|||++|.+++.+.+. |..+
T Consensus 313 WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 333334444444444 333333333333444444444444443222223444444444444444444333221 3344
Q ss_pred CCCCeEeccCCc
Q 046655 181 SKLEILNLSSND 192 (194)
Q Consensus 181 ~~L~~L~ls~N~ 192 (194)
++|+.|++.+|+
T Consensus 392 ~~LrkL~l~gNq 403 (873)
T KOG4194|consen 392 PSLRKLRLTGNQ 403 (873)
T ss_pred hhhhheeecCce
Confidence 455555555544
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=4.7e-11 Score=87.84 Aligned_cols=105 Identities=23% Similarity=0.393 Sum_probs=38.4
Q ss_pred eeeeeeeeccCCccccccCccccC-CCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhh-ccCccc
Q 046655 82 VIGVSLLWYENDNITGELGRFKFS-CFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM-GRLRNL 159 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~~~lp~~~~~-~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L 159 (194)
..+++.|+|+||+|+ .+. .++ .+.+|+.|++++| .++. ++ .+..++.|++|++++|+++ .+.+.+ ..+++|
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N-~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNN-QITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S---T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccc-ccc--chhhhhcCCCEEECCCC-CCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 345566888888888 665 344 5778899999999 7773 43 5778888999999999998 454444 467889
Q ss_pred ceeecccCccCCCCc--cccCCCCCCCeEeccCCcCC
Q 046655 160 VHLDLSDNYLSGYIP--PTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 160 ~~L~L~~N~l~g~~p--~~~~~l~~L~~L~ls~N~ls 194 (194)
+.|++++|++.. +- ..+..+++|++|++.+|+++
T Consensus 91 ~~L~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISD-LNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---S-CCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCC-hHHhHHHHcCCCcceeeccCCccc
Confidence 999999998873 22 34667888999999988763
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.13 E-value=3.8e-11 Score=73.17 Aligned_cols=61 Identities=39% Similarity=0.573 Sum_probs=42.8
Q ss_pred CCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 133 SMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 133 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777744445677777777777777777755555677777777777777764
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.08 E-value=1.6e-11 Score=103.17 Aligned_cols=104 Identities=22% Similarity=0.239 Sum_probs=57.3
Q ss_pred eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccC
Q 046655 88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167 (194)
Q Consensus 88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 167 (194)
++|+.|++. .+.++.+.+++.|+.|++++| .+...-++.|...+.|++|+|++|++....++.|..+..|+.|+|++|
T Consensus 274 l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 274 LNLETNRLQ-AVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred eecccchhh-hhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence 444555555 444344455555555555555 555445555555555666666666665444444555556666666666
Q ss_pred ccCCCCccccCCCCCCCeEeccCCcC
Q 046655 168 YLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 168 ~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+++......|..+++|+.|||++|.+
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 65533333455566666666666654
No 12
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.02 E-value=2.6e-10 Score=69.44 Aligned_cols=61 Identities=39% Similarity=0.565 Sum_probs=48.3
Q ss_pred CCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCcc
Q 046655 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYL 169 (194)
Q Consensus 108 ~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 169 (194)
++|++|++++| .++...+..|..+++|++|++++|++....|..|.++++|+++++++|++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46788888888 77765556778888888888888888866666788888888888888865
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.01 E-value=4.1e-11 Score=101.69 Aligned_cols=108 Identities=33% Similarity=0.465 Sum_probs=83.4
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc----------------
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT---------------- 146 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~---------------- 146 (194)
.+.-+++|++|+|. +||.+-+-++..|-.|||++| .+. .+|+.+..+.+|++|.|++|.+.
T Consensus 126 Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N-rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN-RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc-hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 33444777778777 777666677777788888888 666 57777777888888888887542
Q ss_pred ---------ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 147 ---------GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 147 ---------~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
.-+|.++..+.+|..+|++.|.+. ++|+.+-++++|+.|+||+|+|+
T Consensus 203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 126777778888889999999998 88998889999999999999874
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.00 E-value=4.7e-11 Score=104.53 Aligned_cols=107 Identities=28% Similarity=0.405 Sum_probs=85.0
Q ss_pred CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655 80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL 159 (194)
Q Consensus 80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 159 (194)
.....|+++++++|++. .+|...+.+++.|+.|++|+| .++ .+|..+..+..|++|...+|++. ..| ++..++.|
T Consensus 380 ~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGN-kL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGN-KLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL 454 (1081)
T ss_pred ccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccc-hhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence 45567778888888888 888777888888888888888 777 57888888888888888888888 777 78888999
Q ss_pred ceeecccCccCC-CCccccCCCCCCCeEeccCCc
Q 046655 160 VHLDLSDNYLSG-YIPPTLGRLSKLEILNLSSND 192 (194)
Q Consensus 160 ~~L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~ 192 (194)
+.+|++.|+++. .+|...- -++|++||+++|.
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred eEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 999999998883 3333322 2789999999884
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.99 E-value=3.5e-11 Score=96.84 Aligned_cols=103 Identities=22% Similarity=0.326 Sum_probs=90.6
Q ss_pred eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCC-CcccccCc-hhhccCcccceeecc
Q 046655 88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPS-SSLTGIIP-LEMGRLRNLVHLDLS 165 (194)
Q Consensus 88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p-~~~~~l~~L~~L~L~ 165 (194)
+.|..|+|+ .||...|..+++|++|||+.| .++.+-|..|.++.++..|-+.+ |+|+ .+| ..|+++.+|+.|.+.
T Consensus 72 irLdqN~I~-~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 72 IRLDQNQIS-SIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred EEeccCCcc-cCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcC
Confidence 777999999 999899999999999999999 99988999999999998887766 9999 555 459999999999999
Q ss_pred cCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 166 DNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 166 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
-|++.-.....|..++++..|.+.+|.+
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhh
Confidence 9999877777788899998888888765
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.97 E-value=4.1e-11 Score=96.78 Aligned_cols=112 Identities=31% Similarity=0.458 Sum_probs=91.5
Q ss_pred ceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCcccc-CCCCCCEeecCCCcccccCchh
Q 046655 74 VSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIA-AVSMLQTLELPSSSLTGIIPLE 152 (194)
Q Consensus 74 v~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~ 152 (194)
+.....+.+.++..+++..|.+. .+| +|..+..|+.++++.| .++ .+|.+.. .+.++..|||..|++. +.|.+
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N-~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGEN-QIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhccc-HHH-hhHHHHhcccccceeeeccccccc-cCchH
Confidence 33345577777888888888888 887 6788888888888888 666 4666655 7888999999999998 88999
Q ss_pred hccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 153 MGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 153 ~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+..+.+|++||+++|.++ .+|.+++++ .|+.|-+.+|++
T Consensus 271 ~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 888899999999999999 588888888 888888888875
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.91 E-value=1e-10 Score=102.50 Aligned_cols=110 Identities=26% Similarity=0.366 Sum_probs=95.6
Q ss_pred CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655 80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL 159 (194)
Q Consensus 80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 159 (194)
.....|+.+.+.+|.++...= +.+.+.++|+.|+|++| .+.......+.++..|+.|+|++|++. .+|..+..++.|
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~-p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCF-PVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL 432 (1081)
T ss_pred hhhHHHHHHHHhcCcccccch-hhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh
Confidence 445556668889999987665 57889999999999999 777444456778999999999999999 899999999999
Q ss_pred ceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++|...+|++. .+| ++..+++|+.+|+|.|+++
T Consensus 433 ~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 433 HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred HHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 99999999999 789 7899999999999999874
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=1.2e-09 Score=80.38 Aligned_cols=102 Identities=23% Similarity=0.324 Sum_probs=52.0
Q ss_pred CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccc-cCCCCCCEeecCCCccccc-CchhhccCcc
Q 046655 81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGI-IPLEMGRLRN 158 (194)
Q Consensus 81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~ 158 (194)
.+..++.+++++|.|+ .+. .+..++.|++|++++| .++. +.+.+ ..+++|+.|++++|++... .-..+..+++
T Consensus 40 ~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N-~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNN-RISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK 114 (175)
T ss_dssp T-TT--EEE-TTS--S---T--T----TT--EEE--SS----S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred hhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCC-CCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence 4667888999999999 886 5788999999999999 8874 55544 4689999999999999742 1245778999
Q ss_pred cceeecccCccCCCCcc----ccCCCCCCCeEec
Q 046655 159 LVHLDLSDNYLSGYIPP----TLGRLSKLEILNL 188 (194)
Q Consensus 159 L~~L~L~~N~l~g~~p~----~~~~l~~L~~L~l 188 (194)
|+.|++.+|.++. .+. .+..+|+|+.||-
T Consensus 115 L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 115 LRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred cceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence 9999999999983 343 2567899999975
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.80 E-value=6.7e-10 Score=94.52 Aligned_cols=100 Identities=25% Similarity=0.368 Sum_probs=61.7
Q ss_pred eeccCCccccccCccccCCCCCccEEEecCCCCCc-ccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeeccc
Q 046655 88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLS-GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166 (194)
Q Consensus 88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 166 (194)
++++.|+++ .+| ..++.++.|+.|.+.+| .++ ..+|..++++.+|+.+..++|.+. ..|+.+..|..|+.|.|+.
T Consensus 273 LNlSrNQLt-~LP-~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLP-DAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred hccccchhc-cch-HHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence 455555555 555 45555666666655555 332 235666666666666666666665 5666666666677777777
Q ss_pred CccCCCCccccCCCCCCCeEeccCCc
Q 046655 167 NYLSGYIPPTLGRLSKLEILNLSSND 192 (194)
Q Consensus 167 N~l~g~~p~~~~~l~~L~~L~ls~N~ 192 (194)
|++. .+|+.+.-++.|+.||+..|+
T Consensus 349 NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 349 NRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccee-echhhhhhcCCcceeeccCCc
Confidence 7666 567776667777777776663
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.75 E-value=1.7e-08 Score=89.47 Aligned_cols=76 Identities=30% Similarity=0.406 Sum_probs=51.8
Q ss_pred CccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEec
Q 046655 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNL 188 (194)
Q Consensus 109 ~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~l 188 (194)
.|+.|++++| .+++ +|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|++
T Consensus 383 ~L~~LdLs~N-~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGN-RLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred ccceEEecCC-cccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 3445555555 4442 3322 245666666666666 35543 245778888888888 78999999999999999
Q ss_pred cCCcCC
Q 046655 189 SSNDLY 194 (194)
Q Consensus 189 s~N~ls 194 (194)
++|+|+
T Consensus 453 s~N~Ls 458 (788)
T PRK15387 453 EGNPLS 458 (788)
T ss_pred CCCCCC
Confidence 999885
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=1e-09 Score=92.03 Aligned_cols=108 Identities=27% Similarity=0.502 Sum_probs=72.8
Q ss_pred CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc-
Q 046655 79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR- 157 (194)
Q Consensus 79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~- 157 (194)
...+..+.+++|+.|+++ .+| ..++.++ |+.|-+++| +++ .+|+.++.+..|..|+.+.|.+. .+|..++++.
T Consensus 117 i~~L~~lt~l~ls~NqlS-~lp-~~lC~lp-Lkvli~sNN-kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s 190 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLS-HLP-DGLCDLP-LKVLIVSNN-KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS 190 (722)
T ss_pred hhhhhHHHHhhhccchhh-cCC-hhhhcCc-ceeEEEecC-ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH
Confidence 345666666777777777 777 4566655 777777777 555 46666666666666666666665 3444333333
Q ss_pred ---------------------ccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 158 ---------------------NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 158 ---------------------~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
.|..||++.|+++ .+|-.|.+++.|++|-|.+|++
T Consensus 191 lr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-ecchhhhhhhhheeeeeccCCC
Confidence 3566788888888 7788888888888888888876
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.72 E-value=3.7e-08 Score=87.40 Aligned_cols=97 Identities=28% Similarity=0.448 Sum_probs=65.6
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 163 (194)
.+..+++++|+++ .+| ..+. ++|++|++++| .++ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.|+
T Consensus 200 ~L~~L~Ls~N~Lt-sLP-~~l~--~nL~~L~Ls~N-~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNNELK-SLP-ENLQ--GNIKTLYANSN-QLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred CCcEEEecCCCCC-cCC-hhhc--cCCCEEECCCC-ccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 3445677777777 677 3332 46788888887 666 4565443 46777778777777 6676654 4678888
Q ss_pred cccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 164 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+++|+++ .+|..+. ++|+.|++++|+|+
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 8888887 5676553 47788888877663
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=1.7e-09 Score=84.80 Aligned_cols=105 Identities=25% Similarity=0.366 Sum_probs=60.5
Q ss_pred eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655 82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 161 (194)
+..++.++++.|.|. .+. .+..+++|+.||+++| .++. +...-.++.+..+|.|+.|.+... +.++++-+|..
T Consensus 306 ~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N-~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvn 378 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGN-LLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVN 378 (490)
T ss_pred ccceeEEecccccee-eeh--hhhhcccceEeecccc-hhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhhee
Confidence 344445555555555 443 2445555555555555 4442 222223445555555555555421 44666777888
Q ss_pred eecccCccCCCCc--cccCCCCCCCeEeccCCcCC
Q 046655 162 LDLSDNYLSGYIP--PTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 162 L~L~~N~l~g~~p--~~~~~l~~L~~L~ls~N~ls 194 (194)
||+++|++. .+. ..++++|.|+++.|.+|+++
T Consensus 379 LDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 379 LDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ccccccchh-hHHHhcccccccHHHHHhhcCCCcc
Confidence 888888877 222 24778888888888888763
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=2.7e-09 Score=89.66 Aligned_cols=92 Identities=21% Similarity=0.436 Sum_probs=73.5
Q ss_pred CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655 80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL 159 (194)
Q Consensus 80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 159 (194)
+....+..++.+.|++. .+| ..++.+.+|+.|.+..| .+. .+|+++..|+ |..||++.|++. .+|-.|.+|..|
T Consensus 163 g~~~tl~~ld~s~nei~-slp-sql~~l~slr~l~vrRn-~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~L 236 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNEIQ-SLP-SQLGYLTSLRDLNVRRN-HLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHL 236 (722)
T ss_pred ccchhHHHhhhhhhhhh-hch-HHhhhHHHHHHHHHhhh-hhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhh
Confidence 34444555777777777 777 67778888888888888 665 5788887554 999999999999 899999999999
Q ss_pred ceeecccCccCCCCccccC
Q 046655 160 VHLDLSDNYLSGYIPPTLG 178 (194)
Q Consensus 160 ~~L~L~~N~l~g~~p~~~~ 178 (194)
++|.|.+|.++ .-|..+.
T Consensus 237 q~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 237 QVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred eeeeeccCCCC-CChHHHH
Confidence 99999999999 5566553
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=4.1e-09 Score=82.72 Aligned_cols=98 Identities=26% Similarity=0.304 Sum_probs=71.8
Q ss_pred eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccC
Q 046655 88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167 (194)
Q Consensus 88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 167 (194)
+++++|.|+ .+. ++..-.|.++.|++++| .+.. + ..+..+++|+.|||++|.++ .+-.+-.++.+++.|.|++|
T Consensus 289 lDLS~N~I~-~iD-ESvKL~Pkir~L~lS~N-~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 289 LDLSGNLIT-QID-ESVKLAPKLRRLILSQN-RIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred ccccccchh-hhh-hhhhhccceeEEecccc-ceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhh
Confidence 777888877 777 66666778888888888 6552 2 33677788888888888877 55555556777788888888
Q ss_pred ccCCCCccccCCCCCCCeEeccCCcC
Q 046655 168 YLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 168 ~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
.+. .+ +.++++-+|..||+++|+|
T Consensus 363 ~iE-~L-SGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 363 KIE-TL-SGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hHh-hh-hhhHhhhhheeccccccch
Confidence 776 22 3467788889999999876
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.63 E-value=1.1e-08 Score=81.88 Aligned_cols=85 Identities=31% Similarity=0.443 Sum_probs=39.9
Q ss_pred CCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCccccc----CchhhccCcccceeecccCccCCC----Ccc
Q 046655 108 PNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGI----IPLEMGRLRNLVHLDLSDNYLSGY----IPP 175 (194)
Q Consensus 108 ~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~g~----~p~ 175 (194)
++|+.|++++| .+++. ++..+..+++|++|++++|.+.+. ++..+...++|+.|++++|.+++. ++.
T Consensus 137 ~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 137 PALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred CCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence 45555555555 44421 222333444555555555555421 222233334555555555555421 222
Q ss_pred ccCCCCCCCeEeccCCcC
Q 046655 176 TLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 176 ~~~~l~~L~~L~ls~N~l 193 (194)
.+..+++|++|++++|++
T Consensus 216 ~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 216 TLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HhcccCCCCEEecCCCcC
Confidence 344455555555555544
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.61 E-value=1.3e-08 Score=82.26 Aligned_cols=98 Identities=24% Similarity=0.252 Sum_probs=86.7
Q ss_pred cccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCc
Q 046655 95 ITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIP 174 (194)
Q Consensus 95 l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p 174 (194)
.-+..|...|..+++|+++++++| .+++.-+..|.++..++.|.|..|++...--.-|.++..|+.|+|.+|+|+-.-|
T Consensus 261 ~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 261 PDSICPAKCFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred cCCcChHHHHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 333566667899999999999999 9998889999999999999999999985555668999999999999999998888
Q ss_pred cccCCCCCCCeEeccCCcC
Q 046655 175 PTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 175 ~~~~~l~~L~~L~ls~N~l 193 (194)
..|..+.+|..|.+-.|++
T Consensus 340 ~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ccccccceeeeeehccCcc
Confidence 8999999999999988876
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.60 E-value=1.1e-08 Score=81.85 Aligned_cols=113 Identities=20% Similarity=0.276 Sum_probs=84.1
Q ss_pred CCeeeeeeeeccCCccccccCccccCCCCC---ccEEEecCCCCCcc----cCCccccCC-CCCCEeecCCCccccc---
Q 046655 80 GSVIGVSLLWYENDNITGELGRFKFSCFPN---LKSFKIHSNYLLSG----SIPSEIAAV-SMLQTLELPSSSLTGI--- 148 (194)
Q Consensus 80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~---L~~L~l~~n~~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~~--- 148 (194)
.....|+.+++++|.+.+..+ ..+..+.. |++|++++| .+.+ .+...+..+ ++|+.|++++|.+++.
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGC-GVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HhcCceeEEEccCCCCChhHH-HHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 446788888999998875444 44544444 999999999 6662 223345566 8999999999999843
Q ss_pred -CchhhccCcccceeecccCccCC----CCccccCCCCCCCeEeccCCcCC
Q 046655 149 -IPLEMGRLRNLVHLDLSDNYLSG----YIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 149 -~p~~~~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++..+..+++|+.|++++|.+++ .++..+..+++|++|++++|.++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 34456677899999999999984 23445566789999999999763
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.58 E-value=2.3e-07 Score=86.43 Aligned_cols=103 Identities=22% Similarity=0.275 Sum_probs=64.5
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 163 (194)
+|..+++.+|++. .++ ..+..+++|+.++++++ .....+| .+..+++|++|+|++|.....+|..++.+++|+.|+
T Consensus 612 ~L~~L~L~~s~l~-~L~-~~~~~l~~Lk~L~Ls~~-~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLW-DGVHSLTGLRNIDLRGS-KNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred CCcEEECcCcccc-ccc-cccccCCCCCEEECCCC-CCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 3444556666666 555 45566777777777766 3223444 366677777777777655556777777777777777
Q ss_pred cccCccCCCCccccCCCCCCCeEeccCC
Q 046655 164 LSDNYLSGYIPPTLGRLSKLEILNLSSN 191 (194)
Q Consensus 164 L~~N~l~g~~p~~~~~l~~L~~L~ls~N 191 (194)
+++|..-+.+|..+ ++++|+.|++++|
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 77654333566554 5566666666654
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.56 E-value=6.6e-08 Score=85.83 Aligned_cols=99 Identities=21% Similarity=0.363 Sum_probs=65.0
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 163 (194)
+|..+.+++|.++ .+| ..+. ++|+.|++++| .++ .+|..+. +.|+.|++++|++. .+|..+. ..|+.|+
T Consensus 326 sL~~L~Ls~N~Lt-~LP-~~l~--~sL~~L~Ls~N-~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld 394 (754)
T PRK15370 326 GLKTLEAGENALT-SLP-ASLP--PELQVLDVSKN-QIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQ 394 (754)
T ss_pred cceeccccCCccc-cCC-hhhc--CcccEEECCCC-CCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHh
Confidence 3444555666665 455 3332 56777777777 665 3555442 56778888888777 5666654 3677888
Q ss_pred cccCccCCCCcccc----CCCCCCCeEeccCCcCC
Q 046655 164 LSDNYLSGYIPPTL----GRLSKLEILNLSSNDLY 194 (194)
Q Consensus 164 L~~N~l~g~~p~~~----~~l~~L~~L~ls~N~ls 194 (194)
+++|+++ .+|..+ ..++++..+++.+|+|+
T Consensus 395 Ls~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 395 ASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 8888887 455543 34577888999988874
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.52 E-value=2.8e-07 Score=85.89 Aligned_cols=103 Identities=21% Similarity=0.377 Sum_probs=56.2
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecC---------------------C
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELP---------------------S 142 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~---------------------~ 142 (194)
+|+.+++++|...+.+| ..+..+++|+.|++++|..+. .+|..+ .+++|+.|+++ +
T Consensus 779 sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~-~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~ 855 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIENCINLE-TLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR 855 (1153)
T ss_pred cchheeCCCCCCccccC-hhhhCCCCCCEEECCCCCCcC-eeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence 45556666666555677 567777777777777663333 455443 34445555554 4
Q ss_pred CcccccCchhhccCcccceeeccc-CccCCCCccccCCCCCCCeEeccCC
Q 046655 143 SSLTGIIPLEMGRLRNLVHLDLSD-NYLSGYIPPTLGRLSKLEILNLSSN 191 (194)
Q Consensus 143 n~l~~~~p~~~~~l~~L~~L~L~~-N~l~g~~p~~~~~l~~L~~L~ls~N 191 (194)
|.+. .+|..+..+++|+.|++++ |+++ .+|..+..+++|+.++++++
T Consensus 856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence 4444 4455555555555555554 2344 34444555555555555543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=1e-07 Score=78.86 Aligned_cols=105 Identities=34% Similarity=0.507 Sum_probs=80.0
Q ss_pred eeeeeeeeccCCccccccCccccCCCC-CccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655 82 VIGVSLLWYENDNITGELGRFKFSCFP-NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV 160 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~-~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 160 (194)
+..+..+.+.+|+++ .++ .....+. +|+.|++++| .+. .+|..+..+++|+.|++++|++. .+|...+..+.|+
T Consensus 115 ~~~l~~L~l~~n~i~-~i~-~~~~~~~~nL~~L~l~~N-~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIP-PLIGLLKSNLKELDLSDN-KIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred ccceeEEecCCcccc-cCc-cccccchhhccccccccc-chh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence 345666777888888 777 5556663 8888888888 665 45566788888888888888888 6777666778888
Q ss_pred eeecccCccCCCCccccCCCCCCCeEeccCCc
Q 046655 161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSND 192 (194)
Q Consensus 161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ 192 (194)
.+++++|+++ .+|........|+.+++++|+
T Consensus 190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred heeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 8888888888 777766666668888888773
No 33
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.42 E-value=2.3e-07 Score=52.47 Aligned_cols=37 Identities=38% Similarity=0.562 Sum_probs=27.4
Q ss_pred CCCCEeecCCCcccccCchhhccCcccceeecccCccC
Q 046655 133 SMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLS 170 (194)
Q Consensus 133 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 170 (194)
++|++|++++|+++ .+|+.++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 36788888888888 56767788888888888888877
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.42 E-value=1.3e-07 Score=85.33 Aligned_cols=104 Identities=24% Similarity=0.394 Sum_probs=85.4
Q ss_pred eeeeeeccCCc--cccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655 84 GVSLLWYENDN--ITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161 (194)
Q Consensus 84 ~l~~l~l~~n~--l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 161 (194)
.++.+-+.+|. +. .++...|..++.|++||+++| .--+.+|..++.+-+|++|++++..++ .+|..++++..|.+
T Consensus 546 ~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~-~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGN-SSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCC-CccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 45555666665 44 566445788999999999999 444579999999999999999999999 89999999999999
Q ss_pred eecccCccCCCCccccCCCCCCCeEeccC
Q 046655 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSS 190 (194)
Q Consensus 162 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~ 190 (194)
|++..+.-...+|.....+++|++|.+..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eccccccccccccchhhhcccccEEEeec
Confidence 99998876556677777799999998854
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.42 E-value=7.3e-07 Score=79.28 Aligned_cols=98 Identities=32% Similarity=0.408 Sum_probs=54.9
Q ss_pred eeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccC-----------------CCCCCEeecCCCcccc
Q 046655 85 VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAA-----------------VSMLQTLELPSSSLTG 147 (194)
Q Consensus 85 l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~-----------------l~~L~~L~L~~n~l~~ 147 (194)
++.|.+.+|+++ .+| . .+++|++|++++| .++ .+|..... ..+|+.|++++|++.
T Consensus 224 L~~L~L~~N~Lt-~LP-~---lp~~Lk~LdLs~N-~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt- 295 (788)
T PRK15387 224 ITTLVIPDNNLT-SLP-A---LPPELRTLEVSGN-QLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT- 295 (788)
T ss_pred CCEEEccCCcCC-CCC-C---CCCCCcEEEecCC-ccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-
Confidence 444556666666 555 2 2456666666666 555 23432111 123455555555555
Q ss_pred cCchhhccCcccceeecccCccCCCCccc---cC----------CC----CCCCeEeccCCcCC
Q 046655 148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPT---LG----------RL----SKLEILNLSSNDLY 194 (194)
Q Consensus 148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~---~~----------~l----~~L~~L~ls~N~ls 194 (194)
.+|. .+++|+.|++++|++++ +|.. +. .+ .+|++|++++|+|+
T Consensus 296 ~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 296 SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA 355 (788)
T ss_pred cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC
Confidence 3443 23678888888888884 4431 11 11 26778888888764
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.39 E-value=1.9e-08 Score=70.43 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=38.8
Q ss_pred eeeeeccCCccccccCccccCC-CCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655 85 VSLLWYENDNITGELGRFKFSC-FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163 (194)
Q Consensus 85 l~~l~l~~n~l~~~lp~~~~~~-l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 163 (194)
|...++++|.+. .+| +.|.. ++.++.+++++| .++ .+|+++..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus 55 l~~i~ls~N~fk-~fp-~kft~kf~t~t~lNl~~n-eis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFP-KKFTIKFPTATTLNLANN-EIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred EEEEecccchhh-hCC-HHHhhccchhhhhhcchh-hhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 333444555555 444 33332 234555555555 444 34555555555555555555554 3444444455555555
Q ss_pred cccCccC
Q 046655 164 LSDNYLS 170 (194)
Q Consensus 164 L~~N~l~ 170 (194)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 5554444
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=3.9e-07 Score=51.53 Aligned_cols=36 Identities=25% Similarity=0.595 Sum_probs=20.5
Q ss_pred CccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 109 ~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
+|++|++++| .++ .+|+.+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N-~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNN-QIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSS-S-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCC-CCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666 555 34555666666666666666665
No 38
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.35 E-value=2.7e-07 Score=51.97 Aligned_cols=39 Identities=23% Similarity=0.484 Sum_probs=27.4
Q ss_pred CCchhHHHHHHHhhcC-CCCCCCCCCCCC-CCCCcccccceeC
Q 046655 37 LLSSPKLLEREALLAT-GWWVNNWATGNY-TSYHCKWTGVSCN 77 (194)
Q Consensus 37 ~~~~~l~~~~~~~~~~-~~~~~~w~~~~~-~~~~c~~~gv~c~ 77 (194)
.|.++|++||..+..+ ...+.+|. .. ..++|+|.||+|+
T Consensus 3 ~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 3 QDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred HHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence 4678999999999864 47889993 22 3799999999995
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.26 E-value=4.2e-07 Score=75.26 Aligned_cols=79 Identities=30% Similarity=0.450 Sum_probs=46.3
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 163 (194)
+|..+++++|++. .+| ..+..++.|+.|+++.| .+. .+|.....+++|+.|++++|++. .+|........|+.+.
T Consensus 141 nL~~L~l~~N~i~-~l~-~~~~~l~~L~~L~l~~N-~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 141 NLKELDLSDNKIE-SLP-SPLRNLPNLKNLDLSFN-DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELD 215 (394)
T ss_pred hcccccccccchh-hhh-hhhhccccccccccCCc-hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhh
Confidence 5666666777776 665 45666677777777777 555 34544445566666666666666 4554443344455555
Q ss_pred cccC
Q 046655 164 LSDN 167 (194)
Q Consensus 164 L~~N 167 (194)
+++|
T Consensus 216 ~~~N 219 (394)
T COG4886 216 LSNN 219 (394)
T ss_pred hcCC
Confidence 5444
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=2e-07 Score=65.44 Aligned_cols=104 Identities=20% Similarity=0.285 Sum_probs=80.6
Q ss_pred eeeeeccCCccccccCc--cccCCCCCccEEEecCCCCCcccCCccccC-CCCCCEeecCCCcccccCchhhccCcccce
Q 046655 85 VSLLWYENDNITGELGR--FKFSCFPNLKSFKIHSNYLLSGSIPSEIAA-VSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161 (194)
Q Consensus 85 l~~l~l~~n~l~~~lp~--~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 161 (194)
+..++|+.+++. .+++ ..+....+|+..++++| .+. .+|+.|.. .+..+++++++|.++ .+|.++..++.|+.
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N-~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDN-GFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccc-hhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 334556666665 4541 12344566788899999 777 46766654 458999999999999 88999999999999
Q ss_pred eecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 162 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
++++.|.+. ..|..+..+.++..||..+|.+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 999999999 7888888889999998887753
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.99 E-value=1.3e-07 Score=81.82 Aligned_cols=104 Identities=30% Similarity=0.388 Sum_probs=70.0
Q ss_pred eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCcc-ccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655 82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSE-IAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV 160 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 160 (194)
+..++.|+|++|++. .+. .+..+++|++||+++| .+. .+|.. ...+. |+.|.+++|.++.. ..+.++.+|+
T Consensus 186 l~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN-~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~ 257 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYN-CLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLY 257 (1096)
T ss_pred HHHhhhhccchhhhh-hhH--HHHhcccccccccccc-hhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhh
Confidence 344555788888877 554 5667788888888888 666 34421 22333 88888888888733 4467788888
Q ss_pred eeecccCccCCCCc-cccCCCCCCCeEeccCCcC
Q 046655 161 HLDLSDNYLSGYIP-PTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 161 ~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~l 193 (194)
.||++.|-+.+--. .-++.+..|+.|+|.+|++
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88888888774211 1245667778888888875
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.99 E-value=1.9e-06 Score=71.99 Aligned_cols=107 Identities=23% Similarity=0.342 Sum_probs=57.8
Q ss_pred CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655 79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN 158 (194)
Q Consensus 79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 158 (194)
.+.++++..+++.+|+|. .+. ..+..+++|++|++++| .++.. ..+..++.|+.|++++|.++.. ..+..++.
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~-~~l~~~~~L~~L~ls~N-~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIE-NLLSSLVNLQVLDLSFN-KITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKS 163 (414)
T ss_pred cccccceeeeeccccchh-hcc-cchhhhhcchheecccc-ccccc--cchhhccchhhheeccCcchhc--cCCccchh
Confidence 344555555666666666 444 22455666666666666 55432 2244555566666666666522 33444566
Q ss_pred cceeecccCccCCCCccc-cCCCCCCCeEeccCCcC
Q 046655 159 LVHLDLSDNYLSGYIPPT-LGRLSKLEILNLSSNDL 193 (194)
Q Consensus 159 L~~L~L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~l 193 (194)
|+.+++++|+++. +... ...+.+++.+++.+|.+
T Consensus 164 L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 164 LKLLDLSYNRIVD-IENDELSELISLEELDLGGNSI 198 (414)
T ss_pred hhcccCCcchhhh-hhhhhhhhccchHHHhccCCch
Confidence 6666666666662 2221 34455555555555543
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.98 E-value=1.1e-05 Score=60.09 Aligned_cols=99 Identities=18% Similarity=0.241 Sum_probs=75.1
Q ss_pred eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCc--hhhccCcccceee
Q 046655 86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIP--LEMGRLRNLVHLD 163 (194)
Q Consensus 86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~ 163 (194)
..++|++|++- .++ .|..++.|.+|.+..| .++...|.--..+++|..|.|.+|++. .+- ..+..++.|++|.
T Consensus 45 d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 45 DAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ceecccccchh-hcc--cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 34778888887 665 5778899999999999 888655544445678999999999886 322 3367889999999
Q ss_pred cccCccCCCCcc----ccCCCCCCCeEeccC
Q 046655 164 LSDNYLSGYIPP----TLGRLSKLEILNLSS 190 (194)
Q Consensus 164 L~~N~l~g~~p~----~~~~l~~L~~L~ls~ 190 (194)
+-+|.++ .... .+.++|+|+.||+..
T Consensus 120 ll~Npv~-~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchh-cccCceeEEEEecCcceEeehhh
Confidence 9999887 2232 367889999999764
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.97 E-value=1.6e-07 Score=81.30 Aligned_cols=97 Identities=23% Similarity=0.315 Sum_probs=76.0
Q ss_pred eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchh-hccCcccceeeccc
Q 046655 88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE-MGRLRNLVHLDLSD 166 (194)
Q Consensus 88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~ 166 (194)
.+++.|.+. .+. ..+.-++.+++|+|++| .++.. ..+..++.|+.|||++|++. .+|.- ..++. |+.|.+.+
T Consensus 169 a~fsyN~L~-~mD-~SLqll~ale~LnLshN-k~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 169 ASFSYNRLV-LMD-ESLQLLPALESLNLSHN-KFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hhcchhhHH-hHH-HHHHHHHHhhhhccchh-hhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence 455667776 666 67777899999999999 87743 37888999999999999998 66643 23444 99999999
Q ss_pred CccCCCCccccCCCCCCCeEeccCCcC
Q 046655 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 167 N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
|.++ .+ ..+.++.+|+.||+++|-|
T Consensus 242 N~l~-tL-~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 242 NALT-TL-RGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred cHHH-hh-hhHHhhhhhhccchhHhhh
Confidence 9988 33 3477899999999999965
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.96 E-value=2.1e-06 Score=71.82 Aligned_cols=105 Identities=25% Similarity=0.332 Sum_probs=81.1
Q ss_pred eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655 82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 161 (194)
+..+..+.+..|.+. .+- ..+..+..++.+++..| .+.. +...+..+++|+.|++++|+|+.. ..+..++.|+.
T Consensus 71 l~~l~~l~l~~n~i~-~~~-~~l~~~~~l~~l~l~~n-~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-KIL-NHLSKLKSLEALDLYDN-KIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred hHhHHhhccchhhhh-hhh-cccccccceeeeecccc-chhh-cccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 344444556777776 433 35778899999999999 8774 444377899999999999999955 34667778999
Q ss_pred eecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 162 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
|++++|.++ .+ ..+..+++|+.+++++|.++
T Consensus 145 L~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 145 LNLSGNLIS-DI-SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred heeccCcch-hc-cCCccchhhhcccCCcchhh
Confidence 999999999 33 34667899999999999763
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.86 E-value=8.7e-06 Score=73.71 Aligned_cols=101 Identities=29% Similarity=0.364 Sum_probs=79.7
Q ss_pred eeccCCccccccCccccCCCCCccEEEecCCCC-CcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeeccc
Q 046655 88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYL-LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166 (194)
Q Consensus 88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 166 (194)
..+-+|++. .++ ... ..+.|++|-+.+|.. +.....+.|..++.|+.|||++|.--+.+|..++.+-+|++|++++
T Consensus 528 ~s~~~~~~~-~~~-~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 528 MSLMNNKIE-HIA-GSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred EEEeccchh-hcc-CCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 334455555 444 232 334799999999831 3333344578899999999999887779999999999999999999
Q ss_pred CccCCCCccccCCCCCCCeEeccCCc
Q 046655 167 NYLSGYIPPTLGRLSKLEILNLSSND 192 (194)
Q Consensus 167 N~l~g~~p~~~~~l~~L~~L~ls~N~ 192 (194)
..++ .+|..++++.+|.+|++..+.
T Consensus 605 t~I~-~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 605 TGIS-HLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred CCcc-ccchHHHHHHhhheecccccc
Confidence 9999 899999999999999998764
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=4.9e-05 Score=56.73 Aligned_cols=84 Identities=26% Similarity=0.267 Sum_probs=66.0
Q ss_pred CCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCcc--ccCCCCCCC
Q 046655 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP--TLGRLSKLE 184 (194)
Q Consensus 107 l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~--~~~~l~~L~ 184 (194)
+.+...+||+.| .+. .-..|..++.|.+|.+++|+|+...|.--..++.|..|.|.+|++. .+-+ -+..+|+|+
T Consensus 41 ~d~~d~iDLtdN-dl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLE 116 (233)
T ss_pred ccccceeccccc-chh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccc
Confidence 346778999999 554 2356788999999999999999666655556688999999999998 3322 256789999
Q ss_pred eEeccCCcCC
Q 046655 185 ILNLSSNDLY 194 (194)
Q Consensus 185 ~L~ls~N~ls 194 (194)
+|.+-+|+++
T Consensus 117 ~Ltll~Npv~ 126 (233)
T KOG1644|consen 117 YLTLLGNPVE 126 (233)
T ss_pred eeeecCCchh
Confidence 9999998753
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=1.4e-05 Score=65.71 Aligned_cols=61 Identities=31% Similarity=0.471 Sum_probs=32.7
Q ss_pred CCCCCEeecCCCcccccCc--hhhccCcccceeecccCccCCC-Cccc-----cCCCCCCCeEeccCCcC
Q 046655 132 VSMLQTLELPSSSLTGIIP--LEMGRLRNLVHLDLSDNYLSGY-IPPT-----LGRLSKLEILNLSSNDL 193 (194)
Q Consensus 132 l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~g~-~p~~-----~~~l~~L~~L~ls~N~l 193 (194)
++.|+.|+|++|.+- ..+ ...+.++.|+.|+++.+.+... .|+. ...+++|++|++..|++
T Consensus 245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 445555666555554 222 2344555666666666555521 1221 23566777777777765
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=2.3e-05 Score=64.48 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=72.2
Q ss_pred CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc-Cchh-----hc
Q 046655 81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI-IPLE-----MG 154 (194)
Q Consensus 81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~-----~~ 154 (194)
..+++..+++++|+..+.-. .....++.|+.|||++|..+....-...+.++.|+.|+++.+.+... .|+. -.
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred hCCcHHHhhhhcccccceec-chhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 34455557778774321212 23445678899999999333322224567788899999998888643 2322 24
Q ss_pred cCcccceeecccCccCCCCcc--ccCCCCCCCeEeccCCcCC
Q 046655 155 RLRNLVHLDLSDNYLSGYIPP--TLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 155 ~l~~L~~L~L~~N~l~g~~p~--~~~~l~~L~~L~ls~N~ls 194 (194)
..++|++|++..|++. ..+. .+..+++|++|.+..|.++
T Consensus 299 ~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 5688999999999986 3332 3556778888887777653
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.45 E-value=8.9e-05 Score=57.22 Aligned_cols=83 Identities=24% Similarity=0.372 Sum_probs=49.6
Q ss_pred ccCCCCCccEEEecCCC-CCcccCCccccCCCCCCEeecCCCcccccCchh---hccCcccceeecccCccCCCCc----
Q 046655 103 KFSCFPNLKSFKIHSNY-LLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE---MGRLRNLVHLDLSDNYLSGYIP---- 174 (194)
Q Consensus 103 ~~~~l~~L~~L~l~~n~-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~N~l~g~~p---- 174 (194)
.+..+++|+.|.++.|+ .+++.++.-...+++|++++++.|++.. ++. ...+.+|..|++.++..++ .-
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre 136 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN-LDDYRE 136 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc-cccHHH
Confidence 35567778888888772 1222333334456788888888888762 222 4455667777777776653 11
Q ss_pred cccCCCCCCCeEec
Q 046655 175 PTLGRLSKLEILNL 188 (194)
Q Consensus 175 ~~~~~l~~L~~L~l 188 (194)
..|.-+++|++||-
T Consensus 137 ~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDG 150 (260)
T ss_pred HHHHHhhhhccccc
Confidence 12445667766653
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.05 E-value=0.00023 Score=63.17 Aligned_cols=83 Identities=27% Similarity=0.345 Sum_probs=36.1
Q ss_pred CCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccc-cCchhhccCcccceeecccCccCCCCc-------cccC
Q 046655 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG-IIPLEMGRLRNLVHLDLSDNYLSGYIP-------PTLG 178 (194)
Q Consensus 107 l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~g~~p-------~~~~ 178 (194)
+++|..||+|+. +++. + ..++.+++|+.|.+.+=.+.. ..-..+..+++|+.||+|..+... .+ +.-.
T Consensus 172 FpNL~sLDIS~T-nI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 172 FPNLRSLDISGT-NISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGM 247 (699)
T ss_pred cCccceeecCCC-CccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcc
Confidence 344444444444 3331 1 333444444444433333321 111234456666666666554431 11 1112
Q ss_pred CCCCCCeEeccCCcC
Q 046655 179 RLSKLEILNLSSNDL 193 (194)
Q Consensus 179 ~l~~L~~L~ls~N~l 193 (194)
.+|+|+.||.|++.+
T Consensus 248 ~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDI 262 (699)
T ss_pred cCccccEEecCCcch
Confidence 356666666665543
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00044 Score=53.46 Aligned_cols=86 Identities=23% Similarity=0.273 Sum_probs=63.1
Q ss_pred ccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCC--cccccCchhhccCcccceeecccCccCCCCccc---c
Q 046655 103 KFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSS--SLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPT---L 177 (194)
Q Consensus 103 ~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~---~ 177 (194)
....+..|+.+++.+. .++. -..+..|++|++|.++.| ++++.++.....+++|+++++++|+++ . ++. +
T Consensus 38 l~d~~~~le~ls~~n~-gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl 112 (260)
T KOG2739|consen 38 LTDEFVELELLSVINV-GLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPL 112 (260)
T ss_pred ccccccchhhhhhhcc-ceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchh
Confidence 3444566777777666 5542 245778899999999999 777666666667799999999999998 2 433 3
Q ss_pred CCCCCCCeEeccCCcC
Q 046655 178 GRLSKLEILNLSSNDL 193 (194)
Q Consensus 178 ~~l~~L~~L~ls~N~l 193 (194)
..+.+|..|++.+|..
T Consensus 113 ~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSV 128 (260)
T ss_pred hhhcchhhhhcccCCc
Confidence 4567788889888753
No 53
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.89 E-value=2.4e-05 Score=59.72 Aligned_cols=92 Identities=15% Similarity=0.241 Sum_probs=62.1
Q ss_pred ccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCcccc
Q 046655 98 ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTL 177 (194)
Q Consensus 98 ~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 177 (194)
++|-.++......+.||++.| .+. .+-..|..++.+..++++.|.+. -.|..++....++.+++..|..+ ..|.++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~-r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~ 107 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSN-RLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ 107 (326)
T ss_pred ccchhhhhccceeeeehhhhh-HHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc
Confidence 444344555666777777777 544 24555666677777777777776 56777777777777777777777 667777
Q ss_pred CCCCCCCeEeccCCcC
Q 046655 178 GRLSKLEILNLSSNDL 193 (194)
Q Consensus 178 ~~l~~L~~L~ls~N~l 193 (194)
+..+.++++++-.|+|
T Consensus 108 ~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEF 123 (326)
T ss_pred cccCCcchhhhccCcc
Confidence 7777777777766654
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.00011 Score=57.57 Aligned_cols=80 Identities=21% Similarity=0.236 Sum_probs=55.6
Q ss_pred CCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCc-hhhccCcccceeecccCccCCCCccc-----cC
Q 046655 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIP-LEMGRLRNLVHLDLSDNYLSGYIPPT-----LG 178 (194)
Q Consensus 105 ~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~g~~p~~-----~~ 178 (194)
..++.|++|.|+-| .++.. ..+..++.|++|+|..|.|....- .-+.++++|+.|.|..|.-.|.-+.. +.
T Consensus 38 ~kMp~lEVLsLSvN-kIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVN-KISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HhcccceeEEeecc-ccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 45778888888888 66632 346778888888888888873211 23567888888888888777655443 44
Q ss_pred CCCCCCeEe
Q 046655 179 RLSKLEILN 187 (194)
Q Consensus 179 ~l~~L~~L~ 187 (194)
-+|+|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 567777665
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.74 E-value=0.0038 Score=52.00 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=32.6
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCC-cccccCch
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSS-SLTGIIPL 151 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~ 151 (194)
.+..|++++|.++ .+| . -.++|++|.++++..++ .+|..+. .+|++|++++| .+. .+|.
T Consensus 53 ~l~~L~Is~c~L~-sLP-~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~ 112 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLP-V---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE 112 (426)
T ss_pred CCCEEEeCCCCCc-ccC-C---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc
Confidence 3445666777666 665 1 12357777777653443 4454432 46777777766 343 4443
No 56
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.64 E-value=0.00076 Score=31.94 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=9.6
Q ss_pred cceeecccCccCCCCccccC
Q 046655 159 LVHLDLSDNYLSGYIPPTLG 178 (194)
Q Consensus 159 L~~L~L~~N~l~g~~p~~~~ 178 (194)
|++||+++|+++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.59 E-value=0.0018 Score=57.61 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=66.3
Q ss_pred eeeeeeeeccCCcccc-ccCccccCCCCCccEEEecCCCCCccc-CCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655 82 VIGVSLLWYENDNITG-ELGRFKFSCFPNLKSFKIHSNYLLSGS-IPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL 159 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 159 (194)
-.+|+.|+++|.+... ..+...-..+|+|++|.+.+- .+... .-.-..++++|..||+++.+++.. ..++.+++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 3455556667654431 112111234788888888876 44321 122344678888888888888743 667788888
Q ss_pred ceeecccCccCC-CCccccCCCCCCCeEeccCCc
Q 046655 160 VHLDLSDNYLSG-YIPPTLGRLSKLEILNLSSND 192 (194)
Q Consensus 160 ~~L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~ 192 (194)
+.|.+.+=.+.. ..-..+..+++|++||+|...
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 888776655551 111246678888888888653
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.47 E-value=0.0011 Score=31.36 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=12.5
Q ss_pred CCCEeecCCCcccccCchhhcc
Q 046655 134 MLQTLELPSSSLTGIIPLEMGR 155 (194)
Q Consensus 134 ~L~~L~L~~n~l~~~~p~~~~~ 155 (194)
+|++|++++|+++ .+|++|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 56655543
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00058 Score=54.15 Aligned_cols=61 Identities=33% Similarity=0.284 Sum_probs=24.4
Q ss_pred CCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCC-CccccCCCCCCCeEeccCC
Q 046655 131 AVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGY-IPPTLGRLSKLEILNLSSN 191 (194)
Q Consensus 131 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~-~p~~~~~l~~L~~L~ls~N 191 (194)
+|+.|+.|+|+.|.+...|-..-....+|+.+-|.+..+... ....+..+|.++.|+++.|
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 444555555555554422211101233444444444444321 1122334444444444444
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.21 E-value=0.0013 Score=52.96 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=29.6
Q ss_pred CCCCCCEeecCCCccccc----CchhhccCcccceeecccCccCC----CCccccCCCCCCCeEeccCCcC
Q 046655 131 AVSMLQTLELPSSSLTGI----IPLEMGRLRNLVHLDLSDNYLSG----YIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 131 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~l 193 (194)
..+.|+.+.+..|.+.-. +-..+..+++|+.||+..|-|+- .+...+..+++|+.++++++.+
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 344455555555544311 11234455666666666665551 1122234445556666555543
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.09 E-value=0.001 Score=53.59 Aligned_cols=89 Identities=20% Similarity=0.313 Sum_probs=36.7
Q ss_pred cCCCCCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCcccccCchh----h-ccCcccceeecccCccCCC--
Q 046655 104 FSCFPNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGIIPLE----M-GRLRNLVHLDLSDNYLSGY-- 172 (194)
Q Consensus 104 ~~~l~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~----~-~~l~~L~~L~L~~N~l~g~-- 172 (194)
+..+++|++||+..| .++.. +...++.+++|+.|+++++.+...=... + ...++|+.+.+.+|.++..
T Consensus 209 l~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 334445555555555 33311 1222333444555555555444221111 1 1234555555555555411
Q ss_pred --CccccCCCCCCCeEeccCCcC
Q 046655 173 --IPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 173 --~p~~~~~l~~L~~L~ls~N~l 193 (194)
+-......+.|..|+|++|.+
T Consensus 288 ~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 288 LALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhcchhhHHhcCCcccc
Confidence 111123345555555555543
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.003 Score=50.26 Aligned_cols=81 Identities=26% Similarity=0.323 Sum_probs=38.6
Q ss_pred eeeeeccCCcccc--ccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc-CchhhccCcccce
Q 046655 85 VSLLWYENDNITG--ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI-IPLEMGRLRNLVH 161 (194)
Q Consensus 85 l~~l~l~~n~l~~--~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~ 161 (194)
+..+++.+|.|+. ++. ..+.++|+|++|+++.| .+...|...-..+.+|+.|-|.+..+... .-..+..+|.++.
T Consensus 73 v~elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIG-AILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhcccchhccHHHHH-HHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 3335556666652 122 22345666666666666 55433322112345566666666555432 1122344445555
Q ss_pred eecccC
Q 046655 162 LDLSDN 167 (194)
Q Consensus 162 L~L~~N 167 (194)
+.++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 545444
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.24 E-value=0.056 Score=37.05 Aligned_cols=99 Identities=21% Similarity=0.355 Sum_probs=53.2
Q ss_pred eeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeec
Q 046655 85 VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164 (194)
Q Consensus 85 l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 164 (194)
+..+.+.. .+. .++...|...+.++.+++..+ +...-...|..+.+++.+.+.. .+...-...|..++.|+.+++
T Consensus 14 l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 14 LESITFPN-TIK-KIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp --EEEETS-T---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCEEEECC-Cee-EeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 33444443 455 666667888888999998776 3434455677887899999876 443233345777889999998
Q ss_pred ccCccCCCCccccCCCCCCCeEeccC
Q 046655 165 SDNYLSGYIPPTLGRLSKLEILNLSS 190 (194)
Q Consensus 165 ~~N~l~g~~p~~~~~l~~L~~L~ls~ 190 (194)
..+ +...-...|.+. +++.+.+..
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TT
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECC
Confidence 765 442223346665 788877764
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.0014 Score=52.02 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=22.5
Q ss_pred eccCCccccccCccccCCCCCccEEEecCCCCCccc-CCccccCCCCCCEeecCCCcc
Q 046655 89 WYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGS-IPSEIAAVSMLQTLELPSSSL 145 (194)
Q Consensus 89 ~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~-~p~~~~~l~~L~~L~L~~n~l 145 (194)
.++|+++...+- ..+..-..|+.++++++..++.. ..--+..++.|..|+|+++.+
T Consensus 216 SlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 216 SLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred cccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 334444443333 23334445555555554322211 011123344455555555443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.0014 Score=51.63 Aligned_cols=81 Identities=22% Similarity=0.273 Sum_probs=62.7
Q ss_pred CCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCcc--ccCCCCCCC
Q 046655 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP--TLGRLSKLE 184 (194)
Q Consensus 107 l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~--~~~~l~~L~ 184 (194)
+...+.|++=++ .+.. -....+|+.|+.|.|+-|+|+.. ..+..|++|+.|.|..|.|. .+-+ .+.++|+|+
T Consensus 18 l~~vkKLNcwg~-~L~D--Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDD--ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCC-CccH--HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 455667777676 5552 23346799999999999999955 44889999999999999998 4443 367899999
Q ss_pred eEeccCCcC
Q 046655 185 ILNLSSNDL 193 (194)
Q Consensus 185 ~L~ls~N~l 193 (194)
.|.|..|+-
T Consensus 92 ~LWL~ENPC 100 (388)
T KOG2123|consen 92 TLWLDENPC 100 (388)
T ss_pred hHhhccCCc
Confidence 999988863
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.94 E-value=0.086 Score=36.10 Aligned_cols=99 Identities=18% Similarity=0.303 Sum_probs=47.3
Q ss_pred CCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc
Q 046655 78 SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR 157 (194)
Q Consensus 78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 157 (194)
.+.....+..+.+.++ +. .++...|...+.++.+.+..+ . ...-...|..+++++.+++..+ +...-...|.+.
T Consensus 30 ~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~~-~-~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~- 103 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPNN-L-KSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC- 103 (129)
T ss_dssp TTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETST-T--EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--
T ss_pred hccccccccccccccc-cc-ccceeeeeccccccccccccc-c-cccccccccccccccccccCcc-ccEEchhhhcCC-
Confidence 3444445555666553 55 666567777778888888654 2 2233455667888999888765 442333456666
Q ss_pred ccceeecccCccCCCCccccCCCCCC
Q 046655 158 NLVHLDLSDNYLSGYIPPTLGRLSKL 183 (194)
Q Consensus 158 ~L~~L~L~~N~l~g~~p~~~~~l~~L 183 (194)
.|+.+.+.. .++..-...|.++++|
T Consensus 104 ~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 104 NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T--EEE-TT-B-SS----GGG-----
T ss_pred CceEEEECC-CccEECCccccccccC
Confidence 888887765 4442333446666555
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.88 E-value=0.077 Score=44.40 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=18.2
Q ss_pred cccceeecccCccCCCCccccCCCCCCCeEeccCC
Q 046655 157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191 (194)
Q Consensus 157 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N 191 (194)
++|++|+++++... .+|..+- .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 36777777776655 3443322 36666666554
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.61 E-value=0.017 Score=25.36 Aligned_cols=12 Identities=58% Similarity=0.731 Sum_probs=3.9
Q ss_pred cceeecccCccC
Q 046655 159 LVHLDLSDNYLS 170 (194)
Q Consensus 159 L~~L~L~~N~l~ 170 (194)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 344444444433
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.95 E-value=0.031 Score=44.10 Aligned_cols=104 Identities=24% Similarity=0.316 Sum_probs=59.4
Q ss_pred eeeeccCCccccc----cCccccCCCCCccEEEecCCCCCcccCC-----------ccccCCCCCCEeecCCCcccccCc
Q 046655 86 SLLWYENDNITGE----LGRFKFSCFPNLKSFKIHSNYLLSGSIP-----------SEIAAVSMLQTLELPSSSLTGIIP 150 (194)
Q Consensus 86 ~~l~l~~n~l~~~----lp~~~~~~l~~L~~L~l~~n~~l~~~~p-----------~~~~~l~~L~~L~L~~n~l~~~~p 150 (194)
.-++++||.|..+ +- ..+.+-.+|+..+++.- ++|..- ..+.+|+.|++.+||.|.|....|
T Consensus 33 ~evdLSGNtigtEA~e~l~-~~ia~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 33 VEVDLSGNTIGTEAMEELC-NVIANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred eEEeccCCcccHHHHHHHH-HHHhhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 3356677766522 12 23344556666666553 333321 224467788888888888876666
Q ss_pred hh----hccCcccceeecccCccCCCCccc-cC-------------CCCCCCeEeccCCcC
Q 046655 151 LE----MGRLRNLVHLDLSDNYLSGYIPPT-LG-------------RLSKLEILNLSSNDL 193 (194)
Q Consensus 151 ~~----~~~l~~L~~L~L~~N~l~g~~p~~-~~-------------~l~~L~~L~ls~N~l 193 (194)
+. +.+-..|.+|.+++|.+- ++... ++ .-|.|+.++...|++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 54 344567888888887765 22211 11 345677777776654
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.44 E-value=0.14 Score=40.51 Aligned_cols=104 Identities=21% Similarity=0.241 Sum_probs=55.4
Q ss_pred eeeeeeccCCccccccCccc----cCCCCCccEEEecCCCCCcccCC-ccc-------------cCCCCCCEeecCCCcc
Q 046655 84 GVSLLWYENDNITGELGRFK----FSCFPNLKSFKIHSNYLLSGSIP-SEI-------------AAVSMLQTLELPSSSL 145 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~----~~~l~~L~~L~l~~n~~l~~~~p-~~~-------------~~l~~L~~L~L~~n~l 145 (194)
+++..+++.|.+....| +. +..-..|++|.+++| .+- .+. ..+ ..-+.|+.+....|++
T Consensus 93 ~l~~v~LSDNAfg~~~~-e~L~d~is~~t~l~HL~l~Nn-GlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 93 RLQKVDLSDNAFGSEFP-EELGDLISSSTDLVHLKLNNN-GLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cceeeeccccccCcccc-hHHHHHHhcCCCceeEEeecC-CCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 34445566666665554 22 233455667777666 432 221 111 1235566666666666
Q ss_pred cccCchh-----hccCcccceeecccCccCCCCcc--------ccCCCCCCCeEeccCCcCC
Q 046655 146 TGIIPLE-----MGRLRNLVHLDLSDNYLSGYIPP--------TLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 146 ~~~~p~~-----~~~l~~L~~L~L~~N~l~g~~p~--------~~~~l~~L~~L~ls~N~ls 194 (194)
.. -|.. +..-..|+.+.+..|.|. |. .+..+.+|++||+..|-|+
T Consensus 170 en-gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 170 EN-GSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cc-CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 42 2211 222245666666666665 43 1345678888888888654
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.43 E-value=0.0016 Score=49.95 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=66.1
Q ss_pred eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecc
Q 046655 86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS 165 (194)
Q Consensus 86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 165 (194)
..++++.|++. .+. ..|..++.+..||++-| .+. ..|..++.+..++.+++..|.++ ..|.+++..++++++++-
T Consensus 45 tvld~~s~r~v-n~~-~n~s~~t~~~rl~~skn-q~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 45 TVLDLSSNRLV-NLG-KNFSILTRLVRLDLSKN-QIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeehhhhhHHH-hhc-cchHHHHHHHHHhccHh-hHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 34666777776 665 56777888999999988 665 57889999899999999999998 889999999999999999
Q ss_pred cCccC
Q 046655 166 DNYLS 170 (194)
Q Consensus 166 ~N~l~ 170 (194)
.|.|.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 88876
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.04 E-value=0.11 Score=25.22 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=6.4
Q ss_pred CCCEeecCCCccc
Q 046655 134 MLQTLELPSSSLT 146 (194)
Q Consensus 134 ~L~~L~L~~n~l~ 146 (194)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4445555555544
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.04 E-value=0.11 Score=25.22 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=6.4
Q ss_pred CCCEeecCCCccc
Q 046655 134 MLQTLELPSSSLT 146 (194)
Q Consensus 134 ~L~~L~L~~n~l~ 146 (194)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4445555555544
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.43 E-value=0.08 Score=25.24 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=7.2
Q ss_pred CCCCEeecCCCcccc
Q 046655 133 SMLQTLELPSSSLTG 147 (194)
Q Consensus 133 ~~L~~L~L~~n~l~~ 147 (194)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 455566666665553
No 75
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.89 E-value=0.37 Score=23.66 Aligned_cols=13 Identities=46% Similarity=0.690 Sum_probs=7.0
Q ss_pred CCCCeEeccCCcC
Q 046655 181 SKLEILNLSSNDL 193 (194)
Q Consensus 181 ~~L~~L~ls~N~l 193 (194)
.+|+.|+++.|+|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555554
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.95 E-value=0.015 Score=46.40 Aligned_cols=82 Identities=24% Similarity=0.290 Sum_probs=48.0
Q ss_pred CccEEEecCCCCCcc-cCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccC-ccCC-CCccccCCCCCCCe
Q 046655 109 NLKSFKIHSNYLLSG-SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN-YLSG-YIPPTLGRLSKLEI 185 (194)
Q Consensus 109 ~L~~L~l~~n~~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~g-~~p~~~~~l~~L~~ 185 (194)
.++++||+.. .++- .+..-+..+..|+.|.|.++++.+.+-..+.+-..|+.++++.. .|+. .+.-.+..++.|+.
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4677777766 4442 12233455667777777777777666666777777777777654 3441 11122455666666
Q ss_pred EeccCC
Q 046655 186 LNLSSN 191 (194)
Q Consensus 186 L~ls~N 191 (194)
|+++-+
T Consensus 265 LNlsWc 270 (419)
T KOG2120|consen 265 LNLSWC 270 (419)
T ss_pred cCchHh
Confidence 666543
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.46 E-value=0.52 Score=23.15 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=13.2
Q ss_pred cccceeecccCccCCCCcc
Q 046655 157 RNLVHLDLSDNYLSGYIPP 175 (194)
Q Consensus 157 ~~L~~L~L~~N~l~g~~p~ 175 (194)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 45777888888887 5665
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.66 E-value=0.81 Score=22.69 Aligned_cols=13 Identities=46% Similarity=0.611 Sum_probs=7.9
Q ss_pred CCCCeEeccCCcC
Q 046655 181 SKLEILNLSSNDL 193 (194)
Q Consensus 181 ~~L~~L~ls~N~l 193 (194)
++|++|||++|.|
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3566666666655
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.86 E-value=0.16 Score=38.26 Aligned_cols=78 Identities=19% Similarity=0.165 Sum_probs=36.5
Q ss_pred eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCcccc-CCCCCCEeecCCC-cccccCchhhccCcccceeecc
Q 046655 88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIA-AVSMLQTLELPSS-SLTGIIPLEMGRLRNLVHLDLS 165 (194)
Q Consensus 88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~ 165 (194)
++=++..|. ...-+.+.+++.++.|.+..+..+..---+.++ -.++|+.|++++| +|+..--..+..+++|+.|.+.
T Consensus 106 VDAsds~I~-~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 106 VDASDSSIM-YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred EecCCchHH-HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 443444444 222245556666666666665322211111111 2356777777654 3443222345555666666554
Q ss_pred c
Q 046655 166 D 166 (194)
Q Consensus 166 ~ 166 (194)
+
T Consensus 185 ~ 185 (221)
T KOG3864|consen 185 D 185 (221)
T ss_pred C
Confidence 3
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.44 E-value=0.94 Score=34.26 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=18.6
Q ss_pred CCCccEEEecCCCCCcccCCccccCCCCCCEeecC
Q 046655 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELP 141 (194)
Q Consensus 107 l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~ 141 (194)
.++|+.|++++|+.++..=-..+..+++|+.|.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 35666666666655553323334455555555443
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=68.13 E-value=3.4 Score=34.64 Aligned_cols=89 Identities=25% Similarity=0.245 Sum_probs=48.0
Q ss_pred cCCCCCccEEEecCCCCCcccC----CccccCCCCCCEeecCCCc-ccccCchhhc-cCcccceeecccCc-cCCC-Ccc
Q 046655 104 FSCFPNLKSFKIHSNYLLSGSI----PSEIAAVSMLQTLELPSSS-LTGIIPLEMG-RLRNLVHLDLSDNY-LSGY-IPP 175 (194)
Q Consensus 104 ~~~l~~L~~L~l~~n~~l~~~~----p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~-~l~~L~~L~L~~N~-l~g~-~p~ 175 (194)
....+.|+.|+++++....... ......+++|+.+++++.. +++..-..+. .++.|+.|.+.+.. ++.. +-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 3456677888877620111111 1223345777788887777 4433223333 26778888765554 3311 112
Q ss_pred ccCCCCCCCeEeccCCc
Q 046655 176 TLGRLSKLEILNLSSND 192 (194)
Q Consensus 176 ~~~~l~~L~~L~ls~N~ 192 (194)
...++++|++|+++.+.
T Consensus 290 i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhcCcccEEeeecCc
Confidence 23467778888887653
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.04 E-value=5.1 Score=34.83 Aligned_cols=61 Identities=28% Similarity=0.360 Sum_probs=26.5
Q ss_pred CCCccEEEecCCCCCccc--CCccccCCCCCCEeecCCC--cccccCchhhccC--cccceeecccCccC
Q 046655 107 FPNLKSFKIHSNYLLSGS--IPSEIAAVSMLQTLELPSS--SLTGIIPLEMGRL--RNLVHLDLSDNYLS 170 (194)
Q Consensus 107 l~~L~~L~l~~n~~l~~~--~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l--~~L~~L~L~~N~l~ 170 (194)
.+.+..+.|++| ++-.. +..--...+.|..|+|++| .+. .-.++.++ ..|+.|.+.+|.+.
T Consensus 217 ~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred Ccceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 445555666666 33211 0000112355666666666 222 11222221 23556666666655
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=50.41 E-value=0.6 Score=40.03 Aligned_cols=59 Identities=34% Similarity=0.407 Sum_probs=32.1
Q ss_pred CCEeecCCCccccc----CchhhccC-cccceeecccCccCCC----CccccCCCCCCCeEeccCCcC
Q 046655 135 LQTLELPSSSLTGI----IPLEMGRL-RNLVHLDLSDNYLSGY----IPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 135 L~~L~L~~n~l~~~----~p~~~~~l-~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l 193 (194)
+..+++.+|.+.+. ..+.+..+ ..++.++++.|.++.. +...+..++.++.+.+++|.+
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 44566666665532 12223334 4566777777776632 333344556666777766654
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=48.57 E-value=15 Score=17.43 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=4.7
Q ss_pred CccEEEecCC
Q 046655 109 NLKSFKIHSN 118 (194)
Q Consensus 109 ~L~~L~l~~n 118 (194)
+|++|+++++
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444444
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=44.46 E-value=16 Score=37.93 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=27.7
Q ss_pred eccCCccccccCccccCCCCCccEEEecCCCCCc
Q 046655 89 WYENDNITGELGRFKFSCFPNLKSFKIHSNYLLS 122 (194)
Q Consensus 89 ~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~ 122 (194)
+|++|+|. .+|...|..+++|+.|+|++| .+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgN-Pw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGN-PFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCC-ccc
Confidence 47889999 898788889999999999999 655
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.07 E-value=11 Score=32.86 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=16.8
Q ss_pred CCCCEeecCCCcccccC--chhhccCcccceeecccC
Q 046655 133 SMLQTLELPSSSLTGII--PLEMGRLRNLVHLDLSDN 167 (194)
Q Consensus 133 ~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N 167 (194)
+.+..++|++|++.... ..--..-++|..|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555566666654210 011112355666666666
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.24 E-value=43 Score=35.12 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=27.0
Q ss_pred EecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 114 KIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 114 ~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
||++| .++..-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN-~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNN-KISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCC-cCCccChHHhccCCCceEEEeeCCccc
Confidence 57889 888666677888999999999999885
No 88
>PF15240 Pro-rich: Proline-rich
Probab=21.85 E-value=56 Score=24.19 Aligned_cols=7 Identities=0% Similarity=0.634 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 046655 12 VVIIILI 18 (194)
Q Consensus 12 l~~l~l~ 18 (194)
||+||.+
T Consensus 2 LlVLLSv 8 (179)
T PF15240_consen 2 LLVLLSV 8 (179)
T ss_pred hhHHHHH
Confidence 3344333
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=20.50 E-value=49 Score=28.18 Aligned_cols=106 Identities=19% Similarity=0.120 Sum_probs=49.4
Q ss_pred eeeeeeeccCCccccccCccc-cCCCCCccEEEecCCCCCc--ccCCccccCCCCCCEeecCCCcccccC-----chhhc
Q 046655 83 IGVSLLWYENDNITGELGRFK-FSCFPNLKSFKIHSNYLLS--GSIPSEIAAVSMLQTLELPSSSLTGII-----PLEMG 154 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~-~~~l~~L~~L~l~~n~~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~ 154 (194)
.+|+.+.+++++..+...-.. -.+.++|+.+++... ... +.+..--.+++.|+.+.++++...... -..-.
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~-~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC-GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhccccc-ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 556666666655322211011 124566777777666 211 111111234667777777766543121 11123
Q ss_pred cCcccceeecccCccC-CCCccccCCCCCCCeEecc
Q 046655 155 RLRNLVHLDLSDNYLS-GYIPPTLGRLSKLEILNLS 189 (194)
Q Consensus 155 ~l~~L~~L~L~~N~l~-g~~p~~~~~l~~L~~L~ls 189 (194)
.+..|+.+.|++.... ...-+.+..+++|+.+++-
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 4455666666665433 1111223445566555553
Done!