BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046656
(1326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 67.0 bits (162), Expect = 6e-11, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 825 MKLKGVH------EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGG- 875
+KLK V E+ + L V+ + G ++MG SG+GK+T+++++ + T G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 876 -YISGNITISGYPKKQETFTRIS--GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSET 932
YI NI + + T R G+ Q PL+T E++ + R + E
Sbjct: 62 VYID-NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 933 RKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
R+ E +++ EL + + LS Q++R+ IA L NP II D+PT L
Sbjct: 121 RRKRALECLKMAEL----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGAL 176
Query: 993 DARAAAIVMRTVKN-TVETGRTVVCTIHQPSIDIF 1026
D++ +M+ +K E G+TVV H ++ F
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF 211
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 40/223 (17%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--SGNITISGYP--- 887
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI +G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 888 KKQETFTRISGYCEQNDI------------HSPLVTVYESLLYSAWLRLRTEVDSETRKM 935
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 936 FIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHI 344
+T+VG++ G+SGGQ++R+ +V L DE ++ LD + I+ ++ + I
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 187
Query: 345 LNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESM 391
G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 40/223 (17%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--SGNITISGYP--- 887
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI +G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 888 KKQETFTRISGYCEQNDI------------HSPLVTVYESLLYSAWLRLRTEVDSETRKM 935
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 936 FIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIH- 343
+T+VG++ G+SGGQ++R+ +V L DE ++ LD + I+ +N+H
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 184
Query: 344 ILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESM 391
I G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 185 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 40/223 (17%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--SGNITISGYP--- 887
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI +G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 888 KKQETFTRISGYCEQNDI------------HSPLVTVYESLLYSAWLRLRTEVDSETRKM 935
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 936 FIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIH- 343
+T+VG++ G+SGGQ++R+ +V L DE ++ LD + I+ +N+H
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 190
Query: 344 ILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESM 391
I G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 191 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 92/195 (47%), Gaps = 26/195 (13%)
Query: 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQ 890
K+ ++GVS + G AL+G SG GKTT + +LAG + T G I ++ ++ P K
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK- 73
Query: 891 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIE-----EIMELVE 945
R G QN P +TV+E++ + LR R E K +E I L++
Sbjct: 74 ---YREVGMVFQNYALYPHMTVFENIAFP--LRARRISKDEVEKRVVEIARKLLIDNLLD 128
Query: 946 LKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
KP + LS Q++R+ +A LV P ++ DEP S LDA I+ +K
Sbjct: 129 RKP-----------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIK 177
Query: 1006 N-TVETGRTVVCTIH 1019
+ E G T V H
Sbjct: 178 HLQQELGITSVYVTH 192
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 111/284 (39%), Gaps = 50/284 (17%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ-RTAA 201
VS +K G LLGP GKTT LL LAG + SG + ++ +N+ P+ R
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVG 78
Query: 202 YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAA 261
+ Q+ MTV E +AF R + + E+ +R E K L ID +
Sbjct: 79 MVFQNYALYPHMTVFENIAFPLRARRISK-----DEVEKRVVEIARK--LLIDNLLDRKP 131
Query: 262 TEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDE 321
T+ +SGGQ++R+ +V L DE
Sbjct: 132 TQ--------------------------------LSGGQQQRVALARALVKQPKVLLFDE 159
Query: 322 ISNGLDSSTTFHI---VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 378
+ LD++ + + L+Q + G + + E + I + + G++V
Sbjct: 160 PLSNLDANLRMIMRAEIKHLQQEL----GITSVYVTHDQAEAMTMASRIAVFNQGKLVQY 215
Query: 379 GPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHRE 422
G + V D ++M +FL++ + + +Q + R+
Sbjct: 216 GTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVENKQTILKRD 259
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 108/223 (48%), Gaps = 40/223 (17%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--SGNITISGYP--- 887
D V+L+ ++ + + G + ++G +G+GK+TL ++ YI +G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 888 KKQETFTRISGYCEQNDI------------HSPLVTVYESLLYSAWLRLRTEVDSETRKM 935
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 936 FIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHI 344
+T+VG++ G+SGGQ++R+ +V L DE ++ LD + I+ ++ + I
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 187
Query: 345 LNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESM 391
G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 108/223 (48%), Gaps = 40/223 (17%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--SGNITISGYP--- 887
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI +G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 888 KKQETFTRISGYCEQNDI------------HSPLVTVYESLLYSAWLRLRTEVDSETRKM 935
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 936 FIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
+ ++VG G +GLS QR+R+ IA LV NP I+ D+ TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIH- 343
+T+VG++ G+SGGQ++R+ +V L D+ ++ LD + I+ +N+H
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM----RNMHK 190
Query: 344 ILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESM 391
I G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 191 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 28/242 (11%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
+L F ++ +S KE+++ L G++ + G AL+G SG GK+T + ++
Sbjct: 387 NLEFKNIHFSYPSRKEVQI----------LKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 869 AGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR 925
++ + G ++I G + I G Q + T+ E++ Y R
Sbjct: 437 --QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYG-----R 488
Query: 926 TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG--LSTEQRKRLTIAVELVANPSII 983
+V + + ++E + L L GE G LS Q++R+ IA LV NP I+
Sbjct: 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL 548
Query: 984 FMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI----DIFEAFDELFLMKRGG 1039
+DE TS LD + A+V + E GRT + H+ S D+ FD ++++G
Sbjct: 549 LLDEATSALDTESEAVVQAALDKARE-GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Query: 1040 QE 1041
+
Sbjct: 608 HD 609
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
+L G+S + G AL+G SG GK+T++ +L + ++G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 897 SGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGL 956
+ E +L+ + +R + EEI+ + + Q + L
Sbjct: 1106 RAQLG--------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 957 P-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007
P G+ G LS Q++R+ IA LV P I+ +DE TS LD + +V +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA 1217
Query: 1008 VETGRTVVCTIHQPS 1022
E GRT + H+ S
Sbjct: 1218 RE-GRTCIVIAHRLS 1231
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 47/244 (19%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ--RTAAYIS 204
+K G+ L+G GK+T++ L D ++G V +G ++ + Q R I
Sbjct: 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEIKQLNVQWLRAQLGIV 1112
Query: 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEG 264
+ + + ++ E +A+ G SR E+ R KEA I FID
Sbjct: 1113 SQEPILFDCSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQ--FIDS--------- 1156
Query: 265 QEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISN 324
L D Y +T VGD+ + +SGGQK+R+ +V L +DE ++
Sbjct: 1157 -----LPDKY----------NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATS 1200
Query: 325 GLDSSTTFHIVNSL---RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPC 381
LD+ + + +L R+ + +S +Q A D I+++ +G++ G
Sbjct: 1201 ALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNA-------DLIVVIQNGKVKEHGTH 1253
Query: 382 ELVL 385
+ +L
Sbjct: 1254 QQLL 1257
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH 206
+K G+ L+G GK+T + + D + G V+ +G D+ RT
Sbjct: 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSIDGQDI------RT------- 456
Query: 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQE 266
I +RE + GV S+ +L E + D+ +D KA +E
Sbjct: 457 ---INVRYLREII-------GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAV----KE 502
Query: 267 ANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGL 326
AN D+ +K L DTLVG+ + +SGGQK+R+ +V L +DE ++ L
Sbjct: 503 ANAY-DFIMK---LPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSAL 557
Query: 327 DSST 330
D+ +
Sbjct: 558 DTES 561
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 27/248 (10%)
Query: 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGG-YISGNITISGYPKK 889
K+V L+ V+ G ++G SGAGKTT M ++AG TG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 890 QETFTRISGYCEQNDIHSPLVTVYESLLYS-AWLRLRTEVDSETRKMFIEEIMELVELKP 948
R G Q P +T +E++ + +++ E E RK +EE+ +++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKILDI-- 130
Query: 949 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVK 1005
L P E LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V+
Sbjct: 131 -HHVLNHFPRE--LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 1006 NTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGPLGSNSSDLISYL 1058
+ + G T++ H P+ DIF D + ++ +G +++Y P+ + LI +
Sbjct: 188 SRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEI 244
Query: 1059 QLMPMHVT 1066
+ VT
Sbjct: 245 NELEGKVT 252
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 28/242 (11%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
+L F ++ +S KE+++ L G++ + G AL+G SG GK+T + ++
Sbjct: 387 NLEFKNIHFSYPSRKEVQI----------LKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 869 AGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR 925
++ + G ++I G + I G Q + T+ E++ Y R
Sbjct: 437 --QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYG-----R 488
Query: 926 TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG--LSTEQRKRLTIAVELVANPSII 983
+V + + ++E + L L GE G LS Q++R+ IA LV NP I+
Sbjct: 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL 548
Query: 984 FMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI----DIFEAFDELFLMKRGG 1039
+DE TS LD + A+V + E GRT + H+ S D+ FD ++++G
Sbjct: 549 LLDEATSALDTESEAVVQAALDKARE-GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Query: 1040 QE 1041
+
Sbjct: 608 HD 609
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
+L G+S + G AL+G SG GK+T++ +L + ++G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 897 SGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGL 956
+ E +L+ + +R + EEI+ + + Q + L
Sbjct: 1106 RAQLG--------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 957 P-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007
P G+ G LS Q++R+ IA LV P I+ +DE TS LD + +V +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA 1217
Query: 1008 VETGRTVVCTIHQPS 1022
E GRT + H+ S
Sbjct: 1218 RE-GRTCIVIAHRLS 1231
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 47/244 (19%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ--RTAAYIS 204
+K G+ L+G GK+T++ L D ++G V +G ++ + Q R I
Sbjct: 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEIKQLNVQWLRAQLGIV 1112
Query: 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEG 264
+ + + ++ E +A+ G SR E+ R KEA I FID
Sbjct: 1113 SQEPILFDCSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQ--FIDS--------- 1156
Query: 265 QEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISN 324
L D Y +T VGD+ + +SGGQK+R+ +V L +DE ++
Sbjct: 1157 -----LPDKY----------NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATS 1200
Query: 325 GLDSSTTFHIVNSL---RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPC 381
LD+ + + +L R+ + +S +Q A D I+++ +G++ G
Sbjct: 1201 ALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNA-------DLIVVIQNGKVKEHGTH 1253
Query: 382 ELVL 385
+ +L
Sbjct: 1254 QQLL 1257
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH 206
+K G+ L+G GK+T + + D + G V+ +G D+ RT
Sbjct: 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSIDGQDI------RT------- 456
Query: 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQE 266
I +RE + GV S+ +L E + D+ +D KA +E
Sbjct: 457 ---INVRYLREII-------GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAV----KE 502
Query: 267 ANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGL 326
AN D+ +K L DTLVG+ + +SGGQK+R+ +V L +DE ++ L
Sbjct: 503 ANAY-DFIMK---LPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSAL 557
Query: 327 DSST 330
D+ +
Sbjct: 558 DTES 561
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 12/202 (5%)
Query: 832 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGG--YISGNITISGYP 887
E+ + L V+ + G ++MG SG+GK+T+++++ + T G YI NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID-NIKTNDLD 73
Query: 888 KKQETFTRIS--GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
+ T R G+ Q PL+T E++ + R + E R+ E +++ E
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133
Query: 946 LKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
L + + LS Q++R+ IA L NP II D+PT LD++ +M+ +K
Sbjct: 134 L----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLK 189
Query: 1006 N-TVETGRTVVCTIHQPSIDIF 1026
E G+TVV H ++ F
Sbjct: 190 KLNEEDGKTVVVVTHDINVARF 211
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 27/248 (10%)
Query: 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGG-YISGNITISGYPKK 889
K+V L+ V+ G ++G SGAGKTT M ++AG TG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 890 QETFTRISGYCEQNDIHSPLVTVYESLLYS-AWLRLRTEVDSETRKMFIEEIMELVELKP 948
R G Q P +T +E++ + +++ E E RK +EE+ +++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKILDI-- 130
Query: 949 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVK 1005
L P E LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V+
Sbjct: 131 -HHVLNHFPRE--LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 1006 NTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGPLGSNSSDLISYL 1058
+ + G T++ H P+ DIF D + ++ +G +++Y P+ + LI +
Sbjct: 188 SRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEI 244
Query: 1059 QLMPMHVT 1066
+ VT
Sbjct: 245 NELEGKVT 252
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISL 353
R +SGGQ++R+ +V L +DE + LD+ + +S R + + ++L
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDA----RMRDSARALVKEVQSRLGVTL 194
Query: 354 LQPAPETYDLF---DDIILLSDGQIVYQGPCELVLD 386
L + + D+F D + +L G++V G E + D
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 12/185 (6%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
+L V+ F G + ++G +G+GKTTL+ +LAG +G I + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGSPADPFLLRKN 82
Query: 897 SGYCEQNDIHSPL-VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVG 955
GY QN + TV E + +S L + +SE RK I++++ELV L L +
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKR-IKKVLELVGLSGLAAA--- 136
Query: 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1015
LS Q++RL IA L + + +DEP S LD + + + +++ G+ ++
Sbjct: 137 --DPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGII 194
Query: 1016 CTIHQ 1020
H+
Sbjct: 195 LVTHE 199
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 57/247 (23%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAA 201
DV+ + G++ +++G SGKTTLL LAG L +G + +G + F+ ++
Sbjct: 29 DVNAEFETGKIYVVVGKNGSGKTTLLKILAGL----LAAAGEIFLDGSPADPFLLRKNVG 84
Query: 202 YISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAA 260
Y+ Q+ I TV E +AFS G+ +E+ +R K+
Sbjct: 85 YVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----SEMRKRIKKV--------------- 124
Query: 261 ATEGQEANVLTDYYLKVLGLD--VCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALF 318
L+++GL AD L +SGGQK+RL M+ L
Sbjct: 125 --------------LELVGLSGLAAADPL-------NLSGGQKQRLAIASMLARDTRFLA 163
Query: 319 MDEISNGLDSSTT---FHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375
+DE + LD + F ++ SL+ G +I L+ E D D I+ +S+G I
Sbjct: 164 LDEPVSMLDPPSQREIFQVLESLKN-----EGKGII-LVTHELEYLDDMDFILHISNGTI 217
Query: 376 VYQGPCE 382
+ G E
Sbjct: 218 DFCGSWE 224
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 20/188 (10%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQETFT 894
LN ++ + G AL+G SG+GK+TL+ +AG + T G I ++ P K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 895 RISGYCEQNDIHSPLVTVYESLLYSAWLRL--RTEVDSETRKMFIEEIMELVELKPLRQS 952
R G QN P +TVY+++ + LR R E+D + R E+ +++ + L
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR-----EVAKMLHIDKL--- 126
Query: 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVETG 1011
L P + LS Q++R+ IA LV P ++ +DEP S LDA V +K E G
Sbjct: 127 LNRYPWQ--LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG 184
Query: 1012 RTVVCTIH 1019
T V H
Sbjct: 185 ITTVYVTH 192
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 44/234 (18%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ-RTAAYISQ 205
IK G LLGP SGK+TLL +AG + SG++ ++ D+ E P+ R + Q
Sbjct: 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQ 82
Query: 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQ 265
+ MTV + +AF + A RE+ ID ++ A
Sbjct: 83 NWALYPHMTVYKNIAFPLELRK-----------APREE---------IDKKVREVA---- 118
Query: 266 EANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNG 325
K+L +D + +SGGQ++R+ +V L +DE +
Sbjct: 119 ----------KMLHIDKLLNRYPWQ-----LSGGQQQRVAIARALVKEPEVLLLDEPLSN 163
Query: 326 LDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
LD+ + L++ L G + + E + D I ++ +G+I+ G
Sbjct: 164 LDALLRLEVRAELKRLQKEL-GITTVYVTHDQAEALAMADRIAVIREGEILQVG 216
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 26/221 (11%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQETFT 894
+N ++ + G L+G SG GKTT + ++AG T G I G+ ++ P K +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 895 RISGYCEQNDIHSPLVTVYESLLYSAWLRL--RTEVDSETRKMFIEEIMELVELKPLRQS 952
+ Q+ P +TVYE++ + ++ + E+D R + E++++ EL
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR--WAAELLQIEEL------ 134
Query: 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1012
L P + LS QR+R+ +A +V P ++ MDEP S LDA+ + +K + +
Sbjct: 135 LNRYPAQ--LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 192
Query: 1013 TVVCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGP 1046
+ ++ D + +M RG E+Y+ P
Sbjct: 193 VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 95/244 (38%), Gaps = 51/244 (20%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ-RTAAYISQ 205
IK G +LLGP GKTT L +AG + + GR+ + D+ P+ R + + Q
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQ 90
Query: 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQ 265
MTV E +AF + + P ID ++ AA Q
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKF--------------------PKDEIDKRVRWAAELLQ 130
Query: 266 EANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNG 325
+L Y + +SGGQ++R+ +V L MDE +
Sbjct: 131 IEELLNRYPAQ-------------------LSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171
Query: 326 LDSSTTFHI---VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PC 381
LD+ + + L+Q + + I + E + D I +++ GQ++ G P
Sbjct: 172 LDAKLRVAMRAEIKKLQQKLKV----TTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPT 227
Query: 382 ELVL 385
E+ L
Sbjct: 228 EVYL 231
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 26/221 (11%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQETFT 894
+N ++ + G L+G SG GKTT + ++AG T G I G+ ++ P K +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 895 RISGYCEQNDIHSPLVTVYESLLYSAWLRL--RTEVDSETRKMFIEEIMELVELKPLRQS 952
+ Q+ P +TVYE++ + ++ + E+D R + E++++ EL
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR--WAAELLQIEEL------ 135
Query: 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1012
L P + LS QR+R+ +A +V P ++ MDEP S LDA+ + +K + +
Sbjct: 136 LNRYPAQ--LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 193
Query: 1013 TVVCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGP 1046
+ ++ D + +M RG E+Y+ P
Sbjct: 194 VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 234
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 95/244 (38%), Gaps = 51/244 (20%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ-RTAAYISQ 205
IK G +LLGP GKTT L +AG + + GR+ + D+ P+ R + + Q
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQ 91
Query: 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQ 265
MTV E +AF + + P ID ++ AA Q
Sbjct: 92 SYAVWPHMTVYENIAFPLKIKKF--------------------PKDEIDKRVRWAAELLQ 131
Query: 266 EANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNG 325
+L Y + +SGGQ++R+ +V L MDE +
Sbjct: 132 IEELLNRYPAQ-------------------LSGGQRQRVAVARAIVVEPDVLLMDEPLSN 172
Query: 326 LDSSTTFHI---VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PC 381
LD+ + + L+Q + + I + E + D I +++ GQ++ G P
Sbjct: 173 LDAKLRVAMRAEIKKLQQKLKV----TTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPT 228
Query: 382 ELVL 385
E+ L
Sbjct: 229 EVYL 232
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 40/248 (16%)
Query: 803 LPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 862
+ E Y L +++ Y+ + D L G++ + G +TA++G +G GK+
Sbjct: 1 MSLEDYILKVEELNYN------------YSDGTHALKGINMNIKRGEVTAILGGNGVGKS 48
Query: 863 TLMDVLAG--RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPL--VTVYESLLY 918
TL G + + G I + Y +K R S D + L +VY+ + +
Sbjct: 49 TLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF 108
Query: 919 SA------WLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTI 972
A +R VD+ ++ IE + + KP LS Q+KR+ I
Sbjct: 109 GAVNMKLPEDEIRKRVDNALKRTGIEHLKD----KPTH----------CLSFGQKKRVAI 154
Query: 973 AVELVANPSIIFMDEPTSGLDARAAAIVMR-TVKNTVETGRTVVCTIHQPSIDIFEAF-D 1030
A LV P ++ +DEPT+GLD + +M+ V+ E G T++ H IDI + D
Sbjct: 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH--DIDIVPLYCD 212
Query: 1031 ELFLMKRG 1038
+F+MK G
Sbjct: 213 NVFVMKEG 220
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 111/271 (40%), Gaps = 54/271 (19%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH 206
IK G +T +LG GK+TL G L S SGR+ ++ ++ Y +
Sbjct: 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPID---------YSRK- 77
Query: 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL-FIDVFMKAAATEGQ 265
G M +RE++ + + + A + D+ F V MK E +
Sbjct: 78 ----GIMKLRESIGI------------VFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR 121
Query: 266 EANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNG 325
+ D LK G++ + D+ +S GQKKR+ ++V L +DE + G
Sbjct: 122 KR---VDNALKRTGIE-----HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAG 173
Query: 326 LDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQG 379
LD I+ L + L T +I+ T+D+ D++ ++ +G+++ QG
Sbjct: 174 LDPMGVSEIMKLLVEMQKELGITIIIA-------THDIDIVPLYCDNVFVMKEGRVILQG 226
Query: 380 PCELVL---DFFESMGFKCPERKSVADFLQE 407
+ V + + + P + + L+E
Sbjct: 227 NPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 40/245 (16%)
Query: 823 KEMKLKG------VH-----EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 871
K+MK+KG VH + +L G++ G AL+G SG GK+T++ +L
Sbjct: 408 KDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL-- 465
Query: 872 KTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSE 931
+ + G ITI G + + +N V E L++ + + E
Sbjct: 466 RYYDVLKGKITIDGVDVRDINLE----FLRKN----VAVVSQEPALFNCTIEENISLGKE 517
Query: 932 --TRKMFIEEIMELVELKPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANP 980
TR EE++ ++ + + LP G+ G LS Q++R+ IA LV NP
Sbjct: 518 GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP 573
Query: 981 SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040
I+ +DE TS LDA + IV + + + GRT + H+ S I A +L + + GQ
Sbjct: 574 KILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST-IRNA--DLIISCKNGQ 629
Query: 1041 EIYVG 1045
+ VG
Sbjct: 630 VVEVG 634
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 28/197 (14%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK----QET 892
+L G+S + PG AL+G SG GK+T++ +L + + G I I G K + T
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEHT 1151
Query: 893 FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS 952
++I+ ++ + ++ E+++Y +D + M ++ E L +
Sbjct: 1152 RSQIAIVSQEPTLFD--CSIAENIIYG--------LDPSSVTM--AQVEEAARLANIHNF 1199
Query: 953 LVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1003
+ LP G+ G LS Q++R+ IA LV NP I+ +DE TS LD + +V
Sbjct: 1200 IAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEA 1259
Query: 1004 VKNTVETGRTVVCTIHQ 1020
+ E GRT + H+
Sbjct: 1260 LDRARE-GRTCIVIAHR 1275
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 97/235 (41%), Gaps = 41/235 (17%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYIS-- 204
++PG+ L+GP GK+T++ L D+ + G + +G ++ P+ T + I+
Sbjct: 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDT---LGGEIFIDGSEIKTLNPEHTRSQIAIV 1158
Query: 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEG 264
+ + + ++ E + + G+ P +
Sbjct: 1159 SQEPTLFDCSIAENIIY------------------------GLDPS-------SVTMAQV 1187
Query: 265 QEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISN 324
+EA L + + + L +T VGD + +SGGQK+R+ +V L +DE ++
Sbjct: 1188 EEAARLANIHNFIAELPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATS 1246
Query: 325 GLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
LD+ + + +L + G I + + D I ++S+G I+ +G
Sbjct: 1247 ALDTESEKVVQEALDR---AREGRTCIVIAHRLNTVMNA-DCIAVVSNGTIIEKG 1297
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 111/301 (36%), Gaps = 78/301 (25%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNG---HDMNEFVPQRTAAYI 203
+ G+ L+G GK+T++ L D + G++T +G D+N ++ A +
Sbjct: 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINLEFLRKNVAVV 497
Query: 204 SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATE 263
SQ + T+ E ++ +G+ +R +M+ E IK
Sbjct: 498 SQEPA-LFNCTIEENISLGK--EGI-TREEMVAACKMANAEKFIK--------------- 538
Query: 264 GQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEIS 323
L + Y +TLVGD + +SGGQK+R+ +V L +DE +
Sbjct: 539 -----TLPNGY----------NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEAT 582
Query: 324 NGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCEL 383
+ LD+ + + +L + G I ++ T D II +GQ+V G
Sbjct: 583 SALDAESEGIVQQALDK---AAKGRTTI-IIAHRLSTIRNADLIISCKNGQVVEVG---- 634
Query: 384 VLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVG 443
D R + + Y +T Q F++A S G
Sbjct: 635 -----------------------------DHRALMAQQGLYYDLVTAQTFTDAVDSAAEG 665
Query: 444 Q 444
+
Sbjct: 666 K 666
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 40/223 (17%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--SGNITISGYP--- 887
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI +G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 888 KKQETFTRISGYCEQNDI------------HSPLVTVYESLLYSAWLRLRTEVDSETRKM 935
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 936 FIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ ++MR + + + GRTV+ I + + D + +M++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIH- 343
+T+VG++ G+SGGQ++R+ +V L DE ++ LD + I+ +N+H
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 184
Query: 344 ILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESM 391
I G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 185 ICKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 40/223 (17%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--SGNITISGYP--- 887
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI +G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 888 KKQETFTRISGYCEQNDI------------HSPLVTVYESLLYSAWLRLRTEVDSETRKM 935
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 936 FIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ ++MR + + + GRTV+ I + + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIH- 343
+T+VG++ G+SGGQ++R+ +V L DE ++ LD + I+ +N+H
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 190
Query: 344 ILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESM 391
I G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 191 ICKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 110/223 (49%), Gaps = 33/223 (14%)
Query: 830 VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889
++D +L +S +P + A G SG GK+T+ +L + +G ITI G P
Sbjct: 10 AYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPID 67
Query: 890 Q---ETFTRISGYCEQNDIHSPLV--TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV 944
E + G+ Q+ S ++ T+ E+L Y E D E++ +++
Sbjct: 68 NISLENWRSQIGFVSQD---SAIMAGTIRENLTYG------LEGDYTD-----EDLWQVL 113
Query: 945 ELKPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
+L R + +P GE G +S QR+RL IA + NP I+ +DE T+ LD+
Sbjct: 114 DLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ ++V + + +++ GRT + H+ S I +A D+++ +++G
Sbjct: 174 SESMVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHI 344
+T VG+ V+ ISGGQ++RL + L +DE + LDS + + +L +
Sbjct: 130 NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS---L 185
Query: 345 LNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP-CELV 384
+ G + + D D I + GQI G ELV
Sbjct: 186 MKGRTTLVIAHRLSTIVDA-DKIYFIEKGQITGSGKHNELV 225
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 18/215 (8%)
Query: 825 MKLKGVH------EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGG- 875
+KLK V E+ + L V+ + G ++ G SG+GK+T ++++ + T G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 876 -YISGNITISGYPKKQETFTRIS--GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSET 932
YI NI + + T R G+ Q PL+T E++ + R E
Sbjct: 62 VYID-NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEE 120
Query: 933 RKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
R+ E ++ EL + + LS Q++R+ IA L NP II DEPT L
Sbjct: 121 RRKRALECLKXAEL----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGAL 176
Query: 993 DARAAAIVMRTVKN-TVETGRTVVCTIHQPSIDIF 1026
D++ + + +K E G+TVV H ++ F
Sbjct: 177 DSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARF 211
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 27/188 (14%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET----FTRISGYCEQN 903
G +TAL+G SG+GK+T++ +L + SG I++ G+ +Q ++I ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 904 DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE-------LKPLRQSLVGL 956
+ S ++ E++ Y A + + EEI + E ++ Q +
Sbjct: 428 ILFS--CSIAENIAYGA---------DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV 476
Query: 957 PGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV 1014
GE G LS Q++R+ IA L+ NP I+ +DE TS LDA +V + ++ GRTV
Sbjct: 477 VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTV 535
Query: 1015 VCTIHQPS 1022
+ H+ S
Sbjct: 536 LVIAHRLS 543
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 42/248 (16%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QR 198
D S I G +T L+GP SGK+T+L L D + SG ++ +GHD+ + P +
Sbjct: 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRS 418
Query: 199 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
+SQ + + ++ E +A+ A D
Sbjct: 419 KIGTVSQEPI-LFSCSIAENIAYGA------------------------------DDPSS 447
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALF 318
A E Q + + + +T+VG++ V +SGGQK+R+ ++ L
Sbjct: 448 VTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILL 506
Query: 319 MDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 378
+DE ++ LD+ + + +L + +++G V+ ++ T + + +L G+I
Sbjct: 507 LDEATSALDAENEYLVQEALDR---LMDGRTVL-VIAHRLSTIKNANMVAVLDQGKITEY 562
Query: 379 GPCELVLD 386
G E +L
Sbjct: 563 GKHEELLS 570
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 17/207 (8%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L+ VS + G AL+G SG+GK+T+ ++ + SG+I + G+ + T +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 898 GY---CEQNDIHSPLVTVYESLLYSAWLR-LRTEVDSETRKMFIEEIMELVELKPLRQSL 953
+ QN +H T+ ++ Y+A R +++ R+ ME +E P Q L
Sbjct: 417 RHFALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQ---AHAMEFIENMP--QGL 470
Query: 954 VGLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1011
+ GE+G LS QR+R+ IA L+ + ++ +DE TS LD + + + + ++
Sbjct: 471 DTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKN 529
Query: 1012 RTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+TV+ H+ S E DE+ ++ G
Sbjct: 530 KTVLVIAHRLS--TIEQADEILVVDEG 554
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 50/243 (20%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRT 199
VS I G+ L+G SGK+T+ D SG + +GHD+ ++ +R
Sbjct: 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRH 418
Query: 200 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKA 259
A +SQ +VH+ T+ +A++A E R + E + +A
Sbjct: 419 FALVSQ-NVHLFNDTIANNIAYAAEG-----------EYTREQIEQAAR---------QA 457
Query: 260 AATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFM 319
A E E + DT++G+ +SGGQ++R+ ++ A L +
Sbjct: 458 HAMEFIE------------NMPQGLDTVIGENGT-SLSGGQRQRVAIARALLRDAPVLIL 504
Query: 320 DEISNGLDSSTTFHI---VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIV 376
DE ++ LD+ + I ++ L++N +L +S ++ A D+I+++ +G+I+
Sbjct: 505 DEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQA-------DEILVVDEGEII 557
Query: 377 YQG 379
+G
Sbjct: 558 ERG 560
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 27/188 (14%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET----FTRISGYCEQN 903
G +TAL+G SG+GK+T++ +L + SG I++ G+ +Q ++I ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 904 DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE-------LKPLRQSLVGL 956
+ S ++ E++ Y A + + EEI + E ++ Q +
Sbjct: 459 ILFS--CSIAENIAYGA---------DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV 507
Query: 957 PGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV 1014
GE G LS Q++R+ IA L+ NP I+ +DE TS LDA +V + ++ GRTV
Sbjct: 508 VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTV 566
Query: 1015 VCTIHQPS 1022
+ H S
Sbjct: 567 LVIAHHLS 574
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 103/248 (41%), Gaps = 42/248 (16%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QR 198
D S I G +T L+GP SGK+T+L L D + SG ++ +GHD+ + P +
Sbjct: 393 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRS 449
Query: 199 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
+SQ + + ++ E +A+ A D
Sbjct: 450 KIGTVSQEPI-LFSCSIAENIAYGA------------------------------DDPSS 478
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALF 318
A E Q + + + +T+VG++ V +SGGQK+R+ ++ L
Sbjct: 479 VTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILL 537
Query: 319 MDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 378
+DE ++ LD+ + + +L + +++G V+ + T + + +L G+I
Sbjct: 538 LDEATSALDAENEYLVQEALDR---LMDGRTVLVIAHHL-STIKNANMVAVLDQGKITEY 593
Query: 379 GPCELVLD 386
G E +L
Sbjct: 594 GKHEELLS 601
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 101/229 (44%), Gaps = 40/229 (17%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFT 894
+L G++ PG +TAL+G +G+GK+T+ +L + TGG + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEPLVQ---- 85
Query: 895 RISGYCEQNDIHSPLVTV-YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
+ + +H+ + V E LL+ R TR +EEI + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFI 139
Query: 954 VGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
G P GE+G LS QR+ + +A L+ P ++ +D+ TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLL 199
Query: 1005 KNTVE-TGRTVVCTIHQPSI-------------DIFEAFDELFLMKRGG 1039
+ E RTV+ HQ S+ + E L LM+RGG
Sbjct: 200 YESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 56/241 (23%)
Query: 149 PGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM----NEFVPQRTAAYIS 204
PG++T L+GP SGK+T+ L + G+V +G + + ++ + AA +
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAA-VG 99
Query: 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATE- 263
Q + G + RE +A+ +R + E+ E+G FI F + TE
Sbjct: 100 QEPLLFGR-SFRENIAYGL------TRTPTMEEITAVAMESGAHD--FISGFPQGYDTEV 150
Query: 264 GQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEIS 323
G+ N L SGGQ++ + ++ L +D+ +
Sbjct: 151 GETGNQL--------------------------SGGQRQAVALARALIRKPRLLILDQAT 184
Query: 324 NGLDSSTTFHIVNSLRQNIH-----ILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 378
+ LD+ + L ++ +L T +SL + A I+ L +G + Q
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERA-------HHILFLKEGSVCEQ 237
Query: 379 G 379
G
Sbjct: 238 G 238
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 96/218 (44%), Gaps = 27/218 (12%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGNITISGYPKKQETF 893
+ GVS R G + L+G SG+GKTT++ ++AG R T G +I G P+K
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 894 TRISGYCEQNDIHSPLVTVYESLLYSAWLRL--RTEVDSETRKMFIEEIMELVELKPLRQ 951
R G QN +TVY+++ + + + E+D+ R EL+ L
Sbjct: 87 -RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVR--------ELLRFMRLES 137
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVKNTV 1008
P E LS Q++R+ +A L P ++ DEP + +D R +R V +
Sbjct: 138 YANRFPHE--LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD-- 193
Query: 1009 ETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046
E G T V H + E D + ++ G E + P
Sbjct: 194 EMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 100/255 (39%), Gaps = 52/255 (20%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ-RTAA 201
VS I+ G M LLGP SGKTT+L +AG L+ K G V G + + PQ R
Sbjct: 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAG-LERPTK--GDVWIGGKRVTDLPPQKRNVG 90
Query: 202 YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAA 261
+ Q+ MTV + ++F R + V E+ R +E
Sbjct: 91 LVFQNYALFQHMTVYDNVSFGLREKRVPK-----DEMDARVRE----------------- 128
Query: 262 TEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDE 321
L+ + L+ A+ + +SGGQ++R+ + L DE
Sbjct: 129 ------------LLRFMRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDE 171
Query: 322 ISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI------ 375
+D+ + +RQ +H G + + E ++ D +++L +G +
Sbjct: 172 PFAAIDTQIRRELRTFVRQ-VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTP 230
Query: 376 --VYQGPCELVLDFF 388
VY+ P L + F
Sbjct: 231 EEVYEKPGTLFVASF 245
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 28/198 (14%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETF 893
+L ++ + G A +G+SG GK+TL++++ + SG I I G+ K +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFLTGSL 413
Query: 894 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
G +Q++I TV E++L L T D EE++E ++ +
Sbjct: 414 RNQIGLVQQDNILFS-DTVKENIL----LGRPTATD--------EEVVEAAKMANAHDFI 460
Query: 954 VGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
+ LP GE G LS Q++RL+IA + NP I+ +DE TS LD + +I+ +
Sbjct: 461 MNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL 520
Query: 1005 KNTVETGRTVVCTIHQPS 1022
+ + RT + H+ S
Sbjct: 521 -DVLSKDRTTLIVAHRLS 537
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 43/240 (17%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRT 199
D++ I+ G +G GK+TL+ + D + SG++ +GH++ +F+ R
Sbjct: 359 DINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRN 415
Query: 200 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKA 259
+ Q D + TV+E + +P A
Sbjct: 416 QIGLVQQDNILFSDTVKENILLG-------------------------RP--------TA 442
Query: 260 AATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFM 319
E EA + + + ++ L DT VG+ V+ +SGGQK+RL+ + + L +
Sbjct: 443 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILIL 501
Query: 320 DEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
DE ++ LD + + +++ + +L+ ++ T D I+++ +G IV G
Sbjct: 502 DEATSALDLESE----SIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 15/210 (7%)
Query: 825 MKLKGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYI 877
+ +K +H EDK +L G+S PG + A+MG +G+GK+TL LAGR+ TGG +
Sbjct: 2 LSIKDLHVSVEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 878 S--GNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKM 935
G ++ P+ + + Q + P V+ + L +A +R+ ET
Sbjct: 61 EFKGKDLLALSPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDR 117
Query: 936 F-IEEIM-ELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
F +++M E + L + + L+ G S ++KR I V P + +DE SGLD
Sbjct: 118 FDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 177
Query: 994 ARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1023
A +V V + + R+ + H I
Sbjct: 178 IDALKVVADGVNSLRDGKRSFIIVTHYQRI 207
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 97/250 (38%), Gaps = 52/250 (20%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH 206
+ PG + ++GP SGK+TL LAG+ D + G V + G D+ P+ A
Sbjct: 24 VHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPEDRAG----- 77
Query: 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAAT-EGQ 265
+G+ + E+ G+ F+ + A + GQ
Sbjct: 78 -------------------EGIFMAFQYPVEI------PGVSNQFFLQTALNAVRSYRGQ 112
Query: 266 EANVLTDYY----LKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDE 321
E D+ K+ L + D L V G SGG+KKR +M V +DE
Sbjct: 113 ETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPELCILDE 171
Query: 322 ISNGLDSSTTFHI---VNSLRQN----IHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374
+GLD + VNSLR I + + ++ ++P D + +L G+
Sbjct: 172 SDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKP--------DYVHVLYQGR 223
Query: 375 IVYQGPCELV 384
IV G LV
Sbjct: 224 IVKSGDFTLV 233
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 15/210 (7%)
Query: 825 MKLKGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYI 877
+ +K +H EDK +L G+S PG + A+MG +G+GK+TL LAGR+ TGG +
Sbjct: 21 LSIKDLHVSVEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 79
Query: 878 S--GNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKM 935
G ++ P+ + + Q + P V+ + L +A +R+ ET
Sbjct: 80 EFKGKDLLALSPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDR 136
Query: 936 F-IEEIM-ELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
F +++M E + L + + L+ G S ++KR I V P + +DE SGLD
Sbjct: 137 FDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 196
Query: 994 ARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1023
A +V V + + R+ + H I
Sbjct: 197 IDALKVVADGVNSLRDGKRSFIIVTHYQRI 226
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 97/250 (38%), Gaps = 52/250 (20%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH 206
+ PG + ++GP SGK+TL LAG+ D + G V + G D+ P+ A
Sbjct: 43 VHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPEDRAG----- 96
Query: 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAAT-EGQ 265
+G+ + E+ G+ F+ + A + GQ
Sbjct: 97 -------------------EGIFMAFQYPVEI------PGVSNQFFLQTALNAVRSYRGQ 131
Query: 266 EANVLTDYY----LKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDE 321
E D+ K+ L + D L V G SGG+KKR +M V +DE
Sbjct: 132 ETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPELCILDE 190
Query: 322 ISNGLDSSTTFHI---VNSLRQN----IHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374
+GLD + VNSLR I + + ++ ++P D + +L G+
Sbjct: 191 SDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKP--------DYVHVLYQGR 242
Query: 375 IVYQGPCELV 384
IV G LV
Sbjct: 243 IVKSGDFTLV 252
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 24/196 (12%)
Query: 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG--YPKKQET 892
L +L G++ R G + ++G SG+GK+T + L + + G I I G K
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTN 73
Query: 893 FTRIS---GYCEQNDIHSPLVTVYESLLYS-----AWLRLRTEVDSETRKMFIEEIMELV 944
++ G Q P +TV ++ + W R + E + MEL+
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA----------MELL 123
Query: 945 ELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
+ L+ P LS Q +R+ IA L P I+ DEPTS LD V+ +
Sbjct: 124 DKVGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 181
Query: 1005 KNTVETGRTVVCTIHQ 1020
K G T+V H+
Sbjct: 182 KQLANEGMTMVVVTHE 197
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 19/201 (9%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQ---ETFTRISGYC 900
+ G L+G SG GKTT + ++AG + G I + P+K R
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 901 EQNDIHSPLVTVYESLLYSAWLRL--RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPG 958
Q+ P +TVY+++ + LR R E+D R E+ EL L + L P
Sbjct: 87 FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR--------EVAELLGLTELLNRKPR 138
Query: 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVETGRTVVCT 1017
E LS QR+R+ + +V P + MDEP S LDA+ + +K + G T +
Sbjct: 139 E--LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYV 196
Query: 1018 IHQPSIDIFEAFDELFLMKRG 1038
H ++ D + +M RG
Sbjct: 197 THD-QVEAMTMGDRIAVMNRG 216
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 97/248 (39%), Gaps = 52/248 (20%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM------NEFVP--QR 198
+K G +LLGP GKTT L +AG + S G++ Y G + FVP R
Sbjct: 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQI-YIGDKLVADPEKGIFVPPKDR 81
Query: 199 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
A + Q MTV + +AF + + V + E+ +R +E
Sbjct: 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQ-----EIDQRVREVA------------ 124
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALF 318
++LGL T + + R +SGGQ++R+ G +V
Sbjct: 125 -----------------ELLGL-----TELLNRKPRELSGGQRQRVALGRAIVRKPQVFL 162
Query: 319 MDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 378
MDE + LD+ + L++ L G I + E + D I +++ G +
Sbjct: 163 MDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221
Query: 379 GPCELVLD 386
G + V D
Sbjct: 222 GSPDEVYD 229
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 24/196 (12%)
Query: 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG--YPKKQET 892
L +L G++ R G + ++G SG+GK+T + L + + G I I G K
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTN 94
Query: 893 FTRIS---GYCEQNDIHSPLVTVYESLLYS-----AWLRLRTEVDSETRKMFIEEIMELV 944
++ G Q P +TV ++ + W R + E + MEL+
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA----------MELL 144
Query: 945 ELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
+ L+ P LS Q +R+ IA L P I+ DEPTS LD V+ +
Sbjct: 145 DKVGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 202
Query: 1005 KNTVETGRTVVCTIHQ 1020
K G T+V H+
Sbjct: 203 KQLANEGMTMVVVTHE 218
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 40/229 (17%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFT 894
+L G++ PG +TAL+G +G+GK+T+ +L + TGG + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEPLVQ---- 85
Query: 895 RISGYCEQNDIHSPLVTV-YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
+ + +H+ + V E LL+ R TR +EEI + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTMEEITAVAMESGAHDFI 139
Query: 954 VGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
G P GE+G LS QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
Query: 1005 KNTVE-TGRTVVCTIHQPSI-------------DIFEAFDELFLMKRGG 1039
+ E RTV+ Q S+ + E L LM+RGG
Sbjct: 200 YESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 56/241 (23%)
Query: 149 PGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM----NEFVPQRTAAYIS 204
PG++T L+GP SGK+T+ L + G+V +G + + ++ + AA +
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAA-VG 99
Query: 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATE- 263
Q + G + RE +A+ +R + E+ E+G FI F + TE
Sbjct: 100 QEPLLFGR-SFRENIAYGL------TRTPTMEEITAVAMESGAHD--FISGFPQGYDTEV 150
Query: 264 GQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEIS 323
G+ N L SGGQ++ + ++ L +D +
Sbjct: 151 GETGNQL--------------------------SGGQRQAVALARALIRKPRLLILDNAT 184
Query: 324 NGLDSSTTFHIVNSLRQNIH-----ILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 378
+ LD+ + L ++ +L T +SL + A I+ L +G + Q
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA-------HHILFLKEGSVCEQ 237
Query: 379 G 379
G
Sbjct: 238 G 238
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 40/229 (17%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFT 894
+L G++ PG +TAL+G +G+GK+T+ +L + TGG + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEPLVQ---- 85
Query: 895 RISGYCEQNDIHSPLVTV-YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
+ + +H+ + V E LL+ R TR +EEI + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFI 139
Query: 954 VGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
G P GE+G L+ QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
Query: 1005 KNTVE-TGRTVVCTIHQPSI-------------DIFEAFDELFLMKRGG 1039
+ E RTV+ Q S+ + E L LM+RGG
Sbjct: 200 YESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 23/198 (11%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET--FTRISGYCEQNDI 905
G +G SG GK+TL+ ++AG +T SG++ I G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI-GEKRMNDTPPAERGVGMVFQSYA 85
Query: 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL---KPLRQSLVGLPGESGL 962
P ++V E++ + L + R + E+++L L KP L
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KAL 134
Query: 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET--GRTVVCTIHQ 1020
S QR+R+ I LVA PS+ +DEP S LDA A + MR + + GRT++ H
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 1021 PSIDIFEAFDELFLMKRG 1038
++ D++ ++ G
Sbjct: 194 -QVEAMTLADKIVVLDAG 210
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 45/244 (18%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTA 200
D++ I G + +GP GK+TLL +AG L++ SG + MN+ P +R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LETI--TSGDLFIGEKRMNDTPPAERGV 77
Query: 201 AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAA 260
+ Q ++V E ++F + G A++E I+ +
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAG-----------AKKE---------VINQRVNQV 117
Query: 261 ATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMD 320
A Q A++L D + +SGGQ++R+ G +V +D
Sbjct: 118 AEVLQLAHLL-------------------DRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158
Query: 321 EISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG- 379
E + LD++ + + + +H G +I + E L D I++L G++ G
Sbjct: 159 EPLSNLDAALRVQMRIEISR-LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
Query: 380 PCEL 383
P EL
Sbjct: 218 PLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 23/198 (11%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET--FTRISGYCEQNDI 905
G +G SG GK+TL+ ++AG +T SG++ I G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI-GEKRMNDTPPAERGVGMVFQSYA 85
Query: 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL---KPLRQSLVGLPGESGL 962
P ++V E++ + L + R + E+++L L KP L
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KAL 134
Query: 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET--GRTVVCTIHQ 1020
S QR+R+ I LVA PS+ +DEP S LDA A + MR + + GRT++ H
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 1021 PSIDIFEAFDELFLMKRG 1038
++ D++ ++ G
Sbjct: 194 -QVEAMTLADKIVVLDAG 210
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 45/244 (18%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTA 200
D++ I G + +GP GK+TLL +AG L++ SG + MN+ P +R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LETI--TSGDLFIGEKRMNDTPPAERGV 77
Query: 201 AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAA 260
+ Q ++V E ++F + G A++E I+ +
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAG-----------AKKE---------VINQRVNQV 117
Query: 261 ATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMD 320
A Q A++L D + +SGGQ++R+ G +V +D
Sbjct: 118 AEVLQLAHLL-------------------DRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158
Query: 321 EISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG- 379
E + LD++ + + + +H G +I + E L D I++L G++ G
Sbjct: 159 EPLSNLDAALRVQMRIEISR-LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
Query: 380 PCEL 383
P EL
Sbjct: 218 PLEL 221
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 110/247 (44%), Gaps = 26/247 (10%)
Query: 790 VVRATQPKKRGM-VLPFEPYSLTFDDVTYSADMPKEMKLKGVH----EDKLVLLNGVSGA 844
+VRA+ KR + VL +P D+ ++ + + V E+ +L+GV+ +
Sbjct: 306 IVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFS 365
Query: 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQND 904
+PG L A++G +G+GK+TLM+++ + G + + + + G+
Sbjct: 366 VKPGSLVAVLGETGSGKSTLMNLIP--RLIDPERGRVEVDELDVRTVKLKDLRGHIS--- 420
Query: 905 IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP------- 957
E++L+S ++ + E +EI+E ++ + ++ LP
Sbjct: 421 -----AVPQETVLFSGTIKENLKWGREDATD--DEIVEAAKIAQIHDFIISLPEGYDSRV 473
Query: 958 --GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1015
G S Q++RL+IA LV P ++ +D+ TS +D ++ +K + T +
Sbjct: 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFI 533
Query: 1016 CTIHQPS 1022
T P+
Sbjct: 534 ITQKIPT 540
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 39/229 (17%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH 206
+KPG + +LG SGK+TL+ + +D GRV + D+ + +IS
Sbjct: 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISA- 421
Query: 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQE 266
+ET+ FS + E + +E A E E
Sbjct: 422 -------VPQETVLFSG----------TIKENLKWGRE-------------DATDDEIVE 451
Query: 267 ANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGL 326
A + + ++ L D+ V + R SGGQK+RL+ +V L +D+ ++ +
Sbjct: 452 AAKIAQIHDFIISLPEGYDSRV-ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSV 510
Query: 327 DSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375
D T I++ L++ G + Q P T L D I++L +G++
Sbjct: 511 DPITEKRILDGLKRYTK---GCTTFIITQKIP-TALLADKILVLHEGKV 555
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 26/192 (13%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG---YPKKQETF 893
+L G+S G + L+G +GAGKTT + +++ SG +T+ G + E
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGIVTVFGKNVVEEPHEVR 87
Query: 894 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
IS E+ Y ++ +LR + + EI E+VE R +
Sbjct: 88 KLISYLPEE-------AGAYRNMQGIEYLRFVAGFYASSS----SEIEEMVE----RATE 132
Query: 954 VGLPGE------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007
+ GE S S ++L IA L+ NP + +DEPTSGLD A V + +K
Sbjct: 133 IAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192
Query: 1008 VETGRTVVCTIH 1019
+ G T++ + H
Sbjct: 193 SQEGLTILVSSH 204
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG------Y 886
D +L GV+ G + ALMG +GAGK+TL +LAG G I + G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 887 PKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL 946
P ++ + Q + P VT+ L + +L EV F ++ + +EL
Sbjct: 74 PDERARKGLFLAF--QYPVEVPGVTIANFLRLALQAKLGREVGVAE---FWTKVKKALEL 128
Query: 947 KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
+S + G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 129 LDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV 186
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 59/263 (22%), Positives = 116/263 (44%), Gaps = 55/263 (20%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ---RT 199
V+ ++ G + L+GP +GK+TL LAG + +++ G + +G ++ E P R
Sbjct: 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE-RGEILLDGENILELSPDERARK 80
Query: 200 AAYIS-QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
+++ Q+ V + +T+ L + + A+ +E G+ F K
Sbjct: 81 GLFLAFQYPVEVPGVTIANFLRLALQ--------------AKLGREVGVAE--FWTKVKK 124
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALF 318
A L++L D ++ + + G SGG+KKR +++V
Sbjct: 125 A---------------LELLDWD---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV 166
Query: 319 MDEISNGLDSSTTFHI---VNSLR----QNIHILNGTAVISLLQPAPETYDLFDDIILLS 371
+DE +GLD + VN++R + I + +++ +QP D + ++
Sbjct: 167 LDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQP--------DKVHVMM 218
Query: 372 DGQIVYQGPCELVLDFFESMGFK 394
DG++V G EL L+ E+ G++
Sbjct: 219 DGRVVATGGPELALE-LEAKGYE 240
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 27/217 (12%)
Query: 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQET 892
+++L G++ RPG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG----GQLLLDGKPLPQY- 84
Query: 893 FTRISGYCEQNDIHSPLVTV-YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
E +H + V E ++ L+ T+K +EEI
Sbjct: 85 --------EHRYLHRQVAAVGQEPQVFGRSLQENIAY-GLTQKPTMEEITAAAVKSGAHS 135
Query: 952 SLVGLP---------GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1002
+ GLP S LS QR+ + +A L+ P ++ +D+ TS LDA + V +
Sbjct: 136 FISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 1003 TVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039
+ + E V I Q + + E D + ++ G
Sbjct: 196 LLYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
Score = 37.0 bits (84), Expect = 0.067, Method: Composition-based stats.
Identities = 52/240 (21%), Positives = 99/240 (41%), Gaps = 58/240 (24%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH 206
++PG +T L+GP SGK+T+ L + G++ +G + PQ Y+ +
Sbjct: 40 LRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPL----PQYEHRYLHRQ 92
Query: 207 DVHIGE------MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAA 260
+G+ +++E +A+ LT+ E+ + AA
Sbjct: 93 VAAVGQEPQVFGRSLQENIAYG------------LTQKPTMEE-------------ITAA 127
Query: 261 ATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMD 320
A + + ++ GL DT V DE +SGGQ++ + ++ L +D
Sbjct: 128 AVKSGAHSFIS-------GLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLILD 179
Query: 321 EISNGLDSSTTFHIVNSL-----RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375
+ ++ LD+++ + L R + +L T +SL++ A D I+ L G I
Sbjct: 180 DATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA-------DHILFLEGGAI 232
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 17/208 (8%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG---YPKKQETF 893
+LN +S + PG + ++G SG GKTTL+ LAG + SG I++SG + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 894 TRIS--GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
R GY Q + P +TVY ++ Y + + + IE ++EL + L
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLG---NGKGRTAQERQRIEAMLELTGISELAG 133
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-T 1010
P E LS Q++R +A L +P +I +DEP S LD + + + +
Sbjct: 134 R---YPHE--LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188
Query: 1011 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
G++ V H + + D + +MK+G
Sbjct: 189 GKSAVFVSHDRE-EALQYADRIAVMKQG 215
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAG--QLDS-SLKVSGRVTYNGHDMNEFVPQR 198
D+S + PG + ++G GKTTLL LAG Q DS + +SG+ ++ + N V +R
Sbjct: 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFS-KNTNLPVRER 80
Query: 199 TAAYISQHDVHIGEMTVRETLAF-----SARCQGVGSRYDMLTELARREKEAGIKP 249
Y+ Q V +TV +A+ R R + + EL + AG P
Sbjct: 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP 136
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 23/198 (11%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET--FTRISGYCEQNDI 905
G +G SG GK+TL+ ++AG +T SG++ I G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI-GEKRMNDTPPAERGVGMVFQSYA 85
Query: 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL---KPLRQSLVGLPGESGL 962
P ++V E++ + L + R + E+++L L KP L
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KAL 134
Query: 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET--GRTVVCTIHQ 1020
S QR+R+ I LVA PS+ +D+P S LDA A + MR + + GRT++ H
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 1021 PSIDIFEAFDELFLMKRG 1038
++ D++ ++ G
Sbjct: 194 -QVEAMTLADKIVVLDAG 210
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 99/244 (40%), Gaps = 45/244 (18%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTA 200
D++ I G + +GP GK+TLL +AG L++ SG + MN+ P +R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LETI--TSGDLFIGEKRMNDTPPAERGV 77
Query: 201 AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAA 260
+ Q ++V E ++F + G A++E I+ +
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAG-----------AKKE---------VINQRVNQV 117
Query: 261 ATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMD 320
A Q A++L D + +SGGQ++R+ G +V +D
Sbjct: 118 AEVLQLAHLL-------------------DRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158
Query: 321 EISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG- 379
+ + LD++ + + + +H G +I + E L D I++L G++ G
Sbjct: 159 QPLSNLDAALRVQMRIEISR-LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
Query: 380 PCEL 383
P EL
Sbjct: 218 PLEL 221
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 12/200 (6%)
Query: 819 ADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGG 875
+D+ E++ V+ + + G+ G + L+G +GAGKTT + +AG + G
Sbjct: 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 876 YISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKM 935
I I+ P I+ E I P +TVYE+L A+ R D E K
Sbjct: 63 IIFNGQDITNKPAHVINRXGIALVPEGRRIF-PELTVYENLXXGAYNR----KDKEGIKR 117
Query: 936 FIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
+E I L L++ L L G LS +++ L I L + P ++ DEP+ GL
Sbjct: 118 DLEWIFSL--FPRLKERLKQLGGT--LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPI 173
Query: 996 AAAIVMRTVKNTVETGRTVV 1015
+ V ++ + G T++
Sbjct: 174 LVSEVFEVIQKINQEGTTIL 193
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 62/246 (25%), Positives = 98/246 (39%), Gaps = 58/246 (23%)
Query: 150 GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN----EFVPQRTAAYISQ 205
G++ L+G +GKTT L A+AG + + G++ +NG D+ + + A + +
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRXGIALVPE 88
Query: 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL--FIDVFMKAAATE 263
E+TV E L A Y+ R++KE GIK DL +F +
Sbjct: 89 GRRIFPELTVYENLXXGA--------YN------RKDKE-GIKRDLEWIFSLFPRLKER- 132
Query: 264 GQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEIS 323
LK LG +SGG+++ L G + L DE S
Sbjct: 133 -----------LKQLG--------------GTLSGGEQQXLAIGRALXSRPKLLXXDEPS 167
Query: 324 NGLDS---STTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 380
GL S F ++ + Q GT ++ + Q A + +L GQIV +G
Sbjct: 168 LGLAPILVSEVFEVIQKINQ-----EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGK 222
Query: 381 CELVLD 386
+LD
Sbjct: 223 ASELLD 228
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 17/191 (8%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG----YPKKQET 892
+L G+S + + G +++G SG+GK+TL+ +L G + + G Y ++E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 893 F---TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
R G+ Q P +T E+++ + + +++ R ++ L EL L
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LSELG-L 130
Query: 950 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009
L P E LS +++R+ IA L P ++F DEPT LD+ VM E
Sbjct: 131 GDKLSRKPYE--LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 1010 TGRTVVCTIHQ 1020
G ++V H+
Sbjct: 189 GGTSIVMVTHE 199
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 58/244 (23%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN-------EFV 195
+S +K G ++G SGK+TLL L G LD+ G+V G +++ +
Sbjct: 23 ISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP--TEGKVFLEGKEVDYTNEKELSLL 79
Query: 196 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
R ++ Q I E+T E + I P L +
Sbjct: 80 RNRKLGFVFQFHYLIPELTALENV---------------------------IVPMLKMGK 112
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG---ISGGQKKRLTTGEMMVG 312
K A G+ Y L LGL GD++ R +SGG+++R+ +
Sbjct: 113 PKKEAKERGE-------YLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALAN 157
Query: 313 PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372
+ LF DE + LDS+ T +++ + I G I ++ E +L + + D
Sbjct: 158 EPILLFADEPTGNLDSANTKRVMDIF---LKINEGGTSIVMVTHERELAELTHRTLEMKD 214
Query: 373 GQIV 376
G++V
Sbjct: 215 GKVV 218
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 841 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGNITISGY------PKKQ 890
+S + G L+G SG GKTT + +AG T G YI N+ PK++
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKER 84
Query: 891 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL--RTEVDSETRKMFIEEIMELVELKP 948
+ Y P TVY+++ + LR + E+D R+ + E + L EL
Sbjct: 85 DVAXVFQSYALY-----PHXTVYDNIAFPLKLRKVPKQEIDKRVRE--VAEXLGLTEL-- 135
Query: 949 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
L P E LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 136 ----LNRKPRE--LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 49/194 (25%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH-----DMNEFVP 196
D+S IK G +LLGP GKTT L +AG + + G++ + + FVP
Sbjct: 24 DLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPT---RGQIYIEDNLVADPEKGVFVP 80
Query: 197 --QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
+R A + Q TV + +AF + + V + E+ +R +E
Sbjct: 81 PKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQ-----EIDKRVREVA-------- 127
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
+ LGL T + + R +SGGQ++R+ G ++
Sbjct: 128 ---------------------EXLGL-----TELLNRKPRELSGGQRQRVALGRAIIRRP 161
Query: 315 LALFMDEISNGLDS 328
DE + LD+
Sbjct: 162 KVFLXDEPLSNLDA 175
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 36/222 (16%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---SGNIT---------- 882
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + +IT
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 883 ------ISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMF 936
+ P K+ T E N SPL SL Y W+ E+ K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWIPKEEEM---VEKAF 135
Query: 937 IEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996
+I+E ++L L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 997 AAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
A + V G T + H+ I + D L++M G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 88/241 (36%), Gaps = 43/241 (17%)
Query: 150 GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAY----ISQ 205
G +TL++GP SGK+TL+ + G L + GRV + D+ P Y Q
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQ 89
Query: 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQ 265
+ EMTV E L E G P +F K + +
Sbjct: 90 TPQPLKEMTVLENLLIG-------------------EINPGESP--LNSLFYKKWIPKEE 128
Query: 266 EANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNG 325
E L+ L L D G+ +SGGQ K + G ++ + MDE G
Sbjct: 129 EMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
Query: 326 LDSSTTFHIVNSLRQNIHIL----NGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPC 381
+ I N H+L G + + + D + ++ +GQI+ +G
Sbjct: 184 VAPGLAHDIFN------HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237
Query: 382 E 382
E
Sbjct: 238 E 238
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 95/222 (42%), Gaps = 36/222 (16%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---SGNIT---------- 882
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + +IT
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 883 ------ISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMF 936
+ P K+ T E N SPL SL Y W+ E+ K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWIPKEEEM---VEKAF 135
Query: 937 IEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996
+I+E ++L L G LS Q K + I L+ NP +I MD+P +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGL 188
Query: 997 AAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
A + V G T + H+ I + D L++M G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAY 202
VS + G +TL++GP SGK+TL+ + G L + GRV + D+ P Y
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHY 82
Query: 203 ----ISQHDVHIGEMTVRETL 219
Q + EMTV E L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENL 103
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 34/217 (15%)
Query: 814 DVTYSADMPKEMK----LKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 869
D+ S D+ +MK +K + + +LV+ NG + + G + ++G +G GKTT +L
Sbjct: 259 DLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA---KEGEIIGILGPNGIGKTTFARILV 315
Query: 870 GRKTG--GYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTE 927
G T G ++ I Y K Q F G +Q ++ ++L S+W
Sbjct: 316 GEITADEGSVTPEKQILSY-KPQRIFPNYDGTVQQYLENAS----KDALSTSSW------ 364
Query: 928 VDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 987
F EE+ + + L L +S V + LS + ++L IA L + +D+
Sbjct: 365 --------FFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQ 411
Query: 988 PTSGLDARAAAIVMRTVKNTVETGRTVVCTI-HQPSI 1023
P+S LD IV + +K + V I H SI
Sbjct: 412 PSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 24/183 (13%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISG---YCEQ 902
+ + ++G +G GKTT++ +LAG + N + K E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 903 NDIHSPLVTVYESLLY----SAWLR-----LRTEVDSETRKMFIEEIMELVELKPLRQSL 953
+++S + + + Y S +L+ + T++D +K +E+ EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKD 135
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
+ GL +RL +A L+ + D+P+S LD R + + ++ ++
Sbjct: 136 ANILSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYV 190
Query: 1014 VVC 1016
+V
Sbjct: 191 IVV 193
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 15/195 (7%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY---PKKQETFTRISGYCEQND 904
G AL+G +G+GK+T+ +L G+I I G + + I G Q+
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGGKNVNKYNRNSIRSIIGIVPQDT 102
Query: 905 IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-QSLVGLPGESGLS 963
I Y ++LY EV T+ ++ + +E P + ++VG G LS
Sbjct: 103 ILFNETIKY-NILYGKLDATDEEVIKATKSA---QLYDFIEALPKKWDTIVGNKGMK-LS 157
Query: 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1023
+R+R+ IA L+ +P I+ DE TS LD++ + + V++ + RT++ H+ S
Sbjct: 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLS- 215
Query: 1024 DIFEAFDELFLMKRG 1038
+ + + L+ +G
Sbjct: 216 -TISSAESIILLNKG 229
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTF---HIVNSLRQN 341
DT+VG++ ++ +SGG+++R+ ++ + DE ++ LDS T + V LR+N
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 342 IHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVL 385
++ +S + A + IILL+ G+IV +G + +L
Sbjct: 205 RTLIIIAHRLSTISSA-------ESIILLNKGKIVEKGTHKDLL 241
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 102/238 (42%), Gaps = 48/238 (20%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF--VPQRTAAYIS 204
I G+ L+G SGK+T+ + D G + +GHD+ E+ R +
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALV 422
Query: 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEG 264
+VH+ TV +A+ AR + E +R + E + +D K
Sbjct: 423 SQNVHLFNDTVANNIAY-ARTE----------EYSREQIEEAARMAYAMDFINK------ 465
Query: 265 QEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISN 324
+D DT++G+ V +SGGQ++R+ ++ + L +DE ++
Sbjct: 466 ---------------MDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATS 509
Query: 325 GLDSSTTFHI---VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
LD+ + I ++ L++N L +S ++ A D+I+++ DG IV +G
Sbjct: 510 ALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQA-------DEIVVVEDGIIVERG 560
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 21/199 (10%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCE--QNDI 905
G AL+G SG+GK+T+ ++ + G+I + G+ ++ T + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE----LKPLRQSLVGLPGESG 961
H TV ++ Y+ RTE E + IEE + + + L + GE+G
Sbjct: 427 HLFNDTVANNIAYA-----RTE---EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENG 478
Query: 962 --LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
LS QR+R+ IA L+ + I+ +DE TS LD + + + + ++ RT + H
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAH 537
Query: 1020 QPSIDIFEAFDELFLMKRG 1038
+ S E DE+ +++ G
Sbjct: 538 RLS--TIEQADEIVVVEDG 554
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1020
LS Q++R++IA L P ++ DEPTS LD V+R ++ E G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 23/159 (14%)
Query: 853 LMGVSGAGKTTLMDVLAG--RKTGGYISGN-ITISGYPKKQETFTRISGYCEQNDIHSPL 909
L+G +GAGK+ ++++AG + G + N I+ P ++ R G+ Q+ P
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFPH 84
Query: 910 VTVYESLLYSAWLRLRTEVDSETRKMFIEE---IMELVELKPLRQSLVGLPGESGLSTEQ 966
++VY ++ Y LR V+ + R + E I L++ KP R LS +
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGE 131
Query: 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
R+R+ +A LV P ++ +DEP S +D + ++M ++
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 154 LLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTA-AYISQHDVHIGE 212
+LLGP +GK+ L +AG + G V NG D+ P+R ++ Q
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 213 MTVRETLAFSAR 224
++V +A+ R
Sbjct: 85 LSVYRNIAYGLR 96
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 26/204 (12%)
Query: 825 MKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITIS 884
M+L+ V E L +SG R G + L+G +GAGK+TL+ +AG +G G+I +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 885 GYPKKQETFTRIS---GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIM 941
G P + + T+++ Y Q P T W L +TR + ++
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVA 111
Query: 942 ELVEL-KPLRQSLVGLPGESGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDAR 995
+ L L +S L G QR RL V + ANP+ ++ +D+P + LD
Sbjct: 112 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVA 167
Query: 996 AAAIVMRTVKNTVETGRTVVCTIH 1019
+ + + + + G +V + H
Sbjct: 168 QQSALDKILSALSQQGLAIVMSSH 191
Score = 34.3 bits (77), Expect = 0.52, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTA-- 200
+SG ++ G + L+GP +GK+TLL +AG G + + G + + + A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALH 74
Query: 201 -AYISQH 206
AY+SQ
Sbjct: 75 RAYLSQQ 81
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 105/251 (41%), Gaps = 51/251 (20%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRTAAYIS 204
I G+ L+G SGK+T+ + D G + +GHD+ E+ R +
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDID---EGEILMDGHDLREYTLASLRNQVALV 422
Query: 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEG 264
+VH+ TV +A+ AR + + +R + E + +D K
Sbjct: 423 SQNVHLFNDTVANNIAY-ARTE----------QYSREQIEEAARMAYAMDFINK------ 465
Query: 265 QEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISN 324
+D DT++G+ V +SGGQ++R+ ++ + L +DE ++
Sbjct: 466 ---------------MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATS 509
Query: 325 GLDSSTTFHI---VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPC 381
LD+ + I ++ L++N L +S ++ A D+I+++ DG IV +G
Sbjct: 510 ALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA-------DEIVVVEDGVIVERGTH 562
Query: 382 ELVLDFFESMG 392
D E G
Sbjct: 563 N---DLLEHRG 570
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 21/199 (10%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCE--QNDI 905
G AL+G SG+GK+T+ ++ + G I + G+ ++ T + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE----LKPLRQSLVGLPGESG 961
H TV ++ Y+ RTE S + IEE + + + L + GE+G
Sbjct: 427 HLFNDTVANNIAYA-----RTEQYSREQ---IEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 962 --LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
LS QR+R+ IA L+ + I+ +DE TS LD + + + + ++ RT + H
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAH 537
Query: 1020 QPSIDIFEAFDELFLMKRG 1038
+ S E DE+ +++ G
Sbjct: 538 RLS--TIEKADEIVVVEDG 554
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 26/217 (11%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L +SG R G + L+G +GAGK+TL+ AG +G G+I +G P + + T+++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 898 ---GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL-KPLRQSL 953
Y Q P T W L +TR + ++ + L L +S
Sbjct: 73 LHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST 124
Query: 954 VGLPGESGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVKNTV 1008
L G QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 125 NQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALC 180
Query: 1009 ETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045
+ G +V + H + + A L +GG+ + G
Sbjct: 181 QQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTA-- 200
+SG ++ G + L+GP +GK+TLL AG G + + G + + + A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG----KGSIQFAGQPLEAWSATKLALH 74
Query: 201 -AYISQH 206
AY+SQ
Sbjct: 75 RAYLSQQ 81
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 97/213 (45%), Gaps = 18/213 (8%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---SGNITISGYPKKQET 892
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + +IT K+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT-----NKEPA 77
Query: 893 FTRISGYCEQNDIHSPL--VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE----- 945
G PL +TV E+LL + ++S K +I + E+VE
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 946 LKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
L+ L+ S + LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 1006 NTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
G T + H+ I + D L++M G
Sbjct: 198 ELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 92/248 (37%), Gaps = 43/248 (17%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAY 202
VS + G +TL++GP SGK+TL+ + G L + GRV + D+ P Y
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHY 82
Query: 203 ----ISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
Q + EMTV E L C G + + ++E ++ I F+K
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALF 318
+ ++A L SGGQ K + G ++ +
Sbjct: 143 LSHLYDRKAGEL--------------------------SGGQMKLVEIGRALMTNPKMIV 176
Query: 319 MDEISNGLDSSTTFHIVNSLRQNIHIL----NGTAVISLLQPAPETYDLFDDIILLSDGQ 374
MDE G+ I N H+L G + + + D + ++ +GQ
Sbjct: 177 MDEPIAGVAPGLAHDIFN------HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230
Query: 375 IVYQGPCE 382
I+ +G E
Sbjct: 231 IIAEGRGE 238
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 14/184 (7%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK------QETFTRISGY 899
+ G + ++G +G GK+T + +LAG+ N + G + Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 900 CEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGE 959
+ + V + + + L + D ET K+ EE+++ +EL+ + + +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKAD-ETGKL--EEVVKALELENVLEREI----- 156
Query: 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
LS + +R+ IA L+ N + F DEP+S LD R R ++ E G++V+ H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 1020 QPSI 1023
++
Sbjct: 217 DLAV 220
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 37/240 (15%)
Query: 805 FEPYSLTFDDVTYSADMPKEMKL---KGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 861
F PY + F ++ +E + + V + L G + G + ++G +G GK
Sbjct: 266 FRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGK 325
Query: 862 TTLMDVLAG--RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYS 919
TT + LAG T G I ++T++ P+ Y + + YE +Y
Sbjct: 326 TTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----------YIKAD---------YEGTVYE 366
Query: 920 AWLRLRTEVD-SETRKMFIEEIMELVELKPLRQSLVGLPGE--SGLSTEQRKRLTIAVEL 976
L +++D S+ F + EL LKPL ++ L + LS + +R+ IA L
Sbjct: 367 ----LLSKIDASKLNSNFYK--TEL--LKPL--GIIDLYDREVNELSGGELQRVAIAATL 416
Query: 977 VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036
+ + I +DEP++ LD V R +++ E + + I D L + +
Sbjct: 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFE 476
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 26/204 (12%)
Query: 825 MKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITIS 884
M+L+ V E L +SG R G + L+G +GAGK+TL+ +AG +G G+I +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 885 GYPKKQETFTRIS---GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIM 941
G P + + T+++ Y Q P T W L +TR + ++
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVA 111
Query: 942 ELVEL-KPLRQSLVGLPGESGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDAR 995
+ L L +S L G QR RL V + ANP+ ++ +D+P LD
Sbjct: 112 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVA 167
Query: 996 AAAIVMRTVKNTVETGRTVVCTIH 1019
+ + + + + G +V + H
Sbjct: 168 QQSALDKILSALSQQGLAIVMSSH 191
Score = 34.3 bits (77), Expect = 0.51, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTA-- 200
+SG ++ G + L+GP +GK+TLL +AG G + + G + + + A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALH 74
Query: 201 -AYISQH 206
AY+SQ
Sbjct: 75 RAYLSQQ 81
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 26/217 (11%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L +SG R G + L+G +GAGK+TL+ AG +G G+I +G P + + T+++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 898 ---GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL-KPLRQSL 953
Y Q P T W L +TR + ++ + L L +S
Sbjct: 73 LHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST 124
Query: 954 VGLPGESGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVKNTV 1008
L G QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 125 NQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALS 180
Query: 1009 ETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045
+ G +V + H + + A L +GG+ + G
Sbjct: 181 QQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTA-- 200
+SG ++ G + L+GP +GK+TLL AG G + + G + + + A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG----KGSIQFAGQPLEAWSATKLALH 74
Query: 201 -AYISQH 206
AY+SQ
Sbjct: 75 RAYLSQQ 81
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 17/193 (8%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYISGNITISGYPKKQETFTR 895
LN VS G + ++G SGAGK+TL+ L R T G++ + G QE T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDG----QELTTL 95
Query: 896 ISGYCEQNDIHSPLVTVYESLLYS----AWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
+ + + +LL S + L E+D+ + + EL+ L L
Sbjct: 96 SESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 155
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVET 1010
P S LS Q++R+ IA L +NP ++ D+ TS LD ++ +K+
Sbjct: 156 KHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 1011 GRTVVCTIHQPSI 1023
G T++ H+ +
Sbjct: 214 GLTILLITHEXDV 226
Score = 35.4 bits (80), Expect = 0.23, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTA 349
D +SGGQK+R+ + L D+ ++ LD +TT I+ L+ +I+ G
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLT 216
Query: 350 VISLLQPAPETYDLFDDIILLSDGQIVYQ 378
++ + + D + ++S+G+++ Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQ 245
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 21/194 (10%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTRISGYCEQNDI 905
G + A++G +G GK+TL+D+L G R G I +I P + F+ Y
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVP---QFFSSPFAY------ 81
Query: 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965
S+L + T +++ + + + + L L + + + LS
Sbjct: 82 ---------SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGG 132
Query: 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSID 1024
QR+ + IA + + +I +DEPTS LD IV+ + + ++ TVV T HQP+
Sbjct: 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192
Query: 1025 IFEAFDELFLMKRG 1038
+ A L L K+
Sbjct: 193 VAIANKTLLLNKQN 206
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYISGNITISGYPKKQETFTR 895
LN VS G + ++G SGAGK+TL+ L R T G++ + G QE T
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDG----QELTTL 72
Query: 896 ISGYCEQNDIHSPLVTVYESLLYS----AWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
+ ++ + +LL S + L E+D+ + + EL+
Sbjct: 73 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELL------- 125
Query: 952 SLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
SLVGL + S LS Q++R+ IA L +NP ++ DE TS LD ++ +K+
Sbjct: 126 SLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185
Query: 1007 -TVETGRTVVCTIHQ 1020
G T++ H+
Sbjct: 186 INRRLGLTILLITHE 200
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTA 349
D +SGGQK+R+ + L DE ++ LD +TT I+ L+ +I+ G
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK-DINRRLGLT 193
Query: 350 VISLLQPAPETYDLFDDIILLSDGQIVYQ 378
++ + + D + ++S+G+++ Q
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQ 222
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 25/170 (14%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG-YPKK----QE 891
+L +S G L G++GAGKTTL+++L + SG + + G P K E
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVGYSAE 93
Query: 892 TFTRISGYCEQNDIHSPLVTVYES------LLYSAW--LRLRTEVDSETRKMFIEEIMEL 943
T + G+ HS L E ++ A+ + + ++D E R ++++L
Sbjct: 94 TVRQHIGFVS----HSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKL 148
Query: 944 VELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
V Q +G LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 149 VGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 275 LKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHI 334
LK++G A +G +S G+K+R+ + G L +DE + GLD +
Sbjct: 146 LKLVGXSAKAQQYIG-----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESL 200
Query: 335 VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVL 385
++ L A I + E F I+LL DGQ + QG E +L
Sbjct: 201 LSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 105/260 (40%), Gaps = 55/260 (21%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR-TAAYISQ 205
++ G ++LGP +GKT L +AG + SGR+ +G D+ + P++ A++ Q
Sbjct: 23 VESGEYFVILGPTGAGKTLFLELIAG---FHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79
Query: 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQ 265
+ M V++ L F R + + +L + AR DL I+ +
Sbjct: 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVL-DTAR---------DLKIEHLL-------- 121
Query: 266 EANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNG 325
+ N LT +SGG+++R+ +V L +DE +
Sbjct: 122 DRNPLT------------------------LSGGEQQRVALARALVTNPKILLLDEPLSA 157
Query: 326 LDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVL 385
LD T + + +H N V+ + E + D I ++ DG+++ G E +
Sbjct: 158 LDPRTQEN-AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI- 215
Query: 386 DFFESMGFKCPERKSVADFL 405
F+ P VA F+
Sbjct: 216 -------FEKPVEGRVASFV 228
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 45/194 (23%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY------PKKQE 891
L+ +S G ++G +GAGKT ++++AG SG I + G P+K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPEKHD 73
Query: 892 TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSE-----TRKMFIEEIMELVEL 946
+ QN P + V ++L + +R++ D + R + IE L++
Sbjct: 74 I-----AFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDPKRVLDTARDLKIEH---LLDR 123
Query: 947 KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
PL LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 124 NPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR----------- 161
Query: 1007 TVETGRTVVCTIHQ 1020
T E R ++ +H+
Sbjct: 162 TQENAREMLSVLHK 175
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 23/210 (10%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L VS G + G +G+GK+TL+ ++AG SG++ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNI 80
Query: 898 GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP 957
G Q Y + A R+ EV + + + + V L VGL
Sbjct: 81 GIAFQ----------YPEDQFFAE-RVFDEVAFAVKNFYPDR--DPVPLVKKAMEFVGLD 127
Query: 958 GESG-------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1010
+S LS +++R+ IA +V P I+ +DEP GLD ++R V+
Sbjct: 128 FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187
Query: 1011 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040
G+TV+ H + D + ++++G +
Sbjct: 188 GKTVILISHDIET-VINHVDRVVVLEKGKK 216
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 42/238 (17%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAA 201
+VS +I G L+ G SGK+TLL +AG ++ + SG V Y+G +R
Sbjct: 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDG--------ERKKG 73
Query: 202 YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAA 261
Y + ++ I E F+ R + E+A K PD
Sbjct: 74 YEIRRNIGIA-FQYPEDQFFAER---------VFDEVAFAVK--NFYPD----------- 110
Query: 262 TEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDE 321
++ L ++ +GLD + D + +SGG+K+R+ ++V L +DE
Sbjct: 111 ---RDPVPLVKKAMEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164
Query: 322 ISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
GLD ++ + + + G VI + + D +++L G+ V+ G
Sbjct: 165 PLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKGKKVFDG 220
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 23/210 (10%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L VS G + G +G+GK+TL+ ++AG SG++ G KK R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNI 82
Query: 898 GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP 957
G Q Y + A R+ EV + + + + V L VGL
Sbjct: 83 GIAFQ----------YPEDQFFAE-RVFDEVAFAVKNFYPDR--DPVPLVKKAMEFVGLD 129
Query: 958 GESG-------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1010
+S LS +++R+ IA +V P I+ +DEP GLD ++R V+
Sbjct: 130 FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 189
Query: 1011 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040
G+TV+ H + D + ++++G +
Sbjct: 190 GKTVILISHDIET-VINHVDRVVVLEKGKK 218
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 42/238 (17%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAA 201
+VS +I G L+ G SGK+TLL +AG ++ + SG V Y+G +R
Sbjct: 27 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDG--------ERKKG 75
Query: 202 YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAA 261
Y + ++ I E F+ R + E+A K PD
Sbjct: 76 YEIRRNIGIA-FQYPEDQFFAER---------VFDEVAFAVK--NFYPD----------- 112
Query: 262 TEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDE 321
++ L ++ +GLD + D + +SGG+K+R+ ++V L +DE
Sbjct: 113 ---RDPVPLVKKAMEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 166
Query: 322 ISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
GLD ++ + + + G VI + + D +++L G+ V+ G
Sbjct: 167 PLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKGKKVFDG 222
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYISGNITISGYPKKQETFTR 895
LN VS G + ++G SGAGK+TL+ L R T G++ + G QE T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDG----QELTTL 95
Query: 896 ISGYCEQNDIHSPLVTVYESLLYS----AWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
+ ++ + +LL S + L E+D+ + + EL+
Sbjct: 96 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELL------- 148
Query: 952 SLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
SLVGL + S LS Q++R+ IA L +NP ++ D+ TS LD ++ +K+
Sbjct: 149 SLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 1007 -TVETGRTVVCTIHQ 1020
G T++ H+
Sbjct: 209 INRRLGLTILLITHE 223
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQ 355
+SGGQK+R+ + L D+ ++ LD +TT I+ L+ +I+ G ++ +
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLTILLITH 222
Query: 356 PAPETYDLFDDIILLSDGQIVYQ 378
+ D + ++S+G+++ Q
Sbjct: 223 EMDVVKRICDCVAVISNGELIEQ 245
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 107/232 (46%), Gaps = 24/232 (10%)
Query: 824 EMKLKGV---HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGN 880
E++ K V ++ K +L ++ +PG AL+G +G+GKTT++++L + G
Sbjct: 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQ 411
Query: 881 ITISGY---PKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETR---- 933
I + G K+ + G Q+ I TV E+L Y E+ +
Sbjct: 412 ILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNPGATDEEIKEAAKLTHS 470
Query: 934 KMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
FI+ + E E +++ GE LS QR+ L I +ANP I+ +DE TS +D
Sbjct: 471 DHFIKHLPEGYE------TVLTDNGED-LSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Query: 994 ARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045
+ + + +E G+T + H+ ++ + D L ++ R G+ + +G
Sbjct: 524 TKTEKSIQAAMWKLME-GKTSIIIAHR--LNTIKNAD-LIIVLRDGEIVEMG 571
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 107/254 (42%), Gaps = 46/254 (18%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ--RT 199
D++ IKPG+ L+GP SGKTT++ L D G++ +G D+ + R+
Sbjct: 373 DITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRS 429
Query: 200 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKA 259
+ I D + TV+E L + G+ + + E A+ D F+K
Sbjct: 430 SIGIVLQDTILFSTTVKENLKYG----NPGATDEEIKEAAKLTHS---------DHFIKH 476
Query: 260 AATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFM 319
EG E VLTD G+++ S GQ++ L + L +
Sbjct: 477 LP-EGYET-VLTDN---------------GEDL----SQGQRQLLAITRAFLANPKILIL 515
Query: 320 DEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
DE ++ +D+ T I ++ + ++ G I ++ T D II+L DG+IV G
Sbjct: 516 DEATSNVDTKTEKSIQAAMWK---LMEGKTSI-IIAHRLNTIKNADLIIVLRDGEIVEMG 571
Query: 380 PCELVLDFFESMGF 393
+ + + GF
Sbjct: 572 KHD---ELIQKRGF 582
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 31/196 (15%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQN-- 903
RPG + L+G +G GK+T + +LAG++ P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR----FDDPPEWQEIIKYFRGSELQNYF 156
Query: 904 ------DIHSPLVTVYESLLYSA----------WLRLRTEVDSETRKMFIEEIMELVELK 947
DI + + Y + A L+LR E E K +I+ I++L +
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIK-ILQLENV- 214
Query: 948 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007
L++ + LS + +R I + V + DEP+S LD + + +++
Sbjct: 215 -LKRDI------EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267
Query: 1008 VETGRTVVCTIHQPSI 1023
+ + V+C H S+
Sbjct: 268 LAPTKYVICVEHDLSV 283
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 28/171 (16%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFT 894
+LN G F + +MG +G GKTTL+ +LAG + G + +S P Q+
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKP--QKIAP 424
Query: 895 RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLV 954
+ G Q L + + R F+ + +KPLR +
Sbjct: 425 KFPGTVRQ-------------LFF-----------KKIRGQFLNPQFQTDVVKPLRIDDI 460
Query: 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
LS + +R+ I + L I +DEP++ LD+ I + ++
Sbjct: 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 39/241 (16%)
Query: 805 FEPYSLTFDDVTYSADMPKEMKL---KGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 861
F PY + F ++ D+ +E + + V + L G R G + ++G +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 862 TTLMDVLAG--RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYS 919
TT + +LAG T G + ++T++ P+ + YE +Y
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQY-------------------IKAEYEGTVYE 436
Query: 920 AWLRLRTEVDSE--TRKMFIEEIMELVELKPLRQSLVGLPGES--GLSTEQRKRLTIAVE 975
L +++DS + E+ LKPL ++ L + LS + +R+ IA
Sbjct: 437 ----LLSKIDSSKLNSNFYKTEL-----LKPL--GIIDLYDRNVEDLSGGELQRVAIAAT 485
Query: 976 LVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035
L+ + I +DEP++ LD V R +++ +E + + I D L +
Sbjct: 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 545
Query: 1036 K 1036
+
Sbjct: 546 E 546
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 20/187 (10%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK------QETFTRISGY 899
+ G++ ++G +G GKTT + +LAG+ N + + Q F R+
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL--- 171
Query: 900 CEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMF--IEEIMELVELKPLRQSLVGLP 957
+ +I + Y LL A V + R++ ++E+ + E+ + L
Sbjct: 172 -KNGEIRPVVKPQYVDLLPKA-------VKGKVRELLKKVDEVGKFEEVVKELELENVLD 223
Query: 958 GE-SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC 1016
E LS + +R+ IA L+ F DEP+S LD R V R ++ G+ V+
Sbjct: 224 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283
Query: 1017 TIHQPSI 1023
H ++
Sbjct: 284 VEHDLAV 290
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL 178
I+K G + ++GP +GKTT + LAGQL +L
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL 145
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 24/239 (10%)
Query: 803 LPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 862
L F+ + F++V +S + D L VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFS------------YADGRETLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 863 TLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLV--TVYESLLYSA 920
T++ +L + SG I I G Q T + + + L T+ +++ Y
Sbjct: 95 TILRLLF--RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGR 152
Query: 921 WLRLRTEVDSETRKMFIEE-IMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVAN 979
EV++ + I + IM E + GL LS +++R+ IA ++
Sbjct: 153 VTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK----LSGGEKQRVAIARTILKA 208
Query: 980 PSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
P II +DE TS LD + ++ V RT + H+ S + D++ ++K G
Sbjct: 209 PGIILLDEATSALDTSNERAIQASLAK-VCANRTTIVVAHRLSTVV--NADQILVIKDG 264
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 43/246 (17%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAA 201
DVS + PG+ L+GP +GK+T+L L D S SG + +G D + Q T A
Sbjct: 72 DVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQD----ISQVTQA 124
Query: 202 YISQHDVHIGEMTV--RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKA 259
+ H + + TV +T+A + R V + D E+ + AGI D M
Sbjct: 125 SLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGND---EVEAAAQAAGIH-----DAIM-- 174
Query: 260 AATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFM 319
A EG T VG+ ++ +SGG+K+R+ ++ + +
Sbjct: 175 AFPEGYR-------------------TQVGERGLK-LSGGEKQRVAIARTILKAPGIILL 214
Query: 320 DEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
DE ++ LD+S I SL + N T ++ + + T D I+++ DG IV +G
Sbjct: 215 DEATSALDTSNERAIQASLAKV--CANRTTIVVAHRLS--TVVNADQILVIKDGCIVERG 270
Query: 380 PCELVL 385
E +L
Sbjct: 271 RHEALL 276
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 39/241 (16%)
Query: 805 FEPYSLTFDDVTYSADMPKEMKL---KGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 861
F PY + F ++ D+ +E + + V + L G R G + ++G +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 862 TTLMDVLAG--RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYS 919
TT + +LAG T G + ++T++ P Q G TVYE L
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYELL--- 424
Query: 920 AWLRLRTEVDSE--TRKMFIEEIMELVELKPLRQSLVGLPGES--GLSTEQRKRLTIAVE 975
+++DS + E+ LKPL ++ L + LS + +R+ IA
Sbjct: 425 ------SKIDSSKLNSNFYKTEL-----LKPL--GIIDLYDRNVEDLSGGELQRVAIAAT 471
Query: 976 LVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035
L+ + I +DEP++ LD V R +++ +E + + I D L +
Sbjct: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 531
Query: 1036 K 1036
+
Sbjct: 532 E 532
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 20/187 (10%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK------QETFTRISGY 899
+ G++ ++G +G GKTT + +LAG+ N + + Q F R+
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL--- 157
Query: 900 CEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMF--IEEIMELVELKPLRQSLVGLP 957
+ +I + Y LL A V + R++ ++E+ + E+ + L
Sbjct: 158 -KNGEIRPVVKPQYVDLLPKA-------VKGKVRELLKKVDEVGKFEEVVKELELENVLD 209
Query: 958 GE-SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC 1016
E LS + +R+ IA L+ F DEP+S LD R V R ++ G+ V+
Sbjct: 210 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 269
Query: 1017 TIHQPSI 1023
H ++
Sbjct: 270 VEHDLAV 276
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL 178
I+K G + ++GP +GKTT + LAGQL +L
Sbjct: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL 131
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 25/187 (13%)
Query: 853 LMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP-KKQETFTRISGYCEQNDIHSPLVT 911
++G +G+GKTTL+ ++G SGNI I+G +K + R S + L
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYS---------TNLPE 82
Query: 912 VYE-SLLYSAWLRLRTEVDSETRKMFIEEIMEL-VELKPLRQSLVGLPGESGLSTEQRKR 969
YE + + + L E+ R +F+E + L + + LR+ L L +G S R
Sbjct: 83 AYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKL--SAGQSVLVRTS 140
Query: 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ-PSIDIFEA 1028
L +A + P I+ +DEP +DA ++ R +K E G+ + H+ +++++
Sbjct: 141 LALA----SQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHELDMLNLYKE 193
Query: 1029 FDELFLM 1035
+ FL+
Sbjct: 194 YKAYFLV 200
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 150 GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE 193
G ++LGP SGKTTLL A++G L SG + NG ++ +
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGL----LPYSGNIFINGMEVRK 69
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 25/171 (14%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYISGNITISGYPKKQETFTR 895
LNG++ + G L A++G G GK++L+ L K G+++ +++ P++
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWI--- 77
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVG 955
QND ++ E++L+ L + + I+ L +L+ L
Sbjct: 78 ------QND------SLRENILFGCQL------EEPYYRSVIQACALLPDLEILPSGDRT 119
Query: 956 LPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
GE G LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 120 EIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 25/219 (11%)
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YISGNITISGY 886
H + L+N VS G + A++G +GAGK+TL+ +L G + ++ G S
Sbjct: 20 HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ 79
Query: 887 PKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL 946
PK R Q + +V E + R + ++++M +
Sbjct: 80 PK---ALARTRAVMRQYSELAFPFSVSEVIQMG-----RAPYGGSQDRQALQQVMAQTDC 131
Query: 947 KPLRQSLVGLPGESGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIV 1000
L Q + LS +++R+ +A L P +F+DEPTS LD
Sbjct: 132 LALAQRDYRV-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHT 186
Query: 1001 MRTVKN-TVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+R ++ T + V C +H ++ A D + L+ +G
Sbjct: 187 LRLLRQLTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQG 224
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 62/254 (24%), Positives = 97/254 (38%), Gaps = 54/254 (21%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ---R 198
DVS I G M ++GP +GK+TLL L G L S G G ++N + P+ R
Sbjct: 29 DVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALAR 85
Query: 199 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
T A + Q+ +V E + G ++++A +
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYG-----------GSQDRQA----------LQQ 124
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV---GPAL 315
A A DY R +SGG+++R+ ++ P
Sbjct: 125 VMAQTDCLALAQRDY--------------------RVLSGGEQQRVQLARVLAQLWQPQP 164
Query: 316 A---LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372
LF+DE ++ LD H + LRQ + AV +L D I+LL+
Sbjct: 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQ-LTRQEPLAVCCVLHDLNLAALYADRIMLLAQ 223
Query: 373 GQIVYQGPCELVLD 386
G++V G E VL+
Sbjct: 224 GKLVACGTPEEVLN 237
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 77/189 (40%), Gaps = 23/189 (12%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETF 893
+L +S + PG L+G +G+GK+TL+ G I I G E +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 894 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK------ 947
+ G Q + ++S R + ++ I ++ + V L+
Sbjct: 93 RKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQF 141
Query: 948 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007
P + V + G LS ++ + +A +++ I+ +DEP++ LD I+ RT+K
Sbjct: 142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201
Query: 1008 VETGRTVVC 1016
++C
Sbjct: 202 FADCTVILC 210
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-DV 867
S+ + S D +++ + G E L G+ +F GVLT++ GVSG+GK+TL+ D+
Sbjct: 632 SIEIPAIRRSVDPRRQLTVVGAREHNL---RGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688
Query: 868 LA 869
LA
Sbjct: 689 LA 690
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 150 GRMTLLLGPPSSGKTTLLLALAGQLDSSL 178
GR LL GPP +GKT L LA+A +L S +
Sbjct: 77 GRAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
I+ G M + G SGKT+LL+ + G+L++S +K SGRV++
Sbjct: 61 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 150 GRMTLLLGPPSSGKTTLLLALAGQLDSSL 178
GR LL GPP +GKT L LA+A +L S +
Sbjct: 63 GRAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
I+ G M + G SGKT+LL+ + G+L++S +K SGRV++
Sbjct: 61 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
I+ G M + G SGKT+LL+ + G+L++S +K SGRV++
Sbjct: 61 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
I+ G M + G SGKT+LL+ + G+L++S +K SGRV++
Sbjct: 61 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
I+ G M + G SGKT+LL+ + G+L++S +K SGRV++
Sbjct: 61 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 962 LSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1018
LS + +R+ +A EL ++ +DEPT+GL A ++ + V+ G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 1019 HQPSIDIFEAFDELFLM-----KRGGQEIYVG 1045
H ++D+ + D + + RGGQ + VG
Sbjct: 604 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 962 LSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1018
LS + +R+ +A EL ++ +DEPT+GL A ++ + V+ G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 1019 HQPSIDIFEAFDELFLM-----KRGGQEIYVG 1045
H ++D+ + D + + RGGQ + VG
Sbjct: 906 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 882 TISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIM 941
T GY K+E+ + G ++ + ++V E+L + L L TE +++ ++ + EI
Sbjct: 426 TCQGYRLKKESLAVLVGGKHIGEVTA--MSVTEALAFFDGLEL-TEKEAQIARLILREIR 482
Query: 942 ELVE-LKPLRQSLVGLPGESG-LSTEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAA 997
+ + L+ + + L +G LS + +R+ +A ++ + + + +DEP+ GL R
Sbjct: 483 DRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 542
Query: 998 AIVMRTVKNTVETGRTVVCTIH 1019
++ T+K+ + G T++ H
Sbjct: 543 DRLIATLKSMRDLGNTLIVVEH 564
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 251 LFIDVFMKAAATEGQEANVL---TDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTG 307
+ +V MK A GQ + + + +LGLD +V +RG+SGGQK +L
Sbjct: 857 MVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLA 913
Query: 308 EMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367
+ +DE +N LD + + +L++ G VI + A T +L +++
Sbjct: 914 AGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE----FEG-GVIIITHSAEFTKNLTEEV 968
Query: 368 ILLSDGQIVYQG 379
+ DG++ G
Sbjct: 969 WAVKDGRMTPSG 980
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 30/160 (18%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTR 895
+LLN + + G +G GK+TLM +A N + G+P ++E T
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA----------NGQVDGFPTQEECRTV 498
Query: 896 ISGYCEQN--DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
Y E + HS ++ L E T++ ++++E +
Sbjct: 499 ---YVEHDIDGTHSD----------TSVLDFVFESGVGTKEAIKDKLIEF----GFTDEM 541
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
+ +P S LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 542 IAMPI-SALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 933 RKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
R + +EI E + L +V GLS Q+ +L +A P +I +DEPT+ L
Sbjct: 873 RPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 932
Query: 993 DARAAAIVMRTVK 1005
D + + + +K
Sbjct: 933 DRDSLGALSKALK 945
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 155 LLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH 206
++GP +GK+TL+ L G+L L SG V + + ++ Q A+I H
Sbjct: 704 VIGPNGAGKSTLINVLTGEL---LPTSGEVYTHENCRIAYIKQHAFAHIESH 752
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 962 LSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1018
LS + +R+ +A EL ++ +DEPT+GL A ++ + V+ G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 1019 HQPSIDIFEAFDELFLM-----KRGGQEIYVG 1045
H ++D+ + D + + RGGQ + VG
Sbjct: 906 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 882 TISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIM 941
T GY K+E+ + G ++ + VT E+L + L L TE +++ ++ + EI
Sbjct: 426 TCQGYRLKKESLAVLVGGKHIGEVTAXSVT--EALAFFDGLEL-TEKEAQIARLILREIR 482
Query: 942 ELVE-LKPLRQSLVGLPGESG-LSTEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAA 997
+ + L+ + + L +G LS + +R+ +A ++ + + + +DEP+ GL R
Sbjct: 483 DRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 542
Query: 998 AIVMRTVKNTVETGRTVVCTIH 1019
++ T+K+ + G T++ H
Sbjct: 543 DRLIATLKSXRDLGNTLIVVEH 564
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 29/191 (15%)
Query: 830 VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYISGNITISG-- 885
V E + +G+S +TA++G S +GK+T+++ + G +SG + G
Sbjct: 16 VREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKD 75
Query: 886 -YPKKQETFTRIS----GYCEQNDIHS--PLVTVYESLLYSAWLRLRTEVDSE----TRK 934
++E +I Q S P + V E + V++ +
Sbjct: 76 LLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIE--------HFKDTVEAHGVRWSHS 127
Query: 935 MFIE---EIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 991
IE E + +V L P L P + LS ++R+ IA+ L+ +P ++ +DEPTS
Sbjct: 128 ELIEKASEKLRMVRLNP-EAVLNSYPLQ--LSGGMKQRVLIALALLLDPVVLILDEPTSA 184
Query: 992 LDARAAAIVMR 1002
LD A +++
Sbjct: 185 LDVLTQAHIIQ 195
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 59/202 (29%)
Query: 152 MTLLLGPPSSGKTTLLLALAGQLDSSLKV-SGRVTYNGHD---MNE------------FV 195
+T ++G +SGK+T++ A+ L + ++ SGRV Y G D M E V
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALV 95
Query: 196 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG-SRYDMLTELARREKEAGIKPDLFID 254
PQ ++ M V E + GV S +++ + + + + + P+
Sbjct: 96 PQAAQQSLNP------TMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPE---- 145
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
VL Y L+ +SGG K+R+ ++
Sbjct: 146 -------------AVLNSYPLQ-------------------LSGGMKQRVLIALALLLDP 173
Query: 315 LALFMDEISNGLDSSTTFHIVN 336
+ L +DE ++ LD T HI+
Sbjct: 174 VVLILDEPTSALDVLTQAHIIQ 195
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 24/209 (11%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
+L ++ G L A+ G +GAGKT+L+ ++ G G I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 897 SGYCEQNDIHSPLVTVYESLLYSAW--LRLRTEVDSETRKMFIEEIMELVELKPLRQSLV 954
S +C QN P T+ E+++ ++ R R+ + + E+I + E + ++V
Sbjct: 102 S-FCSQNSWIMP-GTIKENIIGVSYDEYRYRSVIKA---CQLEEDISKFAE----KDNIV 152
Query: 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV 1014
G LS QR R+++A + + + +D P LD + + + +T
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 1015 VCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043
+ + ++ + D++ ++ G Y
Sbjct: 213 ILVTSK--MEHLKKADKILILHEGSSYFY 239
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
D++ I+ G++ + G +GKT+LL+ + G+L+ S +K SGR+++
Sbjct: 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 103
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 24/209 (11%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
+L ++ G L A+ G +GAGKT+L+ ++ G G I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 897 SGYCEQNDIHSPLVTVYESLLYSAW--LRLRTEVDSETRKMFIEEIMELVELKPLRQSLV 954
S +C QN P T+ E+++ ++ R R+ + + E+I + E + ++V
Sbjct: 102 S-FCSQNSWIMP-GTIKENIIGVSYDEYRYRSVIKA---CQLEEDISKFAE----KDNIV 152
Query: 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV 1014
G LS QR R+++A + + + +D P LD + + + +T
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 1015 VCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043
+ + ++ + D++ ++ G Y
Sbjct: 213 ILVTSK--MEHLKKADKILILHEGSSYFY 239
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
D++ I+ G++ + G +GKT+LL+ + G+L+ S +K SGR+++
Sbjct: 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 103
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 33.5 bits (75), Expect = 0.74, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 824 EMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI 883
E++ V DK VL ++ G + G +G GKTTL+ ++ + G I
Sbjct: 12 EIRDLSVGYDKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIY 68
Query: 884 SGYPKKQETFTRISG--YCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIM 941
+G P T++ G + +I P E L + +V+ K I + +
Sbjct: 69 NGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN----KNEIMDAL 119
Query: 942 ELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
E VE+ L++ L GE LS +R+ +A L+ N I +D+P +D + V+
Sbjct: 120 ESVEVLDLKKKL----GE--LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 173
Query: 1002 RTV 1004
+++
Sbjct: 174 KSI 176
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.5 bits (75), Expect = 0.79, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 985 MDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDEL 1032
MD+ G+++ A IV+ + E+G+ + IH+ +I+I +A DEL
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDEL 150
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 272 DYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTT 331
+ + LGLD +V +RG+SGGQK +L + +DE +N LD +
Sbjct: 881 EEHCSXLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL 937
Query: 332 FHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
+ +L++ G VI + A T +L +++ + DG+ G
Sbjct: 938 GALSKALKE----FEG-GVIIITHSAEFTKNLTEEVWAVKDGRXTPSG 980
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 933 RKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
R + +EI E L +V GLS Q+ +L +A P +I +DEPT+ L
Sbjct: 873 RPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 932
Query: 993 DARAAAIVMRTVK 1005
D + + + +K
Sbjct: 933 DRDSLGALSKALK 945
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 155 LLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH 206
++GP +GK+TL+ L G+L L SG V + + ++ Q A+I H
Sbjct: 704 VIGPNGAGKSTLINVLTGEL---LPTSGEVYTHENCRIAYIKQHAFAHIESH 752
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 272 DYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTT 331
+ + LGLD +V +RG+SGGQK +L + +DE +N LD +
Sbjct: 875 EEHCSXLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL 931
Query: 332 FHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
+ +L++ G VI + A T +L +++ + DG+ G
Sbjct: 932 GALSKALKE----FEG-GVIIITHSAEFTKNLTEEVWAVKDGRXTPSG 974
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 933 RKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
R + +EI E L +V GLS Q+ +L +A P +I +DEPT+ L
Sbjct: 867 RPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 926
Query: 993 DARAAAIVMRTVK 1005
D + + + +K
Sbjct: 927 DRDSLGALSKALK 939
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 155 LLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH 206
++GP +GK+TL+ L G+L L SG V + + ++ Q A+I H
Sbjct: 698 VIGPNGAGKSTLINVLTGEL---LPTSGEVYTHENCRIAYIKQHAFAHIESH 746
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
D++ I+ G++ + G +GKT+LL+ + G+L+ S +K SGR+++
Sbjct: 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 103
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 154 LLLGPPSSGKTTLLLALAGQLDSSL-KVSGRVTYNGHDMNEFVPQR 198
L+GP ++GKT L +ALA L L V + Y G D+ P R
Sbjct: 9 FLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSR 54
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
D++ I+ G++ + G +GKT+LL+ + G+L+ S +K SGR+++
Sbjct: 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 103
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
D++ I+ G++ + G +GKT+LL+ + G+L+ S +K SGR+++
Sbjct: 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 103
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
D++ I+ G++ + G +GKT+LL+ + G+L+ S +K SGR+++
Sbjct: 38 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 85
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 25/210 (11%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
+L ++ G L A+ G +GAGKT+L+ ++ G G I SG RI
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 83
Query: 897 SGYCEQNDIHSPLVTVYESLLYSA---WLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
S +C Q P T+ E++++ R R+ + + E+I + E + ++
Sbjct: 84 S-FCSQFSWIMP-GTIKENIIFGVSYDEYRYRSVIKA---CQLEEDISKFAE----KDNI 134
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
V G LS QR R+++A + + + +D P LD + + + +T
Sbjct: 135 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 194
Query: 1014 VVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043
+ + ++ + D++ ++ G Y
Sbjct: 195 RILVTSK--MEHLKKADKILILHEGSSYFY 222
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 149 PGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDV 208
P + L+ GP SGK+T L A+ L+++ K +T D EFV + ++Q +V
Sbjct: 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIE--DPIEFVHESKKCLVNQREV 178
Query: 209 HIGEMTVRETLAFS 222
H R+TL FS
Sbjct: 179 H------RDTLGFS 186
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1023
QR RL + I +DEPT GL R +++T+K + G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVKNTVET 1010
+G P + LS + +R+ +A EL + + +DEPT GL ++ + V+
Sbjct: 799 LGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 1011 GRTVVCTIHQPSIDIFEAFDELF-LMKRGGQE 1041
G TV+ H ++D+ + D + L GG+E
Sbjct: 858 GNTVIVIEH--NLDVIKNADHIIDLGPEGGKE 887
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
D++ I+ G++ + G +GKT+LL+ + G+L+ S +K SGR+++
Sbjct: 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 73
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 25/210 (11%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
+L ++ G L A+ G +GAGKT+L+ ++ G G I SG RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 897 SGYCEQNDIHSPLVTVYESLLYSA---WLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
S +C Q P T+ E++++ R R+ + + E+I + E + ++
Sbjct: 72 S-FCSQFSWIMP-GTIKENIIFGVSYDEYRYRSVIKA---CQLEEDISKFAE----KDNI 122
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
V G LS QR R+++A + + + +D P LD + + + +T
Sbjct: 123 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 182
Query: 1014 VVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043
+ + ++ + D++ ++ G Y
Sbjct: 183 RILVTSK--MEHLKKADKILILHEGSSYFY 210
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173
G I GR+T + GP S GKTTL LA+ Q
Sbjct: 69 GGIPRGRITEIYGPESGGKTTLALAIVAQ 97
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
D++ I+ G++ + G +GKT+LL+ + G+L+ S +K SGR+++
Sbjct: 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 73
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 962 LSTEQRKRLTIAVELVAN--PSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
LS + +RL +A +L +N + +DEP++GL ++ ++N G ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 1020 QPSIDIFEAFDELFLM-----KRGGQEIYVGP 1046
+D+ D L + ++GG+ +Y GP
Sbjct: 440 --DLDVIRRADWLVDVGPEAGEKGGEILYSGP 469
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 962 LSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1018
LS + +R+ +A EL + ++ +DEPT+GL + R + V+ G TV+
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 1019 HQ 1020
H+
Sbjct: 791 HK 792
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 812 FDDVTYSADMPKE----MKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 865
F D P+E ++L GV + L + + F GV+T++ GVSG+GK+TL+
Sbjct: 486 FADRHTEPHTPREPAGWLELNGVTRNNL---DNLDVRFPLGVMTSVTGVSGSGKSTLV 540
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 874
L +S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSS-LKVSG 182
I P R LL GPP +GKT L+ A+A ++ ++V+G
Sbjct: 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 144 SGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS 177
+G+ P R LL GPP +GKT L A+A + +++
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT 175
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVS 181
+P LL GPP GKTTL +A +L +L+V+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQ 173
+KP R LL GPP +GKT + A+A +
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANE 261
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVS 181
+P LL GPP GKTTL +A +L +L+V+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVS 181
+P LL GPP GKTTL +A +L +L+V+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQ 173
+KP R LL GPP +GKT + A+A +
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANE 261
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQ 173
+KP R LL GPP +GKT + A+A +
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANE 261
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQ 173
+KP R LL GPP +GKT + A+A +
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANE 261
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQ 173
+KP R LL GPP +GKT + A+A +
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANE 261
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQ 173
+KP R LL GPP +GKT + A+A +
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANE 261
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 841 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 874
+S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 42 LSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQL 174
IKP + LL GPP +GKT L A+A +
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 154 LLLGPPSSGKTTLLLALAGQLDSSLKV-SGRVTYNGHDM 191
LL GPP GKTTL +A +L +++ V SG V DM
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 154 LLLGPPSSGKTTLLLALAGQLDSSLKV-SGRVTYNGHDM 191
LL GPP GKTTL +A +L +++ V SG V DM
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 154 LLLGPPSSGKTTLLLALAGQLDSSLKV-SGRVTYNGHDM 191
LL GPP GKTTL +A +L +++ V SG V DM
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 154 LLLGPPSSGKTTLLLALAGQLDSSLKV-SGRVTYNGHDM 191
LL GPP GKTTL +A +L +++ V SG V DM
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 154 LLLGPPSSGKTTLLLALAGQLDSSLKV-SGRVTYNGHDM 191
LL GPP GKTTL +A +L +++ V SG V DM
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93
>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|B Chain B, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|C Chain C, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|D Chain D, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|E Chain E, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|F Chain F, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
Length = 176
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEI 322
GDE+ + G+ K LTTGE++ G L FM EI
Sbjct: 117 GDELEVNLETGEIKNLTTGEVLKGQKLPEFMMEI 150
>pdb|2XQH|A Chain A, Crystal Structure Of An Immunoglobulin-Binding Fragment Of
The Trimeric Autotransporter Adhesin Eibd
Length = 281
Score = 30.0 bits (66), Expect = 9.7, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 922 LRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS 981
++ R V+SE +K + ++ V K ++ VG+ + L+ + TIAV N
Sbjct: 183 VKARITVESEKQKKYTDQKTSEVNEKVEARTTVGVDSDGKLTRAEGATKTIAV----NDG 238
Query: 982 IIFMDEPTSGLDARAAAIVMRTVKNT 1007
++ + T +D AI R +NT
Sbjct: 239 LVALSGRTDRIDYAVGAIDGRVTRNT 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,501,207
Number of Sequences: 62578
Number of extensions: 1414482
Number of successful extensions: 3578
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 3166
Number of HSP's gapped (non-prelim): 372
length of query: 1326
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1216
effective length of database: 8,089,757
effective search space: 9837144512
effective search space used: 9837144512
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)