Query 046655
Match_columns 194
No_of_seqs 221 out of 2781
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 04:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-25 3.7E-30 179.3 9.2 154 34-193 3-161 (313)
2 4eco_A Uncharacterized protein 99.9 2.1E-22 7.2E-27 174.3 8.9 151 36-194 29-287 (636)
3 3rgz_A Protein brassinosteroid 99.9 4.9E-22 1.7E-26 175.3 7.7 147 35-192 10-162 (768)
4 4ecn_A Leucine-rich repeat pro 99.8 1.5E-21 5E-26 173.8 7.6 150 35-194 267-529 (876)
5 4fcg_A Uncharacterized protein 99.8 4.9E-21 1.7E-25 153.4 2.3 157 32-193 22-218 (328)
6 3e6j_A Variable lymphocyte rec 99.8 1.1E-18 3.7E-23 133.0 11.9 128 63-193 13-147 (229)
7 1w8a_A SLIT protein; signaling 99.8 3.2E-18 1.1E-22 127.0 10.6 128 65-194 4-139 (192)
8 2o6r_A Variable lymphocyte rec 99.7 1.3E-17 4.4E-22 121.9 11.9 127 66-194 4-137 (177)
9 2o6s_A Variable lymphocyte rec 99.7 1.6E-17 5.6E-22 124.3 11.9 125 67-193 5-136 (208)
10 2v9t_B SLIT homolog 2 protein 99.7 1.6E-17 5.4E-22 125.8 11.7 114 78-193 51-164 (220)
11 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-17 3.6E-22 126.8 9.5 113 79-193 53-165 (220)
12 3rgz_A Protein brassinosteroid 99.7 4.4E-18 1.5E-22 150.1 8.4 88 106-194 630-717 (768)
13 2v70_A SLIT-2, SLIT homolog 2 99.7 2.8E-17 9.5E-22 124.5 11.4 130 64-194 6-142 (220)
14 2wfh_A SLIT homolog 2 protein 99.7 2.4E-17 8.3E-22 122.5 10.8 126 65-193 6-138 (193)
15 2v9t_B SLIT homolog 2 protein 99.7 2.3E-17 7.7E-22 125.0 10.7 129 64-194 6-141 (220)
16 3e6j_A Variable lymphocyte rec 99.7 4.5E-17 1.5E-21 124.0 12.0 125 67-194 48-172 (229)
17 2o6q_A Variable lymphocyte rec 99.7 6E-17 2.1E-21 126.0 11.9 105 86-192 40-144 (270)
18 3m19_A Variable lymphocyte rec 99.7 9.5E-17 3.2E-21 123.6 11.9 122 70-193 70-191 (251)
19 3m19_A Variable lymphocyte rec 99.7 1.1E-16 3.6E-21 123.4 11.9 126 67-194 43-168 (251)
20 1ogq_A PGIP-2, polygalacturona 99.7 7.8E-18 2.7E-22 133.9 5.7 116 76-193 69-186 (313)
21 2o6s_A Variable lymphocyte rec 99.7 2E-16 6.9E-21 118.3 11.8 126 67-194 36-161 (208)
22 3rfs_A Internalin B, repeat mo 99.7 2.8E-16 9.6E-21 122.4 11.9 122 70-193 96-217 (272)
23 3g39_A Variable lymphocyte rec 99.7 4.4E-16 1.5E-20 113.4 10.8 102 88-194 14-115 (170)
24 4g8a_A TOLL-like receptor 4; l 99.7 4.8E-16 1.6E-20 133.0 11.3 108 84-193 53-160 (635)
25 2je0_A Acidic leucine-rich nuc 99.7 3.5E-16 1.2E-20 111.0 8.7 107 83-193 17-125 (149)
26 2r9u_A Variable lymphocyte rec 99.7 8.7E-16 3E-20 112.3 10.8 104 86-194 15-118 (174)
27 3v47_A TOLL-like receptor 5B a 99.6 5.9E-16 2E-20 128.2 10.7 124 69-194 285-408 (455)
28 2o6q_A Variable lymphocyte rec 99.6 1.4E-15 4.7E-20 118.3 11.9 112 80-193 82-193 (270)
29 1ozn_A Reticulon 4 receptor; N 99.6 7.2E-16 2.5E-20 120.6 9.9 115 77-193 123-237 (285)
30 4g8a_A TOLL-like receptor 4; l 99.6 8.7E-16 3E-20 131.4 11.1 124 70-194 456-580 (635)
31 3rfs_A Internalin B, repeat mo 99.6 1.4E-15 4.7E-20 118.5 11.3 115 78-194 80-194 (272)
32 2z62_A TOLL-like receptor 4, v 99.6 1.2E-15 4E-20 118.8 10.5 126 67-194 36-162 (276)
33 2xot_A Amphoterin-induced prot 99.6 1.3E-15 4.4E-20 123.3 11.0 123 69-194 49-176 (361)
34 2xot_A Amphoterin-induced prot 99.6 1.5E-15 5.3E-20 122.8 10.9 129 64-194 13-149 (361)
35 1ozn_A Reticulon 4 receptor; N 99.6 2.4E-15 8.2E-20 117.6 11.7 114 78-193 75-189 (285)
36 3v47_A TOLL-like receptor 5B a 99.6 9.5E-16 3.3E-20 127.0 9.7 126 67-193 38-166 (455)
37 2z66_A Variable lymphocyte rec 99.6 1.5E-15 5.2E-20 119.8 10.4 123 69-193 136-260 (306)
38 2ell_A Acidic leucine-rich nuc 99.6 9.4E-16 3.2E-20 111.0 8.4 123 67-193 32-159 (168)
39 1p9a_G Platelet glycoprotein I 99.6 3.2E-15 1.1E-19 117.6 11.9 111 80-193 74-184 (290)
40 3vq2_A TLR4, TOLL-like recepto 99.6 2E-15 6.8E-20 129.3 11.3 126 67-194 40-166 (606)
41 2z81_A CD282 antigen, TOLL-lik 99.6 1.6E-15 5.4E-20 128.4 10.3 122 68-192 3-134 (549)
42 2wfh_A SLIT homolog 2 protein 99.6 5.6E-15 1.9E-19 109.6 11.3 103 86-194 13-115 (193)
43 4eco_A Uncharacterized protein 99.6 6.7E-16 2.3E-20 133.6 7.1 123 68-194 192-343 (636)
44 2z80_A TOLL-like receptor 2, v 99.6 2.9E-15 9.8E-20 120.6 10.3 105 84-191 53-159 (353)
45 1w8a_A SLIT protein; signaling 99.6 4.2E-15 1.4E-19 110.1 10.2 104 86-194 11-115 (192)
46 2z66_A Variable lymphocyte rec 99.6 3E-15 1E-19 118.1 9.9 115 78-194 121-236 (306)
47 4fcg_A Uncharacterized protein 99.6 2.3E-15 7.9E-20 120.4 9.2 108 82-193 182-289 (328)
48 4b8c_D Glucose-repressible alc 99.6 1.6E-15 5.4E-20 133.2 8.5 110 79-194 220-329 (727)
49 1p9a_G Platelet glycoprotein I 99.6 4.8E-15 1.6E-19 116.7 10.3 123 67-194 39-161 (290)
50 2ell_A Acidic leucine-rich nuc 99.6 3.2E-15 1.1E-19 108.1 8.4 108 82-194 23-133 (168)
51 2ifg_A High affinity nerve gro 99.6 8.1E-15 2.8E-19 117.6 11.1 108 68-194 7-116 (347)
52 3vq2_A TLR4, TOLL-like recepto 99.6 7.2E-15 2.5E-19 125.8 10.9 110 83-194 32-141 (606)
53 2id5_A Lingo-1, leucine rich r 99.6 8.2E-15 2.8E-19 122.3 10.5 123 69-193 42-164 (477)
54 1dce_A Protein (RAB geranylger 99.6 5.2E-15 1.8E-19 126.5 9.4 102 85-193 443-545 (567)
55 3j0a_A TOLL-like receptor 5; m 99.6 8.9E-15 3E-19 130.2 10.9 127 67-194 32-161 (844)
56 2z63_A TOLL-like receptor 4, v 99.6 1.1E-14 3.6E-19 123.7 10.9 126 67-194 36-162 (570)
57 4ezg_A Putative uncharacterize 99.6 8.1E-15 2.8E-19 108.8 8.7 107 81-193 86-193 (197)
58 4ezg_A Putative uncharacterize 99.6 5.7E-15 1.9E-19 109.7 7.8 110 79-194 62-172 (197)
59 2je0_A Acidic leucine-rich nuc 99.6 3.3E-15 1.1E-19 106.0 6.2 120 67-190 25-149 (149)
60 4ecn_A Leucine-rich repeat pro 99.6 2.9E-15 9.8E-20 133.5 6.9 123 68-194 434-586 (876)
61 3o6n_A APL1; leucine-rich repe 99.6 6.3E-15 2.2E-19 120.0 8.4 108 83-193 69-177 (390)
62 2z62_A TOLL-like receptor 4, v 99.6 2.1E-14 7.2E-19 111.7 11.0 109 84-194 29-137 (276)
63 3zyj_A Leucine-rich repeat-con 99.6 4.6E-15 1.6E-19 122.9 7.5 124 67-192 72-196 (440)
64 3oja_B Anopheles plasmodium-re 99.6 8.1E-15 2.8E-19 125.9 8.9 110 83-194 75-184 (597)
65 2id5_A Lingo-1, leucine rich r 99.6 1.4E-14 4.9E-19 120.8 10.0 124 68-193 65-188 (477)
66 3t6q_A CD180 antigen; protein- 99.6 1.8E-14 6.1E-19 123.4 10.6 124 68-193 42-165 (606)
67 2z63_A TOLL-like receptor 4, v 99.5 1.4E-14 4.8E-19 122.9 9.7 114 79-194 417-531 (570)
68 3zyj_A Leucine-rich repeat-con 99.5 2.4E-14 8.2E-19 118.5 10.8 110 80-193 182-291 (440)
69 1xku_A Decorin; proteoglycan, 99.5 3.7E-14 1.3E-18 113.0 11.3 123 65-192 27-156 (330)
70 3oja_B Anopheles plasmodium-re 99.5 9.5E-15 3.3E-19 125.4 8.2 109 83-193 51-159 (597)
71 2ft3_A Biglycan; proteoglycan, 99.5 3.5E-14 1.2E-18 113.3 10.8 123 66-193 30-159 (332)
72 1ziw_A TOLL-like receptor 3; i 99.5 1.3E-14 4.3E-19 126.0 8.7 123 69-193 35-157 (680)
73 3t6q_A CD180 antigen; protein- 99.5 2.8E-14 9.7E-19 122.2 10.6 109 84-194 34-142 (606)
74 2xwt_C Thyrotropin receptor; s 99.5 2.4E-14 8.2E-19 109.2 9.1 103 85-191 33-140 (239)
75 1a9n_A U2A', U2A'; complex (nu 99.5 2E-14 6.7E-19 104.9 8.2 104 84-193 43-152 (176)
76 3j0a_A TOLL-like receptor 5; m 99.5 2E-14 6.7E-19 128.0 9.7 120 69-194 14-136 (844)
77 1wwl_A Monocyte differentiatio 99.5 4.8E-15 1.6E-19 117.6 5.0 111 80-193 118-240 (312)
78 3o6n_A APL1; leucine-rich repe 99.5 4.5E-14 1.5E-18 115.0 10.8 109 82-193 44-153 (390)
79 4b8c_D Glucose-repressible alc 99.5 1.8E-14 6.3E-19 126.4 9.0 154 34-194 129-306 (727)
80 2xwt_C Thyrotropin receptor; s 99.5 1.1E-14 3.7E-19 111.1 6.6 123 68-194 40-169 (239)
81 2o6r_A Variable lymphocyte rec 99.5 8.4E-14 2.9E-18 101.5 10.8 104 86-194 10-113 (177)
82 1xku_A Decorin; proteoglycan, 99.5 3.7E-14 1.3E-18 113.0 9.5 108 81-194 169-276 (330)
83 3zyi_A Leucine-rich repeat-con 99.5 4.2E-14 1.4E-18 117.5 10.1 104 84-189 76-179 (452)
84 2z81_A CD282 antigen, TOLL-lik 99.5 1.3E-14 4.4E-19 122.8 6.6 125 67-193 34-160 (549)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 4.5E-14 1.5E-18 120.2 9.9 105 84-193 53-158 (562)
86 3zyi_A Leucine-rich repeat-con 99.5 6.8E-14 2.3E-18 116.2 10.7 123 67-192 83-207 (452)
87 2z80_A TOLL-like receptor 2, v 99.5 1.6E-14 5.6E-19 116.2 6.6 121 69-192 62-185 (353)
88 2z7x_B TOLL-like receptor 1, v 99.5 2.6E-14 8.9E-19 120.4 7.4 106 83-193 21-127 (520)
89 1ziw_A TOLL-like receptor 3; i 99.5 9.1E-14 3.1E-18 120.6 10.6 122 69-191 391-514 (680)
90 3o53_A Protein LRIM1, AGAP0063 99.5 6.7E-14 2.3E-18 111.2 8.8 119 70-194 131-250 (317)
91 1wwl_A Monocyte differentiatio 99.5 1.6E-14 5.6E-19 114.5 5.2 110 83-194 149-266 (312)
92 3oja_A Leucine-rich immune mol 99.5 6.1E-14 2.1E-18 117.8 8.6 111 78-194 139-250 (487)
93 1a9n_A U2A', U2A'; complex (nu 99.5 2.7E-14 9.2E-19 104.2 5.5 106 82-194 18-126 (176)
94 2z7x_B TOLL-like receptor 1, v 99.5 6.8E-14 2.3E-18 117.8 8.7 107 83-194 374-481 (520)
95 2ft3_A Biglycan; proteoglycan, 99.5 9.3E-14 3.2E-18 110.9 8.4 84 108-193 193-276 (332)
96 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.5E-13 5.3E-18 116.9 9.7 107 82-193 402-509 (562)
97 3oja_A Leucine-rich immune mol 99.5 8.7E-14 3E-18 116.9 7.5 119 68-194 108-227 (487)
98 3g39_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 97.8 9.3 106 65-172 5-117 (170)
99 1h6t_A Internalin B; cell adhe 99.4 5E-13 1.7E-17 105.1 10.6 105 79-193 86-190 (291)
100 4glp_A Monocyte differentiatio 99.4 4.9E-14 1.7E-18 111.6 4.7 110 81-193 143-263 (310)
101 4fmz_A Internalin; leucine ric 99.4 2.6E-13 9E-18 108.6 8.7 107 80-194 240-346 (347)
102 4glp_A Monocyte differentiatio 99.4 2.8E-13 9.5E-18 107.2 8.0 118 71-193 157-284 (310)
103 1h6u_A Internalin H; cell adhe 99.4 9.8E-13 3.4E-17 104.2 10.5 105 79-193 81-185 (308)
104 1dce_A Protein (RAB geranylger 99.4 4.1E-13 1.4E-17 114.8 8.4 115 67-188 449-567 (567)
105 1xeu_A Internalin C; cellular 99.4 1.5E-12 5.2E-17 100.9 9.9 103 81-192 61-183 (263)
106 1xeu_A Internalin C; cellular 99.4 1.2E-12 4.2E-17 101.4 9.2 82 83-172 106-187 (263)
107 3o53_A Protein LRIM1, AGAP0063 99.4 5.6E-13 1.9E-17 105.8 7.3 108 82-194 119-227 (317)
108 1h6u_A Internalin H; cell adhe 99.4 1.5E-12 5.2E-17 103.1 9.5 105 79-193 103-207 (308)
109 1h6t_A Internalin B; cell adhe 99.4 2E-12 6.9E-17 101.6 10.1 106 79-194 64-169 (291)
110 1m9s_A Internalin B; cell inva 99.4 1.7E-12 5.8E-17 111.8 10.1 103 81-193 85-187 (605)
111 4fmz_A Internalin; leucine ric 99.4 1.9E-12 6.4E-17 103.6 8.7 107 80-194 218-324 (347)
112 1m9s_A Internalin B; cell inva 99.3 2.9E-12 9.9E-17 110.3 9.2 106 78-193 104-209 (605)
113 2r9u_A Variable lymphocyte rec 99.3 6.3E-12 2.2E-16 91.6 9.5 87 83-171 33-119 (174)
114 3cvr_A Invasion plasmid antige 99.3 8.7E-12 3E-16 106.6 9.2 95 85-194 142-243 (571)
115 1o6v_A Internalin A; bacterial 99.3 1.4E-11 4.6E-16 102.7 10.0 102 82-193 264-365 (466)
116 3cvr_A Invasion plasmid antige 99.3 4.3E-12 1.5E-16 108.5 6.8 74 107-193 99-172 (571)
117 1ds9_A Outer arm dynein; leuci 99.3 2.2E-14 7.4E-19 106.6 -6.6 107 79-193 44-152 (198)
118 1o6v_A Internalin A; bacterial 99.3 7.8E-12 2.7E-16 104.1 8.0 105 79-193 283-387 (466)
119 1ds9_A Outer arm dynein; leuci 99.3 3.7E-14 1.3E-18 105.3 -5.5 86 103-194 43-128 (198)
120 3bz5_A Internalin-J, INLJ; leu 99.2 1.2E-11 3.9E-16 103.2 7.4 109 68-192 51-159 (457)
121 3bz5_A Internalin-J, INLJ; leu 99.2 6.1E-11 2.1E-15 98.8 11.2 79 105-193 167-245 (457)
122 2ast_B S-phase kinase-associat 99.2 1.4E-12 4.7E-17 103.9 1.0 109 81-191 91-205 (336)
123 4ay9_X Follicle-stimulating ho 99.2 1.6E-11 5.3E-16 98.8 7.1 120 67-188 7-135 (350)
124 2ast_B S-phase kinase-associat 99.2 2.9E-12 1E-16 101.9 1.6 109 83-194 70-182 (336)
125 2ca6_A RAN GTPase-activating p 99.2 3.2E-12 1.1E-16 103.9 1.0 110 84-194 188-316 (386)
126 2ifg_A High affinity nerve gro 99.2 5.3E-11 1.8E-15 95.3 8.0 90 79-171 27-117 (347)
127 3g06_A SSPH2 (leucine-rich rep 99.2 1.4E-10 4.6E-15 100.2 10.7 77 108-194 221-297 (622)
128 3goz_A Leucine-rich repeat-con 99.1 5.8E-12 2E-16 101.7 1.3 125 67-193 30-179 (362)
129 1jl5_A Outer protein YOPM; leu 99.1 2.1E-10 7.2E-15 95.5 10.6 98 84-193 132-249 (454)
130 4ay9_X Follicle-stimulating ho 99.1 7.7E-11 2.6E-15 94.7 7.2 102 88-194 14-117 (350)
131 3goz_A Leucine-rich repeat-con 99.1 1.6E-11 5.4E-16 99.1 3.1 112 81-194 20-151 (362)
132 2ca6_A RAN GTPase-activating p 99.1 1.9E-11 6.4E-16 99.4 1.7 111 81-193 92-228 (386)
133 3g06_A SSPH2 (leucine-rich rep 99.1 5.9E-11 2E-15 102.5 4.3 94 83-194 61-154 (622)
134 1jl5_A Outer protein YOPM; leu 99.1 4.2E-10 1.5E-14 93.6 9.4 98 83-194 111-208 (454)
135 1z7x_W Ribonuclease inhibitor; 99.0 2.6E-11 9E-16 100.3 -1.7 86 108-194 313-411 (461)
136 1z7x_W Ribonuclease inhibitor; 98.9 9.4E-11 3.2E-15 97.0 -1.6 109 83-193 256-382 (461)
137 3rw6_A Nuclear RNA export fact 98.8 2.1E-10 7.2E-15 89.0 -0.7 79 106-187 168-257 (267)
138 3un9_A NLR family member X1; l 98.8 6.7E-10 2.3E-14 90.2 0.5 110 83-194 126-252 (372)
139 3rw6_A Nuclear RNA export fact 98.7 8.1E-09 2.8E-13 80.1 4.8 87 104-194 137-233 (267)
140 3sb4_A Hypothetical leucine ri 98.7 3.5E-08 1.2E-12 78.4 7.7 103 82-188 225-328 (329)
141 3un9_A NLR family member X1; l 98.7 1.5E-09 5.1E-14 88.2 -1.3 111 83-194 101-224 (372)
142 3sb4_A Hypothetical leucine ri 98.6 2.2E-07 7.4E-12 73.8 8.7 84 107-193 225-309 (329)
143 3ogk_B Coronatine-insensitive 98.5 7.8E-09 2.7E-13 88.0 -1.1 91 104-194 432-526 (592)
144 1io0_A Tropomodulin; LRR prote 98.5 1.8E-08 6.2E-13 73.9 0.1 110 82-193 35-163 (185)
145 3ogk_B Coronatine-insensitive 98.5 3.3E-08 1.1E-12 84.1 1.6 57 106-164 190-250 (592)
146 1io0_A Tropomodulin; LRR prote 98.1 1.1E-06 3.7E-11 64.3 2.9 93 102-194 30-136 (185)
147 2ra8_A Uncharacterized protein 98.1 5.6E-07 1.9E-11 72.8 0.9 89 106-194 217-320 (362)
148 2p1m_B Transport inhibitor res 98.1 1.7E-07 5.8E-12 79.7 -2.5 62 132-193 455-518 (594)
149 2p1m_B Transport inhibitor res 98.0 5.7E-07 2E-11 76.4 -0.2 107 84-191 106-221 (594)
150 4fdw_A Leucine rich hypothetic 98.0 2.9E-05 1E-09 63.4 8.7 96 93-193 257-357 (401)
151 3e4g_A ATP synthase subunit S, 98.0 5.2E-06 1.8E-10 60.2 3.6 83 84-167 62-149 (176)
152 4fdw_A Leucine rich hypothetic 97.7 0.00015 5.3E-09 59.1 9.2 108 78-189 175-308 (401)
153 3e4g_A ATP synthase subunit S, 97.6 2.3E-05 7.8E-10 56.8 2.2 84 108-192 61-150 (176)
154 3rfe_A Platelet glycoprotein I 97.5 0.0001 3.6E-09 50.6 4.9 57 111-170 11-68 (130)
155 2ra8_A Uncharacterized protein 97.5 2.7E-05 9.4E-10 62.8 2.0 38 156-193 251-291 (362)
156 3rfe_A Platelet glycoprotein I 97.2 0.00078 2.7E-08 46.2 6.1 54 89-146 14-68 (130)
157 4h09_A Hypothetical leucine ri 97.0 0.0037 1.3E-07 50.0 8.9 90 98-190 253-342 (379)
158 4gt6_A Cell surface protein; l 97.0 0.0021 7.1E-08 52.0 7.4 89 99-191 279-367 (394)
159 4gt6_A Cell surface protein; l 96.8 0.0067 2.3E-07 48.9 9.2 93 94-193 298-390 (394)
160 4fs7_A Uncharacterized protein 96.8 0.0044 1.5E-07 50.0 7.7 88 100-191 289-376 (394)
161 4fs7_A Uncharacterized protein 96.6 0.0038 1.3E-07 50.4 6.4 86 95-186 308-393 (394)
162 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0025 8.6E-08 46.9 2.9 107 84-192 42-168 (197)
163 4h09_A Hypothetical leucine ri 95.8 0.04 1.4E-06 44.0 8.5 90 99-191 231-320 (379)
164 1pgv_A TMD-1, tropomodulin TMD 95.3 0.0096 3.3E-07 43.7 2.7 88 104-191 37-136 (197)
165 2lz0_A Uncharacterized protein 74.9 6.6 0.00023 25.0 5.1 50 92-144 5-54 (100)
166 2lz0_A Uncharacterized protein 46.5 52 0.0018 20.6 5.8 47 120-167 7-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.1e-25 Score=179.35 Aligned_cols=154 Identities=27% Similarity=0.419 Sum_probs=125.6
Q ss_pred cCCCCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCcc--cccceeCCCCCeeeeeeeeccCCcccc--ccCccccCCCCC
Q 046655 34 AAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCK--WTGVSCNSAGSVIGVSLLWYENDNITG--ELGRFKFSCFPN 109 (194)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~--~~gv~c~~~~~~~~l~~l~l~~n~l~~--~lp~~~~~~l~~ 109 (194)
+.+.|.+||++||+++.++. .+.+| ..+.++|. |.||.|+......+++.+++++|++.+ .+| ..+..+++
T Consensus 3 c~~~~~~aL~~~k~~~~~~~-~l~~W---~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~-~~l~~l~~ 77 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPY 77 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCG-GGTTC---CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGGGCTT
T ss_pred CCHHHHHHHHHHHHhcCCcc-cccCC---CCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC-hhHhCCCC
Confidence 34557889999999997654 67899 45678998 999999864322345556678888888 788 68888889
Q ss_pred ccEEEecC-CCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEec
Q 046655 110 LKSFKIHS-NYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNL 188 (194)
Q Consensus 110 L~~L~l~~-n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~l 188 (194)
|++|++++ | .+.+.+|..|..+++|++|++++|++.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus 78 L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 78 LNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp CSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 99999985 7 788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCcC
Q 046655 189 SSNDL 193 (194)
Q Consensus 189 s~N~l 193 (194)
++|++
T Consensus 157 ~~N~l 161 (313)
T 1ogq_A 157 DGNRI 161 (313)
T ss_dssp CSSCC
T ss_pred cCCcc
Confidence 88876
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=2.1e-22 Score=174.30 Aligned_cols=151 Identities=19% Similarity=0.279 Sum_probs=127.9
Q ss_pred CCCchhHHHHHHHhhcCCCC--------CCCCCCCCCCCCCccc---ccceeCCCCCeeeeeeeeccCCccccccCcccc
Q 046655 36 GLLSSPKLLEREALLATGWW--------VNNWATGNYTSYHCKW---TGVSCNSAGSVIGVSLLWYENDNITGELGRFKF 104 (194)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~~--------~~~w~~~~~~~~~c~~---~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~ 104 (194)
..|+.||.+++.++.++.+. ..+| ..+.++|.| .||.|+..++|+.|. ++++++.|.+| +.+
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W---~~~~~~c~w~~~~GV~C~~~~~V~~L~---L~~~~l~g~lp-~~l 101 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANW---NFNKELDMWGAQPGVSLNSNGRVTGLS---LEGFGASGRVP-DAI 101 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCC---CCSSCGGGTTCCTTEEECTTCCEEEEE---CTTSCCEEEEC-GGG
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCC---CCCCCcccccCCCCeEEcCCCCEEEEE---ecCcccCCcCC-hHH
Confidence 45688999999998766533 2369 567899999 999998777777665 49999999999 799
Q ss_pred CCCCCccEEEecCCC-----------------------------------------------------------------
Q 046655 105 SCFPNLKSFKIHSNY----------------------------------------------------------------- 119 (194)
Q Consensus 105 ~~l~~L~~L~l~~n~----------------------------------------------------------------- 119 (194)
+.+++|++|++++|.
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence 999999999998882
Q ss_pred ------------CCcccCCccccCCCCCCEeecCCCccccc-----------------Cchhhc--cCcccceeecccCc
Q 046655 120 ------------LLSGSIPSEIAAVSMLQTLELPSSSLTGI-----------------IPLEMG--RLRNLVHLDLSDNY 168 (194)
Q Consensus 120 ------------~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~N~ 168 (194)
.++| +|..++++++|++|+|++|++++. +|..++ ++++|++|++++|+
T Consensus 182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 2334 788899999999999999999985 899988 99999999999999
Q ss_pred cCCCCccccCCCCCCCeEeccCCc-CC
Q 046655 169 LSGYIPPTLGRLSKLEILNLSSND-LY 194 (194)
Q Consensus 169 l~g~~p~~~~~l~~L~~L~ls~N~-ls 194 (194)
+.|.+|..++++++|++|++++|+ ++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCc
Confidence 999999999999999999999997 53
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=4.9e-22 Score=175.28 Aligned_cols=147 Identities=20% Similarity=0.290 Sum_probs=89.8
Q ss_pred CCCCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCcccccceeCCCCCeeeeeeeeccCCccccc---cCccccCCCCCcc
Q 046655 35 AGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGE---LGRFKFSCFPNLK 111 (194)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~---lp~~~~~~l~~L~ 111 (194)
.+.|++||++||+++.++. .+++| ..+.++|+|.||+|+ .++|+.| +++++.+.|. ++ +.+..+++|+
T Consensus 10 ~~~~~~all~~k~~~~~~~-~l~~W---~~~~~~C~w~gv~C~-~~~v~~L---~L~~~~l~g~~~~l~-~~l~~L~~L~ 80 (768)
T 3rgz_A 10 LYREIHQLISFKDVLPDKN-LLPDW---SSNKNPCTFDGVTCR-DDKVTSI---DLSSKPLNVGFSAVS-SSLLSLTGLE 80 (768)
T ss_dssp HHHHHHHHHHHHTTCSCTT-SSTTC---CTTSCGGGSTTEEEE-TTEEEEE---ECTTSCCCEEHHHHH-HHTTTCTTCC
T ss_pred CHHHHHHHHHHHhhCCCcc-cccCC---CCCCCCcCCcceEEC-CCcEEEE---ECCCCCcCCccCccC-hhHhccCccc
Confidence 3557889999999998776 78999 467799999999998 4666655 4577777766 55 4455555555
Q ss_pred EEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCch--hhccCcccceeecccCccCCCCcccc-CCCCCCCeEec
Q 046655 112 SFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL--EMGRLRNLVHLDLSDNYLSGYIPPTL-GRLSKLEILNL 188 (194)
Q Consensus 112 ~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~g~~p~~~-~~l~~L~~L~l 188 (194)
.++++.+ .+. .+|..++.+++|++|+|++|.+.|.+|. .++.+++|++|++++|.+++..|..+ .++++|++|++
T Consensus 81 ~l~~~~~-~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 81 SLFLSNS-HIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp EEECTTS-CEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred ccCCcCC-CcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 5555554 332 2334455555555555555555554554 45555555555555555554444433 44455555555
Q ss_pred cCCc
Q 046655 189 SSND 192 (194)
Q Consensus 189 s~N~ 192 (194)
++|.
T Consensus 159 s~n~ 162 (768)
T 3rgz_A 159 SANS 162 (768)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 5444
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=1.5e-21 Score=173.84 Aligned_cols=150 Identities=21% Similarity=0.240 Sum_probs=122.5
Q ss_pred CCCCchhHHHHHHHhhcCCCCCCCCCCCC--CCCCC--ccc------------ccceeCCCCCeeeeeeeeccCCccccc
Q 046655 35 AGLLSSPKLLEREALLATGWWVNNWATGN--YTSYH--CKW------------TGVSCNSAGSVIGVSLLWYENDNITGE 98 (194)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~--~~~~~--c~~------------~gv~c~~~~~~~~l~~l~l~~n~l~~~ 98 (194)
...|..||++||+++.++ +|.... ...++ |.| .||.|+..++|+.|. |+++++.|.
T Consensus 267 ~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~---Ls~~~L~G~ 338 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLS---LAGFGAKGR 338 (876)
T ss_dssp HHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEE---CTTTCCEEE
T ss_pred chHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEE---CccCCCCCc
Confidence 345788999999999655 573111 12355 999 999999767777665 489999999
Q ss_pred cCccccCCCCCccEEEe-cCCCCCccc-----------------------------------------------------
Q 046655 99 LGRFKFSCFPNLKSFKI-HSNYLLSGS----------------------------------------------------- 124 (194)
Q Consensus 99 lp~~~~~~l~~L~~L~l-~~n~~l~~~----------------------------------------------------- 124 (194)
+| +.++.+++|++|++ ++| .++|.
T Consensus 339 ip-~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 339 VP-DAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EC-GGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred Cc-hHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 99 78999999999999 666 44433
Q ss_pred -----------------------CCccccCCCCCCEeecCCCcccc-----------------cCchhhc--cCccccee
Q 046655 125 -----------------------IPSEIAAVSMLQTLELPSSSLTG-----------------IIPLEMG--RLRNLVHL 162 (194)
Q Consensus 125 -----------------------~p~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L 162 (194)
+|..++++++|+.|+|++|++++ .+|..++ ++++|++|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 78888899999999999999997 3888877 99999999
Q ss_pred ecccCccCCCCccccCCCCCCCeEeccCCc-CC
Q 046655 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSND-LY 194 (194)
Q Consensus 163 ~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~-ls 194 (194)
++++|++.|.+|..++++++|++|++++|+ ++
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred ECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 999999999999999999999999999997 53
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=4.9e-21 Score=153.43 Aligned_cols=157 Identities=18% Similarity=0.266 Sum_probs=84.5
Q ss_pred hccCCCCchhHHHHHHHhhcCC-CCCCCCC-CCCCCCCCcccccceeCC---------CCCeee----------------
Q 046655 32 ASAAGLLSSPKLLEREALLATG-WWVNNWA-TGNYTSYHCKWTGVSCNS---------AGSVIG---------------- 84 (194)
Q Consensus 32 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~w~-~~~~~~~~c~~~gv~c~~---------~~~~~~---------------- 84 (194)
.....++..+|.+||..+..++ .+...|. ......++|.|.|+.|.. ..+++.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~ 101 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAF 101 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChhhh
Confidence 3445566889999999885444 5556772 012357899999999952 123322
Q ss_pred ----eeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhcc-----
Q 046655 85 ----VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGR----- 155 (194)
Q Consensus 85 ----l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~----- 155 (194)
|+.+++++|++. .+| ..+..+++|++|++++| .++ .+|..+..+++|++|++++|++.+.+|..+..
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~Ls~n-~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARN-PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCC-SCGGGGTTCSEEEEESC-CCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hCCCCCEEECCCCCcc-chh-HHHhccCCCCEEECCCC-ccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 223444444444 444 34444444455555444 444 34444444555555555554444444444332
Q ss_pred ----CcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 156 ----LRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 156 ----l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+++|++|++++|+++ .+|..++++++|++|++++|.+
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 455555555555555 4555555555666666665554
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.1e-18 Score=133.01 Aligned_cols=128 Identities=27% Similarity=0.342 Sum_probs=86.7
Q ss_pred CCCCCCcccccceeCCC-------CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCC
Q 046655 63 NYTSYHCKWTGVSCNSA-------GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSML 135 (194)
Q Consensus 63 ~~~~~~c~~~gv~c~~~-------~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L 135 (194)
..+...|+|.+|.|... +-...++.+++++|++.+..| ..+..+++|++|++++| .+....+..|..+++|
T Consensus 13 ~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 13 CPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSN-QLGALPVGVFDSLTQL 90 (229)
T ss_dssp CCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCC-CCCCcChhhcccCCCc
Confidence 35788999999999731 122445667778888774444 56777777777777777 6664444556677777
Q ss_pred CEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 136 QTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 136 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
++|+|++|++++..+..|..+++|+.|++++|+++ .+|..+..+++|++|++++|+|
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence 77777777777544445666777777777777776 5666666666666666666655
No 7
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=3.2e-18 Score=127.02 Aligned_cols=128 Identities=26% Similarity=0.401 Sum_probs=109.6
Q ss_pred CCCCcccccceeCCC--CC-----eeeeeeeeccCCccccccCcc-ccCCCCCccEEEecCCCCCcccCCccccCCCCCC
Q 046655 65 TSYHCKWTGVSCNSA--GS-----VIGVSLLWYENDNITGELGRF-KFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQ 136 (194)
Q Consensus 65 ~~~~c~~~gv~c~~~--~~-----~~~l~~l~l~~n~l~~~lp~~-~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~ 136 (194)
....|.|..+.|... .. ...++.+++++|++. .++.. .+..+++|++|++++| .+++..|..|..+++|+
T Consensus 4 ~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCC
T ss_pred CCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCC
Confidence 345578888888631 11 125667899999999 55523 4889999999999999 99988899999999999
Q ss_pred EeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 137 TLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 137 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+|+|++|++++..|..|.++++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999999999888888999999999999999999988999999999999999999874
No 8
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.75 E-value=1.3e-17 Score=121.93 Aligned_cols=127 Identities=21% Similarity=0.262 Sum_probs=105.8
Q ss_pred CCCcccccceeCCC-------CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEe
Q 046655 66 SYHCKWTGVSCNSA-------GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTL 138 (194)
Q Consensus 66 ~~~c~~~gv~c~~~-------~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L 138 (194)
...|.|.++.|... +....++.+++++|++. .++...+..+++|++|++++| .+++..+..+..+++|++|
T Consensus 4 ~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEE
Confidence 44688999999731 12346777999999999 666466889999999999999 8887666668999999999
Q ss_pred ecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 139 ELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 139 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 99999999666666889999999999999999655555788999999999999874
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.6e-17 Score=124.32 Aligned_cols=125 Identities=23% Similarity=0.291 Sum_probs=61.2
Q ss_pred CCcccccceeCCCC-------CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEee
Q 046655 67 YHCKWTGVSCNSAG-------SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLE 139 (194)
Q Consensus 67 ~~c~~~gv~c~~~~-------~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~ 139 (194)
..|.|.++.|...+ ....++.+++++|+++ .++...+..+++|++|++++| .+++..+..|..+++|++|+
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEE
Confidence 34566666664211 1123444555555555 333234455555555555555 45533333345555555555
Q ss_pred cCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 140 LPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 140 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 555555533333344555555555555555533333344555555555555543
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.6e-17 Score=125.84 Aligned_cols=114 Identities=20% Similarity=0.182 Sum_probs=60.0
Q ss_pred CCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc
Q 046655 78 SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR 157 (194)
Q Consensus 78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 157 (194)
.+..+..|+.+++++|++.+..| ..|..+++|++|++++| .++...+..|..+++|++|+|++|++.+..|..|..++
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 128 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH 128 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC
Confidence 34444445555555555552223 45555555555555555 55533333345555555555555555544455555555
Q ss_pred ccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 158 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+|+.|++++|++++..+..|..+++|+.|++++|++
T Consensus 129 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 555555555555544444455555566666655554
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=126.85 Aligned_cols=113 Identities=22% Similarity=0.245 Sum_probs=89.3
Q ss_pred CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655 79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN 158 (194)
Q Consensus 79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 158 (194)
+..++.|+.+++++|+++ .++...|..+++|++|++++| .+++..+..|..+++|++|+|++|++.+..|..|..+++
T Consensus 53 ~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp GGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred hccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 456667777888888888 555357788888888888888 777666666788888888888888888777777888888
Q ss_pred cceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
|+.|++++|++++..|..|..+++|+.|++++|++
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 88888888888877777888888888888888875
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=4.4e-18 Score=150.08 Aligned_cols=88 Identities=39% Similarity=0.564 Sum_probs=77.8
Q ss_pred CCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCe
Q 046655 106 CFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEI 185 (194)
Q Consensus 106 ~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~ 185 (194)
.++.|++||+++| .++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.||+++|+++|.+|..+..+++|++
T Consensus 630 ~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 630 NNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred ccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 3567888899998 888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcCC
Q 046655 186 LNLSSNDLY 194 (194)
Q Consensus 186 L~ls~N~ls 194 (194)
|++++|+++
T Consensus 709 L~ls~N~l~ 717 (768)
T 3rgz_A 709 IDLSNNNLS 717 (768)
T ss_dssp EECCSSEEE
T ss_pred EECcCCccc
Confidence 999998763
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2.8e-17 Score=124.50 Aligned_cols=130 Identities=19% Similarity=0.222 Sum_probs=108.9
Q ss_pred CCCCCcccccceeCCC--CCe-----eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCC
Q 046655 64 YTSYHCKWTGVSCNSA--GSV-----IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQ 136 (194)
Q Consensus 64 ~~~~~c~~~gv~c~~~--~~~-----~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~ 136 (194)
+....|.|..+.|... ..+ ..++.+++++|++++..+...+..+++|++|++++| .+++..+..|..+++|+
T Consensus 6 P~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 6 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVN 84 (220)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCC
Confidence 3445678888888631 111 234568899999994445345889999999999999 89987777899999999
Q ss_pred EeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 137 TLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 137 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+|+|++|++++..|..|..+++|++|++++|++++..|..|..+++|++|++++|+|+
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 9999999999777778999999999999999999888999999999999999999874
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=122.48 Aligned_cols=126 Identities=25% Similarity=0.304 Sum_probs=107.0
Q ss_pred CCCCcccccceeCCC-------CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCE
Q 046655 65 TSYHCKWTGVSCNSA-------GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQT 137 (194)
Q Consensus 65 ~~~~c~~~gv~c~~~-------~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~ 137 (194)
....|.+..+.|... +-...++.+++++|+++ .+| ..+..+++|++|++++| .+++..+..|..+++|++
T Consensus 6 ~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 6 TECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCE
Confidence 344566777777521 11235667899999999 999 78999999999999999 899877788999999999
Q ss_pred eecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 138 LELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 138 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
|+|++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 99999999987777899999999999999999965555689999999999999986
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=2.3e-17 Score=125.00 Aligned_cols=129 Identities=21% Similarity=0.271 Sum_probs=109.6
Q ss_pred CCCCCcccccceeCCCC--C-----eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCC
Q 046655 64 YTSYHCKWTGVSCNSAG--S-----VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQ 136 (194)
Q Consensus 64 ~~~~~c~~~gv~c~~~~--~-----~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~ 136 (194)
+....|.|..+.|...+ . -..++.+++++|++. .++...|..+++|++|++++| .+++..|..|..+++|+
T Consensus 6 P~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 6 PAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLN 83 (220)
T ss_dssp CTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCC
T ss_pred CCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCC
Confidence 34456788888886311 1 135677899999999 666468999999999999999 89988899999999999
Q ss_pred EeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 137 TLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 137 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+|+|++|+++...+..|.++++|+.|++++|++++..|..|..+++|++|++++|+|+
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 9999999999544455789999999999999999888889999999999999999874
No 16
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=4.5e-17 Score=124.05 Aligned_cols=125 Identities=22% Similarity=0.236 Sum_probs=110.5
Q ss_pred CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
..+...++....+..+..|+.+++++|++. .++...|..+++|++|++++| .+++..+..|..+++|++|++++|+++
T Consensus 48 s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 48 HDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCCccc
Confidence 456677776777788899999999999998 777566889999999999999 898766677899999999999999999
Q ss_pred ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
.+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++
T Consensus 126 -~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 126 -ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp -SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred -ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 88999999999999999999999665567999999999999999874
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=6e-17 Score=126.01 Aligned_cols=105 Identities=23% Similarity=0.278 Sum_probs=50.1
Q ss_pred eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecc
Q 046655 86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS 165 (194)
Q Consensus 86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 165 (194)
+.+++++|++. .++...+..+++|++|++++| .++...+..|..+++|++|++++|++.+..+..|..+++|++|+++
T Consensus 40 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 40 KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp SEEECCSSCCS-CCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CEEECcCCCCC-eeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 33555555555 333234555555555555555 4443333333445555555555555553333334444455555555
Q ss_pred cCccCCCCccccCCCCCCCeEeccCCc
Q 046655 166 DNYLSGYIPPTLGRLSKLEILNLSSND 192 (194)
Q Consensus 166 ~N~l~g~~p~~~~~l~~L~~L~ls~N~ 192 (194)
+|++++..+..|..+++|++|++++|.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCc
Confidence 555443333334444444444444443
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=9.5e-17 Score=123.61 Aligned_cols=122 Identities=22% Similarity=0.272 Sum_probs=77.2
Q ss_pred ccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccC
Q 046655 70 KWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGII 149 (194)
Q Consensus 70 ~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 149 (194)
.+.++....+..+..|+.+++++|+++ .++...+..+++|++|++++| .+++..+..|..+++|++|+|++|++++..
T Consensus 70 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 70 QLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 344444444455666666666666666 444345566666777777777 666544444566777777777777776444
Q ss_pred chhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 150 PLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 150 p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+..|..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 44566777777777777777755555666777777777777765
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=1.1e-16 Score=123.36 Aligned_cols=126 Identities=19% Similarity=0.210 Sum_probs=105.9
Q ss_pred CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
..+...++....+..+.+|+.+++++|++.+..+ ..+..+++|++|++++| .+++..+..|..+++|++|++++|+++
T Consensus 43 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 43 QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-hHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCCcCC
Confidence 4455666666667788899999999999995444 67889999999999999 888776777889999999999999999
Q ss_pred ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+..+..|..+++|+.|++++|++++..+..|..+++|++|++++|+++
T Consensus 121 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 665566789999999999999999666667999999999999999874
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.70 E-value=7.8e-18 Score=133.86 Aligned_cols=116 Identities=26% Similarity=0.443 Sum_probs=103.3
Q ss_pred eCCCCCeeeeeeeeccC-CccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhc
Q 046655 76 CNSAGSVIGVSLLWYEN-DNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMG 154 (194)
Q Consensus 76 c~~~~~~~~l~~l~l~~-n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 154 (194)
....+.++.|+.+++++ |++.+.+| ..+..+++|++|++++| .+++.+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 33456677888899995 99998888 78999999999999999 88888999999999999999999999989999999
Q ss_pred cCcccceeecccCccCCCCccccCCCC-CCCeEeccCCcC
Q 046655 155 RLRNLVHLDLSDNYLSGYIPPTLGRLS-KLEILNLSSNDL 193 (194)
Q Consensus 155 ~l~~L~~L~L~~N~l~g~~p~~~~~l~-~L~~L~ls~N~l 193 (194)
.+++|++|++++|+++|.+|..+..++ +|++|++++|.+
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 999999999999999988999999988 899999999875
No 21
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=2e-16 Score=118.35 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=106.6
Q ss_pred CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
..+...++....++.+..|+.+++++|+++ .++...+..+++|++|++++| .+++..+..+..+++|++|++++|+++
T Consensus 36 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 36 ETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQLQ 113 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCCcCc
Confidence 344555555555678889999999999999 666466789999999999999 888766666899999999999999999
Q ss_pred ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 666666899999999999999999766666899999999999999763
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=2.8e-16 Score=122.40 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=81.0
Q ss_pred ccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccC
Q 046655 70 KWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGII 149 (194)
Q Consensus 70 ~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 149 (194)
.+.++....++.+..|+.+++++|++. .++...+..+++|++|++++| .+++..+..+..+++|++|++++|++++..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 344444444456666666777777777 444245666777777777777 666555555667777777777777777555
Q ss_pred chhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 150 PLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 150 p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+..+..+++|+.|++++|++++..|..+..+++|++|++++|++
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 55567777777777777777765555567777777777777765
No 23
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.67 E-value=4.4e-16 Score=113.38 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=86.9
Q ss_pred eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccC
Q 046655 88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167 (194)
Q Consensus 88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 167 (194)
+++++|+++ .+| ..+ .+.+++|++++| .+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 14 l~~s~n~l~-~ip-~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 14 VDCSGKSLA-SVP-TGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EECTTSCCS-SCC-SCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCcC-ccC-ccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455777777 788 444 378999999999 899877888999999999999999999666666889999999999999
Q ss_pred ccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 168 YLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 168 ~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++++..+..|..+++|++|++++|+++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 999765666999999999999999874
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=4.8e-16 Score=133.02 Aligned_cols=108 Identities=20% Similarity=0.272 Sum_probs=83.4
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 163 (194)
.++.|++++|+|+ .++...|..+++|++|++++| .+++..+..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 4566888888888 666567888888888888888 77766666788888888888888888865556678888888888
Q ss_pred cccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 164 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+++|++++..+..|+++++|++|++++|.+
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 888888865555677888888888888765
No 25
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=3.5e-16 Score=111.04 Aligned_cols=107 Identities=23% Similarity=0.299 Sum_probs=55.6
Q ss_pred eeeeeeeccCCccc-cccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655 83 IGVSLLWYENDNIT-GELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161 (194)
Q Consensus 83 ~~l~~l~l~~n~l~-~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 161 (194)
..++.+++++|++. +.+| ..+..+++|++|++++| .+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 33444455555555 4555 34455555555555555 44432 44555555555555555555445555555555555
Q ss_pred eecccCccCCC-CccccCCCCCCCeEeccCCcC
Q 046655 162 LDLSDNYLSGY-IPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 162 L~L~~N~l~g~-~p~~~~~l~~L~~L~ls~N~l 193 (194)
|++++|++++. .+..+..+++|++|++++|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 55555555531 224455555555555555544
No 26
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.65 E-value=8.7e-16 Score=112.28 Aligned_cols=104 Identities=22% Similarity=0.249 Sum_probs=88.9
Q ss_pred eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecc
Q 046655 86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS 165 (194)
Q Consensus 86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 165 (194)
..+++++|++. .+| ..+. +.|++|++++| .+++..|..|..+++|++|+|++|++++..+..|..+++|+.|+++
T Consensus 15 ~~l~~~~n~l~-~iP-~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVP-AGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCC-SCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccC-CCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 34667888887 888 4443 88999999999 8998888899999999999999999996544557899999999999
Q ss_pred cCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 166 DNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 166 ~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+|++++..+..|..+++|++|++++|+++
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 99999654455999999999999999874
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.65 E-value=5.9e-16 Score=128.20 Aligned_cols=124 Identities=18% Similarity=0.159 Sum_probs=104.7
Q ss_pred cccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc
Q 046655 69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI 148 (194)
Q Consensus 69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 148 (194)
|...++.....+.+++|+.+++++|++.+..| ..+..+++|++|++++| .+.+..|..+..+++|++|++++|++++.
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDD-NAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRAL 362 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEE
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccCh-hHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCccccc
Confidence 44455555566778888889999999995555 78889999999999999 88877788889999999999999999988
Q ss_pred CchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 149 IPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 149 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
.|..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 363 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 8888999999999999999999655556789999999999999874
No 28
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.4e-15 Score=118.29 Aligned_cols=112 Identities=22% Similarity=0.329 Sum_probs=64.0
Q ss_pred CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655 80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL 159 (194)
Q Consensus 80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 159 (194)
..+..|+.+++++|++. .++...+..+++|++|++++| .+++..+..|..+++|++|++++|++.+..+..|..+++|
T Consensus 82 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp SSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 34445555555555555 343234455555666666665 5554444445566666666666666664333345666666
Q ss_pred ceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+.|++++|++++..+..|.++++|++|++++|++
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 6666666666654444466666666666666655
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=7.2e-16 Score=120.59 Aligned_cols=115 Identities=22% Similarity=0.279 Sum_probs=69.3
Q ss_pred CCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccC
Q 046655 77 NSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRL 156 (194)
Q Consensus 77 ~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 156 (194)
.....+++|+.+++++|++. .++...+..+++|++|++++| .+++..+..+..+++|++|++++|++.+..|..+..+
T Consensus 123 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 123 GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred hHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence 33445555555666666665 343244556666666666666 5554444446666666666666666665556666666
Q ss_pred cccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 157 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
++|+.|++++|++++..+..+..+++|++|++++|++
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 6666666666666654444566666666666666654
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=8.7e-16 Score=131.42 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=106.7
Q ss_pred ccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccC
Q 046655 70 KWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGII 149 (194)
Q Consensus 70 ~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 149 (194)
...++..........++.+++++|++...+++..+..+++|++|++++| .+++..|..|.++++|++|+|++|++++..
T Consensus 456 ~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~ 534 (635)
T 4g8a_A 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 534 (635)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence 3444444455677788889999998664443378899999999999999 999888999999999999999999999888
Q ss_pred chhhccCcccceeecccCccCCCCccccCCC-CCCCeEeccCCcCC
Q 046655 150 PLEMGRLRNLVHLDLSDNYLSGYIPPTLGRL-SKLEILNLSSNDLY 194 (194)
Q Consensus 150 p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l-~~L~~L~ls~N~ls 194 (194)
|..|.++++|++|++++|++++..|..+..+ ++|++|++++|+++
T Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 8889999999999999999999888889888 68999999999874
No 31
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=1.4e-15 Score=118.49 Aligned_cols=115 Identities=23% Similarity=0.278 Sum_probs=96.4
Q ss_pred CCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc
Q 046655 78 SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR 157 (194)
Q Consensus 78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 157 (194)
..+.+++|+.+++++|+++ .++...+..+++|++|++++| .+++..+..+..+++|++|++++|++++..+..+..++
T Consensus 80 ~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 157 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157 (272)
T ss_dssp GGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc
Confidence 3566778888899999998 555366788999999999999 88876666788899999999999999966666678899
Q ss_pred ccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 158 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+|+.|++++|++++..+..+..+++|++|++++|+++
T Consensus 158 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 9999999999999766666888999999999999874
No 32
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=1.2e-15 Score=118.82 Aligned_cols=126 Identities=20% Similarity=0.272 Sum_probs=94.8
Q ss_pred CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
..+...++....+..+..|+.+++++|++. .++...+..+++|++|++++| .+++..+..|..+++|++|++++|++.
T Consensus 36 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 113 (276)
T 2z62_A 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLA 113 (276)
T ss_dssp TTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCCcc
Confidence 344555555556667777888888888887 555356778888888888888 777766677888888888888888887
Q ss_pred ccCchhhccCcccceeecccCccCC-CCccccCCCCCCCeEeccCCcCC
Q 046655 147 GIIPLEMGRLRNLVHLDLSDNYLSG-YIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 147 ~~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+..+..+..+++|++|++++|++++ .+|..+..+++|++|++++|+++
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 6555567788888888888888875 35778888888888888888763
No 33
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=1.3e-15 Score=123.29 Aligned_cols=123 Identities=22% Similarity=0.267 Sum_probs=86.3
Q ss_pred cccccceeCCCC-CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccc
Q 046655 69 CKWTGVSCNSAG-SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG 147 (194)
Q Consensus 69 c~~~gv~c~~~~-~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 147 (194)
+...++....+. .+.+|+.|++++|+++ .++...|..+++|++|++++| .+++..+..|..+++|++|+|++|++.+
T Consensus 49 N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 49 NNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp SCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence 344444444444 6677777777777777 554356777788888888888 7776656667778888888888888876
Q ss_pred cCchhhccCcccceeecccCccCCCCccc-c---CCCCCCCeEeccCCcCC
Q 046655 148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPT-L---GRLSKLEILNLSSNDLY 194 (194)
Q Consensus 148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~---~~l~~L~~L~ls~N~ls 194 (194)
..|..|.++++|+.|+|++|++++ +|.. | ..+++|++|++++|+|+
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 127 VDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred ECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence 667777788888888888888884 4544 3 46778888888888763
No 34
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=1.5e-15 Score=122.84 Aligned_cols=129 Identities=22% Similarity=0.220 Sum_probs=107.8
Q ss_pred CCCCCcccccceeCCC--CCe-----eeeeeeeccCCccccccCccccC-CCCCccEEEecCCCCCcccCCccccCCCCC
Q 046655 64 YTSYHCKWTGVSCNSA--GSV-----IGVSLLWYENDNITGELGRFKFS-CFPNLKSFKIHSNYLLSGSIPSEIAAVSML 135 (194)
Q Consensus 64 ~~~~~c~~~gv~c~~~--~~~-----~~l~~l~l~~n~l~~~lp~~~~~-~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L 135 (194)
+....|.+..+.|... ..+ ..++.|++++|+++ .++...+. .+++|++|++++| .+++..+..|..+++|
T Consensus 13 p~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L 90 (361)
T 2xot_A 13 PANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNL 90 (361)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred CCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCC
Confidence 3445567777888631 111 23566999999999 66646676 8999999999999 8998777889999999
Q ss_pred CEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 136 QTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 136 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++|+|++|++....+..|..+++|+.|+|++|++++..|..|..+++|++|++++|.|+
T Consensus 91 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 99999999999776777999999999999999999877889999999999999999874
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=2.4e-15 Score=117.58 Aligned_cols=114 Identities=20% Similarity=0.207 Sum_probs=57.3
Q ss_pred CCCCeeeeeeeeccCCc-cccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccC
Q 046655 78 SAGSVIGVSLLWYENDN-ITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRL 156 (194)
Q Consensus 78 ~~~~~~~l~~l~l~~n~-l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 156 (194)
.+..++.|+.+++++|+ +. .++...+..+++|++|++++| .+++..+..+..+++|++|++++|++.+..+..+..+
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 152 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC
Confidence 34444445555555554 33 332244455555555555555 4444444445555555555555555553333335555
Q ss_pred cccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 157 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
++|+.|++++|++++..+..+..+++|++|++++|.+
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 5555555555555533333455555555555555544
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.63 E-value=9.5e-16 Score=126.97 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=92.9
Q ss_pred CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
..+...++.....++++.|+.+++++|.+.+.++...+..+++|++|++++| .+++..|..|.++++|++|++++|++.
T Consensus 38 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 116 (455)
T 3v47_A 38 SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLD 116 (455)
T ss_dssp CSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCB
T ss_pred cCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCC
Confidence 3445555555556677777777777777776665456777888888888888 777667777888888888888888887
Q ss_pred ccCchh--hccCcccceeecccCccCCCCccc-cCCCCCCCeEeccCCcC
Q 046655 147 GIIPLE--MGRLRNLVHLDLSDNYLSGYIPPT-LGRLSKLEILNLSSNDL 193 (194)
Q Consensus 147 ~~~p~~--~~~l~~L~~L~L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~l 193 (194)
+..|.. +..+++|++|++++|++++..|.. +.++++|++|++++|.+
T Consensus 117 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred ccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 655554 777888888888888888666665 67788888888888765
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=1.5e-15 Score=119.80 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=95.6
Q ss_pred cccccceeCCCCCeeeeeeeeccCCcccc-ccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccc
Q 046655 69 CKWTGVSCNSAGSVIGVSLLWYENDNITG-ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG 147 (194)
Q Consensus 69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 147 (194)
|...++.......+..|+.+++++|.+.+ .+| ..+..+++|++|++++| .+++..|..+..+++|++|++++|++.+
T Consensus 136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp SCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CcCCccchhhcccCcCCCEEECCCCccccccch-hHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 33444444455667777788888888875 356 67788888888888888 7877777788888888888888888886
Q ss_pred cCchhhccCcccceeecccCccCCCCccccCCCC-CCCeEeccCCcC
Q 046655 148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLS-KLEILNLSSNDL 193 (194)
Q Consensus 148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~-~L~~L~ls~N~l 193 (194)
..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|++
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 6666788888888888888888887888888874 888888888876
No 38
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=9.4e-16 Score=110.95 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=97.4
Q ss_pred CCcccc-cceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcc
Q 046655 67 YHCKWT-GVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSL 145 (194)
Q Consensus 67 ~~c~~~-gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l 145 (194)
..|... +........+..|+.+++++|.++ .+ ..+..+++|++|++++| .+++.+|..+..+++|++|++++|.+
T Consensus 32 ~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l 107 (168)
T 2ell_A 32 DNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGNKL 107 (168)
T ss_dssp CSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEECBSSSC
T ss_pred CCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEeccCCcc
Confidence 445555 333344567788888999999988 44 36788999999999999 88877787777899999999999999
Q ss_pred ccc-CchhhccCcccceeecccCccCCCCc---cccCCCCCCCeEeccCCcC
Q 046655 146 TGI-IPLEMGRLRNLVHLDLSDNYLSGYIP---PTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 146 ~~~-~p~~~~~l~~L~~L~L~~N~l~g~~p---~~~~~l~~L~~L~ls~N~l 193 (194)
++. .+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 108 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 108 KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 843 22678889999999999999995433 3788999999999998875
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=3.2e-15 Score=117.62 Aligned_cols=111 Identities=23% Similarity=0.263 Sum_probs=65.7
Q ss_pred CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655 80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL 159 (194)
Q Consensus 80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 159 (194)
+.+..|+.+++++|++. .+| ..+..+++|++|++++| .+++..+..|..+++|++|++++|++++..+..|..+++|
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~-~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCC-CCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCcCCEEECCCCcCC-cCc-hhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 34445555666666665 555 45556666666666666 5665444556666666666666666664444445566666
Q ss_pred ceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+.|++++|++++..+..|.++++|++|++++|+|
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 6666666666633333345566666666666654
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.62 E-value=2e-15 Score=129.34 Aligned_cols=126 Identities=16% Similarity=0.222 Sum_probs=104.5
Q ss_pred CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
..+...++....+.+++.|+.+++++|++++..| ..|..+++|++|++++| .+++..|..|+++++|++|++++|++.
T Consensus 40 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~ 117 (606)
T 3vq2_A 40 SFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLA 117 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCC
T ss_pred CCCCcCEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccc
Confidence 4455666666677788888889999999884334 67888999999999999 788777888999999999999999998
Q ss_pred ccCchhhccCcccceeecccCccCC-CCccccCCCCCCCeEeccCCcCC
Q 046655 147 GIIPLEMGRLRNLVHLDLSDNYLSG-YIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 147 ~~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+..|..++++++|++|++++|++++ .+|..++++++|++|++++|.++
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 6666778899999999999999885 57888999999999999998764
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.62 E-value=1.6e-15 Score=128.42 Aligned_cols=122 Identities=19% Similarity=0.243 Sum_probs=97.5
Q ss_pred CcccccceeCCC-C--------CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEe
Q 046655 68 HCKWTGVSCNSA-G--------SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTL 138 (194)
Q Consensus 68 ~c~~~gv~c~~~-~--------~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L 138 (194)
.|.|.|+ |+.. . -...++.+++++|++++..| ..+..+++|++|++++| .+++..|..|..+++|++|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccCh-hhhhcCCcccEEECCCC-CcCccChhhccccccCCEE
Confidence 4777777 6521 1 12356778889999884445 67888999999999999 8888777888999999999
Q ss_pred ecCCCcccccCchhhccCcccceeecccCccCC-CCccccCCCCCCCeEeccCCc
Q 046655 139 ELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSG-YIPPTLGRLSKLEILNLSSND 192 (194)
Q Consensus 139 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~ 192 (194)
++++|++.+..|..|+++++|++|++++|++++ ..|..++++++|++|++++|.
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 999999987766678899999999999999885 356778888889999888886
No 42
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=5.6e-15 Score=109.65 Aligned_cols=103 Identities=20% Similarity=0.331 Sum_probs=92.0
Q ss_pred eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecc
Q 046655 86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS 165 (194)
Q Consensus 86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 165 (194)
..+++++|+++ .+| ..+ .+.+++|++++| .++ .+|..|..+++|++|+|++|.+++..+..|.++++|+.|+++
T Consensus 13 ~~l~~~~~~l~-~ip-~~~--~~~l~~L~L~~n-~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLP-KGI--PRDVTELYLDGN-QFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCC-SCC--CTTCCEEECCSS-CCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCC-CCC--CCCCCEEECCCC-cCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 45778999999 888 444 368999999999 887 688999999999999999999997777789999999999999
Q ss_pred cCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 166 DNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 166 ~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+|++++..|..|..+++|++|++++|+|+
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 99999877778999999999999999874
No 43
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=6.7e-16 Score=133.62 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=111.9
Q ss_pred CcccccceeCCCCCeeeeeeeeccCCccccc-----------------cCccccC--CCCCccEEEecCCCCCcccCCcc
Q 046655 68 HCKWTGVSCNSAGSVIGVSLLWYENDNITGE-----------------LGRFKFS--CFPNLKSFKIHSNYLLSGSIPSE 128 (194)
Q Consensus 68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~-----------------lp~~~~~--~l~~L~~L~l~~n~~l~~~~p~~ 128 (194)
.+.+.| .....++++.|+.+++++|+++|. +| ..+. .+++|++|++++| .+.+.+|..
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n-~l~~~~p~~ 268 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNC-PNLTKLPTF 268 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECC-TTCSSCCTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCC-cCCccChHH
Confidence 567778 455678899999999999999975 99 7888 9999999999999 899999999
Q ss_pred ccCCCCCCEeecCCCc-ccc-cCchhhccC------cccceeecccCccCCCCcc--ccCCCCCCCeEeccCCcCC
Q 046655 129 IAAVSMLQTLELPSSS-LTG-IIPLEMGRL------RNLVHLDLSDNYLSGYIPP--TLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 129 ~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~g~~p~--~~~~l~~L~~L~ls~N~ls 194 (194)
++++++|++|++++|+ ++| .+|..++.+ ++|++|++++|+++ .+|. .++++++|++|++++|.++
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence 9999999999999998 998 899998887 99999999999999 8998 8999999999999999863
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=2.9e-15 Score=120.60 Aligned_cols=105 Identities=22% Similarity=0.264 Sum_probs=71.5
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 163 (194)
.++.+++++|+++ .++...+..+++|++|++++| .+++..+..|..+++|++|++++|++++..+..+.++++|++|+
T Consensus 53 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 4555677777777 455346777777777777777 66666666677777777777777777743333467777777777
Q ss_pred cccCccCCCCcc--ccCCCCCCCeEeccCC
Q 046655 164 LSDNYLSGYIPP--TLGRLSKLEILNLSSN 191 (194)
Q Consensus 164 L~~N~l~g~~p~--~~~~l~~L~~L~ls~N 191 (194)
+++|+++ .+|. .+.++++|++|++++|
T Consensus 131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 131 LLGNPYK-TLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp CTTCCCS-SSCSSCSCTTCTTCCEEEEEES
T ss_pred CCCCCCc-ccCchhhhccCCCCcEEECCCC
Confidence 7777777 3444 5667777777777766
No 45
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=4.2e-15 Score=110.15 Aligned_cols=104 Identities=20% Similarity=0.241 Sum_probs=91.8
Q ss_pred eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCc-cccCCCCCCEeecCCCcccccCchhhccCcccceeec
Q 046655 86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPS-EIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164 (194)
Q Consensus 86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 164 (194)
+.+++++|++. .+| ..+. ..+++|++++| .+++..+. .|..+++|++|+|++|++++..|..|.++++|+.|++
T Consensus 11 ~~l~~s~~~l~-~ip-~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIP-RDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS-SCC-SCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcC-cCc-cCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 45778999997 898 4443 38999999999 88865554 4899999999999999999888999999999999999
Q ss_pred ccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 165 SDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 165 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++|++++..|..|..+++|++|++++|+|+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 999999888888999999999999999874
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.60 E-value=3e-15 Score=118.09 Aligned_cols=115 Identities=19% Similarity=0.224 Sum_probs=89.8
Q ss_pred CCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcc-cCCccccCCCCCCEeecCCCcccccCchhhccC
Q 046655 78 SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSG-SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRL 156 (194)
Q Consensus 78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 156 (194)
....+.+|+.+++++|++.+..+ ..+..+++|++|++++| .+.+ .+|..+..+++|++|++++|++.+..|..+..+
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 198 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECST-TTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhccCCCEEECCCCcCCccch-hhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence 34566777777888888775555 66777888888888888 6665 467778888888888888888887777788888
Q ss_pred cccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 157 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++|+.|++++|++++..+..+..+++|++|++++|+++
T Consensus 199 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 88888888888888665667888888888888888763
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.60 E-value=2.3e-15 Score=120.39 Aligned_cols=108 Identities=27% Similarity=0.282 Sum_probs=79.2
Q ss_pred eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655 82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 161 (194)
++.|+.+++++|+++ .+| ..+..+++|++|++++| .+++ +|..+..+++|++|++++|.+.+.+|..++.+++|+.
T Consensus 182 l~~L~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~N-~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNS-PLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp STTCCEEEEEEECCC-CCC-GGGGGCTTCCEEEEESS-CCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred CCCCCEEECcCCCcC-cch-HhhcCCCCCCEEEccCC-CCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 556666777777777 777 56777777777777777 6664 5666777777777777777777777777777777777
Q ss_pred eecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 162 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
|++++|++.+.+|..+.++++|++|++++|++
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 77777777777777777777777777777654
No 48
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=1.6e-15 Score=133.17 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=100.3
Q ss_pred CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655 79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN 158 (194)
Q Consensus 79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 158 (194)
+..+..|+.|++++|.+. .+| ..+..+++|++|+|++| .++ .+|..|..+++|++|+|++|+++ .+|..|+.+++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~-~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NIS-ANIFKYDFLTRLYLNGN-SLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCC-GGGGGCCSCSCCBCTTS-CCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hccCCCCcEEECCCCCCC-CCC-hhhcCCCCCCEEEeeCC-cCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 456677888999999999 898 67779999999999999 888 78999999999999999999999 88999999999
Q ss_pred cceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
|++|+|++|.++ .+|..|+.+++|++|+|++|+|+
T Consensus 295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 999999999998 78999999999999999999874
No 49
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=4.8e-15 Score=116.66 Aligned_cols=123 Identities=24% Similarity=0.229 Sum_probs=103.4
Q ss_pred CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
..+...++....+..++.|+.+++++|+++ .++ . ...+++|++|++++| .++ .+|..+..+++|++|++++|+++
T Consensus 39 ~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~-~-~~~l~~L~~L~Ls~N-~l~-~l~~~~~~l~~L~~L~l~~N~l~ 113 (290)
T 1p9a_G 39 SENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-V-DGTLPVLGTLDLSHN-QLQ-SLPLLGQTLPALTVLDVSFNRLT 113 (290)
T ss_dssp TTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-C-CSCCTTCCEEECCSS-CCS-SCCCCTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCHHHhhcCCCCCEEECCCCccC-ccc-C-CCCCCcCCEEECCCC-cCC-cCchhhccCCCCCEEECCCCcCc
Confidence 345566666666777888888999999998 666 2 378899999999999 777 67888899999999999999999
Q ss_pred ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+..|..|.++++|+.|++++|++++..+..|..+++|+.|++++|+|+
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 666678999999999999999999766666889999999999999874
No 50
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3.2e-15 Score=108.13 Aligned_cols=108 Identities=27% Similarity=0.313 Sum_probs=95.8
Q ss_pred eeeeeeeeccCCccc-cccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655 82 VIGVSLLWYENDNIT-GELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV 160 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~-~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 160 (194)
...++.+++++|++. +.+| ..+..+++|++|++++| .+++. ..+..+++|++|++++|++.+.+|..+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 356777888999998 7888 67889999999999999 78864 7789999999999999999977888888899999
Q ss_pred eeecccCccCCCCc--cccCCCCCCCeEeccCCcCC
Q 046655 161 HLDLSDNYLSGYIP--PTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 161 ~L~L~~N~l~g~~p--~~~~~l~~L~~L~ls~N~ls 194 (194)
+|++++|++++ +| ..+..+++|++|++++|+++
T Consensus 99 ~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 99 HLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp EEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGG
T ss_pred EEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCc
Confidence 99999999995 44 78999999999999999863
No 51
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.59 E-value=8.1e-15 Score=117.62 Aligned_cols=108 Identities=26% Similarity=0.261 Sum_probs=90.9
Q ss_pred CcccccceeCCCCCeeeeeeeeccCC-ccccccCccccCCCCCccEEEecC-CCCCcccCCccccCCCCCCEeecCCCcc
Q 046655 68 HCKWTGVSCNSAGSVIGVSLLWYEND-NITGELGRFKFSCFPNLKSFKIHS-NYLLSGSIPSEIAAVSMLQTLELPSSSL 145 (194)
Q Consensus 68 ~c~~~gv~c~~~~~~~~l~~l~l~~n-~l~~~lp~~~~~~l~~L~~L~l~~-n~~l~~~~p~~~~~l~~L~~L~L~~n~l 145 (194)
.|.|..+.|. ++ +++ .+| . +..+++|++|+|++ | .+++..+..|..+++|+.|+|++|++
T Consensus 7 ~C~~~~v~~~--------------~~n~l~-~ip-~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l 68 (347)
T 2ifg_A 7 PHGSSGLRCT--------------RDGALD-SLH-H-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGL 68 (347)
T ss_dssp CSSSSCEECC--------------SSCCCT-TTT-T-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCC
T ss_pred cccCCEEEcC--------------CCCCCC-ccC-C-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCcc
Confidence 4777777664 33 566 788 5 88999999999996 8 89987778899999999999999999
Q ss_pred cccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 146 TGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 146 ~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++..|..|.++++|+.|+|++|+|++..+..+..++ |+.|++.+|+|.
T Consensus 69 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 988888999999999999999999965444555555 999999999874
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.58 E-value=7.2e-15 Score=125.85 Aligned_cols=110 Identities=17% Similarity=0.201 Sum_probs=99.7
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 162 (194)
..++.+++++|+++ .++...|..+++|++|++++| .+++..|..|.++++|++|++++|++.+..|..|+++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 55777899999999 555378999999999999999 8998888899999999999999999998889999999999999
Q ss_pred ecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 163 ~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++++|++++..|..++++++|++|++++|.++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIH 141 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCccc
Confidence 99999999766688999999999999999863
No 53
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.58 E-value=8.2e-15 Score=122.26 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=64.5
Q ss_pred cccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc
Q 046655 69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI 148 (194)
Q Consensus 69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 148 (194)
+...++....+..+..|+.+++++|++.+..| ..|..+++|++|++++| .+++..+..|.++++|++|++++|++.+.
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 42 NRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVIL 119 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred CccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccC
Confidence 33444444444555555555555555553333 45555555555555555 45533333445555555555555555555
Q ss_pred CchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 149 IPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 149 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
.|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++
T Consensus 120 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 455555555555555555555544444555555555555555543
No 54
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=5.2e-15 Score=126.54 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=81.1
Q ss_pred eeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeec
Q 046655 85 VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164 (194)
Q Consensus 85 l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 164 (194)
++.+++++|+++ .+| . +..+++|++|++++| .++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|++
T Consensus 443 L~~L~Ls~n~l~-~lp-~-~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 443 VRVLHLAHKDLT-VLC-H-LEQLLLVTHLDLSHN-RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp CSEEECTTSCCS-SCC-C-GGGGTTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred ceEEEecCCCCC-CCc-C-ccccccCcEeecCcc-ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 455777888888 577 4 778888888888888 777 678888888888888888888884 66 7888888888888
Q ss_pred ccCccCCCC-ccccCCCCCCCeEeccCCcC
Q 046655 165 SDNYLSGYI-PPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 165 ~~N~l~g~~-p~~~~~l~~L~~L~ls~N~l 193 (194)
++|++++.. |..++.+++|+.|++++|+|
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 888888665 78888888888888888876
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.57 E-value=8.9e-15 Score=130.23 Aligned_cols=127 Identities=22% Similarity=0.295 Sum_probs=105.3
Q ss_pred CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
..|...++....+.+++.|+.|++++|...+.+++..|..+++|++|++++| .+.+..|..|.++++|++|+|++|.+.
T Consensus 32 s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 110 (844)
T 3j0a_A 32 SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLS 110 (844)
T ss_dssp ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCS
T ss_pred CCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCC
Confidence 3455666666677888888889999987777885478889999999999999 888888888999999999999999998
Q ss_pred ccCchh--hccCcccceeecccCccCCCCc-cccCCCCCCCeEeccCCcCC
Q 046655 147 GIIPLE--MGRLRNLVHLDLSDNYLSGYIP-PTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 147 ~~~p~~--~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~ls 194 (194)
+.+|.. +..+++|++|++++|.+++..+ ..|+++++|++|++++|.++
T Consensus 111 ~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 767765 8889999999999999986544 56889999999999998763
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=123.71 Aligned_cols=126 Identities=20% Similarity=0.272 Sum_probs=99.1
Q ss_pred CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
..+...++....+..++.|+.+++++|++. .++...|..+++|++|++++| .+++..|..|.++++|++|++++|++.
T Consensus 36 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 113 (570)
T 2z63_A 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLA 113 (570)
T ss_dssp CSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccccc
Confidence 345566666666777888888888888888 454367888888888888888 777766778888888888888888888
Q ss_pred ccCchhhccCcccceeecccCccCC-CCccccCCCCCCCeEeccCCcCC
Q 046655 147 GIIPLEMGRLRNLVHLDLSDNYLSG-YIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 147 ~~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+..+..++.+++|++|++++|.+++ .+|..++++++|++|++++|.++
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 5444468888888888888888886 46888888888888888888763
No 57
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=8.1e-15 Score=108.84 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=53.7
Q ss_pred CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCc-ccccCchhhccCccc
Q 046655 81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSS-LTGIIPLEMGRLRNL 159 (194)
Q Consensus 81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L 159 (194)
.++.|+.+++++|++++..+ ..+..+++|++|++++| .+++..+..+..+++|++|++++|+ +. .+| .+..+++|
T Consensus 86 ~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L 161 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPEL 161 (197)
T ss_dssp TCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSC
T ss_pred cCCCCCEEEeECCccCcccC-hhhcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCC
Confidence 33444445555555554344 34555555555555555 4444444445555555555555554 33 333 35555555
Q ss_pred ceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+.|++++|++++ ++ .+..+++|++|++++|+|
T Consensus 162 ~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 162 KSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred CEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 555555555553 33 445555555555555554
No 58
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=5.7e-15 Score=109.69 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=97.2
Q ss_pred CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655 79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN 158 (194)
Q Consensus 79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 158 (194)
...+++|+.+++++|.+. .++ .+..+++|++|++++| .+++..+..+..+++|++|++++|++.+..|..+..+++
T Consensus 62 l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 137 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137 (197)
T ss_dssp GGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSS
T ss_pred HhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCC
Confidence 345667888999999776 554 6889999999999999 888777889999999999999999999888899999999
Q ss_pred cceeecccCc-cCCCCccccCCCCCCCeEeccCCcCC
Q 046655 159 LVHLDLSDNY-LSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 159 L~~L~L~~N~-l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
|++|++++|+ ++ .+| .+..+++|++|++++|.++
T Consensus 138 L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 138 VNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred CCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 9999999998 66 676 6899999999999999874
No 59
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=3.3e-15 Score=105.97 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=99.2
Q ss_pred CCcccc-cceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcc
Q 046655 67 YHCKWT-GVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSL 145 (194)
Q Consensus 67 ~~c~~~-gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l 145 (194)
..|... +........+..|+.+++++|+++ .+ ..+..+++|++|++++| .+++.+|..+..+++|++|++++|++
T Consensus 25 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N~i 100 (149)
T 2je0_A 25 DNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNKI 100 (149)
T ss_dssp TTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTSCC
T ss_pred cCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCCcC
Confidence 344444 333445577888999999999999 44 36889999999999999 88877888888899999999999999
Q ss_pred ccc-CchhhccCcccceeecccCccCCCCc---cccCCCCCCCeEeccC
Q 046655 146 TGI-IPLEMGRLRNLVHLDLSDNYLSGYIP---PTLGRLSKLEILNLSS 190 (194)
Q Consensus 146 ~~~-~p~~~~~l~~L~~L~L~~N~l~g~~p---~~~~~l~~L~~L~ls~ 190 (194)
++. .|..+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 101 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 963 34789999999999999999996544 4688999999999874
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=2.9e-15 Score=133.54 Aligned_cols=123 Identities=15% Similarity=0.247 Sum_probs=109.0
Q ss_pred CcccccceeCCCCCeeeeeeeeccCCcccc-----------------ccCccccC--CCCCccEEEecCCCCCcccCCcc
Q 046655 68 HCKWTGVSCNSAGSVIGVSLLWYENDNITG-----------------ELGRFKFS--CFPNLKSFKIHSNYLLSGSIPSE 128 (194)
Q Consensus 68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~-----------------~lp~~~~~--~l~~L~~L~l~~n~~l~~~~p~~ 128 (194)
.+.+.|+ ....++++.|+.|++++|+++| .+| ..+. .+++|++|++++| .+.+.+|..
T Consensus 434 ~N~L~~I-P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~ 510 (876)
T 4ecn_A 434 TNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLKDLTDVELYNC-PNMTQLPDF 510 (876)
T ss_dssp SCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEESC-TTCCSCCGG
T ss_pred cCcccch-hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-hhhhhccCCCCCEEECcCC-CCCccChHH
Confidence 4567773 4557888999999999999997 388 6777 9999999999999 889999999
Q ss_pred ccCCCCCCEeecCCCc-ccc-cCchhhccCc-------ccceeecccCccCCCCcc--ccCCCCCCCeEeccCCcCC
Q 046655 129 IAAVSMLQTLELPSSS-LTG-IIPLEMGRLR-------NLVHLDLSDNYLSGYIPP--TLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 129 ~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~g~~p~--~~~~l~~L~~L~ls~N~ls 194 (194)
+.++++|+.|++++|+ +++ .+|..++.++ +|+.|++++|+++ .+|. .++++++|+.|++++|.++
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 9999999999999998 998 8898888776 9999999999999 8898 8999999999999999874
No 61
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.56 E-value=6.3e-15 Score=120.03 Aligned_cols=108 Identities=25% Similarity=0.309 Sum_probs=72.8
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchh-hccCcccce
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE-MGRLRNLVH 161 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~ 161 (194)
+.|+.+++++|++. .++...+..+++|++|++++| .+++..|..+..+++|++|++++|++. .+|.. |..+++|++
T Consensus 69 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 69 RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred ccCcEEECCCCccc-ccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcE
Confidence 34444666666666 444356667777777777777 666655666677777777777777777 44443 567777777
Q ss_pred eecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 162 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
|++++|++++..|..+..+++|++|++++|.+
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 77777777765566677777777777777765
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=2.1e-14 Score=111.71 Aligned_cols=109 Identities=20% Similarity=0.265 Sum_probs=97.6
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 163 (194)
.++.+++++|+++ .++...+..+++|++|++++| .+++..+..|..+++|++|++++|.+.+..|..+.++++|++|+
T Consensus 29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCccc-ccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 4777899999999 565468999999999999999 88877777899999999999999999988778899999999999
Q ss_pred cccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 164 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+++|++++..+..+.++++|++|++++|.++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccc
Confidence 9999999766667999999999999999874
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.56 E-value=4.6e-15 Score=122.86 Aligned_cols=124 Identities=22% Similarity=0.269 Sum_probs=73.7
Q ss_pred CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
..+...++....+..+.+|+.+++++|++. .++...|..+++|++|++++| .++...+..|..+++|++|++++|++.
T Consensus 72 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 72 HENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp CSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred cCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCccc
Confidence 345555665566677777777777777777 444356777777777777777 676544556777777777777777776
Q ss_pred ccCchhhccCcccceeecccCccCCCCcc-ccCCCCCCCeEeccCCc
Q 046655 147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSND 192 (194)
Q Consensus 147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~-~~~~l~~L~~L~ls~N~ 192 (194)
...+..|..+++|+.|++++|+..+.++. .|..+++|++|++++|+
T Consensus 150 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 44444455555555555554222112222 34444444444444443
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=8.1e-15 Score=125.85 Aligned_cols=110 Identities=24% Similarity=0.258 Sum_probs=80.9
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 162 (194)
+.|+.+++++|.+. .++...|..+++|++|++++| .+++..|..|+.+++|++|+|++|.+.+..+..|+.+++|++|
T Consensus 75 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 75 RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 34455777777777 343257777888888888888 7777666667788888888888888874333446778888888
Q ss_pred ecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 163 ~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++++|.+++..|..|..+++|++|++++|.++
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 88888888777777888888888888888763
No 65
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=120.77 Aligned_cols=124 Identities=18% Similarity=0.186 Sum_probs=100.6
Q ss_pred CcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccc
Q 046655 68 HCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG 147 (194)
Q Consensus 68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 147 (194)
.|...++....++.+.+|+.+++++|+++ .+|...|..+++|++|++++| .+.+..+..|..+++|++|++++|.+.+
T Consensus 65 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 142 (477)
T 2id5_A 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVY 142 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCE
T ss_pred CCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccce
Confidence 45566666667788888889999999988 676456788899999999999 8887778888888999999999998887
Q ss_pred cCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
..|..|.++++|+.|++++|++++..+..+..+++|+.|++++|.+
T Consensus 143 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 7777888888888888888888865555677788888888877765
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.55 E-value=1.8e-14 Score=123.41 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=70.6
Q ss_pred CcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccc
Q 046655 68 HCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG 147 (194)
Q Consensus 68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 147 (194)
.+...++....++++++|+.+++++|++.+..| ..|..+++|++|++++| .+++..|..|..+++|++|++++|++++
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISS 119 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCC-cccccChhhhcccccccEeeccccCccc
Confidence 344444444455556666666666666663333 45666666666666666 5555555566666666666666666664
Q ss_pred cCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
..|..++.+++|++|++++|++++..++.+..+++|++|++++|.+
T Consensus 120 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence 4445556666666666666666642222333366666666666654
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=122.93 Aligned_cols=114 Identities=19% Similarity=0.235 Sum_probs=94.0
Q ss_pred CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCc-ccCCccccCCCCCCEeecCCCcccccCchhhccCc
Q 046655 79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLS-GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR 157 (194)
Q Consensus 79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 157 (194)
...+++|+.+++++|.+.+..| ..+..+++|++|++++| .+. +.+|..+..+++|++|++++|++++..|..+..++
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhcCCCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 4566777778888888886666 67788888888888888 666 56788888888999999999998877788888889
Q ss_pred ccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 158 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+|+.|++++|++++..|..+.++++|+.|++++|+++
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 9999999999998776777888899999999998764
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=118.53 Aligned_cols=110 Identities=22% Similarity=0.252 Sum_probs=71.4
Q ss_pred CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655 80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL 159 (194)
Q Consensus 80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 159 (194)
..+.+|+.+++++|+++ .+| .+..+++|++|++++| .+++..|..|..+++|++|++++|++.+..|..|..+++|
T Consensus 182 ~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLR-EIP--NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp TTCSSCCEEECTTSCCS-SCC--CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred hcccccCeecCCCCcCc-ccc--ccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 34445555555666555 555 3556666666666666 6666556666667777777777777766666666677777
Q ss_pred ceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+.|++++|++++..+..|..+++|+.|++++|++
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 7777777777755455566677777777777764
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.54 E-value=3.7e-14 Score=112.99 Aligned_cols=123 Identities=24% Similarity=0.366 Sum_probs=80.8
Q ss_pred CCCCcccccceeCCCC-------CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCE
Q 046655 65 TSYHCKWTGVSCNSAG-------SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQT 137 (194)
Q Consensus 65 ~~~~c~~~gv~c~~~~-------~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~ 137 (194)
....|.+..+.|...+ -...++.+++++|+++ .++...+..+++|++|++++| .+++..|..|..+++|++
T Consensus 27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLER 104 (330)
T ss_dssp TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCE
T ss_pred CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCE
Confidence 3455778888886311 1234666888888888 555357888888888888888 788777888888888888
Q ss_pred eecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCc
Q 046655 138 LELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSND 192 (194)
Q Consensus 138 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ 192 (194)
|++++|+++ .+|..+. ++|+.|++++|++++..+..+.++++|++|++++|.
T Consensus 105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred EECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence 888888877 4554432 455555555555554444444555555555555544
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=9.5e-15 Score=125.44 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=73.3
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 162 (194)
..++.+++++|.+. .+|...+..+++|++|++++| .+++..|..|..+++|++|+|++|.+.+..|..|+.+++|++|
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 44455666676666 566444566777777777777 6666666667777777777777777776555666777777777
Q ss_pred ecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 163 ~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
++++|.+++..+..|..+++|++|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 7777777743333356777777777777765
No 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.54 E-value=3.5e-14 Score=113.29 Aligned_cols=123 Identities=24% Similarity=0.373 Sum_probs=99.8
Q ss_pred CCCcccccceeCCCC-------CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEe
Q 046655 66 SYHCKWTGVSCNSAG-------SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTL 138 (194)
Q Consensus 66 ~~~c~~~gv~c~~~~-------~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L 138 (194)
...|.|..+.|...+ -...++.+++++|++. .++...+..+++|++|++++| .+++..|..|..+++|++|
T Consensus 30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEE
T ss_pred CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEE
Confidence 345788888886311 1235677899999999 554368999999999999999 8888778899999999999
Q ss_pred ecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 139 ELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 139 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
++++|++. .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.+
T Consensus 108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 99999998 6776655 7899999999999865555688899999999998876
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.54 E-value=1.3e-14 Score=125.97 Aligned_cols=123 Identities=25% Similarity=0.177 Sum_probs=82.0
Q ss_pred cccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc
Q 046655 69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI 148 (194)
Q Consensus 69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 148 (194)
+...++....+++++.|+.+++++|++.+..| ..+..+++|++|++++| .+++..+..|+++++|++|++++|++.+.
T Consensus 35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 112 (680)
T 1ziw_A 35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKI 112 (680)
T ss_dssp SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCcc
Confidence 34444444445556666667777777774444 56667777777777777 66643333577777777777777777655
Q ss_pred CchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 149 IPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 149 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
.|..|+++++|++|++++|++++..|..+.++++|++|++++|.+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 556677777777777777777766666677777777777777755
No 73
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.54 E-value=2.8e-14 Score=122.15 Aligned_cols=109 Identities=19% Similarity=0.121 Sum_probs=99.4
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 163 (194)
.++.+++++|++++..| ..|..+++|++|++++| .+.+..|..|.++++|++|++++|++.+..|..|+++++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCccCcCCh-hHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 46678999999994445 78999999999999999 88888899999999999999999999988899999999999999
Q ss_pred cccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 164 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+++|++++..|..++++++|++|++++|.++
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~ 142 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCccc
Confidence 9999999766788999999999999999874
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=2.4e-14 Score=109.20 Aligned_cols=103 Identities=20% Similarity=0.283 Sum_probs=54.6
Q ss_pred eeeeeccCCccccccCccccCCCCCccEEEecCCCC-CcccCCccccCCCCCCEeecCC-CcccccCchhhccCccccee
Q 046655 85 VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYL-LSGSIPSEIAAVSMLQTLELPS-SSLTGIIPLEMGRLRNLVHL 162 (194)
Q Consensus 85 l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L 162 (194)
++.+++++|+++ .++...+..+++|++|++++| . ++...+..|..+++|++|++++ |++++..+..|.++++|++|
T Consensus 33 l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp CCEEEEESCCCS-EECTTTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred ccEEEEeCCcce-EECHHHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 444555666655 444345555666666666666 3 4443334555566666666665 55554433445555555555
Q ss_pred ecccCccCCCCccccCCCCCCC---eEeccCC
Q 046655 163 DLSDNYLSGYIPPTLGRLSKLE---ILNLSSN 191 (194)
Q Consensus 163 ~L~~N~l~g~~p~~~~~l~~L~---~L~ls~N 191 (194)
++++|++++ +|. +..+++|+ +|++++|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCC
Confidence 555555553 443 44444444 5555544
No 75
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2e-14 Score=104.91 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=78.8
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCch--hhccCcccce
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL--EMGRLRNLVH 161 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~ 161 (194)
.|+.+++++|+++ .++ .+..+++|++|++++| .+++..+..+..+++|++|++++|++. .+|. .+..+++|+.
T Consensus 43 ~L~~L~Ls~N~l~-~~~--~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 43 QFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY 117 (176)
T ss_dssp CCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred CCCEEECCCCCCC-ccc--ccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCE
Confidence 6777888888888 453 5777888888888888 777543344478888888888888886 5665 6778888888
Q ss_pred eecccCccCCCCccc----cCCCCCCCeEeccCCcC
Q 046655 162 LDLSDNYLSGYIPPT----LGRLSKLEILNLSSNDL 193 (194)
Q Consensus 162 L~L~~N~l~g~~p~~----~~~l~~L~~L~ls~N~l 193 (194)
|++++|.++ .+|.. +..+++|++||+++|.+
T Consensus 118 L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 118 LCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 888888887 56664 77888888888887753
No 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=128.01 Aligned_cols=120 Identities=23% Similarity=0.214 Sum_probs=102.5
Q ss_pred cccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccC-CccccCCCCCCEeecCCCcccc
Q 046655 69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSI-PSEIAAVSMLQTLELPSSSLTG 147 (194)
Q Consensus 69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~-p~~~~~l~~L~~L~L~~n~l~~ 147 (194)
|.|..|.+ -...++.+++++|.+++..+ ..|..+++|++|++++| ...+.+ |..|.++++|++|+|++|.+.+
T Consensus 14 ~~L~~vP~----lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 14 CNLTQVPQ----VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CCSSCCCS----SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCCCCC----CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 44555554 23456667889999995555 78999999999999999 555555 7889999999999999999998
Q ss_pred cCchhhccCcccceeecccCccCCCCccc--cCCCCCCCeEeccCCcCC
Q 046655 148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPT--LGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~--~~~l~~L~~L~ls~N~ls 194 (194)
..|..|+++++|++|++++|++++.+|.. +.++++|++|++++|.++
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~ 136 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence 88999999999999999999999877765 899999999999999874
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=4.8e-15 Score=117.58 Aligned_cols=111 Identities=18% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCeeeeeeeeccCCccccccCccccCCC-----CCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc--Cchh
Q 046655 80 GSVIGVSLLWYENDNITGELGRFKFSCF-----PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI--IPLE 152 (194)
Q Consensus 80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l-----~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~ 152 (194)
+.++.|+.+++++|++++. | ..+..+ ++|++|++++| .+.+..|..|..+++|++|++++|++.+. +|..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~-~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-D-AWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-S-SHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred hcCCCccEEEccCCCCcch-h-HHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 4455555555556555533 4 344433 55666666666 55554445556666666666666665443 2233
Q ss_pred h--ccCcccceeecccCccCC--CCc-cccCCCCCCCeEeccCCcC
Q 046655 153 M--GRLRNLVHLDLSDNYLSG--YIP-PTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 153 ~--~~l~~L~~L~L~~N~l~g--~~p-~~~~~l~~L~~L~ls~N~l 193 (194)
+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|++
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 3 555666666666666652 111 1233555666666666654
No 78
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.53 E-value=4.5e-14 Score=114.99 Aligned_cols=109 Identities=18% Similarity=0.234 Sum_probs=77.5
Q ss_pred eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655 82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 161 (194)
+..++.+++++|.+. .+|...+..+++|++|++++| .+++..+..|..+++|++|++++|++.+..|..++.+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 355566777777776 666444667777777777777 676655667777777778888777777666666777777777
Q ss_pred eecccCccCCCCccc-cCCCCCCCeEeccCCcC
Q 046655 162 LDLSDNYLSGYIPPT-LGRLSKLEILNLSSNDL 193 (194)
Q Consensus 162 L~L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~l 193 (194)
|++++|+++ .+|.. |.++++|++|++++|.+
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCcc
Confidence 887777777 44444 57777777777777765
No 79
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=1.8e-14 Score=126.40 Aligned_cols=154 Identities=18% Similarity=0.123 Sum_probs=93.2
Q ss_pred cCCCCchhHHHHHHHhhcCC-CCCCCCCCCCCCCCCcccccceeCCCCCeeeeee---------------eeccCCcccc
Q 046655 34 AAGLLSSPKLLEREALLATG-WWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSL---------------LWYENDNITG 97 (194)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~-~~~~~w~~~~~~~~~c~~~gv~c~~~~~~~~l~~---------------l~l~~n~l~~ 97 (194)
....+..++.++........ .....|. ......+.|.++.+.. .+++.+.+ +.|+.|.|.+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~ 205 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVST-PLTPKIELFANGKDEANQALLQHKKLSQYSIDE 205 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceecC-CccceEEeeCCCCCcchhhHhhcCccCcccccC
Confidence 34666788888887765443 2234562 3344556677665543 22333222 4444444432
Q ss_pred --------ccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCcc
Q 046655 98 --------ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYL 169 (194)
Q Consensus 98 --------~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 169 (194)
.++...+..++.|+.|+|++| .+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|+|
T Consensus 206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMVMPKDSKYDDQLWHALDLSNL-QIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp ----------------CCCCCCEEECTTS-CCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred ccccccceecChhhhccCCCCcEEECCCC-CCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 122367888999999999999 777 68888889999999999999999 8999999999999999999999
Q ss_pred CCCCccccCCCCCCCeEeccCCcCC
Q 046655 170 SGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 170 ~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+ .+|..|+.+++|++|+|++|.|+
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC
Confidence 9 88999999999999999999874
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=1.1e-14 Score=111.09 Aligned_cols=123 Identities=15% Similarity=0.262 Sum_probs=92.9
Q ss_pred CcccccceeCCCCCeeeeeeeeccCCc-cccccCccccCCCCCccEEEecC-CCCCcccCCccccCCCCCCEeecCCCcc
Q 046655 68 HCKWTGVSCNSAGSVIGVSLLWYENDN-ITGELGRFKFSCFPNLKSFKIHS-NYLLSGSIPSEIAAVSMLQTLELPSSSL 145 (194)
Q Consensus 68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~-l~~~lp~~~~~~l~~L~~L~l~~-n~~l~~~~p~~~~~l~~L~~L~L~~n~l 145 (194)
.+...++....+..+++|+.+++++|+ ++ .++...|..+++|++|++++ | .+++..+..|..+++|++|++++|++
T Consensus 40 ~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 40 ETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp SCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEEEEEEECC
T ss_pred CCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCCC
Confidence 345555555566777888888888886 76 66645788888888888887 7 77766666788888888888888888
Q ss_pred cccCchhhccCcccc---eeecccC-ccCCCCccccCCCCCCC-eEeccCCcCC
Q 046655 146 TGIIPLEMGRLRNLV---HLDLSDN-YLSGYIPPTLGRLSKLE-ILNLSSNDLY 194 (194)
Q Consensus 146 ~~~~p~~~~~l~~L~---~L~L~~N-~l~g~~p~~~~~l~~L~-~L~ls~N~ls 194 (194)
++ +|. +..+++|+ .|++++| ++++..+..|..+++|+ +|++++|+++
T Consensus 118 ~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 118 KM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp CS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred cc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 84 665 77777777 8888888 78755555677888888 8888887763
No 81
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=8.4e-14 Score=101.51 Aligned_cols=104 Identities=18% Similarity=0.234 Sum_probs=88.5
Q ss_pred eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecc
Q 046655 86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS 165 (194)
Q Consensus 86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 165 (194)
..++++++++. .+| ..+ .+.+++|++++| .+++..+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 10 ~~l~~~~~~l~-~~p-~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVP-TGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCSSCCS-SCC-TTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCCc-cCC-CCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 34667888888 787 333 478999999999 8887666678999999999999999996655668999999999999
Q ss_pred cCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 166 DNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 166 ~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+|++++..+..+..+++|++|++++|.++
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcce
Confidence 99999766666899999999999999874
No 82
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.52 E-value=3.7e-14 Score=113.03 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=70.0
Q ss_pred CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655 81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV 160 (194)
Q Consensus 81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 160 (194)
.+++|+.+++++|+++ .+| ..+ .++|++|++++| .+++..+..+..+++|++|++++|++.+..+..+..+++|+
T Consensus 169 ~l~~L~~L~l~~n~l~-~l~-~~~--~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 243 (330)
T 1xku_A 169 GMKKLSYIRIADTNIT-TIP-QGL--PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243 (330)
T ss_dssp GCTTCCEEECCSSCCC-SCC-SSC--CTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred CCCCcCEEECCCCccc-cCC-ccc--cccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence 3444555555555555 454 222 256666666666 66655566677777777777777777765555677777777
Q ss_pred eeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
.|++++|+++ .+|..+..+++|++|++++|+|+
T Consensus 244 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred EEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 7777777777 66767777777777777777653
No 83
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.52 E-value=4.2e-14 Score=117.46 Aligned_cols=104 Identities=22% Similarity=0.185 Sum_probs=54.1
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 163 (194)
.++.+++++|++.+..+ ..|..+++|++|++++| .+++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 76 ~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CccEEECcCCcCceECH-HHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 34445556666653223 45555666666666666 55555555555566666666666665533333455555566666
Q ss_pred cccCccCCCCccccCCCCCCCeEecc
Q 046655 164 LSDNYLSGYIPPTLGRLSKLEILNLS 189 (194)
Q Consensus 164 L~~N~l~g~~p~~~~~l~~L~~L~ls 189 (194)
+++|++++..+..|.++++|++|+++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCC
Confidence 66555553333233344444444443
No 84
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.51 E-value=1.3e-14 Score=122.84 Aligned_cols=125 Identities=19% Similarity=0.170 Sum_probs=82.6
Q ss_pred CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
..|...++....+..++.|+.+++++|++.+..| ..+..+++|++|++++| .+++..|..|+.+++|++|++++|.+.
T Consensus 34 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 34 SFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp CSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred cCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCccc
Confidence 3455566655566677777777777777774333 56777777777777777 666655555777777777777777776
Q ss_pred c-cCchhhccCcccceeecccCccCCCCc-cccCCCCCCCeEeccCCcC
Q 046655 147 G-IIPLEMGRLRNLVHLDLSDNYLSGYIP-PTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 147 ~-~~p~~~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~l 193 (194)
+ ..|..++.+++|++|++++|++.+.+| ..+.++++|++|++++|.+
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 4 345566677777777777776433444 4566667777777766654
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.51 E-value=4.5e-14 Score=120.25 Aligned_cols=105 Identities=24% Similarity=0.259 Sum_probs=59.6
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 163 (194)
.++.+++++|++. .++...+..+++|++|++++| .+++..|..|..+++|++|++++|+++ .+|.. .+++|++|+
T Consensus 53 ~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 53 RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CcCEEECCCCCcc-ccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 3444555666665 333245566666666666666 555555555666666666666666665 44444 556666666
Q ss_pred cccCccCC-CCccccCCCCCCCeEeccCCcC
Q 046655 164 LSDNYLSG-YIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 164 L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+++|++++ .+|..|+++++|++|++++|++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 66666654 2345566666666666666554
No 86
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.51 E-value=6.8e-14 Score=116.18 Aligned_cols=123 Identities=20% Similarity=0.283 Sum_probs=79.3
Q ss_pred CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
..+...++..+.+.++..|+.+++++|++. .++...|..+++|++|++++| .+++..+..|..+++|++|+|++|++.
T Consensus 83 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 83 MENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred cCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCCcc
Confidence 345566666666777888888888888888 444367888888888888888 777655566788888888888888887
Q ss_pred ccCchhhccCcccceeecccC-ccCCCCcc-ccCCCCCCCeEeccCCc
Q 046655 147 GIIPLEMGRLRNLVHLDLSDN-YLSGYIPP-TLGRLSKLEILNLSSND 192 (194)
Q Consensus 147 ~~~p~~~~~l~~L~~L~L~~N-~l~g~~p~-~~~~l~~L~~L~ls~N~ 192 (194)
...+..|..+++|+.|++++| .+. .++. .|..+++|++|++++|+
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~~~~l~-~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 161 SIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp EECTTTTTTCTTCCEEECCCCTTCC-EECTTTTTTCTTCCEEECTTSC
T ss_pred eeCHhHHhcCCcccEEeCCCCCCcc-ccChhhccCCCCCCEEECCCCc
Confidence 544444555555555555542 222 2222 24444444444444443
No 87
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=116.17 Aligned_cols=121 Identities=19% Similarity=0.188 Sum_probs=54.5
Q ss_pred cccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc
Q 046655 69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI 148 (194)
Q Consensus 69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 148 (194)
+...++.......+++|+.+++++|++++..+ ..+..+++|++|++++| .+++..+..+..+++|++|++++|++. .
T Consensus 62 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~ 138 (353)
T 2z80_A 62 NRITYISNSDLQRCVNLQALVLTSNGINTIEE-DSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYK-T 138 (353)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCS-S
T ss_pred CcCcccCHHHhccCCCCCEEECCCCccCccCH-hhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCc-c
Confidence 33444433344455555555555555552222 34555555555555555 444322222445555555555555554 2
Q ss_pred Cch--hhccCcccceeecccC-ccCCCCccccCCCCCCCeEeccCCc
Q 046655 149 IPL--EMGRLRNLVHLDLSDN-YLSGYIPPTLGRLSKLEILNLSSND 192 (194)
Q Consensus 149 ~p~--~~~~l~~L~~L~L~~N-~l~g~~p~~~~~l~~L~~L~ls~N~ 192 (194)
+|. .+..+++|++|++++| .+++..|..+.++++|++|++++|.
T Consensus 139 l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 332 3444444444444444 2332223334444444444444443
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.50 E-value=2.6e-14 Score=120.35 Aligned_cols=106 Identities=27% Similarity=0.272 Sum_probs=66.5
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 162 (194)
..++.+++++|++. .++...+..+++|++|++++| .+++..|..|..+++|++|++++|+++ .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEE
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEE
Confidence 44555566666666 333245666666666666666 666555666666666666666666666 45544 56666666
Q ss_pred ecccCccCC-CCccccCCCCCCCeEeccCCcC
Q 046655 163 DLSDNYLSG-YIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 163 ~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~l 193 (194)
++++|++++ .+|..++++++|++|++++|.+
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred eccCCccccccchhhhccCCcceEEEecCccc
Confidence 666666665 3556666666666666666654
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.50 E-value=9.1e-14 Score=120.59 Aligned_cols=122 Identities=27% Similarity=0.266 Sum_probs=64.6
Q ss_pred cccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc--
Q 046655 69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT-- 146 (194)
Q Consensus 69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~-- 146 (194)
|...++....+..+.+|+.+++++|++.+.+|...+..+++|++|++++| .+.+..+..|..+++|+.|++++|.+.
T Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred CCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC-CcceeChhhhhcCcccccchhcccccccc
Confidence 34445545556667777778888888876666556777777777777777 555443444444444444444444332
Q ss_pred ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCC
Q 046655 147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191 (194)
Q Consensus 147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N 191 (194)
+.+|..+..+++|+.|++++|++++..|..|..+++|++|++++|
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC
Confidence 233344444444444444444444333333444444444444444
No 90
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.49 E-value=6.7e-14 Score=111.19 Aligned_cols=119 Identities=20% Similarity=0.181 Sum_probs=88.0
Q ss_pred ccccceeCCCCCeeeeeeeeccCCccccccCcccc-CCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc
Q 046655 70 KWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKF-SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI 148 (194)
Q Consensus 70 ~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~-~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 148 (194)
.+.++.....+.++.|+.+++++|++.+..+ ..+ ..+++|++|++++| .+++. + ....+++|++|++++|++++
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N-~l~~~-~-~~~~l~~L~~L~Ls~N~l~~- 205 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYN-FIYDV-K-GQVVFAKLKTLDLSSNKLAF- 205 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTS-CCCEE-E-CCCCCTTCCEEECCSSCCCE-
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCC-cCccc-c-cccccccCCEEECCCCcCCc-
Confidence 3344434445556677778888888774444 444 36778888888888 66643 3 23458889999999999884
Q ss_pred CchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 149 IPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 149 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 206 l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 5566888899999999999999 57888888999999999999863
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.49 E-value=1.6e-14 Score=114.48 Aligned_cols=110 Identities=25% Similarity=0.230 Sum_probs=80.0
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCccc--CCccc--cCCCCCCEeecCCCcccc--cCc-hhhcc
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGS--IPSEI--AAVSMLQTLELPSSSLTG--IIP-LEMGR 155 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~--~p~~~--~~l~~L~~L~L~~n~l~~--~~p-~~~~~ 155 (194)
++|+.+++++|++.+..+ ..+..+++|++|++++| .+.+. ++..+ ..+++|++|++++|++++ .++ ..+..
T Consensus 149 ~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 226 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSC-EQVRVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226 (312)
T ss_dssp TTCCEEEEESCSCCCCCT-TTCCCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred CCCcEEEeeCCCCccchH-HHhccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc
Confidence 667778888888884444 67888888888888888 66554 23333 678888888888888873 222 23456
Q ss_pred CcccceeecccCccCCCCc-cccCCCCCCCeEeccCCcCC
Q 046655 156 LRNLVHLDLSDNYLSGYIP-PTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 156 l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~ls 194 (194)
+++|+.|++++|++++..| ..+..+++|++|++++|+|+
T Consensus 227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 7888888888888887664 44566788888888888764
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=6.1e-14 Score=117.82 Aligned_cols=111 Identities=20% Similarity=0.193 Sum_probs=72.7
Q ss_pred CCCCeeeeeeeeccCCccccccCccccC-CCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccC
Q 046655 78 SAGSVIGVSLLWYENDNITGELGRFKFS-CFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRL 156 (194)
Q Consensus 78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~-~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 156 (194)
..+.++.|+.+++++|.+++..| ..+. .++.|++|++++| .+++. + .+..+++|++|+|++|.+++ +|+.+..+
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~~l~~L~~L~Ls~N-~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l 213 (487)
T 3oja_A 139 DEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYN-FIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSA 213 (487)
T ss_dssp CGGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTS-CCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGG
T ss_pred hhcCCCCCCEEECCCCCCCCcCh-HHHhhhCCcccEEecCCC-ccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCC
Confidence 33445555556666666665444 3443 5666666666666 55543 2 23346777777777777774 44457777
Q ss_pred cccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 157 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++|+.|++++|.+++ +|..+..+++|+.|++++|+++
T Consensus 214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 888888888888884 6777777788888888887753
No 93
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=2.7e-14 Score=104.18 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=89.5
Q ss_pred eeeeeeeeccCCccccccCccccCCC-CCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655 82 VIGVSLLWYENDNITGELGRFKFSCF-PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV 160 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~~~lp~~~~~~l-~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 160 (194)
...++.+++++|++. .++ . +..+ ++|++|++++| .+++. ..+..+++|++|++++|++++..|..+..+++|+
T Consensus 18 ~~~L~~L~l~~n~l~-~i~-~-~~~~~~~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIE-N-LGATLDQFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCC-SCC-C-GGGGTTCCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCc-hhH-H-hhhcCCCCCEEECCCC-CCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 445677888999999 776 3 4444 49999999999 88864 6789999999999999999965445568999999
Q ss_pred eeecccCccCCCCcc--ccCCCCCCCeEeccCCcCC
Q 046655 161 HLDLSDNYLSGYIPP--TLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 161 ~L~L~~N~l~g~~p~--~~~~l~~L~~L~ls~N~ls 194 (194)
+|++++|+++ .+|. .+..+++|++|++++|+++
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 9999999997 6776 7899999999999999863
No 94
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.48 E-value=6.8e-14 Score=117.79 Aligned_cols=107 Identities=22% Similarity=0.316 Sum_probs=62.7
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 162 (194)
++|+.+++++|++.+.+|...+..++.|++|++++| .+++.+|..+. ++|++|++++|+++ .+|..+..+++|++|
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 333334444444443344222444444455555444 44443333332 46666666666666 667666677777788
Q ss_pred ecccCccCCCCccc-cCCCCCCCeEeccCCcCC
Q 046655 163 DLSDNYLSGYIPPT-LGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 163 ~L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~ls 194 (194)
++++|+++ .+|.. +..+++|++|++++|+++
T Consensus 450 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCcCC-ccCHHHhccCCcccEEECcCCCCc
Confidence 88777777 45655 777777888888877763
No 95
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.47 E-value=9.3e-14 Score=110.85 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=48.2
Q ss_pred CCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEe
Q 046655 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILN 187 (194)
Q Consensus 108 ~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ 187 (194)
++|++|++++| .+++..+..+..+++|++|++++|++.+..|..+..+++|+.|++++|+++ .+|..+..+++|++|+
T Consensus 193 ~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 193 ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270 (332)
T ss_dssp SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence 34555555555 555444455555566666666666665444445555566666666666665 4555555566666666
Q ss_pred ccCCcC
Q 046655 188 LSSNDL 193 (194)
Q Consensus 188 ls~N~l 193 (194)
+++|+|
T Consensus 271 l~~N~l 276 (332)
T 2ft3_A 271 LHTNNI 276 (332)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 666554
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.47 E-value=1.5e-13 Score=116.93 Aligned_cols=107 Identities=20% Similarity=0.315 Sum_probs=59.7
Q ss_pred eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655 82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 161 (194)
++.|+.+++++|++.+.+|...+..+++|++|++++| .+++.+|..+. ++|++|++++|+++ .+|..+..+++|+.
T Consensus 402 l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQE 477 (562)
T ss_dssp CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCE
Confidence 3334444444444443344223344444444444444 44433333222 45666666666666 56666667777777
Q ss_pred eecccCccCCCCccc-cCCCCCCCeEeccCCcC
Q 046655 162 LDLSDNYLSGYIPPT-LGRLSKLEILNLSSNDL 193 (194)
Q Consensus 162 L~L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~l 193 (194)
|++++|+++ .+|.. +..+++|+.|++++|++
T Consensus 478 L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 478 LNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred EECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 777777777 45555 67777777777777765
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=8.7e-14 Score=116.89 Aligned_cols=119 Identities=21% Similarity=0.259 Sum_probs=95.5
Q ss_pred CcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCcccc-CCCCCCEeecCCCccc
Q 046655 68 HCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIA-AVSMLQTLELPSSSLT 146 (194)
Q Consensus 68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~-~l~~L~~L~L~~n~l~ 146 (194)
.|.+.++.+.. +..|..+++++|.+++..| ..+..+++|++|++++| .+++..|..+. .+++|+.|+|++|.++
T Consensus 108 ~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 108 NNNISRVSCSR---GQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp SSCCCCEEECC---CSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCcCCCCCccc---cCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccc
Confidence 34555555543 3556778889999996556 67888999999999999 88887787776 7899999999999998
Q ss_pred ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+. |. +..+++|+.|++++|++++ +|+.+..+++|+.|++++|.|+
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 183 DV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred cc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc
Confidence 65 33 4468999999999999996 5556889999999999999874
No 98
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.6e-13 Score=97.81 Aligned_cols=106 Identities=21% Similarity=0.260 Sum_probs=86.5
Q ss_pred CCCCcccccceeCCC-------CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCE
Q 046655 65 TSYHCKWTGVSCNSA-------GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQT 137 (194)
Q Consensus 65 ~~~~c~~~gv~c~~~-------~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~ 137 (194)
....|.|+.+.|... +-...++.+++++|++++..| ..|..+++|++|++++| .+++..+..|..+++|++
T Consensus 5 ~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 5 SQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp -CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCC-CcCccChhhccCCCCCCE
Confidence 345577888888631 122456779999999994445 78999999999999999 899766667899999999
Q ss_pred eecCCCcccccCchhhccCcccceeecccCccCCC
Q 046655 138 LELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGY 172 (194)
Q Consensus 138 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ 172 (194)
|+|++|++++..+..|..+++|+.|++++|.++..
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99999999966566799999999999999999854
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=5e-13 Score=105.10 Aligned_cols=105 Identities=29% Similarity=0.455 Sum_probs=65.9
Q ss_pred CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655 79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN 158 (194)
Q Consensus 79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 158 (194)
...+++|+.+++++|++. .++ .+..+++|++|++++| .+++ + +.+..+++|+.|++++|++++. ..+..+++
T Consensus 86 l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n-~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 157 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVK-DLS--SLKDLKKLKSLSLEHN-GISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTK 157 (291)
T ss_dssp GTTCTTCCEEECCSSCCC-CGG--GGTTCTTCCEEECTTS-CCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred cccCCCCCEEECCCCcCC-CCh--hhccCCCCCEEECCCC-cCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCC
Confidence 345555666666666666 444 3666667777777776 5553 2 3466666677777777766643 45666677
Q ss_pred cceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
|+.|++++|++++. +. +..+++|++|++++|.+
T Consensus 158 L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 158 LDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred CCEEEccCCccccc-hh-hcCCCccCEEECCCCcC
Confidence 77777777777643 33 66667777777776665
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=4.9e-14 Score=111.56 Aligned_cols=110 Identities=24% Similarity=0.198 Sum_probs=62.9
Q ss_pred CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCccc--C--CccccCCCCCCEeecCCCcccccCch----h
Q 046655 81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGS--I--PSEIAAVSMLQTLELPSSSLTGIIPL----E 152 (194)
Q Consensus 81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~--~--p~~~~~l~~L~~L~L~~n~l~~~~p~----~ 152 (194)
...+|+.+++++|++.+..+ ..+..+++|++|++++| .+.+. + +..+..+++|++|++++|+++ .+|. .
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l 219 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSC-EQVRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAAL 219 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCT-TSCCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhH-HHhccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHH
Confidence 35566666667777763333 56666777777777777 54431 1 222345666666666666665 2222 1
Q ss_pred hccCcccceeecccCccCCCCccccCCC---CCCCeEeccCCcC
Q 046655 153 MGRLRNLVHLDLSDNYLSGYIPPTLGRL---SKLEILNLSSNDL 193 (194)
Q Consensus 153 ~~~l~~L~~L~L~~N~l~g~~p~~~~~l---~~L~~L~ls~N~l 193 (194)
+..+++|++|++++|++++..|..+..+ ++|++|++++|+|
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence 3455666666666666665555555544 4666666666654
No 101
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.44 E-value=2.6e-13 Score=108.55 Aligned_cols=107 Identities=25% Similarity=0.323 Sum_probs=75.7
Q ss_pred CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655 80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL 159 (194)
Q Consensus 80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 159 (194)
....+|+.+++++|++. .++ .+..+++|++|++++| .+++ + +.+..+++|+.|++++|.+.+..|..+..+++|
T Consensus 240 ~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~~n-~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQIS-DIN--AVKDLTKLKMLNVGSN-QISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp TTCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSS-CCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred hcCCCCCEEECCCCccC-CCh--hHhcCCCcCEEEccCC-ccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 45555666677777766 443 4667777777777777 6664 3 346777888888888888877777778888888
Q ss_pred ceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+.|++++|++++..| +..+++|++|++++|+|+
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888888888885444 677888888888888764
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=2.8e-13 Score=107.21 Aligned_cols=118 Identities=25% Similarity=0.283 Sum_probs=65.2
Q ss_pred cccceeCCCCCeeeeeeeeccCCccccc--cCc-cccCCCCCccEEEecCCCCCcccCCc----cccCCCCCCEeecCCC
Q 046655 71 WTGVSCNSAGSVIGVSLLWYENDNITGE--LGR-FKFSCFPNLKSFKIHSNYLLSGSIPS----EIAAVSMLQTLELPSS 143 (194)
Q Consensus 71 ~~gv~c~~~~~~~~l~~l~l~~n~l~~~--lp~-~~~~~l~~L~~L~l~~n~~l~~~~p~----~~~~l~~L~~L~L~~n 143 (194)
..++.+...+.+..|+.+++++|++.+. ++. ..+..+++|++|++++| .++. ++. .+..+++|++|++++|
T Consensus 157 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~-l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 157 SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMET-PTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCC-HHHHHHHHHHHTCCCSSEECTTS
T ss_pred cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCc-hHHHHHHHHhcCCCCCEEECCCC
Confidence 3344444455556666666666665432 210 12245666666666666 5541 222 1345566666666666
Q ss_pred cccccCchhhccC---cccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 144 SLTGIIPLEMGRL---RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 144 ~l~~~~p~~~~~l---~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
++.+..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++
T Consensus 235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l 284 (310)
T 4glp_A 235 SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL 284 (310)
T ss_dssp CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCC
T ss_pred CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcC
Confidence 6665555555544 46666666666666 4555543 5666666666655
No 103
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.42 E-value=9.8e-13 Score=104.15 Aligned_cols=105 Identities=23% Similarity=0.381 Sum_probs=56.1
Q ss_pred CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655 79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN 158 (194)
Q Consensus 79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 158 (194)
...+++|+.+++++|++. .++ .+..+++|++|++++| .+++ ++. +..+++|++|++++|++++. +. +..+++
T Consensus 81 ~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~l~~n-~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~ 152 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLDLTST-QITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTN 152 (308)
T ss_dssp GTTCCSCCEEECCSCCCS-CCG--GGTTCTTCCEEECTTS-CCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTT
T ss_pred HccCCCCCEEEccCCcCC-Cch--hhcCCCCCCEEECCCC-CCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCC
Confidence 344555555666666655 343 3555666666666666 5543 222 55555566666666655532 22 555555
Q ss_pred cceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
|+.|++++|++++ ++. +..+++|+.|++++|.+
T Consensus 153 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 153 LQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp CCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred ccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence 5555555555553 333 55555555555555544
No 104
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=4.1e-13 Score=114.78 Aligned_cols=115 Identities=18% Similarity=0.133 Sum_probs=97.7
Q ss_pred CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
..|...++. ..+.++.|+.|++++|+++ .+| ..+..+++|++|++++| .+++ +| .++.+++|+.|+|++|+++
T Consensus 449 s~n~l~~lp--~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N-~l~~-lp-~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 449 AHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALP-PALAALRCLEVLQASDN-ALEN-VD-GVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp TTSCCSSCC--CGGGGTTCCEEECCSSCCC-CCC-GGGGGCTTCCEEECCSS-CCCC-CG-GGTTCSSCCEEECCSSCCC
T ss_pred cCCCCCCCc--CccccccCcEeecCccccc-ccc-hhhhcCCCCCEEECCCC-CCCC-Cc-ccCCCCCCcEEECCCCCCC
Confidence 445555653 2677888999999999999 999 78999999999999999 8886 67 8999999999999999999
Q ss_pred ccC-chhhccCcccceeecccCccCCCCccc---cCCCCCCCeEec
Q 046655 147 GII-PLEMGRLRNLVHLDLSDNYLSGYIPPT---LGRLSKLEILNL 188 (194)
Q Consensus 147 ~~~-p~~~~~l~~L~~L~L~~N~l~g~~p~~---~~~l~~L~~L~l 188 (194)
+.. |..++.+++|+.|++++|++++..|.. +..+++|+.|++
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 776 999999999999999999999654422 334899999875
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=1.5e-12 Score=100.89 Aligned_cols=103 Identities=21% Similarity=0.344 Sum_probs=49.4
Q ss_pred CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCc--------------------cccCCCCCCEeec
Q 046655 81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPS--------------------EIAAVSMLQTLEL 140 (194)
Q Consensus 81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~--------------------~~~~l~~L~~L~L 140 (194)
.++.|+.+++++|+++ .++ . +..+++|++|++++| .+++ +|. .+..+++|+.|++
T Consensus 61 ~l~~L~~L~L~~N~i~-~~~-~-l~~l~~L~~L~L~~N-~l~~-l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L 135 (263)
T 1xeu_A 61 FFTNLKELHLSHNQIS-DLS-P-LKDLTKLEELSVNRN-RLKN-LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSI 135 (263)
T ss_dssp GCTTCCEEECCSSCCC-CCG-G-GTTCSSCCEEECCSS-CCSC-CTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEEC
T ss_pred hCCCCCEEECCCCccC-CCh-h-hccCCCCCEEECCCC-ccCC-cCccccCcccEEEccCCccCCChhhcCcccccEEEC
Confidence 3444555555555555 444 2 455555555555555 4443 222 2444445555555
Q ss_pred CCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCc
Q 046655 141 PSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSND 192 (194)
Q Consensus 141 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ 192 (194)
++|++++ +| .+..+++|+.|++++|++++. ..+..+++|+.|++++|+
T Consensus 136 s~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 136 RNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred CCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 5555542 22 344445555555555555532 334445555555555544
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=1.2e-12 Score=101.41 Aligned_cols=82 Identities=22% Similarity=0.334 Sum_probs=68.3
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 162 (194)
..|+.+++++|+++ .++ .+..+++|++|++++| .+++ ++ .+..+++|+.|++++|++++. ..+..+++|+.|
T Consensus 106 ~~L~~L~L~~N~l~-~~~--~l~~l~~L~~L~Ls~N-~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L 177 (263)
T 1xeu_A 106 ACLSRLFLDNNELR-DTD--SLIHLKNLEILSIRNN-KLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWI 177 (263)
T ss_dssp SSCCEEECCSSCCS-BSG--GGTTCTTCCEEECTTS-CCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEE
T ss_pred CcccEEEccCCccC-CCh--hhcCcccccEEECCCC-cCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEE
Confidence 45555667777776 454 4788999999999999 8885 44 688999999999999999965 678899999999
Q ss_pred ecccCccCCC
Q 046655 163 DLSDNYLSGY 172 (194)
Q Consensus 163 ~L~~N~l~g~ 172 (194)
++++|.+++.
T Consensus 178 ~l~~N~~~~~ 187 (263)
T 1xeu_A 178 DLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEECC
T ss_pred eCCCCcccCC
Confidence 9999999954
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=5.6e-13 Score=105.81 Aligned_cols=108 Identities=21% Similarity=0.257 Sum_probs=83.6
Q ss_pred eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccc-cCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655 82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLV 160 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 160 (194)
...|+.+++++|++++ ++...+..+++|++|++++| .+++..+..+ ..+++|++|++++|.+++. |. ...+++|+
T Consensus 119 ~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~ 194 (317)
T 3o53_A 119 GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLK 194 (317)
T ss_dssp CSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCC
T ss_pred cCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCC
Confidence 3456667788888884 44357778888999999998 7777666665 3688899999999998854 33 33588999
Q ss_pred eeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
.|++++|++++ +|..+..+++|++|++++|+++
T Consensus 195 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred EEECCCCcCCc-chhhhcccCcccEEECcCCccc
Confidence 99999999994 5666888999999999999874
No 108
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=1.5e-12 Score=103.05 Aligned_cols=105 Identities=22% Similarity=0.371 Sum_probs=68.7
Q ss_pred CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655 79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN 158 (194)
Q Consensus 79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 158 (194)
...+..|+.+++++|++. .++ .+..+++|++|++++| .+++. +. +..+++|++|++++|++++ ++. +..+++
T Consensus 103 ~~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n-~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~ 174 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQIT-DVT--PLAGLSNLQVLYLDLN-QITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSK 174 (308)
T ss_dssp GTTCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECCSS-CCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTT
T ss_pred hcCCCCCCEEECCCCCCC-Cch--hhcCCCCCCEEECCCC-ccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCC
Confidence 445666777777888777 455 2677777777777777 66643 32 6677777777777777763 333 666667
Q ss_pred cceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
|+.|++++|++++ ++. +..+++|++|++++|++
T Consensus 175 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 175 LTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCC
T ss_pred CCEEECCCCccCc-Chh-hcCCCCCCEEEccCCcc
Confidence 7777777777663 333 56666666666666655
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=2e-12 Score=101.59 Aligned_cols=106 Identities=23% Similarity=0.362 Sum_probs=91.2
Q ss_pred CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655 79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN 158 (194)
Q Consensus 79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 158 (194)
...+..|+.+++++|+++ .++ . +..+++|++|++++| .+++ + +.+..+++|++|++++|++.+ + +.+..+++
T Consensus 64 ~~~l~~L~~L~L~~n~l~-~~~-~-l~~l~~L~~L~l~~n-~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~ 135 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLT-DIK-P-LANLKNLGWLFLDEN-KVKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ 135 (291)
T ss_dssp GGGCTTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSS-CCCC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTT
T ss_pred HhcCCCCCEEEccCCccC-CCc-c-cccCCCCCEEECCCC-cCCC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCC
Confidence 455677888999999999 666 3 889999999999999 7775 3 448999999999999999985 3 56889999
Q ss_pred cceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
|+.|++++|++++. ..+..+++|++|++++|.++
T Consensus 136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 99999999999964 57889999999999999874
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=1.7e-12 Score=111.75 Aligned_cols=103 Identities=30% Similarity=0.484 Sum_probs=51.3
Q ss_pred CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655 81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV 160 (194)
Q Consensus 81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 160 (194)
.+..|+.|++++|++. .++ .+..+++|++|++++| .+.+ + +.+..+++|+.|+|++|++++. ..+..+++|+
T Consensus 85 ~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N-~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 156 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIK-DLS--SLKDLKKLKSLSLEHN-GISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 156 (605)
T ss_dssp GCTTCCEEECCSSCCC-CCT--TSTTCTTCCEEECTTS-CCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS
T ss_pred cCCCCCEEECcCCCCC-CCh--hhccCCCCCEEEecCC-CCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCC
Confidence 3444444555555554 333 3445555555555555 4443 2 2345555555555555555532 3445555555
Q ss_pred eeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
.|+|++|++++..| +..+++|+.|+|++|.|
T Consensus 157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55555555553322 45555555555555544
No 111
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.36 E-value=1.9e-12 Score=103.56 Aligned_cols=107 Identities=25% Similarity=0.339 Sum_probs=89.9
Q ss_pred CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655 80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL 159 (194)
Q Consensus 80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 159 (194)
....+|+.+++++|+++ .++ . +..+++|++|++++| .+++ + +.+..+++|++|++++|++.+ + +.+..+++|
T Consensus 218 ~~~~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~l~~n-~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L 289 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKIT-DLS-P-LANLSQLTWLEIGTN-QISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQL 289 (347)
T ss_dssp GGCTTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSS-CCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTC
T ss_pred hcCCcCCEEEccCCccC-CCc-c-hhcCCCCCEEECCCC-ccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCC
Confidence 44566777888999888 666 3 788999999999999 7774 3 568889999999999999985 3 458889999
Q ss_pred ceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+.|++++|++++..|..+..+++|++|++++|+++
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 99999999999888888999999999999999874
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=2.9e-12 Score=110.30 Aligned_cols=106 Identities=25% Similarity=0.434 Sum_probs=93.1
Q ss_pred CCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc
Q 046655 78 SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR 157 (194)
Q Consensus 78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 157 (194)
....+..|+.|++++|++. .++ .+..+++|+.|++++| .+++. ..+..+++|+.|+|++|.+.+..| +..++
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~ 175 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT 175 (605)
T ss_dssp TSTTCTTCCEEECTTSCCC-CCG--GGGGCTTCSEEECCSS-CCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred hhccCCCCCEEEecCCCCC-CCc--cccCCCccCEEECCCC-ccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCC
Confidence 4567788888999999999 565 5889999999999999 88864 678999999999999999996655 89999
Q ss_pred ccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 158 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+|+.|+|++|++++ +| .+..+++|+.|++++|++
T Consensus 176 ~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 176 KLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp TCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEE
T ss_pred CCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcC
Confidence 99999999999995 44 689999999999999975
No 113
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=6.3e-12 Score=91.60 Aligned_cols=87 Identities=24% Similarity=0.291 Sum_probs=75.1
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 162 (194)
..++.+++++|++.+..| ..|..+++|++|++++| .+++..+..|..+++|++|+|++|++++..+..|..+++|++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence 557779999999994445 78999999999999999 8997555567899999999999999995544559999999999
Q ss_pred ecccCccCC
Q 046655 163 DLSDNYLSG 171 (194)
Q Consensus 163 ~L~~N~l~g 171 (194)
++++|.++.
T Consensus 111 ~L~~N~~~c 119 (174)
T 2r9u_A 111 YLYNNPWDC 119 (174)
T ss_dssp ECCSSCBCT
T ss_pred EeCCCCccc
Confidence 999999984
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=8.7e-12 Score=106.60 Aligned_cols=95 Identities=19% Similarity=0.291 Sum_probs=60.3
Q ss_pred eeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc-----
Q 046655 85 VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL----- 159 (194)
Q Consensus 85 l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L----- 159 (194)
|+.+++++|+++ .+| . .+++|++|++++| .+++ +|. |. ++|+.|+|++|+++ .+|. +.. +|
T Consensus 142 L~~L~Ls~N~l~-~lp-~---~l~~L~~L~Ls~N-~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~ 207 (571)
T 3cvr_A 142 LEYINADNNQLT-MLP-E---LPTSLEVLSVRNN-QLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEE 207 (571)
T ss_dssp CCEEECCSSCCS-CCC-C---CCTTCCEEECCSS-CCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------
T ss_pred ccEEeCCCCccC-cCC-C---cCCCcCEEECCCC-CCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccc
Confidence 333444444444 244 2 3455666666666 5554 555 44 66777777777777 5665 443 56
Q ss_pred --ceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 160 --VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 160 --~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 208 ~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred cceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 88888888888 57887777888888888888774
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.28 E-value=1.4e-11 Score=102.69 Aligned_cols=102 Identities=20% Similarity=0.317 Sum_probs=46.4
Q ss_pred eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655 82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 161 (194)
..+|+.+++++|++. .++ . +..+++|++|++++| .+.+. +. +..+++|+.|++++|++.+..| +..+++|+.
T Consensus 264 l~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~L~~n-~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 264 LTKLTELKLGANQIS-NIS-P-LAGLTALTNLELNEN-QLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp CTTCSEEECCSSCCC-CCG-G-GTTCTTCSEEECCSS-CCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred CCCCCEEECCCCccC-ccc-c-ccCCCccCeEEcCCC-cccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 334444444555544 333 1 444455555555555 44432 11 4445555555555555543322 344444444
Q ss_pred eecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 162 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
|++++|++++. ..+..+++|+.|++++|++
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence 44444444432 2344444555555554443
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=4.3e-12 Score=108.46 Aligned_cols=74 Identities=27% Similarity=0.383 Sum_probs=37.8
Q ss_pred CCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeE
Q 046655 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEIL 186 (194)
Q Consensus 107 l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L 186 (194)
+++|++|++++| .+++ +|. +.. +|++|++++|++++ +|. .+++|+.|++++|++++ +|. .+++|++|
T Consensus 99 l~~L~~L~Ls~N-~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L 165 (571)
T 3cvr_A 99 PASLEYLDACDN-RLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVL 165 (571)
T ss_dssp CTTCCEEECCSS-CCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred cCCCCEEEccCC-CCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEE
Confidence 344555555555 4443 444 332 55555555555553 443 34555555566555553 444 34555566
Q ss_pred eccCCcC
Q 046655 187 NLSSNDL 193 (194)
Q Consensus 187 ~ls~N~l 193 (194)
++++|+|
T Consensus 166 ~Ls~N~L 172 (571)
T 3cvr_A 166 SVRNNQL 172 (571)
T ss_dssp ECCSSCC
T ss_pred ECCCCCC
Confidence 6665554
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=2.2e-14 Score=106.61 Aligned_cols=107 Identities=25% Similarity=0.328 Sum_probs=90.9
Q ss_pred CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655 79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN 158 (194)
Q Consensus 79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 158 (194)
.+.+..|+.+++++|++. .+| .+..+++|++|++++| .++ .+|..+..+++|++|++++|++++ +| .+..+++
T Consensus 44 ~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n-~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRN-LIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEE-EEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCC-Ccc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 445667888889999998 577 6788999999999999 777 578877788999999999999985 45 6888999
Q ss_pred cceeecccCccCCCCc--cccCCCCCCCeEeccCCcC
Q 046655 159 LVHLDLSDNYLSGYIP--PTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 159 L~~L~L~~N~l~g~~p--~~~~~l~~L~~L~ls~N~l 193 (194)
|++|++++|++++ ++ ..+..+++|++|++++|++
T Consensus 117 L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 117 LRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcc
Confidence 9999999999994 44 3688999999999999975
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.27 E-value=7.8e-12 Score=104.14 Aligned_cols=105 Identities=19% Similarity=0.323 Sum_probs=91.3
Q ss_pred CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655 79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN 158 (194)
Q Consensus 79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 158 (194)
...++.|+.+++++|++. .++ . +..+++|++|++++| .+++..| +..+++|++|++++|++++. ..+..+++
T Consensus 283 ~~~l~~L~~L~L~~n~l~-~~~-~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 354 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLE-DIS-P-ISNLKNLTYLTLYFN-NISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN 354 (466)
T ss_dssp GTTCTTCSEEECCSSCCS-CCG-G-GGGCTTCSEEECCSS-CCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred ccCCCccCeEEcCCCccc-Cch-h-hcCCCCCCEEECcCC-cCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC
Confidence 456677888999999999 555 2 788999999999999 8886544 78999999999999999964 57889999
Q ss_pred cceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
|+.|++++|++++..| +..+++|+.|++++|++
T Consensus 355 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred CCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 9999999999998766 89999999999999975
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=3.7e-14 Score=105.31 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=78.1
Q ss_pred ccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCC
Q 046655 103 KFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSK 182 (194)
Q Consensus 103 ~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~ 182 (194)
.+..+++|++|++++| .+++ +| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCC-CCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 7888999999999999 8886 67 8899999999999999999 788888888999999999999995 56 6888999
Q ss_pred CCeEeccCCcCC
Q 046655 183 LEILNLSSNDLY 194 (194)
Q Consensus 183 L~~L~ls~N~ls 194 (194)
|++|++++|+++
T Consensus 117 L~~L~l~~N~i~ 128 (198)
T 1ds9_A 117 LRVLYMSNNKIT 128 (198)
T ss_dssp SSEEEESEEECC
T ss_pred CCEEECCCCcCC
Confidence 999999999874
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.24 E-value=1.2e-11 Score=103.19 Aligned_cols=109 Identities=23% Similarity=0.292 Sum_probs=82.3
Q ss_pred CcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccc
Q 046655 68 HCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG 147 (194)
Q Consensus 68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 147 (194)
.|.+.++. ..+.++.|+.+++++|+++ .+| +..+++|++|++++| .+++ ++ ++.+++|++|++++|++++
T Consensus 51 ~n~l~~~~--~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N-~l~~-~~--~~~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 51 NSSITDMT--GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSN-KLTN-LD--VTPLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp SSCCCCCT--TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSS-CCSC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred CCCcccCh--hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCC-CCce-ee--cCCCCcCCEEECCCCcCCe
Confidence 34455542 3456677777888888888 454 677888888888888 7775 33 7788888888888888885
Q ss_pred cCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCc
Q 046655 148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSND 192 (194)
Q Consensus 148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ 192 (194)
+| ++.+++|++|++++|++++ ++ ++++++|++|++++|+
T Consensus 121 -l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 121 -LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp -CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCS
T ss_pred -ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCC
Confidence 44 7788888888888888886 43 7788888888888883
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.23 E-value=6.1e-11 Score=98.80 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=43.2
Q ss_pred CCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCC
Q 046655 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLE 184 (194)
Q Consensus 105 ~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~ 184 (194)
..+++|++|++++| .+++ +| +..+++|+.|++++|++++. .++.+++|+.|++++|++++ +| ++.+++|+
T Consensus 167 ~~l~~L~~L~ls~n-~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 167 TPQTQLTTLDCSFN-KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT 236 (457)
T ss_dssp TTCTTCCEEECCSS-CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred ccCCcCCEEECCCC-ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence 34445555555555 4443 23 44555555555555555532 25555666666666666664 44 55666666
Q ss_pred eEeccCCcC
Q 046655 185 ILNLSSNDL 193 (194)
Q Consensus 185 ~L~ls~N~l 193 (194)
+|++++|++
T Consensus 237 ~L~l~~N~l 245 (457)
T 3bz5_A 237 YFDCSVNPL 245 (457)
T ss_dssp EEECCSSCC
T ss_pred EEEeeCCcC
Confidence 666666654
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.22 E-value=1.4e-12 Score=103.86 Aligned_cols=109 Identities=22% Similarity=0.195 Sum_probs=60.2
Q ss_pred CeeeeeeeeccCCccccc-cCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCC-ccccc-CchhhccCc
Q 046655 81 SVIGVSLLWYENDNITGE-LGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSS-SLTGI-IPLEMGRLR 157 (194)
Q Consensus 81 ~~~~l~~l~l~~n~l~~~-lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~ 157 (194)
...+|+.+++++|.+.+. ++ ..+..+++|++|++++| .+++..+..++.+++|++|++++| .+++. ++..+..++
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred cCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 345555566666665543 44 44555666666666666 555445555555666666666666 45432 444455555
Q ss_pred ccceeecccC-ccCCC-CccccCCCC-CCCeEeccCC
Q 046655 158 NLVHLDLSDN-YLSGY-IPPTLGRLS-KLEILNLSSN 191 (194)
Q Consensus 158 ~L~~L~L~~N-~l~g~-~p~~~~~l~-~L~~L~ls~N 191 (194)
+|++|++++| .+++. ++..+..++ +|++|++++|
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 6666666665 55532 344455555 5555555555
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.22 E-value=1.6e-11 Score=98.80 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=87.0
Q ss_pred CCcccccceeCCC--CCe-----eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCC-ccccCCCCCCE-
Q 046655 67 YHCKWTGVSCNSA--GSV-----IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIP-SEIAAVSMLQT- 137 (194)
Q Consensus 67 ~~c~~~gv~c~~~--~~~-----~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p-~~~~~l~~L~~- 137 (194)
..|.+..|.|... ..+ +.++.|++++|+|+ .+|...|..+++|++|++++| .+.+.+| ..|.+++++++
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhh
Confidence 3477888888631 111 34666889999999 888667899999999999999 7655555 45778888775
Q ss_pred eecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEec
Q 046655 138 LELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNL 188 (194)
Q Consensus 138 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~l 188 (194)
+.+..|++....|..|..+++|+++++++|++++..+..+....++..+++
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 566778998777788899999999999999988544433333333444444
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.20 E-value=2.9e-12 Score=101.91 Aligned_cols=109 Identities=24% Similarity=0.247 Sum_probs=92.6
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCccc-CCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGS-IPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 161 (194)
..++.+++++|.+.+..+ .+..+++|++|++++| .+++. ++..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCC--SCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCccccccch--hhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 456667889999986555 4667899999999999 77755 7778889999999999999999888889999999999
Q ss_pred eecccC-ccCC-CCccccCCCCCCCeEeccCC-cCC
Q 046655 162 LDLSDN-YLSG-YIPPTLGRLSKLEILNLSSN-DLY 194 (194)
Q Consensus 162 L~L~~N-~l~g-~~p~~~~~l~~L~~L~ls~N-~ls 194 (194)
|++++| .+++ .++..+..+++|++|++++| .++
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 999999 6875 36777888999999999999 663
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.18 E-value=3.2e-12 Score=103.93 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=66.5
Q ss_pred eeeeeeccCCccccc----cCccccCCCCCccEEEecCCCCCc----ccCCccccCCCCCCEeecCCCccccc----Cch
Q 046655 84 GVSLLWYENDNITGE----LGRFKFSCFPNLKSFKIHSNYLLS----GSIPSEIAAVSMLQTLELPSSSLTGI----IPL 151 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~----lp~~~~~~l~~L~~L~l~~n~~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~----~p~ 151 (194)
.|+.+++++|++... +.+..+..+++|++|++++| .++ +.+|..+..+++|++|+|++|.+++. +|.
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 455555666665521 11024556666777777777 554 34556666667777777777776644 344
Q ss_pred hhc--cCcccceeecccCccCC----CCcccc-CCCCCCCeEeccCCcCC
Q 046655 152 EMG--RLRNLVHLDLSDNYLSG----YIPPTL-GRLSKLEILNLSSNDLY 194 (194)
Q Consensus 152 ~~~--~l~~L~~L~L~~N~l~g----~~p~~~-~~l~~L~~L~ls~N~ls 194 (194)
.+. .+++|+.|++++|.+++ .+|..+ .++++|++|++++|+++
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 443 26677777777777775 366655 45677777777777653
No 126
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=5.3e-11 Score=95.32 Aligned_cols=90 Identities=21% Similarity=0.194 Sum_probs=77.5
Q ss_pred CCCeeeeeeeeccC-CccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc
Q 046655 79 AGSVIGVSLLWYEN-DNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR 157 (194)
Q Consensus 79 ~~~~~~l~~l~l~~-n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 157 (194)
.+..++|+.|+|++ |++. .++...|..+++|++|+|++| .+++..|..|..+++|++|+|++|++++..+..+..++
T Consensus 27 l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC
Confidence 56677888899997 9999 666478999999999999999 99998888999999999999999999955445565555
Q ss_pred ccceeecccCccCC
Q 046655 158 NLVHLDLSDNYLSG 171 (194)
Q Consensus 158 ~L~~L~L~~N~l~g 171 (194)
|+.|++.+|.+..
T Consensus 105 -L~~l~l~~N~~~c 117 (347)
T 2ifg_A 105 -LQELVLSGNPLHC 117 (347)
T ss_dssp -CCEEECCSSCCCC
T ss_pred -ceEEEeeCCCccC
Confidence 9999999999984
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.17 E-value=1.4e-10 Score=100.21 Aligned_cols=77 Identities=30% Similarity=0.417 Sum_probs=64.8
Q ss_pred CCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEe
Q 046655 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILN 187 (194)
Q Consensus 108 ~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ 187 (194)
++|++|++++| .+++ +| ..+++|++|++++|+++ .+|. .+++|+.|++++|+++ .+|..+.++++|+.|+
T Consensus 221 ~~L~~L~Ls~N-~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 221 SGLKELIVSGN-RLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 290 (622)
T ss_dssp TTCCEEECCSS-CCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred CCCCEEEccCC-ccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence 66888888888 7774 55 44578899999999988 5666 5688999999999999 7899999999999999
Q ss_pred ccCCcCC
Q 046655 188 LSSNDLY 194 (194)
Q Consensus 188 ls~N~ls 194 (194)
+++|+++
T Consensus 291 L~~N~l~ 297 (622)
T 3g06_A 291 LEGNPLS 297 (622)
T ss_dssp CCSCCCC
T ss_pred ecCCCCC
Confidence 9999874
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.15 E-value=5.8e-12 Score=101.72 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=83.3
Q ss_pred CCccccccee----CCCCCee-eeeeeeccCCccccccCccccCCC-----CCccEEEecCCCCCcccCCcccc----CC
Q 046655 67 YHCKWTGVSC----NSAGSVI-GVSLLWYENDNITGELGRFKFSCF-----PNLKSFKIHSNYLLSGSIPSEIA----AV 132 (194)
Q Consensus 67 ~~c~~~gv~c----~~~~~~~-~l~~l~l~~n~l~~~lp~~~~~~l-----~~L~~L~l~~n~~l~~~~p~~~~----~l 132 (194)
..|.+.+..+ ....... .|+.+++++|++.+..+ ..+..+ +.|++|++++| .+++..+..+. .+
T Consensus 30 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~ 107 (362)
T 3goz_A 30 SLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAI 107 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTS
T ss_pred cCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhC
Confidence 4455555544 3334444 67777888888884444 445443 78888888888 77765554333 33
Q ss_pred -CCCCEeecCCCcccccCchhhcc-----CcccceeecccCccCCC----CccccCCCC-CCCeEeccCCcC
Q 046655 133 -SMLQTLELPSSSLTGIIPLEMGR-----LRNLVHLDLSDNYLSGY----IPPTLGRLS-KLEILNLSSNDL 193 (194)
Q Consensus 133 -~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~N~l~g~----~p~~~~~l~-~L~~L~ls~N~l 193 (194)
++|++|++++|++++..+..+.. .++|++|++++|++++. ++..+..++ +|++|++++|++
T Consensus 108 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 108 PFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred CCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 78888888888888665554433 35888888888888853 333345555 888888888876
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.15 E-value=2.1e-10 Score=95.47 Aligned_cols=98 Identities=22% Similarity=0.293 Sum_probs=50.6
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc------
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR------ 157 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~------ 157 (194)
.|+.+++++|+++ .+| .+..+++|++|++++| .+++ +|..+ .+|++|++++|++.+ +| .++.++
T Consensus 132 ~L~~L~L~~n~l~-~lp--~~~~l~~L~~L~l~~N-~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 132 LLEYLGVSNNQLE-KLP--ELQNSSFLKIIDVDNN-SLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSS-CCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCEEECcCCCCC-CCc--ccCCCCCCCEEECCCC-cCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 4555566666666 355 2556666666666666 5543 33321 244444444444442 23 233333
Q ss_pred --------------ccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655 158 --------------NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 158 --------------~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
+|+.|++++|+++ .+|. ++.+++|++|++++|++
T Consensus 202 l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 202 ADNNSLKKLPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLL 249 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred CCCCcCCcCCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcC
Confidence 4444444444444 4453 66666777777776655
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.13 E-value=7.7e-11 Score=94.73 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=84.4
Q ss_pred eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCch-hhccCcccce-eecc
Q 046655 88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL-EMGRLRNLVH-LDLS 165 (194)
Q Consensus 88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~-L~L~ 165 (194)
++-++++++ ++| ..+ .+++++|++++| .++...+..|.++++|++|+|++|++.+.+|. .|.++++++. +.+.
T Consensus 14 v~C~~~~Lt-~iP-~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 14 FLCQESKVT-EIP-SDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEESTTCC-SCC-TTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEecCCCCC-ccC-cCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 556788888 898 444 368999999999 88865455799999999999999999766665 5788888765 6667
Q ss_pred cCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 166 DNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 166 ~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
.|++++..|..|..+++|++|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred CCcccccCchhhhhccccccccccccccc
Confidence 89999777888999999999999999864
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=1.6e-11 Score=99.13 Aligned_cols=112 Identities=22% Similarity=0.245 Sum_probs=87.6
Q ss_pred CeeeeeeeeccCCccccccCc----cccCCCC-CccEEEecCCCCCcccCCccccCC-----CCCCEeecCCCcccccCc
Q 046655 81 SVIGVSLLWYENDNITGELGR----FKFSCFP-NLKSFKIHSNYLLSGSIPSEIAAV-----SMLQTLELPSSSLTGIIP 150 (194)
Q Consensus 81 ~~~~l~~l~l~~n~l~~~lp~----~~~~~l~-~L~~L~l~~n~~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p 150 (194)
....|+.+++++|++. ..+. ..+..++ +|++|++++| .+.+..+..+..+ ++|++|++++|.+++..+
T Consensus 20 ~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp SCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3344777888999988 5553 3566787 8999999999 8887767777765 899999999999997777
Q ss_pred hhhcc----C-cccceeecccCccCCCCccc----cCC-CCCCCeEeccCCcCC
Q 046655 151 LEMGR----L-RNLVHLDLSDNYLSGYIPPT----LGR-LSKLEILNLSSNDLY 194 (194)
Q Consensus 151 ~~~~~----l-~~L~~L~L~~N~l~g~~p~~----~~~-l~~L~~L~ls~N~ls 194 (194)
..+.. + ++|+.|++++|++++..+.. +.. .++|++|++++|.++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 65444 3 89999999999999665544 334 369999999999863
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.09 E-value=1.9e-11 Score=99.37 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=64.8
Q ss_pred CeeeeeeeeccCCcccc----ccCccccCCCCCccEEEecCCCCCcccCCcccc----CC---------CCCCEeecCCC
Q 046655 81 SVIGVSLLWYENDNITG----ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIA----AV---------SMLQTLELPSS 143 (194)
Q Consensus 81 ~~~~l~~l~l~~n~l~~----~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~----~l---------~~L~~L~L~~n 143 (194)
..+.|+.+++++|.+.+ .++ ..+..+++|++|++++| .+....+..+. .+ ++|++|++++|
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLI-DFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHH-HHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred hCCcccEEECCCCcCCHHHHHHHH-HHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 34555556666666664 244 45556666666666666 55432222222 22 66777777777
Q ss_pred ccc-ccCc---hhhccCcccceeecccCccC--C---CCccccCCCCCCCeEeccCCcC
Q 046655 144 SLT-GIIP---LEMGRLRNLVHLDLSDNYLS--G---YIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 144 ~l~-~~~p---~~~~~l~~L~~L~L~~N~l~--g---~~p~~~~~l~~L~~L~ls~N~l 193 (194)
++. +.+| ..+..+++|+.|++++|+++ | ..|..+.++++|++|++++|.+
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 665 2333 34556667777777777766 2 2333566677777777777765
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.08 E-value=5.9e-11 Score=102.47 Aligned_cols=94 Identities=28% Similarity=0.345 Sum_probs=62.9
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 162 (194)
..|+.+++++|+++ .+| . .+++|++|++++| .++ .+|. .+++|++|++++|+++ .+|. .+++|+.|
T Consensus 61 ~~L~~L~L~~N~l~-~lp-~---~l~~L~~L~Ls~N-~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLP-A---LPPELRTLEVSGN-QLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCS-CCC-C---CCTTCCEEEECSC-CCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCCC-CCC-C---cCCCCCEEEcCCC-cCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEE
Confidence 34555666777777 666 2 4567777777777 665 3554 5677777777777777 3444 45677777
Q ss_pred ecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 163 ~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++++|+++ .+|.. +++|++|++++|+++
T Consensus 127 ~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 127 WIFGNQLT-SLPVL---PPGLQELSVSDNQLA 154 (622)
T ss_dssp ECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred ECCCCCCC-cCCCC---CCCCCEEECcCCcCC
Confidence 77777777 35553 367888888887653
No 134
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.08 E-value=4.2e-10 Score=93.64 Aligned_cols=98 Identities=24% Similarity=0.354 Sum_probs=76.4
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 162 (194)
..|+.+++++|+++ .++ .. .++|++|++++| .+++ +| .++.+++|++|++++|++++ +|..+ .+|++|
T Consensus 111 ~~L~~L~l~~n~l~-~l~-~~---~~~L~~L~L~~n-~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLK-ALS-DL---PPLLEYLGVSNN-QLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCS-CCC-SC---CTTCCEEECCSS-CCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEE
T ss_pred CCCcEEECCCCccC-ccc-CC---CCCCCEEECcCC-CCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEE
Confidence 45556666777766 454 11 268899999999 7885 77 58899999999999999984 66543 589999
Q ss_pred ecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 163 ~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++++|++++ +| .++++++|++|++++|.++
T Consensus 179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 999999996 67 5889999999999998763
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.98 E-value=2.6e-11 Score=100.28 Aligned_cols=86 Identities=26% Similarity=0.183 Sum_probs=57.9
Q ss_pred CCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCcccccCchhhcc-----CcccceeecccCccCC----CCc
Q 046655 108 PNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGIIPLEMGR-----LRNLVHLDLSDNYLSG----YIP 174 (194)
Q Consensus 108 ~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~N~l~g----~~p 174 (194)
+.|++|++++| .+++. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|++++ .+|
T Consensus 313 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 313 CQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp CCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred ccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 35555555555 44432 2344555677888888888777554444432 5688888888888875 677
Q ss_pred cccCCCCCCCeEeccCCcCC
Q 046655 175 PTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 175 ~~~~~l~~L~~L~ls~N~ls 194 (194)
..+..+++|++|++++|+|+
T Consensus 392 ~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHCCCCCEEECCSSSCC
T ss_pred HHHHhCCCccEEECCCCCCC
Confidence 77777888888888888764
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.89 E-value=9.4e-11 Score=96.95 Aligned_cols=109 Identities=24% Similarity=0.227 Sum_probs=55.0
Q ss_pred eeeeeeeccCCccccc----cCccccCCCCCccEEEecCCCCCcccCCccccC-----CCCCCEeecCCCccccc----C
Q 046655 83 IGVSLLWYENDNITGE----LGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAA-----VSMLQTLELPSSSLTGI----I 149 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~----lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~----~ 149 (194)
..|+.+++++|++++. ++ ..+..+++|++|++++| .+....+..+.. .++|++|++++|.+++. +
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHH-HHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHH-HHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 3444455555555421 33 33444555555555555 443222222221 14566666666665543 3
Q ss_pred chhhccCcccceeecccCccCCCCccccC----C-CCCCCeEeccCCcC
Q 046655 150 PLEMGRLRNLVHLDLSDNYLSGYIPPTLG----R-LSKLEILNLSSNDL 193 (194)
Q Consensus 150 p~~~~~l~~L~~L~L~~N~l~g~~p~~~~----~-l~~L~~L~ls~N~l 193 (194)
+..+..+++|+.|++++|++++..+..+. . .++|++|++++|++
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 44455566666677766666643333222 1 45677777777665
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.85 E-value=2.1e-10 Score=89.02 Aligned_cols=79 Identities=25% Similarity=0.324 Sum_probs=51.9
Q ss_pred CCCCccEEEecCCCCCcc--cCCccccCCCCCCEeecCCCcccccCchhhccCc--ccceeecccCccCCCCcc------
Q 046655 106 CFPNLKSFKIHSNYLLSG--SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR--NLVHLDLSDNYLSGYIPP------ 175 (194)
Q Consensus 106 ~l~~L~~L~l~~n~~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~g~~p~------ 175 (194)
.++.|++|+|++| .+++ .+|..+..+++|+.|+|++|++.+. ..+..+. .|+.|+|++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4567777777777 6665 3445556777777777777777743 3334443 777777777777765552
Q ss_pred -ccCCCCCCCeEe
Q 046655 176 -TLGRLSKLEILN 187 (194)
Q Consensus 176 -~~~~l~~L~~L~ 187 (194)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 255677777766
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.80 E-value=6.7e-10 Score=90.22 Aligned_cols=110 Identities=17% Similarity=0.212 Sum_probs=72.6
Q ss_pred eeeeeeeccCCccccccCcccc-----CCCCCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCccccc----C
Q 046655 83 IGVSLLWYENDNITGELGRFKF-----SCFPNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGI----I 149 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~-----~~l~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~ 149 (194)
.+++.+++++|+++..-. ..+ ...+.|++|++++| .++.. ++..+...++|++|+|++|.+.+. +
T Consensus 126 ~~L~~L~Ls~n~l~~~~~-~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEAC-KDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp HTEEEEECCSSCCCHHHH-HHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHH-HHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence 345567777777653211 222 24567888888888 66531 333345677888888888888743 2
Q ss_pred chhhccCcccceeecccCccCC----CCccccCCCCCCCeEeccCCcCC
Q 046655 150 PLEMGRLRNLVHLDLSDNYLSG----YIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 150 p~~~~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
+..+...++|+.|++++|.++. .+...+...++|++|++++|.|+
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 4556677788888888888874 23344556688888888888774
No 139
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.73 E-value=8.1e-09 Score=80.11 Aligned_cols=87 Identities=26% Similarity=0.292 Sum_probs=63.4
Q ss_pred cCCCCCccE--EEecCCCCCcccCCcc----ccCCCCCCEeecCCCcccc--cCchhhccCcccceeecccCccCCCCcc
Q 046655 104 FSCFPNLKS--FKIHSNYLLSGSIPSE----IAAVSMLQTLELPSSSLTG--IIPLEMGRLRNLVHLDLSDNYLSGYIPP 175 (194)
Q Consensus 104 ~~~l~~L~~--L~l~~n~~l~~~~p~~----~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~g~~p~ 175 (194)
+...+.|+. ++++.| ... .++.. ...+++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. .
T Consensus 137 l~~dp~L~~~~l~l~~N-~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~ 212 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLN-RRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--R 212 (267)
T ss_dssp GGGCHHHHHTTCCCCTT-SHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--G
T ss_pred cCCCcchhhcCccccCC-HHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--h
Confidence 444455555 666777 422 22221 2457899999999999997 4567788999999999999999964 3
Q ss_pred ccCCCC--CCCeEeccCCcCC
Q 046655 176 TLGRLS--KLEILNLSSNDLY 194 (194)
Q Consensus 176 ~~~~l~--~L~~L~ls~N~ls 194 (194)
.+..+. +|++|++++|+++
T Consensus 213 ~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 213 ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp GGGGGTTSCCSEEECTTSTTG
T ss_pred hhhhcccCCcceEEccCCcCc
Confidence 344444 9999999999873
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=3.5e-08 Score=78.42 Aligned_cols=103 Identities=20% Similarity=0.137 Sum_probs=86.5
Q ss_pred eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCC-EeecCCCcccccCchhhccCcccc
Q 046655 82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQ-TLELPSSSLTGIIPLEMGRLRNLV 160 (194)
Q Consensus 82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~ 160 (194)
..+|+.+++++|+++ .++...|..+++|+.+++..| ++..-+..|.++.+|+ .+++.+ .+...-+..|.++++|+
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 356777888999998 898788999999999999998 5545667799999999 999988 77755567899999999
Q ss_pred eeecccCccCCCCccccCCCCCCCeEec
Q 046655 161 HLDLSDNYLSGYIPPTLGRLSKLEILNL 188 (194)
Q Consensus 161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~l 188 (194)
.+++++|+++..-+..|.++++|+.++.
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999999655667999999998874
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=1.5e-09 Score=88.18 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=80.9
Q ss_pred eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccc-----cCCCCCCEeecCCCccccc----Cchhh
Q 046655 83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-----AAVSMLQTLELPSSSLTGI----IPLEM 153 (194)
Q Consensus 83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~p~~~ 153 (194)
..|+.+++++|++...-...-...+++|++|++++| .+...-...+ ...++|++|+|++|.++.. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 567788889998874322111224568999999999 7764322333 2357899999999999742 44455
Q ss_pred ccCcccceeecccCccCC----CCccccCCCCCCCeEeccCCcCC
Q 046655 154 GRLRNLVHLDLSDNYLSG----YIPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 154 ~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~ls 194 (194)
...++|++|+|++|.++. .++..+...++|+.|++++|.|+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 778999999999999884 23556777889999999999874
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=2.2e-07 Score=73.82 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=59.1
Q ss_pred CCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc-eeecccCccCCCCccccCCCCCCCe
Q 046655 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV-HLDLSDNYLSGYIPPTLGRLSKLEI 185 (194)
Q Consensus 107 l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~L~~N~l~g~~p~~~~~l~~L~~ 185 (194)
++.|+++++++| .++..-+..|.++++|+.+++.+| +...-+..|.++++|+ .+++.+ +++..-+..|..+++|+.
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 456777777777 666555556777778888888777 6534445577788887 888776 566444566788888888
Q ss_pred EeccCCcC
Q 046655 186 LNLSSNDL 193 (194)
Q Consensus 186 L~ls~N~l 193 (194)
++++.|.+
T Consensus 302 l~l~~n~i 309 (329)
T 3sb4_A 302 VLATGDKI 309 (329)
T ss_dssp EEECSSCC
T ss_pred EEeCCCcc
Confidence 88877765
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.51 E-value=7.8e-09 Score=87.97 Aligned_cols=91 Identities=15% Similarity=0.038 Sum_probs=58.9
Q ss_pred cCCCCCccEEEecCCC-CCcccCCcccc-CCCCCCEeecCCCcccc-cCchhhccCcccceeecccCccCCC-CccccCC
Q 046655 104 FSCFPNLKSFKIHSNY-LLSGSIPSEIA-AVSMLQTLELPSSSLTG-IIPLEMGRLRNLVHLDLSDNYLSGY-IPPTLGR 179 (194)
Q Consensus 104 ~~~l~~L~~L~l~~n~-~l~~~~p~~~~-~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~g~-~p~~~~~ 179 (194)
+..+++|++|+++.+. .+++.....+. .+++|++|++++|++++ .++..+..+++|+.|++++|.+++. ++..+..
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 3446667777775431 13322222232 36778888888888775 3445567788888888888887643 3444557
Q ss_pred CCCCCeEeccCCcCC
Q 046655 180 LSKLEILNLSSNDLY 194 (194)
Q Consensus 180 l~~L~~L~ls~N~ls 194 (194)
+++|++|++++|+++
T Consensus 512 l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 512 LPSLRYLWVQGYRAS 526 (592)
T ss_dssp CSSCCEEEEESCBCC
T ss_pred cCccCeeECcCCcCC
Confidence 788888888888764
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=1.8e-08 Score=73.86 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=80.4
Q ss_pred eeeeeeeeccCC-cccc----ccCccccCCCCCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCccccc----
Q 046655 82 VIGVSLLWYEND-NITG----ELGRFKFSCFPNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGI---- 148 (194)
Q Consensus 82 ~~~l~~l~l~~n-~l~~----~lp~~~~~~l~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~---- 148 (194)
-..|+.+++++| .+.. .+. ..+...+.|++|++++| .+... +...+...++|++|+|++|.+.+.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 445666777888 7763 233 44566789999999999 66531 233445568899999999999854
Q ss_pred CchhhccCcccceeec--ccCccCCC----CccccCCCCCCCeEeccCCcC
Q 046655 149 IPLEMGRLRNLVHLDL--SDNYLSGY----IPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 149 ~p~~~~~l~~L~~L~L--~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l 193 (194)
+...+...+.|++|++ ++|.+... +...+...++|++|++++|.+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3455677789999999 88999842 334556678999999999975
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.47 E-value=3.3e-08 Score=84.13 Aligned_cols=57 Identities=7% Similarity=-0.019 Sum_probs=25.8
Q ss_pred CCCCccEEEecCCCCCc----ccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeec
Q 046655 106 CFPNLKSFKIHSNYLLS----GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164 (194)
Q Consensus 106 ~l~~L~~L~l~~n~~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 164 (194)
.+++|++|++++| .++ +.++..+..+++|+.|++++|.+.+ +|..+..+++|+.+++
T Consensus 190 ~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 190 HNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCG 250 (592)
T ss_dssp HCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEE
T ss_pred cCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcc
Confidence 3455555555555 443 1222233345555555555555542 3333333444444433
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.13 E-value=1.1e-06 Score=64.26 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=69.8
Q ss_pred cccCCCCCccEEEecCCCCCcc----cCCccccCCCCCCEeecCCCccccc----CchhhccCcccceeecccCccCCC-
Q 046655 102 FKFSCFPNLKSFKIHSNYLLSG----SIPSEIAAVSMLQTLELPSSSLTGI----IPLEMGRLRNLVHLDLSDNYLSGY- 172 (194)
Q Consensus 102 ~~~~~l~~L~~L~l~~n~~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~g~- 172 (194)
..+...+.|++|++++|..+.. .+...+...++|++|+|++|.+... +...+...+.|++|+|++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 4566788999999999822321 1234455678999999999999753 334456668999999999999842
Q ss_pred ---CccccCCCCCCCeEec--cCCcCC
Q 046655 173 ---IPPTLGRLSKLEILNL--SSNDLY 194 (194)
Q Consensus 173 ---~p~~~~~l~~L~~L~l--s~N~ls 194 (194)
+...+...++|++|++ ++|.|+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 4556778889999999 889874
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=5.6e-07 Score=72.78 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=59.0
Q ss_pred CCCCccEEEecCCC-CCccc-----CCccc--cCCCCCCEeecCCCcccccCchhhc---cCcccceeecccCccCCC--
Q 046655 106 CFPNLKSFKIHSNY-LLSGS-----IPSEI--AAVSMLQTLELPSSSLTGIIPLEMG---RLRNLVHLDLSDNYLSGY-- 172 (194)
Q Consensus 106 ~l~~L~~L~l~~n~-~l~~~-----~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~N~l~g~-- 172 (194)
.+++|++|+|+.+. ...+. +...+ ..+++|+.|+|.+|.+.+..+..+. .+++|+.|+|+.|.+++.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 57888888875320 11111 11122 2468899999998888754444443 478899999999988852
Q ss_pred --CccccCCCCCCCeEeccCCcCC
Q 046655 173 --IPPTLGRLSKLEILNLSSNDLY 194 (194)
Q Consensus 173 --~p~~~~~l~~L~~L~ls~N~ls 194 (194)
++..+.++++|+.|++++|.|+
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHhhcccCCcceEEECCCCcCC
Confidence 3444456789999999998874
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.08 E-value=1.7e-07 Score=79.66 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=36.9
Q ss_pred CCCCCEeecCCCcccccCchhh-ccCcccceeecccCccCCCCcc-ccCCCCCCCeEeccCCcC
Q 046655 132 VSMLQTLELPSSSLTGIIPLEM-GRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 132 l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~g~~p~-~~~~l~~L~~L~ls~N~l 193 (194)
+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|+.|++++|++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5666666666666654433333 4567777777777776532222 234466777777777654
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.04 E-value=5.7e-07 Score=76.38 Aligned_cols=107 Identities=19% Similarity=0.153 Sum_probs=57.9
Q ss_pred eeeeeeccCCccccccCccccC-CCCCccEEEecCCCCCccc-CCccccCCCCCCEeecCCCcccccCchhhc----cCc
Q 046655 84 GVSLLWYENDNITGELGRFKFS-CFPNLKSFKIHSNYLLSGS-IPSEIAAVSMLQTLELPSSSLTGIIPLEMG----RLR 157 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~-~l~~L~~L~l~~n~~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l~ 157 (194)
.|+.+++++|.+++..+ ..+. .+++|++|++++|..+... ++..+..+++|++|++++|.+++..+..+. .++
T Consensus 106 ~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCL-ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TCCEEEEESCBCCHHHH-HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCeEEeeCcEEcHHHH-HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 45556667766664444 3333 4667777777776322211 233334567777777777776654443333 445
Q ss_pred ccceeecccCc--cCC-CCccccCCCCCCCeEeccCC
Q 046655 158 NLVHLDLSDNY--LSG-YIPPTLGRLSKLEILNLSSN 191 (194)
Q Consensus 158 ~L~~L~L~~N~--l~g-~~p~~~~~l~~L~~L~ls~N 191 (194)
+|+.|++++|. ++. .++..+.++++|++|++++|
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 67777777665 211 11111234566777777665
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.96 E-value=2.9e-05 Score=63.44 Aligned_cols=96 Identities=14% Similarity=0.206 Sum_probs=60.9
Q ss_pred CccccccCccccCCCCCccEEEecCCCCCc-----ccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccC
Q 046655 93 DNITGELGRFKFSCFPNLKSFKIHSNYLLS-----GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167 (194)
Q Consensus 93 n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~-----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 167 (194)
+++. .++...|..+++|+.+++.+| ... ..-+..|.++++|+.+.+.. .+...-...|.++.+|+.+.+..|
T Consensus 257 ~~i~-~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 257 NGVT-NIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTCC-EECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred CCcc-EEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 3444 555566777778888887776 433 23345677777788777773 455333455777777777777544
Q ss_pred ccCCCCccccCCCCCCCeEeccCCcC
Q 046655 168 YLSGYIPPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 168 ~l~g~~p~~~~~l~~L~~L~ls~N~l 193 (194)
++..-+..|..+ +|+.+++.+|.+
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 553334557777 777777777653
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=5.2e-06 Score=60.23 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=36.1
Q ss_pred eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCC----CCCCEeecCCCc-ccccCchhhccCcc
Q 046655 84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAV----SMLQTLELPSSS-LTGIIPLEMGRLRN 158 (194)
Q Consensus 84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~ 158 (194)
.|+.++++++.++..-- ..+..+++|++|+|++|..++..--..++.+ ++|++|+|+++. +++.--..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 34445555555442211 2344555555555555533332111122222 245555555542 44322223444555
Q ss_pred cceeecccC
Q 046655 159 LVHLDLSDN 167 (194)
Q Consensus 159 L~~L~L~~N 167 (194)
|+.|++++.
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555544
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.72 E-value=0.00015 Score=59.15 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=55.9
Q ss_pred CCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCC--------------
Q 046655 78 SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSS-------------- 143 (194)
Q Consensus 78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n-------------- 143 (194)
++....+|+.+.+.+|+++ .++...|. ...|+.+.+..+ ++..-...|.++++|+.+++..|
T Consensus 175 aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L 250 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGI 250 (401)
T ss_dssp TTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCC
T ss_pred HhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCccccccccCCc
Confidence 3444455555666666555 55544443 355555555533 33333445556666666666543
Q ss_pred -------cccccCchhhccCcccceeecccCccC-----CCCccccCCCCCCCeEecc
Q 046655 144 -------SLTGIIPLEMGRLRNLVHLDLSDNYLS-----GYIPPTLGRLSKLEILNLS 189 (194)
Q Consensus 144 -------~l~~~~p~~~~~l~~L~~L~L~~N~l~-----g~~p~~~~~l~~L~~L~ls 189 (194)
.+...-...|.++++|+.+++.+|.+. ..-+..|..+++|+.+++.
T Consensus 251 ~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 251 TTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp SEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred cEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 122112334556666666666665543 1223446666666666665
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.60 E-value=2.3e-05 Score=56.84 Aligned_cols=84 Identities=8% Similarity=0.115 Sum_probs=62.3
Q ss_pred CCccEEEecCCCCCcccCCccccCCCCCCEeecCCCc-ccccCchhhccC----cccceeecccC-ccCCCCccccCCCC
Q 046655 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSS-LTGIIPLEMGRL----RNLVHLDLSDN-YLSGYIPPTLGRLS 181 (194)
Q Consensus 108 ~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~N-~l~g~~p~~~~~l~ 181 (194)
..|++||++++ .++..--..+..+++|+.|+|+++. +++.--..+..+ ++|++|+++++ +++..=-..+.+++
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 46999999999 6664433556789999999999985 664433445553 47999999997 47732223467899
Q ss_pred CCCeEeccCCc
Q 046655 182 KLEILNLSSND 192 (194)
Q Consensus 182 ~L~~L~ls~N~ 192 (194)
+|++|++++++
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999864
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.55 E-value=0.0001 Score=50.61 Aligned_cols=57 Identities=21% Similarity=0.199 Sum_probs=39.2
Q ss_pred cEEEecCCCCCc-ccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccC
Q 046655 111 KSFKIHSNYLLS-GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLS 170 (194)
Q Consensus 111 ~~L~l~~n~~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 170 (194)
..++.+++ .++ ..+|..+. .+|++|+|++|+++..-+..|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777 665 24565432 46888888888888444455777888888888888765
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.53 E-value=2.7e-05 Score=62.83 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=20.6
Q ss_pred CcccceeecccCccCCCCcccc---CCCCCCCeEeccCCcC
Q 046655 156 LRNLVHLDLSDNYLSGYIPPTL---GRLSKLEILNLSSNDL 193 (194)
Q Consensus 156 l~~L~~L~L~~N~l~g~~p~~~---~~l~~L~~L~ls~N~l 193 (194)
+++|++|++.+|.+....+..+ ..+++|++|+|+.|.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 4566666666665553222221 2356667777766654
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.21 E-value=0.00078 Score=46.16 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=40.2
Q ss_pred eccCCccc-cccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655 89 WYENDNIT-GELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146 (194)
Q Consensus 89 ~l~~n~l~-~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~ 146 (194)
+-++++++ ..+| ..+ .+.+++|+|++| .++..-+..|..+++|++|+|.+|.+.
T Consensus 14 ~Cs~~~L~~~~vP-~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 14 DCGRRGLTWASLP-TAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp ECCSSCCCTTTSC-SCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EeCCCCCccccCC-CCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 33555554 3566 222 246999999999 888665667889999999999999885
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.97 E-value=0.0037 Score=50.03 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=56.2
Q ss_pred ccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCcccc
Q 046655 98 ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTL 177 (194)
Q Consensus 98 ~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 177 (194)
.++...|.....|+.+.+..+ +...-...|.++.+|+.+.+..+.+...-...|.++.+|+.+.+..+ ++..-...|
T Consensus 253 ~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 329 (379)
T 4h09_A 253 SIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAF 329 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred EeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHh
Confidence 444455666677777777654 33233445677778888887777776333456777778888777643 442223457
Q ss_pred CCCCCCCeEeccC
Q 046655 178 GRLSKLEILNLSS 190 (194)
Q Consensus 178 ~~l~~L~~L~ls~ 190 (194)
.++++|+.+.+..
T Consensus 330 ~~C~~L~~i~ip~ 342 (379)
T 4h09_A 330 KNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCCCCCCT
T ss_pred hCCCCCCEEEECC
Confidence 7777777776654
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.96 E-value=0.0021 Score=51.97 Aligned_cols=89 Identities=16% Similarity=0.287 Sum_probs=45.2
Q ss_pred cCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccC
Q 046655 99 LGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLG 178 (194)
Q Consensus 99 lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 178 (194)
++...|..++.|+.+.+..+ ++..-...|.++.+|+.+.+..+ +...-...|.++.+|+.+.+..+ ++..-...|.
T Consensus 279 I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~ 354 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS 354 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT
T ss_pred ecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh
Confidence 33344555666666666433 33233344556666666666543 33222234556666666666433 4422233456
Q ss_pred CCCCCCeEeccCC
Q 046655 179 RLSKLEILNLSSN 191 (194)
Q Consensus 179 ~l~~L~~L~ls~N 191 (194)
++++|+.+++.+|
T Consensus 355 ~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 355 NCTALNNIEYSGS 367 (394)
T ss_dssp TCTTCCEEEESSC
T ss_pred CCCCCCEEEECCc
Confidence 6666666665544
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.80 E-value=0.0067 Score=48.95 Aligned_cols=93 Identities=23% Similarity=0.271 Sum_probs=56.3
Q ss_pred ccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCC
Q 046655 94 NITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYI 173 (194)
Q Consensus 94 ~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~ 173 (194)
.+. .++...|..+.+|+.+++..+ ++..-...|.++.+|+.+.+..+ +...-...|.++.+|+.+++.++...
T Consensus 298 ~i~-~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--- 370 (394)
T 4gt6_A 298 RIT-ELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--- 370 (394)
T ss_dssp TCC-EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---
T ss_pred ccc-ccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---
Confidence 344 566567777888888888765 44344566788888888888654 54233356888888888888877544
Q ss_pred ccccCCCCCCCeEeccCCcC
Q 046655 174 PPTLGRLSKLEILNLSSNDL 193 (194)
Q Consensus 174 p~~~~~l~~L~~L~ls~N~l 193 (194)
-..+....+|+.+.+..|.+
T Consensus 371 ~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 371 WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp HHTCBCCCCC----------
T ss_pred hhhhhccCCCCEEEeCCCCE
Confidence 13466677788887776643
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.76 E-value=0.0044 Score=50.05 Aligned_cols=88 Identities=13% Similarity=0.113 Sum_probs=62.3
Q ss_pred CccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCC
Q 046655 100 GRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGR 179 (194)
Q Consensus 100 p~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 179 (194)
+...+..+..|+.+.+..+ ++..-...|.++.+|+.+++..+ +...-...|.++.+|+.+++..| ++..-...|.+
T Consensus 289 ~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred ccccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 3345666778888888765 44334566888889999988754 55333456888999999998766 65333456888
Q ss_pred CCCCCeEeccCC
Q 046655 180 LSKLEILNLSSN 191 (194)
Q Consensus 180 l~~L~~L~ls~N 191 (194)
+++|+.+++..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 999999988654
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.61 E-value=0.0038 Score=50.40 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=66.0
Q ss_pred cccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCc
Q 046655 95 ITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIP 174 (194)
Q Consensus 95 l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p 174 (194)
+. .++...|..+.+|+.+++..+ ++..-...|.++.+|+.+.+..+ +...-...|.++.+|+.+++..+ ++ .+.
T Consensus 308 i~-~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~ 381 (394)
T 4fs7_A 308 VK-FIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYR 381 (394)
T ss_dssp CC-EECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGG
T ss_pred cc-eechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehh
Confidence 45 676677889999999999765 55444677899999999999877 65344567999999999999765 34 345
Q ss_pred cccCCCCCCCeE
Q 046655 175 PTLGRLSKLEIL 186 (194)
Q Consensus 175 ~~~~~l~~L~~L 186 (194)
..|.++++|+.+
T Consensus 382 ~~F~~c~~L~~I 393 (394)
T 4fs7_A 382 YDFEDTTKFKWI 393 (394)
T ss_dssp GGBCTTCEEEEE
T ss_pred heecCCCCCcEE
Confidence 578888888765
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.25 E-value=0.0025 Score=46.87 Aligned_cols=107 Identities=13% Similarity=0.084 Sum_probs=63.9
Q ss_pred eeeeeeccCC-cccc----ccCccccCCCCCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCccccc----Cc
Q 046655 84 GVSLLWYEND-NITG----ELGRFKFSCFPNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGI----IP 150 (194)
Q Consensus 84 ~l~~l~l~~n-~l~~----~lp~~~~~~l~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p 150 (194)
.|..+++++| +|.. .+- +.+..-+.|++|+|++| .+... +.+.+..=+.|+.|+|++|.|.+. +-
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 3444566764 5542 122 34555677889999888 65422 112222346789999999988743 22
Q ss_pred hhhccCcccceeecccCcc---CC----CCccccCCCCCCCeEeccCCc
Q 046655 151 LEMGRLRNLVHLDLSDNYL---SG----YIPPTLGRLSKLEILNLSSND 192 (194)
Q Consensus 151 ~~~~~l~~L~~L~L~~N~l---~g----~~p~~~~~l~~L~~L~ls~N~ 192 (194)
+.+..-+.|+.|+|++|.. .. .+-+.+..-+.|+.|+++.|.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2344456788888876533 31 133345556788888887764
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.84 E-value=0.04 Score=43.96 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=63.9
Q ss_pred cCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccC
Q 046655 99 LGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLG 178 (194)
Q Consensus 99 lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 178 (194)
++...+.....|+.+.+..+ ++..-...|..+.+|+.+.+..+ +...-...|.++.+|+.+.+.++.++..-...|.
T Consensus 231 i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~ 307 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFM 307 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTT
T ss_pred EccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhc
Confidence 33345666777888877665 33334556777888888888654 4423335688999999999998888844455688
Q ss_pred CCCCCCeEeccCC
Q 046655 179 RLSKLEILNLSSN 191 (194)
Q Consensus 179 ~l~~L~~L~ls~N 191 (194)
++.+|+.+++..+
T Consensus 308 ~c~~L~~i~lp~~ 320 (379)
T 4h09_A 308 DCVKLSSVTLPTA 320 (379)
T ss_dssp TCTTCCEEECCTT
T ss_pred CCCCCCEEEcCcc
Confidence 9999999998654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.28 E-value=0.0096 Score=43.73 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=62.1
Q ss_pred cCCCCCccEEEecCCCCCcc----cCCccccCCCCCCEeecCCCccccc----CchhhccCcccceeecccCccCC----
Q 046655 104 FSCFPNLKSFKIHSNYLLSG----SIPSEIAAVSMLQTLELPSSSLTGI----IPLEMGRLRNLVHLDLSDNYLSG---- 171 (194)
Q Consensus 104 ~~~l~~L~~L~l~~n~~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~g---- 171 (194)
+..-+.|++|++++|..+.. .+-+.+..-+.|+.|+|++|.+.+. +-+.+..-+.|+.|+|+.|.|..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 44567899999998513321 1223344557899999999999843 22345556899999999999983
Q ss_pred CCccccCCCCCCCeEeccCC
Q 046655 172 YIPPTLGRLSKLEILNLSSN 191 (194)
Q Consensus 172 ~~p~~~~~l~~L~~L~ls~N 191 (194)
.+-+.+..-+.|++|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 23345667788999999865
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.90 E-value=6.6 Score=24.96 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=34.9
Q ss_pred CCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCc
Q 046655 92 NDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSS 144 (194)
Q Consensus 92 ~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~ 144 (194)
|..++ .|....|..+..|+.+.+..+ ++..-...|.++.+|+.+.+....
T Consensus 5 g~~vt-~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVV-GMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCC-SSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccC-EecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCCC
Confidence 34444 566577888888888888776 443445668888888888876643
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.47 E-value=52 Score=20.62 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=34.0
Q ss_pred CCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccC
Q 046655 120 LLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167 (194)
Q Consensus 120 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 167 (194)
.++..-...|.++.+|+.+.+..+- +..-...|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 4454455678899999999987753 2133456889999999988764
Done!