Query 046656
Match_columns 1326
No_of_seqs 763 out of 5566
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:52:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2.8E-73 9.5E-78 769.1 47.7 214 809-1047 1076-1299(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 2.4E-66 8.1E-71 699.9 55.9 214 809-1047 1030-1253(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 2.6E-57 9E-62 565.0 34.7 202 809-1049 357-560 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 2.9E-57 1E-61 559.7 32.4 201 809-1048 287-489 (538)
5 3ozx_A RNAse L inhibitor; ATP 100.0 8.5E-56 2.9E-60 544.7 30.6 214 809-1059 269-484 (538)
6 2iw3_A Elongation factor 3A; a 100.0 2.3E-55 7.9E-60 562.1 35.1 187 134-385 445-634 (986)
7 3ux8_A Excinuclease ABC, A sub 100.0 4.8E-54 1.7E-58 548.5 38.4 214 136-384 30-296 (670)
8 3j16_B RLI1P; ribosome recycli 100.0 4E-54 1.4E-58 534.9 29.7 190 836-1050 361-557 (608)
9 3tui_C Methionine import ATP-b 100.0 7.4E-42 2.5E-46 396.5 26.6 218 809-1047 24-248 (366)
10 3tif_A Uncharacterized ABC tra 100.0 1.3E-41 4.4E-46 377.0 26.3 220 810-1048 2-230 (235)
11 3pih_A Uvrabc system protein A 100.0 8.7E-41 3E-45 428.4 34.6 195 837-1047 599-897 (916)
12 3rlf_A Maltose/maltodextrin im 100.0 2.8E-41 9.5E-46 394.4 27.4 214 809-1047 3-218 (381)
13 3gfo_A Cobalt import ATP-bindi 100.0 1.9E-41 6.5E-46 382.7 24.4 215 809-1047 7-228 (275)
14 3fvq_A Fe(3+) IONS import ATP- 100.0 1.9E-41 6.5E-46 393.3 24.9 214 809-1047 4-223 (359)
15 2pcj_A ABC transporter, lipopr 100.0 4E-41 1.4E-45 370.5 26.0 212 810-1047 5-223 (224)
16 2olj_A Amino acid ABC transpor 100.0 5.2E-41 1.8E-45 377.0 26.6 214 809-1047 24-243 (263)
17 1b0u_A Histidine permease; ABC 100.0 6.8E-41 2.3E-45 377.0 25.8 214 809-1047 6-237 (262)
18 3fvq_A Fe(3+) IONS import ATP- 100.0 3.2E-41 1.1E-45 391.4 23.5 213 130-385 10-227 (359)
19 3tui_C Methionine import ATP-b 100.0 1.1E-40 3.8E-45 386.7 27.0 207 136-385 40-252 (366)
20 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-40 3.8E-45 373.2 25.8 214 809-1047 15-230 (256)
21 3rlf_A Maltose/maltodextrin im 100.0 1.2E-40 4.1E-45 389.0 25.6 212 131-385 10-222 (381)
22 1g6h_A High-affinity branched- 100.0 8.5E-41 2.9E-45 375.7 22.8 217 809-1047 7-237 (257)
23 1z47_A CYSA, putative ABC-tran 100.0 2.1E-40 7.2E-45 385.0 25.9 215 809-1047 14-230 (355)
24 2r6f_A Excinuclease ABC subuni 100.0 1.2E-39 4.1E-44 413.2 35.0 195 837-1047 639-937 (972)
25 2it1_A 362AA long hypothetical 100.0 2.7E-40 9.2E-45 385.6 26.4 213 810-1047 4-218 (362)
26 2yyz_A Sugar ABC transporter, 100.0 2.2E-40 7.4E-45 386.0 25.2 213 810-1047 4-218 (359)
27 1g29_1 MALK, maltose transport 100.0 4.2E-40 1.4E-44 386.3 27.3 213 810-1047 4-224 (372)
28 1ji0_A ABC transporter; ATP bi 100.0 2.8E-40 9.6E-45 367.7 24.1 213 809-1047 6-223 (240)
29 4g1u_C Hemin import ATP-bindin 100.0 2.1E-40 7.2E-45 373.3 23.1 213 809-1048 11-233 (266)
30 1oxx_K GLCV, glucose, ABC tran 100.0 2.7E-40 9.2E-45 385.7 22.5 213 810-1047 4-225 (353)
31 1v43_A Sugar-binding transport 100.0 4E-40 1.4E-44 385.5 23.7 213 810-1047 12-226 (372)
32 2yyz_A Sugar ABC transporter, 100.0 8.6E-40 3E-44 380.9 26.0 211 132-385 11-222 (359)
33 1z47_A CYSA, putative ABC-tran 100.0 8.9E-40 3E-44 379.8 25.9 208 135-385 26-234 (355)
34 2it1_A 362AA long hypothetical 100.0 1E-39 3.5E-44 380.7 25.7 212 131-385 10-222 (362)
35 2olj_A Amino acid ABC transpor 100.0 2.6E-39 8.8E-44 363.2 25.5 207 135-385 35-247 (263)
36 2vf7_A UVRA2, excinuclease ABC 100.0 4.5E-39 1.5E-43 409.4 31.0 195 837-1047 512-822 (842)
37 3gfo_A Cobalt import ATP-bindi 100.0 1.3E-39 4.6E-44 367.6 23.2 207 137-386 21-233 (275)
38 4g1u_C Hemin import ATP-bindin 100.0 1.8E-39 6.1E-44 365.8 24.1 206 135-385 22-236 (266)
39 3d31_A Sulfate/molybdate ABC t 100.0 1E-39 3.5E-44 379.2 22.6 209 810-1047 2-212 (348)
40 1g29_1 MALK, maltose transport 100.0 2.2E-39 7.5E-44 380.2 25.5 211 132-385 11-228 (372)
41 1v43_A Sugar-binding transport 100.0 1.7E-39 5.9E-44 380.1 24.4 209 134-385 21-230 (372)
42 3d31_A Sulfate/molybdate ABC t 100.0 1.6E-39 5.3E-44 377.7 23.6 209 130-385 7-216 (348)
43 2pcj_A ABC transporter, lipopr 100.0 2.2E-39 7.6E-44 356.6 23.4 203 134-381 14-223 (224)
44 2d2e_A SUFC protein; ABC-ATPas 100.0 2.1E-39 7.1E-44 362.9 22.8 216 810-1047 4-228 (250)
45 1b0u_A Histidine permease; ABC 100.0 2.3E-39 7.8E-44 364.7 22.6 207 135-385 17-241 (262)
46 2onk_A Molybdate/tungstate ABC 100.0 2.1E-39 7.2E-44 359.6 22.0 208 810-1047 2-211 (240)
47 2yz2_A Putative ABC transporte 100.0 1.8E-39 6.2E-44 366.5 21.6 217 810-1047 3-222 (266)
48 1oxx_K GLCV, glucose, ABC tran 100.0 2E-39 6.7E-44 378.4 22.4 210 133-385 12-229 (353)
49 2ihy_A ABC transporter, ATP-bi 100.0 1.4E-39 4.8E-44 368.9 19.6 217 809-1047 21-247 (279)
50 1vpl_A ABC transporter, ATP-bi 100.0 5.3E-39 1.8E-43 359.6 23.9 207 136-386 27-235 (256)
51 3tif_A Uncharacterized ABC tra 100.0 5.9E-39 2E-43 355.6 23.7 207 137-384 18-232 (235)
52 2ygr_A Uvrabc system protein A 100.0 4.9E-38 1.7E-42 400.1 35.5 195 837-1047 657-955 (993)
53 1g6h_A High-affinity branched- 100.0 4.1E-39 1.4E-43 362.0 21.8 216 135-383 18-239 (257)
54 2zu0_C Probable ATP-dependent 100.0 1.3E-38 4.3E-43 359.6 24.9 220 809-1047 20-249 (267)
55 1ji0_A ABC transporter; ATP bi 100.0 7.7E-39 2.6E-43 356.1 22.6 206 135-385 17-227 (240)
56 2nq2_C Hypothetical ABC transp 100.0 3E-38 1E-42 353.5 25.7 206 810-1047 5-212 (253)
57 3nh6_A ATP-binding cassette SU 100.0 6.3E-39 2.1E-43 366.5 20.2 210 809-1047 53-272 (306)
58 2onk_A Molybdate/tungstate ABC 100.0 2.8E-38 9.6E-43 350.5 23.1 201 139-385 14-215 (240)
59 2qi9_C Vitamin B12 import ATP- 100.0 2E-38 6.8E-43 353.5 21.3 193 837-1047 15-217 (249)
60 1sgw_A Putative ABC transporte 100.0 1.2E-38 4E-43 346.9 18.0 198 809-1036 10-207 (214)
61 2ff7_A Alpha-hemolysin translo 100.0 2.1E-38 7.3E-43 353.6 20.3 212 808-1047 6-227 (247)
62 2ixe_A Antigen peptide transpo 100.0 1.3E-38 4.3E-43 360.1 17.6 214 809-1047 16-240 (271)
63 3nh6_A ATP-binding cassette SU 100.0 3.9E-38 1.3E-42 359.9 21.1 208 137-386 67-277 (306)
64 2yz2_A Putative ABC transporte 100.0 9.6E-38 3.3E-42 352.5 21.1 205 137-386 20-227 (266)
65 1mv5_A LMRA, multidrug resista 100.0 4.8E-38 1.7E-42 350.5 16.2 210 810-1047 2-221 (243)
66 2ihy_A ABC transporter, ATP-bi 100.0 1.4E-37 4.7E-42 352.6 19.5 209 136-384 33-250 (279)
67 2ff7_A Alpha-hemolysin translo 100.0 3.4E-37 1.2E-41 343.9 20.9 201 136-385 21-231 (247)
68 2d2e_A SUFC protein; ABC-ATPas 100.0 3.1E-37 1E-41 345.3 18.9 208 134-383 13-230 (250)
69 2pjz_A Hypothetical protein ST 100.0 6.2E-37 2.1E-41 343.9 20.4 206 810-1047 2-210 (263)
70 2ghi_A Transport protein; mult 100.0 5.3E-37 1.8E-41 345.0 18.9 211 809-1047 17-237 (260)
71 2nq2_C Hypothetical ABC transp 100.0 2.1E-36 7.2E-41 338.5 23.6 198 136-384 17-215 (253)
72 2ixe_A Antigen peptide transpo 100.0 1E-36 3.5E-41 344.5 20.7 209 137-386 32-245 (271)
73 2zu0_C Probable ATP-dependent 100.0 2E-36 6.7E-41 341.7 22.1 221 136-394 32-261 (267)
74 1mv5_A LMRA, multidrug resista 100.0 5.8E-37 2E-41 341.8 16.3 202 136-385 14-225 (243)
75 2qi9_C Vitamin B12 import ATP- 100.0 3.5E-36 1.2E-40 335.3 21.2 197 138-384 14-220 (249)
76 2pjz_A Hypothetical protein ST 100.0 3.6E-36 1.2E-40 337.7 20.3 194 137-385 18-214 (263)
77 3gd7_A Fusion complex of cysti 100.0 1.1E-36 3.6E-41 358.7 15.4 210 809-1047 19-237 (390)
78 2pze_A Cystic fibrosis transme 100.0 4.5E-36 1.6E-40 331.3 19.4 200 809-1047 6-213 (229)
79 2ghi_A Transport protein; mult 100.0 7.4E-36 2.5E-40 335.6 20.3 200 137-386 33-242 (260)
80 3gd7_A Fusion complex of cysti 100.0 9.2E-37 3.1E-41 359.3 12.3 201 136-386 33-242 (390)
81 2cbz_A Multidrug resistance-as 100.0 9.6E-36 3.3E-40 330.3 19.5 199 810-1047 4-212 (237)
82 2yl4_A ATP-binding cassette SU 100.0 2.8E-35 9.5E-40 370.3 24.7 216 810-1049 342-567 (595)
83 3qf4_A ABC transporter, ATP-bi 100.0 1.6E-35 5.6E-40 370.9 22.1 212 808-1047 340-561 (587)
84 1sgw_A Putative ABC transporte 100.0 4.5E-36 1.5E-40 326.5 14.6 192 133-375 19-210 (214)
85 4a82_A Cystic fibrosis transme 100.0 1.7E-35 5.8E-40 370.7 21.9 212 808-1047 338-559 (578)
86 2pze_A Cystic fibrosis transme 100.0 2.7E-35 9.3E-40 325.1 19.6 197 136-385 20-217 (229)
87 3b60_A Lipid A export ATP-bind 100.0 3.1E-35 1.1E-39 368.9 21.9 212 809-1047 341-562 (582)
88 2cbz_A Multidrug resistance-as 100.0 1.5E-35 5.3E-40 328.6 16.3 199 137-386 18-217 (237)
89 3b5x_A Lipid A export ATP-bind 100.0 2.6E-35 8.7E-40 369.7 19.1 212 809-1047 341-562 (582)
90 3qf4_B Uncharacterized ABC tra 100.0 3.6E-35 1.2E-39 368.8 18.1 210 809-1047 354-573 (598)
91 4a82_A Cystic fibrosis transme 100.0 9.6E-35 3.3E-39 363.9 21.4 209 136-386 353-564 (578)
92 3qf4_A ABC transporter, ATP-bi 100.0 1.3E-34 4.4E-39 362.7 20.2 209 136-386 355-566 (587)
93 3b60_A Lipid A export ATP-bind 100.0 2.6E-34 8.8E-39 360.6 21.1 202 137-386 356-567 (582)
94 2yl4_A ATP-binding cassette SU 100.0 3.8E-34 1.3E-38 360.0 22.1 203 137-385 357-569 (595)
95 4f4c_A Multidrug resistance pr 100.0 5.1E-33 1.7E-37 376.4 33.7 212 809-1047 415-636 (1321)
96 3b5x_A Lipid A export ATP-bind 100.0 3E-34 1E-38 360.0 20.0 201 137-385 356-566 (582)
97 3qf4_B Uncharacterized ABC tra 100.0 3.5E-34 1.2E-38 359.9 18.2 209 136-386 367-578 (598)
98 2bbs_A Cystic fibrosis transme 100.0 8.6E-34 2.9E-38 322.6 18.4 195 809-1047 40-242 (290)
99 2bbs_A Cystic fibrosis transme 100.0 3.7E-33 1.3E-37 317.4 17.4 195 137-385 51-246 (290)
100 3g5u_A MCG1178, multidrug resi 100.0 1.2E-32 4E-37 372.0 20.5 212 809-1047 387-608 (1284)
101 3bk7_A ABC transporter ATP-bin 100.0 9.8E-30 3.3E-34 317.0 20.4 191 139-386 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 100.0 1.8E-29 6.1E-34 311.8 18.7 191 139-386 301-493 (538)
103 3ozx_A RNAse L inhibitor; ATP 100.0 3.5E-29 1.2E-33 308.1 19.8 192 139-385 283-476 (538)
104 2iw3_A Elongation factor 3A; a 100.0 8.7E-29 3E-33 317.2 21.3 193 809-1047 435-630 (986)
105 3j16_B RLI1P; ribosome recycli 100.0 9.3E-29 3.2E-33 307.4 20.2 193 137-386 360-559 (608)
106 1tf7_A KAIC; homohexamer, hexa 100.0 3.4E-30 1.2E-34 319.5 4.0 155 842-1038 275-443 (525)
107 3ux8_A Excinuclease ABC, A sub 100.0 5.9E-29 2E-33 317.2 15.0 204 835-1047 31-293 (670)
108 3pih_A Uvrabc system protein A 99.9 4.2E-24 1.4E-28 274.3 23.2 109 270-385 784-901 (916)
109 2r6f_A Excinuclease ABC subuni 99.9 1.6E-24 5.3E-29 275.4 18.6 107 271-385 825-941 (972)
110 2ygr_A Uvrabc system protein A 99.9 4.3E-24 1.5E-28 272.5 18.1 108 271-386 843-960 (993)
111 2vf7_A UVRA2, excinuclease ABC 99.9 5.7E-24 2E-28 270.9 17.8 108 270-385 709-826 (842)
112 4aby_A DNA repair protein RECN 99.9 2.3E-24 8E-29 260.2 12.5 204 836-1045 49-381 (415)
113 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.2E-26 7.4E-31 277.7 -6.7 183 839-1047 129-333 (460)
114 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.3E-26 2.2E-30 273.7 -4.5 184 141-385 129-337 (460)
115 4aby_A DNA repair protein RECN 99.9 6.6E-23 2.3E-27 247.4 15.7 237 136-379 47-381 (415)
116 3b85_A Phosphate starvation-in 99.9 3.3E-25 1.1E-29 240.2 -11.4 145 834-1022 12-159 (208)
117 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 8.9E-22 3E-26 232.2 14.0 81 960-1043 278-364 (365)
118 1e69_A Chromosome segregation 99.9 1.6E-21 5.6E-26 226.7 13.5 86 960-1048 218-309 (322)
119 4gp7_A Metallophosphoesterase; 99.9 1.2E-22 4.2E-27 214.0 3.4 143 840-1022 1-160 (171)
120 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 3.3E-20 1.1E-24 218.8 17.7 84 291-377 275-364 (365)
121 3b85_A Phosphate starvation-in 99.8 5E-23 1.7E-27 223.1 -6.5 153 132-360 8-161 (208)
122 1tq4_A IIGP1, interferon-induc 99.8 1.9E-23 6.6E-28 247.4 -11.6 171 835-1033 36-248 (413)
123 1znw_A Guanylate kinase, GMP k 99.8 1.9E-23 6.4E-28 227.4 -14.9 184 835-1040 9-206 (207)
124 2v9p_A Replication protein E1; 99.8 9.7E-23 3.3E-27 231.9 -11.9 158 137-391 113-271 (305)
125 1tq4_A IIGP1, interferon-induc 99.8 5.4E-22 1.8E-26 235.1 -6.2 172 137-368 36-248 (413)
126 1ye8_A Protein THEP1, hypothet 99.8 1.2E-20 4E-25 199.7 3.9 148 850-1046 2-162 (178)
127 1e69_A Chromosome segregation 99.8 9.9E-20 3.4E-24 211.6 11.4 89 291-383 215-310 (322)
128 4gp7_A Metallophosphoesterase; 99.8 4E-20 1.4E-24 194.7 4.4 66 295-362 83-164 (171)
129 1ye8_A Protein THEP1, hypothet 99.8 2.4E-20 8.2E-25 197.3 2.6 149 152-377 2-159 (178)
130 2v9p_A Replication protein E1; 99.8 1.7E-22 5.8E-27 229.9 -19.6 167 810-1059 102-269 (305)
131 3b9q_A Chloroplast SRP recepto 99.8 3.9E-20 1.3E-24 211.9 -2.0 154 838-1020 90-256 (302)
132 3sop_A Neuronal-specific septi 99.7 1.7E-20 5.7E-25 211.7 -6.0 147 850-1021 4-150 (270)
133 2pt7_A CAG-ALFA; ATPase, prote 99.7 2.7E-19 9.2E-24 207.8 2.6 130 837-1038 160-290 (330)
134 2o5v_A DNA replication and rep 99.7 1.1E-17 3.7E-22 195.4 14.7 86 290-384 259-354 (359)
135 3b9q_A Chloroplast SRP recepto 99.7 2.2E-19 7.5E-24 205.6 0.1 174 140-375 90-284 (302)
136 1z6g_A Guanylate kinase; struc 99.7 1.5E-21 5E-26 214.0 -17.9 178 836-1034 11-206 (218)
137 3sop_A Neuronal-specific septi 99.7 2.4E-19 8.2E-24 202.3 -0.6 147 152-357 4-150 (270)
138 2og2_A Putative signal recogni 99.7 3.9E-19 1.3E-23 207.1 0.2 153 839-1020 148-313 (359)
139 3qkt_A DNA double-strand break 99.7 4.5E-17 1.5E-21 190.6 17.2 76 960-1037 247-328 (339)
140 1z6g_A Guanylate kinase; struc 99.7 6.3E-21 2.1E-25 209.0 -15.8 173 138-372 11-193 (218)
141 2dpy_A FLII, flagellum-specifi 99.7 2.9E-19 9.8E-24 214.6 -3.6 174 835-1047 145-339 (438)
142 2dpy_A FLII, flagellum-specifi 99.7 2.4E-19 8.1E-24 215.3 -4.4 180 136-384 144-342 (438)
143 1znw_A Guanylate kinase, GMP k 99.7 3.7E-20 1.3E-24 201.3 -11.0 184 137-371 9-202 (207)
144 2og2_A Putative signal recogni 99.7 1.9E-18 6.5E-23 201.3 1.3 173 141-375 148-341 (359)
145 2o5v_A DNA replication and rep 99.7 4.3E-17 1.5E-21 190.3 12.6 79 961-1048 265-352 (359)
146 1cr0_A DNA primase/helicase; R 99.7 4.4E-18 1.5E-22 195.6 3.1 182 836-1038 23-235 (296)
147 3aez_A Pantothenate kinase; tr 99.7 5.9E-20 2E-24 211.3 -14.4 159 845-1038 87-245 (312)
148 4ad8_A DNA repair protein RECN 99.7 4.3E-17 1.5E-21 201.6 9.7 76 960-1038 395-473 (517)
149 3aez_A Pantothenate kinase; tr 99.7 2.1E-18 7.1E-23 198.5 -4.1 128 142-328 81-209 (312)
150 3qkt_A DNA double-strand break 99.7 1.5E-15 5.1E-20 177.7 19.2 81 291-374 244-332 (339)
151 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.4E-17 4.8E-22 193.4 1.7 133 139-375 160-292 (330)
152 4ad8_A DNA repair protein RECN 99.6 4.8E-16 1.7E-20 192.2 14.4 78 292-373 393-473 (517)
153 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 6.6E-16 2.2E-20 157.5 10.4 75 960-1036 56-136 (148)
154 1cr0_A DNA primase/helicase; R 99.6 1E-16 3.6E-21 184.1 4.5 185 137-375 22-237 (296)
155 2eyu_A Twitching motility prot 99.6 1.6E-16 5.5E-21 178.2 5.7 131 837-1037 16-147 (261)
156 2o8b_B DNA mismatch repair pro 99.6 8.6E-17 2.9E-21 210.6 2.9 156 835-1046 769-936 (1022)
157 2ehv_A Hypothetical protein PH 99.6 4E-17 1.4E-21 182.3 -0.5 164 843-1037 25-207 (251)
158 2jeo_A Uridine-cytidine kinase 99.6 2.6E-17 8.7E-22 183.8 -2.7 155 833-1020 10-164 (245)
159 3thx_A DNA mismatch repair pro 99.6 1.3E-15 4.4E-20 196.9 12.6 149 834-1047 648-808 (934)
160 2obl_A ESCN; ATPase, hydrolase 99.6 5.5E-17 1.9E-21 189.1 -0.6 173 835-1047 59-250 (347)
161 2jeo_A Uridine-cytidine kinase 99.6 1.7E-16 5.9E-21 177.0 1.6 177 135-386 10-187 (245)
162 4a74_A DNA repair and recombin 99.6 3.9E-16 1.3E-20 171.9 2.3 152 843-1038 20-200 (231)
163 3thx_A DNA mismatch repair pro 99.6 2.8E-15 9.7E-20 193.8 9.1 89 294-384 720-811 (934)
164 2obl_A ESCN; ATPase, hydrolase 99.6 1.3E-16 4.5E-21 185.9 -3.2 181 136-384 58-253 (347)
165 3thx_B DNA mismatch repair pro 99.6 2.2E-16 7.4E-21 203.5 -1.6 145 834-1032 659-805 (918)
166 1tf7_A KAIC; homohexamer, hexa 99.5 4.8E-15 1.6E-19 183.6 10.0 155 144-374 275-444 (525)
167 1ewq_A DNA mismatch repair pro 99.5 1.5E-15 5.2E-20 193.1 2.3 133 835-1029 566-704 (765)
168 2qnr_A Septin-2, protein NEDD5 99.5 1.4E-16 4.8E-21 182.9 -7.9 157 833-1022 9-168 (301)
169 4a74_A DNA repair and recombin 99.5 2.6E-15 8.8E-20 165.4 2.5 154 145-374 20-201 (231)
170 1rj9_A FTSY, signal recognitio 99.5 1.5E-15 5.1E-20 173.9 -0.5 146 847-1021 101-258 (304)
171 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 3.8E-14 1.3E-18 144.4 9.4 83 290-375 52-142 (148)
172 3asz_A Uridine kinase; cytidin 99.5 6E-17 2.1E-21 176.3 -12.3 145 845-1021 3-161 (211)
173 2qnr_A Septin-2, protein NEDD5 99.5 1.1E-15 3.8E-20 175.4 -2.6 162 130-357 4-167 (301)
174 1pzn_A RAD51, DNA repair and r 99.5 1.4E-15 4.9E-20 178.0 -1.8 164 837-1045 119-308 (349)
175 2o8b_B DNA mismatch repair pro 99.5 3.1E-15 1.1E-19 195.9 0.7 159 137-382 769-938 (1022)
176 1wb9_A DNA mismatch repair pro 99.5 1E-14 3.5E-19 186.6 5.3 156 835-1046 595-752 (800)
177 2ehv_A Hypothetical protein PH 99.5 3.8E-15 1.3E-19 166.2 1.0 169 139-371 18-206 (251)
178 2eyu_A Twitching motility prot 99.5 6.4E-15 2.2E-19 165.2 2.5 133 138-372 15-147 (261)
179 1nlf_A Regulatory protein REPA 99.5 7.2E-14 2.5E-18 158.9 10.7 151 844-1022 26-182 (279)
180 2i3b_A HCR-ntpase, human cance 99.5 2.5E-16 8.5E-21 167.8 -9.1 159 150-379 1-169 (189)
181 3asz_A Uridine kinase; cytidin 99.5 1.4E-15 4.8E-20 165.5 -3.4 141 147-351 3-156 (211)
182 3jvv_A Twitching mobility prot 99.5 1.3E-14 4.5E-19 169.4 4.3 133 837-1038 114-246 (356)
183 1pzn_A RAD51, DNA repair and r 99.5 3.8E-15 1.3E-19 174.4 -1.1 168 138-380 118-309 (349)
184 1ewq_A DNA mismatch repair pro 99.4 1.2E-14 4.1E-19 184.9 2.3 132 137-364 566-704 (765)
185 2w0m_A SSO2452; RECA, SSPF, un 99.4 1.3E-14 4.5E-19 159.8 2.1 167 836-1038 10-192 (235)
186 1w1w_A Structural maintenance 99.4 3.1E-13 1.1E-17 163.3 14.1 76 293-371 331-410 (430)
187 3thx_B DNA mismatch repair pro 99.4 6.4E-14 2.2E-18 180.6 8.1 155 137-377 660-816 (918)
188 2i3b_A HCR-ntpase, human cance 99.4 5.5E-16 1.9E-20 165.2 -9.3 158 848-1046 1-170 (189)
189 1rj9_A FTSY, signal recognitio 99.4 1.6E-14 5.4E-19 165.4 0.1 148 149-356 101-257 (304)
190 3szr_A Interferon-induced GTP- 99.4 5E-15 1.7E-19 185.7 -4.7 165 153-386 48-237 (608)
191 3szr_A Interferon-induced GTP- 99.4 3.8E-14 1.3E-18 177.7 2.0 136 851-1022 48-197 (608)
192 2w0m_A SSO2452; RECA, SSPF, un 99.4 5.6E-13 1.9E-17 146.7 10.0 78 295-373 103-192 (235)
193 1pui_A ENGB, probable GTP-bind 99.4 1.5E-13 5.1E-18 148.9 4.8 180 810-1013 4-202 (210)
194 2qag_C Septin-7; cell cycle, c 99.4 1.8E-14 6.1E-19 171.4 -2.9 164 809-1022 11-178 (418)
195 3kta_B Chromosome segregation 99.3 1.7E-12 5.8E-17 135.8 9.9 84 960-1046 63-152 (173)
196 1wb9_A DNA mismatch repair pro 99.3 2.5E-13 8.4E-18 173.9 3.7 156 137-379 595-751 (800)
197 1nlf_A Regulatory protein REPA 99.3 1.8E-12 6.1E-17 147.4 9.3 153 146-359 26-183 (279)
198 1s96_A Guanylate kinase, GMP k 99.3 7.4E-14 2.5E-18 152.4 -2.4 127 843-1022 11-141 (219)
199 2qag_B Septin-6, protein NEDD5 99.3 1.4E-13 4.9E-18 162.6 -0.4 175 835-1020 28-218 (427)
200 2cvh_A DNA repair and recombin 99.3 1.5E-12 5.1E-17 142.1 7.0 153 837-1038 8-185 (220)
201 2ewv_A Twitching motility prot 99.3 7E-13 2.4E-17 156.4 3.7 131 837-1037 127-258 (372)
202 2qag_C Septin-7; cell cycle, c 99.3 3.9E-13 1.3E-17 159.9 1.3 157 129-355 16-176 (418)
203 1s96_A Guanylate kinase, GMP k 99.3 2.3E-13 7.7E-18 148.5 -0.8 148 145-388 11-162 (219)
204 3jvv_A Twitching mobility prot 99.3 6.3E-13 2.2E-17 155.2 1.8 59 305-373 188-246 (356)
205 1zp6_A Hypothetical protein AT 99.3 2E-14 6.7E-19 153.7 -10.3 141 844-1008 5-148 (191)
206 2bdt_A BH3686; alpha-beta prot 99.3 8.1E-15 2.8E-19 156.5 -13.7 167 848-1048 2-180 (189)
207 2gza_A Type IV secretion syste 99.3 1.3E-12 4.5E-17 153.6 3.3 137 837-1038 164-302 (361)
208 1htw_A HI0065; nucleotide-bind 99.2 2.3E-13 7.8E-18 140.5 -3.1 79 136-221 19-97 (158)
209 3kta_B Chromosome segregation 99.2 1.1E-11 3.8E-16 129.5 9.6 89 292-384 61-156 (173)
210 2bdt_A BH3686; alpha-beta prot 99.2 2.3E-14 7.8E-19 153.0 -11.8 169 150-384 2-182 (189)
211 1lw7_A Transcriptional regulat 99.2 1.2E-14 4E-19 172.0 -15.8 164 139-371 157-342 (365)
212 1lw7_A Transcriptional regulat 99.2 2.6E-14 8.9E-19 169.0 -13.4 163 837-1036 157-342 (365)
213 1nij_A Hypothetical protein YJ 99.2 5.5E-15 1.9E-19 171.2 -19.3 156 849-1022 5-190 (318)
214 1zp6_A Hypothetical protein AT 99.2 4.9E-12 1.7E-16 134.9 2.8 140 146-339 5-145 (191)
215 2cvh_A DNA repair and recombin 99.2 6.9E-11 2.4E-15 128.8 12.0 77 296-373 85-185 (220)
216 1pui_A ENGB, probable GTP-bind 99.2 9.7E-13 3.3E-17 142.5 -3.5 66 274-343 132-198 (210)
217 2bbw_A Adenylate kinase 4, AK4 99.2 7.1E-14 2.4E-18 155.9 -12.9 148 847-1011 26-200 (246)
218 2gza_A Type IV secretion syste 99.2 6.8E-12 2.3E-16 147.5 3.0 66 139-207 164-231 (361)
219 3auy_A DNA double-strand break 99.1 8E-11 2.7E-15 139.3 11.6 77 960-1039 279-362 (371)
220 1n0w_A DNA repair protein RAD5 99.1 2.9E-11 1E-15 133.9 7.4 151 843-1038 19-209 (243)
221 2bbw_A Adenylate kinase 4, AK4 99.1 9.8E-13 3.4E-17 146.6 -4.6 157 149-343 26-198 (246)
222 2qag_B Septin-6, protein NEDD5 99.1 6E-12 2.1E-16 148.8 1.8 177 134-352 25-214 (427)
223 2f1r_A Molybdopterin-guanine d 99.1 5E-13 1.7E-17 139.8 -7.3 112 151-317 3-125 (171)
224 2rcn_A Probable GTPase ENGC; Y 99.1 9.6E-12 3.3E-16 144.3 2.2 122 838-976 206-328 (358)
225 1udx_A The GTP-binding protein 99.1 4.1E-12 1.4E-16 151.1 -2.2 171 838-1033 147-320 (416)
226 2yhs_A FTSY, cell division pro 99.1 1.2E-11 4E-16 147.9 1.2 153 838-1019 283-447 (503)
227 2ewv_A Twitching motility prot 99.1 1.3E-11 4.4E-16 145.6 1.2 131 139-371 127-257 (372)
228 1htw_A HI0065; nucleotide-bind 99.1 5.1E-12 1.8E-16 130.4 -2.1 78 835-918 20-97 (158)
229 1n0w_A DNA repair protein RAD5 99.1 7.5E-11 2.6E-15 130.6 7.0 29 145-173 19-47 (243)
230 2f1r_A Molybdopterin-guanine d 99.1 6.2E-13 2.1E-17 139.0 -9.3 139 849-1012 3-164 (171)
231 3ec2_A DNA replication protein 99.1 4.5E-11 1.5E-15 126.3 4.8 47 977-1023 98-145 (180)
232 1odf_A YGR205W, hypothetical 3 99.1 1.6E-11 5.6E-16 139.5 1.1 127 148-330 29-169 (290)
233 2kjq_A DNAA-related protein; s 99.1 7.7E-11 2.6E-15 120.5 6.0 44 977-1021 81-125 (149)
234 2rcn_A Probable GTPase ENGC; Y 99.1 1.9E-11 6.5E-16 141.8 1.1 122 139-310 205-328 (358)
235 3e70_C DPA, signal recognition 99.0 1.4E-11 4.7E-16 142.3 -1.1 143 845-1020 126-278 (328)
236 1w1w_A Structural maintenance 99.0 2.1E-10 7.2E-15 138.5 9.2 75 961-1037 333-411 (430)
237 2yhs_A FTSY, cell division pro 99.0 4.2E-11 1.4E-15 143.2 2.7 81 140-223 283-372 (503)
238 2qm8_A GTPase/ATPase; G protei 99.0 1.5E-12 5.2E-17 151.5 -9.9 181 136-342 41-259 (337)
239 2qm8_A GTPase/ATPase; G protei 99.0 1.2E-12 4.2E-17 152.3 -10.8 165 835-1009 42-260 (337)
240 1nij_A Hypothetical protein YJ 99.0 7.6E-13 2.6E-17 153.1 -12.9 165 150-365 4-197 (318)
241 3e70_C DPA, signal recognition 99.0 4.8E-11 1.6E-15 137.8 0.4 74 147-223 126-208 (328)
242 1odf_A YGR205W, hypothetical 3 99.0 2.6E-11 9E-16 137.8 -2.7 132 846-996 29-169 (290)
243 2oap_1 GSPE-2, type II secreti 99.0 2.9E-13 9.8E-18 165.5 -20.5 177 835-1029 247-457 (511)
244 1p9r_A General secretion pathw 99.0 1E-11 3.6E-16 147.8 -6.8 139 135-318 154-314 (418)
245 3auy_A DNA double-strand break 99.0 1.4E-09 4.8E-14 128.6 11.2 98 270-371 244-359 (371)
246 1udx_A The GTP-binding protein 99.0 1.9E-11 6.5E-16 145.3 -4.9 170 140-367 147-319 (416)
247 3lda_A DNA repair protein RAD5 98.9 4.1E-10 1.4E-14 133.3 6.1 151 843-1038 173-363 (400)
248 2yv5_A YJEQ protein; hydrolase 98.9 5.9E-11 2E-15 136.1 -2.3 122 845-975 162-301 (302)
249 1sxj_E Activator 1 40 kDa subu 98.9 8.1E-10 2.8E-14 129.7 6.0 163 851-1059 39-203 (354)
250 2yv5_A YJEQ protein; hydrolase 98.9 2.4E-10 8.3E-15 131.0 1.5 123 148-308 163-300 (302)
251 1p9r_A General secretion pathw 98.9 4.2E-12 1.4E-16 151.2 -14.2 136 835-984 156-314 (418)
252 2oap_1 GSPE-2, type II secreti 98.9 2.2E-11 7.6E-16 148.8 -8.9 84 138-224 248-331 (511)
253 2x8a_A Nuclear valosin-contain 98.9 1.4E-11 4.6E-16 139.5 -10.3 143 136-338 32-190 (274)
254 3ec2_A DNA replication protein 98.8 6.2E-10 2.1E-14 117.5 2.5 48 311-359 98-146 (180)
255 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.1E-11 3.9E-16 145.7 -13.6 168 146-382 16-209 (392)
256 1lvg_A Guanylate kinase, GMP k 98.8 2.3E-12 7.8E-17 138.7 -18.1 57 306-372 116-173 (198)
257 3lda_A DNA repair protein RAD5 98.8 2.9E-09 1E-13 126.0 6.1 62 312-374 272-364 (400)
258 3c8u_A Fructokinase; YP_612366 98.8 2.9E-11 9.8E-16 131.1 -10.7 148 845-1031 19-168 (208)
259 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 8.4E-12 2.9E-16 146.9 -16.1 170 844-1048 16-209 (392)
260 3c8u_A Fructokinase; YP_612366 98.8 1.6E-10 5.5E-15 125.2 -5.4 30 147-176 19-48 (208)
261 1sq5_A Pantothenate kinase; P- 98.7 3.6E-10 1.2E-14 130.0 -5.0 73 148-225 78-155 (308)
262 2kjq_A DNAA-related protein; s 98.7 1.6E-08 5.6E-13 103.2 7.8 33 139-176 30-62 (149)
263 1sq5_A Pantothenate kinase; P- 98.7 1.3E-10 4.5E-15 133.8 -9.1 97 810-923 38-156 (308)
264 1t9h_A YLOQ, probable GTPase E 98.7 1.2E-09 4E-14 124.6 -1.8 118 843-968 168-302 (307)
265 1u0l_A Probable GTPase ENGC; p 98.7 2.4E-09 8.2E-14 122.7 0.4 73 146-222 165-259 (301)
266 1in4_A RUVB, holliday junction 98.7 1.8E-10 6.1E-15 134.3 -9.3 156 136-345 30-196 (334)
267 1sxj_E Activator 1 40 kDa subu 98.7 1.9E-08 6.6E-13 117.9 7.4 135 153-358 39-175 (354)
268 1lvg_A Guanylate kinase, GMP k 98.7 1E-11 3.6E-16 133.5 -19.1 56 972-1036 116-172 (198)
269 2dr3_A UPF0273 protein PH0284; 98.6 2.9E-09 1E-13 118.0 -0.3 60 978-1037 127-196 (247)
270 2r6a_A DNAB helicase, replicat 98.6 1.5E-08 5E-13 123.1 5.7 179 836-1039 191-400 (454)
271 1u0l_A Probable GTPase ENGC; p 98.6 1.3E-09 4.5E-14 124.9 -3.9 101 845-954 166-289 (301)
272 1in4_A RUVB, holliday junction 98.6 2.7E-10 9.2E-15 132.8 -10.3 150 835-1009 31-194 (334)
273 1t9h_A YLOQ, probable GTPase E 98.6 7E-09 2.4E-13 118.2 1.5 72 145-220 168-248 (307)
274 2x8a_A Nuclear valosin-contain 98.6 3.2E-11 1.1E-15 136.4 -18.2 128 835-990 33-164 (274)
275 1vma_A Cell division protein F 98.5 2.4E-08 8.3E-13 114.0 3.4 112 841-1007 97-211 (306)
276 1ls1_A Signal recognition part 98.5 1.4E-07 4.9E-12 107.4 9.2 127 839-1017 91-218 (295)
277 3euj_A Chromosome partition pr 98.5 2.3E-08 7.9E-13 120.3 2.3 53 137-193 17-69 (483)
278 3lnc_A Guanylate kinase, GMP k 98.5 1.6E-10 5.4E-15 127.4 -16.0 38 836-873 15-53 (231)
279 1vma_A Cell division protein F 98.5 1E-07 3.5E-12 108.8 6.8 113 143-342 97-212 (306)
280 2zr9_A Protein RECA, recombina 98.5 2.6E-07 8.8E-12 107.8 9.8 78 968-1046 126-237 (349)
281 2px0_A Flagellar biosynthesis 98.5 2E-07 6.7E-12 106.3 8.1 142 148-378 103-247 (296)
282 2dr3_A UPF0273 protein PH0284; 98.4 5.3E-07 1.8E-11 99.6 11.3 60 312-372 127-196 (247)
283 1iy2_A ATP-dependent metallopr 98.4 6.6E-10 2.2E-14 126.1 -12.7 77 137-220 62-142 (278)
284 3k1j_A LON protease, ATP-depen 98.4 1.4E-08 4.7E-13 127.8 -2.3 161 135-340 45-227 (604)
285 1ixz_A ATP-dependent metallopr 98.4 9.9E-10 3.4E-14 122.8 -11.5 76 137-219 38-117 (254)
286 2px0_A Flagellar biosynthesis 98.4 4E-07 1.4E-11 103.7 9.6 140 846-1042 103-246 (296)
287 1oix_A RAS-related protein RAB 98.4 3.6E-08 1.2E-12 105.0 0.6 38 968-1007 152-189 (191)
288 3tr0_A Guanylate kinase, GMP k 98.3 2.6E-08 9E-13 107.1 -2.6 71 144-221 1-74 (205)
289 3euj_A Chromosome partition pr 98.3 4.9E-08 1.7E-12 117.4 -1.2 51 836-889 18-68 (483)
290 2ius_A DNA translocase FTSK; n 98.3 1.1E-08 3.7E-13 124.0 -7.5 163 841-1022 160-343 (512)
291 2r6a_A DNAB helicase, replicat 98.3 3E-07 1E-11 111.6 4.2 182 137-375 190-401 (454)
292 1oix_A RAS-related protein RAB 98.3 1.4E-07 4.9E-12 100.3 1.2 44 296-341 146-189 (191)
293 2ius_A DNA translocase FTSK; n 98.3 9.6E-08 3.3E-12 115.7 -0.3 167 143-358 160-343 (512)
294 1ls1_A Signal recognition part 98.3 1.8E-06 6.2E-11 98.3 10.2 117 141-340 91-208 (295)
295 3k1j_A LON protease, ATP-depen 98.3 1.8E-08 6E-13 126.8 -7.4 157 834-1006 46-227 (604)
296 1iy2_A ATP-dependent metallopr 98.3 1.1E-09 3.8E-14 124.2 -16.7 124 835-982 62-190 (278)
297 3tr0_A Guanylate kinase, GMP k 98.3 5E-08 1.7E-12 104.9 -2.9 61 842-908 1-64 (205)
298 3hr8_A Protein RECA; alpha and 98.2 8E-07 2.7E-11 103.2 6.3 41 145-188 56-97 (356)
299 1ixz_A ATP-dependent metallopr 98.2 1.5E-09 5.3E-14 121.2 -16.2 128 835-988 38-170 (254)
300 2zr9_A Protein RECA, recombina 98.2 1E-06 3.5E-11 102.7 6.4 31 145-175 56-86 (349)
301 2f9l_A RAB11B, member RAS onco 98.2 3.6E-07 1.2E-11 97.7 1.1 37 970-1008 130-166 (199)
302 3lnc_A Guanylate kinase, GMP k 98.1 7E-07 2.4E-11 98.0 2.4 40 137-176 14-54 (231)
303 1qhl_A Protein (cell division 98.1 1.3E-07 4.3E-12 103.2 -4.6 59 144-206 22-91 (227)
304 2ce7_A Cell division protein F 98.0 5E-06 1.7E-10 100.4 7.7 59 964-1022 93-165 (476)
305 2qtf_A Protein HFLX, GTP-bindi 98.0 3.8E-06 1.3E-10 98.5 5.9 157 152-343 181-353 (364)
306 3hr8_A Protein RECA; alpha and 98.0 2.6E-06 8.9E-11 99.0 4.1 30 843-872 56-85 (356)
307 2qtf_A Protein HFLX, GTP-bindi 98.0 2.3E-06 7.8E-11 100.3 3.1 150 848-1009 178-353 (364)
308 4eun_A Thermoresistant glucoki 98.0 4E-07 1.4E-11 97.7 -3.2 72 144-222 23-96 (200)
309 4eun_A Thermoresistant glucoki 97.9 5.4E-07 1.9E-11 96.6 -3.3 56 842-903 23-80 (200)
310 1qhl_A Protein (cell division 97.9 2.9E-07 9.9E-12 100.4 -6.0 59 842-903 22-91 (227)
311 4a1f_A DNAB helicase, replicat 97.9 8.5E-06 2.9E-10 93.9 5.4 128 837-1019 35-164 (338)
312 2xau_A PRE-mRNA-splicing facto 97.9 6.9E-06 2.4E-10 105.7 5.2 74 961-1035 190-265 (773)
313 2ce7_A Cell division protein F 97.8 3.4E-05 1.2E-09 93.2 9.9 34 139-174 40-73 (476)
314 2f9l_A RAB11B, member RAS onco 97.8 1.2E-05 4E-10 85.9 4.7 38 303-342 129-166 (199)
315 2dhr_A FTSH; AAA+ protein, hex 97.8 6.4E-07 2.2E-11 108.8 -6.1 49 138-193 54-102 (499)
316 3kta_A Chromosome segregation 97.8 9.4E-06 3.2E-10 85.3 3.7 36 141-177 18-53 (182)
317 2e87_A Hypothetical protein PH 97.8 3.8E-05 1.3E-09 90.0 8.9 60 961-1022 231-293 (357)
318 1zu4_A FTSY; GTPase, signal re 97.7 5.8E-06 2E-10 95.1 0.8 81 139-222 94-187 (320)
319 2j41_A Guanylate kinase; GMP, 97.7 1.1E-05 3.7E-10 86.5 2.8 32 146-177 2-33 (207)
320 3a00_A Guanylate kinase, GMP k 97.6 1.3E-05 4.4E-10 84.8 1.7 27 150-176 1-27 (186)
321 3vaa_A Shikimate kinase, SK; s 97.6 1.8E-05 6E-10 84.7 2.6 40 136-175 11-50 (199)
322 4e22_A Cytidylate kinase; P-lo 97.6 5.3E-06 1.8E-10 92.4 -1.6 62 139-206 19-95 (252)
323 3bh0_A DNAB-like replicative h 97.6 9.1E-05 3.1E-09 85.1 8.7 35 836-870 56-90 (315)
324 3uie_A Adenylyl-sulfate kinase 97.6 3.4E-06 1.2E-10 90.4 -3.1 52 136-191 11-64 (200)
325 4a1f_A DNAB helicase, replicat 97.6 9.7E-05 3.3E-09 85.1 8.9 139 136-372 32-170 (338)
326 3nwj_A ATSK2; P loop, shikimat 97.6 4.4E-06 1.5E-10 92.6 -2.3 52 809-872 17-72 (250)
327 2xau_A PRE-mRNA-splicing facto 97.5 4.5E-05 1.5E-09 98.2 5.4 74 293-367 188-262 (773)
328 2j41_A Guanylate kinase; GMP, 97.5 2.8E-05 9.7E-10 83.2 2.8 30 844-873 2-31 (207)
329 2dy1_A Elongation factor G; tr 97.5 2.9E-05 9.9E-10 98.3 3.0 132 843-1023 4-138 (665)
330 3nwj_A ATSK2; P loop, shikimat 97.5 7.5E-06 2.6E-10 90.7 -2.2 41 135-175 30-73 (250)
331 1kgd_A CASK, peripheral plasma 97.5 3.9E-05 1.3E-09 80.6 3.1 38 148-187 3-40 (180)
332 1zu4_A FTSY; GTPase, signal re 97.4 1.9E-05 6.5E-10 90.7 0.1 50 837-888 94-143 (320)
333 3kta_A Chromosome segregation 97.4 3.5E-05 1.2E-09 80.9 1.8 33 839-872 18-50 (182)
334 2dhr_A FTSH; AAA+ protein, hex 97.4 8.5E-07 2.9E-11 107.7 -12.1 129 836-990 54-187 (499)
335 4e22_A Cytidylate kinase; P-lo 97.4 1.5E-05 5.1E-10 88.7 -1.8 57 846-904 25-96 (252)
336 1ega_A Protein (GTP-binding pr 97.4 0.00027 9.3E-09 80.6 8.3 153 848-1034 8-171 (301)
337 3t34_A Dynamin-related protein 97.4 0.00025 8.6E-09 83.1 8.3 57 962-1019 155-212 (360)
338 3a00_A Guanylate kinase, GMP k 97.4 3E-05 1E-09 81.9 0.3 26 848-873 1-26 (186)
339 3vaa_A Shikimate kinase, SK; s 97.3 6.9E-05 2.4E-09 80.0 3.0 38 835-872 12-49 (199)
340 1fnn_A CDC6P, cell division co 97.3 0.00035 1.2E-08 82.3 9.2 44 978-1022 124-170 (389)
341 2vp4_A Deoxynucleoside kinase; 97.3 4.8E-05 1.6E-09 83.3 1.3 42 143-191 13-54 (230)
342 1jjv_A Dephospho-COA kinase; P 97.3 2.8E-05 9.5E-10 83.5 -0.9 70 963-1036 61-131 (206)
343 2vp4_A Deoxynucleoside kinase; 97.3 4.5E-05 1.5E-09 83.5 0.8 41 842-888 14-54 (230)
344 1svm_A Large T antigen; AAA+ f 97.3 4.4E-05 1.5E-09 89.5 0.3 44 137-186 156-199 (377)
345 3t34_A Dynamin-related protein 97.3 3.8E-05 1.3E-09 90.1 -0.2 34 137-173 24-57 (360)
346 3tau_A Guanylate kinase, GMP k 97.2 0.00015 5E-09 78.0 3.6 29 148-176 6-34 (208)
347 1kgd_A CASK, peripheral plasma 97.2 0.00012 4E-09 76.9 2.6 38 847-885 4-41 (180)
348 1rz3_A Hypothetical protein rb 97.2 8.4E-05 2.9E-09 79.5 1.4 41 147-190 19-59 (201)
349 3bh0_A DNAB-like replicative h 97.2 0.00078 2.7E-08 77.3 9.5 39 136-174 54-92 (315)
350 3ney_A 55 kDa erythrocyte memb 97.2 0.00014 4.7E-09 77.3 2.8 29 147-175 16-44 (197)
351 1jjv_A Dephospho-COA kinase; P 97.1 0.00033 1.1E-08 75.0 5.5 69 297-371 61-131 (206)
352 3b9p_A CG5977-PA, isoform A; A 97.1 0.0017 6E-08 73.5 11.8 60 963-1022 97-170 (297)
353 1v5w_A DMC1, meiotic recombina 97.1 0.0013 4.6E-08 76.3 11.0 34 838-871 111-145 (343)
354 1knq_A Gluconate kinase; ALFA/ 97.1 0.00015 5.1E-09 75.4 2.6 36 148-190 6-41 (175)
355 2z43_A DNA repair and recombin 97.1 0.0015 5.1E-08 75.2 10.8 34 837-870 95-129 (324)
356 2qt1_A Nicotinamide riboside k 97.1 0.00028 9.6E-09 75.6 4.1 30 146-175 17-46 (207)
357 3tqc_A Pantothenate kinase; bi 97.1 5.3E-05 1.8E-09 86.8 -1.7 40 137-176 73-118 (321)
358 2e87_A Hypothetical protein PH 97.1 0.0014 4.8E-08 76.6 10.3 57 294-353 230-287 (357)
359 3b9p_A CG5977-PA, isoform A; A 97.0 0.003 1E-07 71.5 12.7 27 148-174 52-78 (297)
360 3uie_A Adenylyl-sulfate kinase 97.0 9.1E-05 3.1E-09 79.1 -0.3 50 836-888 13-64 (200)
361 1v5w_A DMC1, meiotic recombina 97.0 0.0032 1.1E-07 73.0 12.7 35 139-173 110-145 (343)
362 2z43_A DNA repair and recombin 97.0 0.0024 8.1E-08 73.6 11.4 36 139-174 95-131 (324)
363 1svm_A Large T antigen; AAA+ f 97.0 0.00011 3.7E-09 86.2 0.0 37 836-872 157-193 (377)
364 3tau_A Guanylate kinase, GMP k 97.0 0.00028 9.6E-09 75.8 3.0 28 846-873 6-33 (208)
365 2dy1_A Elongation factor G; tr 97.0 0.00012 4E-09 92.7 -0.0 47 145-193 4-50 (665)
366 2q6t_A DNAB replication FORK h 96.9 0.0014 4.8E-08 79.0 9.2 168 837-1037 189-397 (444)
367 3cr8_A Sulfate adenylyltranfer 96.9 0.00019 6.6E-09 88.2 1.2 42 146-190 365-408 (552)
368 1fnn_A CDC6P, cell division co 96.8 0.0045 1.5E-07 72.7 12.2 28 149-176 41-70 (389)
369 1kag_A SKI, shikimate kinase I 96.8 0.00039 1.3E-08 72.0 2.7 27 149-175 3-29 (173)
370 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00061 2.1E-08 69.1 3.9 31 141-172 15-45 (149)
371 2qt1_A Nicotinamide riboside k 96.8 0.0006 2E-08 73.0 4.0 29 844-872 17-45 (207)
372 1knq_A Gluconate kinase; ALFA/ 96.8 0.00027 9.4E-09 73.4 1.3 36 846-887 6-41 (175)
373 2z4s_A Chromosomal replication 96.8 0.00055 1.9E-08 82.4 3.9 70 978-1048 193-264 (440)
374 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00058 2E-08 69.3 3.1 29 840-869 16-44 (149)
375 3kl4_A SRP54, signal recogniti 96.7 0.0017 5.7E-08 77.3 7.3 26 847-872 96-121 (433)
376 1rz3_A Hypothetical protein rb 96.7 0.00024 8E-09 76.0 0.0 41 845-887 19-59 (201)
377 3tqc_A Pantothenate kinase; bi 96.7 0.00011 3.7E-09 84.2 -3.4 41 833-873 71-117 (321)
378 3ney_A 55 kDa erythrocyte memb 96.6 0.00061 2.1E-08 72.2 2.4 28 846-873 17-44 (197)
379 2qby_A CDC6 homolog 1, cell di 96.6 0.0005 1.7E-08 80.7 1.9 27 846-872 43-69 (386)
380 1ypw_A Transitional endoplasmi 96.6 0.0014 4.8E-08 84.8 6.0 31 843-873 233-263 (806)
381 2p67_A LAO/AO transport system 96.6 0.00022 7.4E-09 82.9 -1.5 49 137-188 43-91 (341)
382 3ice_A Transcription terminati 96.6 0.00046 1.6E-08 79.6 0.9 51 809-871 133-197 (422)
383 2www_A Methylmalonic aciduria 96.6 0.00058 2E-08 79.5 1.8 41 148-191 72-112 (349)
384 3cf0_A Transitional endoplasmi 96.5 0.0015 5E-08 74.5 4.4 29 844-872 45-73 (301)
385 2z4s_A Chromosomal replication 96.5 0.0007 2.4E-08 81.4 1.7 69 312-381 193-263 (440)
386 3kl4_A SRP54, signal recogniti 96.4 0.0048 1.6E-07 73.3 8.5 35 149-186 96-130 (433)
387 4eaq_A DTMP kinase, thymidylat 96.4 0.0011 3.8E-08 72.3 2.9 37 140-176 13-52 (229)
388 3m6a_A ATP-dependent protease 96.4 0.00038 1.3E-08 86.0 -1.0 48 137-188 96-143 (543)
389 3cr8_A Sulfate adenylyltranfer 96.4 0.00042 1.4E-08 85.2 -0.8 42 844-887 365-408 (552)
390 2gj8_A MNME, tRNA modification 96.4 0.0028 9.7E-08 65.5 5.6 27 846-872 2-28 (172)
391 4fcw_A Chaperone protein CLPB; 96.4 0.0083 2.8E-07 68.2 10.0 28 149-176 46-73 (311)
392 1kag_A SKI, shikimate kinase I 96.4 0.001 3.5E-08 68.7 2.0 26 847-872 3-28 (173)
393 2pez_A Bifunctional 3'-phospho 96.4 0.00094 3.2E-08 69.7 1.6 38 148-189 3-42 (179)
394 2ffh_A Protein (FFH); SRP54, s 96.3 0.0022 7.5E-08 76.1 4.9 46 839-888 91-136 (425)
395 3llm_A ATP-dependent RNA helic 96.3 0.012 4E-07 64.3 9.8 67 963-1031 162-229 (235)
396 2qag_A Septin-2, protein NEDD5 96.2 0.00036 1.2E-08 81.7 -2.5 78 135-221 28-105 (361)
397 2gj8_A MNME, tRNA modification 96.2 0.0037 1.3E-07 64.6 5.5 27 148-174 2-28 (172)
398 1m7g_A Adenylylsulfate kinase; 96.2 0.00098 3.3E-08 71.7 0.8 40 147-189 22-63 (211)
399 1mky_A Probable GTP-binding pr 96.2 0.0034 1.2E-07 75.5 5.6 71 151-221 181-263 (439)
400 2qby_A CDC6 homolog 1, cell di 96.2 0.0018 6.3E-08 75.8 3.2 29 148-176 43-71 (386)
401 1u94_A RECA protein, recombina 96.2 0.052 1.8E-06 63.0 15.1 30 145-174 58-87 (356)
402 3qks_A DNA double-strand break 96.1 0.0028 9.5E-08 67.8 3.9 31 142-173 16-46 (203)
403 2p67_A LAO/AO transport system 96.1 0.00048 1.6E-08 80.0 -2.3 38 835-872 43-80 (341)
404 1m2o_B GTP-binding protein SAR 96.1 0.0038 1.3E-07 65.6 4.8 35 836-871 12-46 (190)
405 3qks_A DNA double-strand break 96.1 0.0024 8.1E-08 68.3 3.1 29 840-869 16-44 (203)
406 3bgw_A DNAB-like replicative h 96.1 0.0054 1.8E-07 73.6 6.6 34 837-870 186-219 (444)
407 1mky_A Probable GTP-binding pr 96.0 0.0044 1.5E-07 74.5 5.4 38 850-887 182-229 (439)
408 3lxx_A GTPase IMAP family memb 96.0 0.025 8.4E-07 61.8 10.9 42 978-1019 111-154 (239)
409 2qag_A Septin-2, protein NEDD5 96.0 0.00062 2.1E-08 79.6 -2.2 45 809-872 17-61 (361)
410 3lxx_A GTPase IMAP family memb 96.0 0.018 6.3E-07 62.8 9.9 25 152-176 31-55 (239)
411 2qor_A Guanylate kinase; phosp 96.0 0.0024 8.2E-08 68.2 2.5 29 147-175 9-37 (204)
412 1m2o_B GTP-binding protein SAR 96.0 0.0043 1.5E-07 65.2 4.4 34 139-173 13-46 (190)
413 3h4m_A Proteasome-activating n 96.0 0.0075 2.6E-07 67.7 6.7 28 845-872 48-75 (285)
414 1np6_A Molybdopterin-guanine d 96.0 0.0032 1.1E-07 65.5 3.2 40 151-190 7-46 (174)
415 1cke_A CK, MSSA, protein (cyti 96.0 0.0026 8.7E-08 68.9 2.6 37 150-186 5-41 (227)
416 1u94_A RECA protein, recombina 95.9 0.024 8.1E-07 65.9 10.7 33 838-870 51-85 (356)
417 1y63_A LMAJ004144AAA protein; 95.9 0.0031 1.1E-07 66.1 2.9 32 142-173 2-33 (184)
418 2www_A Methylmalonic aciduria 95.9 0.0015 5E-08 76.1 0.3 40 846-887 72-111 (349)
419 4eaq_A DTMP kinase, thymidylat 95.9 0.0033 1.1E-07 68.5 3.0 37 837-873 12-51 (229)
420 3m6a_A ATP-dependent protease 95.8 0.0017 5.7E-08 80.3 0.5 49 836-887 97-145 (543)
421 2yvu_A Probable adenylyl-sulfa 95.8 0.0028 9.5E-08 66.5 2.0 30 147-176 10-39 (186)
422 1f6b_A SAR1; gtpases, N-termin 95.8 0.0023 7.8E-08 67.9 1.3 35 138-173 14-48 (198)
423 2b8t_A Thymidine kinase; deoxy 95.8 0.011 3.8E-07 63.9 6.6 53 979-1036 89-150 (223)
424 2p5t_B PEZT; postsegregational 95.7 0.0028 9.5E-08 70.2 1.6 40 146-190 28-67 (253)
425 2ffh_A Protein (FFH); SRP54, s 95.7 0.0035 1.2E-07 74.3 2.3 45 141-190 91-135 (425)
426 1f6b_A SAR1; gtpases, N-termin 95.6 0.003 1E-07 67.0 1.5 35 836-871 14-48 (198)
427 3llm_A ATP-dependent RNA helic 95.6 0.0023 7.9E-08 70.0 0.5 66 298-366 163-229 (235)
428 3h4m_A Proteasome-activating n 95.6 0.025 8.7E-07 63.3 9.0 29 147-175 48-76 (285)
429 2w58_A DNAI, primosome compone 95.6 0.0077 2.6E-07 63.9 4.4 113 847-1029 53-167 (202)
430 2i1q_A DNA repair and recombin 95.6 0.055 1.9E-06 61.9 11.9 124 845-1019 95-257 (322)
431 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0015 5.2E-08 75.1 -1.2 37 139-175 11-49 (359)
432 1j8m_F SRP54, signal recogniti 95.5 0.0026 8.9E-08 72.1 0.6 46 141-190 89-135 (297)
433 2pez_A Bifunctional 3'-phospho 95.5 0.005 1.7E-07 64.1 2.7 27 846-872 3-29 (179)
434 2ohf_A Protein OLA1, GTP-bindi 95.5 0.0054 1.9E-07 71.9 3.3 31 143-173 15-45 (396)
435 2wji_A Ferrous iron transport 95.5 0.012 4E-07 60.2 5.2 23 850-872 5-27 (165)
436 1cke_A CK, MSSA, protein (cyti 95.4 0.0052 1.8E-07 66.5 2.5 56 848-903 5-73 (227)
437 3d8b_A Fidgetin-like protein 1 95.4 0.042 1.4E-06 63.9 10.4 27 846-872 115-141 (357)
438 1l8q_A Chromosomal replication 95.4 0.0097 3.3E-07 68.3 4.8 45 977-1021 96-141 (324)
439 2qor_A Guanylate kinase; phosp 95.4 0.0054 1.8E-07 65.4 2.4 28 845-872 9-36 (204)
440 1lv7_A FTSH; alpha/beta domain 95.4 0.0075 2.6E-07 66.7 3.6 45 139-190 36-80 (257)
441 2q6t_A DNAB replication FORK h 95.3 0.035 1.2E-06 66.6 9.5 38 137-174 187-224 (444)
442 2wjg_A FEOB, ferrous iron tran 95.3 0.015 5.1E-07 60.5 5.2 22 850-871 9-30 (188)
443 1y63_A LMAJ004144AAA protein; 95.2 0.0071 2.4E-07 63.3 2.6 32 840-871 2-33 (184)
444 2if2_A Dephospho-COA kinase; a 95.2 0.0075 2.5E-07 64.1 2.8 21 152-172 3-23 (204)
445 3cm0_A Adenylate kinase; ATP-b 95.2 0.0092 3.2E-07 62.2 3.3 27 148-174 2-28 (186)
446 1ega_A Protein (GTP-binding pr 95.1 0.0074 2.5E-07 68.6 2.6 65 296-367 101-169 (301)
447 2v1u_A Cell division control p 95.1 0.026 8.9E-07 65.9 7.4 27 846-872 42-68 (387)
448 3t61_A Gluconokinase; PSI-biol 95.1 0.0064 2.2E-07 64.6 1.9 25 150-174 18-42 (202)
449 1qhx_A CPT, protein (chloramph 95.1 0.0093 3.2E-07 61.7 3.1 26 150-175 3-28 (178)
450 3bos_A Putative DNA replicatio 95.1 0.0084 2.9E-07 65.0 2.8 95 847-1021 51-148 (242)
451 1sxj_C Activator 1 40 kDa subu 95.1 0.0026 9E-08 73.7 -1.4 41 136-176 30-72 (340)
452 3kb2_A SPBC2 prophage-derived 95.0 0.0086 2.9E-07 61.4 2.5 24 152-175 3-26 (173)
453 2ohf_A Protein OLA1, GTP-bindi 95.0 0.0092 3.1E-07 69.9 2.9 44 843-886 17-69 (396)
454 1m7g_A Adenylylsulfate kinase; 95.0 0.0042 1.4E-07 66.6 -0.1 39 845-885 22-62 (211)
455 1q57_A DNA primase/helicase; d 95.0 0.15 5.1E-06 62.3 13.7 34 837-870 231-264 (503)
456 1gvn_B Zeta; postsegregational 95.0 0.012 4.2E-07 66.3 3.7 36 148-188 31-66 (287)
457 2wjg_A FEOB, ferrous iron tran 94.9 0.012 4E-07 61.2 3.3 22 152-173 9-30 (188)
458 3ice_A Transcription terminati 94.9 0.0079 2.7E-07 69.5 2.0 33 142-174 166-198 (422)
459 2b8t_A Thymidine kinase; deoxy 94.9 0.033 1.1E-06 60.1 6.8 53 313-371 89-150 (223)
460 2wji_A Ferrous iron transport 94.8 0.013 4.4E-07 59.9 3.3 23 152-174 5-27 (165)
461 2if2_A Dephospho-COA kinase; a 94.8 0.0093 3.2E-07 63.3 2.2 21 850-870 3-23 (204)
462 3d8b_A Fidgetin-like protein 1 94.8 0.13 4.3E-06 59.9 11.9 27 148-174 115-141 (357)
463 2ga8_A Hypothetical 39.9 kDa p 94.7 0.0039 1.3E-07 71.7 -1.2 37 836-872 10-48 (359)
464 3cf0_A Transitional endoplasmi 94.7 0.014 4.8E-07 66.3 3.4 30 146-175 45-74 (301)
465 1np6_A Molybdopterin-guanine d 94.7 0.013 4.5E-07 60.8 2.8 38 849-886 7-45 (174)
466 3r20_A Cytidylate kinase; stru 94.6 0.012 4.1E-07 64.1 2.5 24 151-174 10-33 (233)
467 2rhm_A Putative kinase; P-loop 94.6 0.014 4.8E-07 61.2 3.0 27 148-174 3-29 (193)
468 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.16 5.4E-06 58.1 12.0 28 845-872 42-69 (322)
469 2ze6_A Isopentenyl transferase 94.6 0.014 4.7E-07 64.6 2.8 25 151-175 2-26 (253)
470 1q3t_A Cytidylate kinase; nucl 94.5 0.014 4.7E-07 63.8 2.6 29 146-174 12-40 (236)
471 1kht_A Adenylate kinase; phosp 94.5 0.017 5.9E-07 60.3 3.2 26 150-175 3-28 (192)
472 2yvu_A Probable adenylyl-sulfa 94.4 0.015 5.2E-07 60.8 2.6 29 844-872 9-37 (186)
473 3bgw_A DNAB-like replicative h 94.4 0.077 2.6E-06 63.6 9.0 38 137-174 184-221 (444)
474 1j8m_F SRP54, signal recogniti 94.3 0.0056 1.9E-07 69.4 -1.0 46 839-887 89-135 (297)
475 2v54_A DTMP kinase, thymidylat 94.3 0.02 6.7E-07 60.6 3.1 27 148-174 2-28 (204)
476 2zej_A Dardarin, leucine-rich 94.2 0.02 6.7E-07 59.6 3.0 22 850-871 4-25 (184)
477 2plr_A DTMP kinase, probable t 94.2 0.02 6.9E-07 60.8 3.0 28 149-176 3-30 (213)
478 2zej_A Dardarin, leucine-rich 94.1 0.02 6.9E-07 59.5 2.9 23 152-174 4-26 (184)
479 3trf_A Shikimate kinase, SK; a 94.1 0.022 7.7E-07 59.2 3.2 26 149-174 4-29 (185)
480 3lw7_A Adenylate kinase relate 94.1 0.022 7.5E-07 58.3 3.0 19 152-170 3-21 (179)
481 3t61_A Gluconokinase; PSI-biol 94.1 0.015 5.3E-07 61.6 1.9 25 848-872 18-42 (202)
482 2v1u_A Cell division control p 94.1 0.074 2.5E-06 62.0 7.9 28 148-175 42-69 (387)
483 1ly1_A Polynucleotide kinase; 94.1 0.025 8.5E-07 58.4 3.4 22 151-172 3-24 (181)
484 2qz4_A Paraplegin; AAA+, SPG7, 94.1 0.091 3.1E-06 57.8 8.2 120 845-1036 36-175 (262)
485 3cm0_A Adenylate kinase; ATP-b 94.1 0.02 7E-07 59.6 2.7 25 846-870 2-26 (186)
486 1ex7_A Guanylate kinase; subst 94.0 0.019 6.4E-07 60.3 2.3 24 152-175 3-26 (186)
487 2jaq_A Deoxyguanosine kinase; 94.0 0.021 7E-07 60.4 2.6 24 152-175 2-25 (205)
488 1ypw_A Transitional endoplasmi 94.0 0.018 6.2E-07 74.4 2.6 32 145-176 233-264 (806)
489 1via_A Shikimate kinase; struc 94.0 0.02 6.8E-07 59.2 2.4 24 152-175 6-29 (175)
490 2p5t_B PEZT; postsegregational 94.0 0.0094 3.2E-07 65.9 -0.2 45 837-886 22-66 (253)
491 1xjc_A MOBB protein homolog; s 94.0 0.022 7.6E-07 58.6 2.7 26 151-176 5-30 (169)
492 3iij_A Coilin-interacting nucl 93.9 0.023 7.8E-07 59.0 2.7 26 149-174 10-35 (180)
493 1xp8_A RECA protein, recombina 93.8 0.46 1.6E-05 55.2 13.7 120 845-1019 71-209 (366)
494 2wwf_A Thymidilate kinase, put 93.7 0.029 9.7E-07 59.8 3.2 27 148-174 8-34 (212)
495 2c95_A Adenylate kinase 1; tra 93.7 0.027 9.2E-07 59.1 2.9 27 148-174 7-33 (196)
496 1sxj_C Activator 1 40 kDa subu 93.7 0.0069 2.4E-07 70.1 -1.9 38 835-872 31-70 (340)
497 1vht_A Dephospho-COA kinase; s 93.7 0.031 1.1E-06 60.0 3.4 24 149-172 3-26 (218)
498 1qhx_A CPT, protein (chloramph 93.7 0.03 1E-06 57.8 3.0 25 848-872 3-27 (178)
499 1q3t_A Cytidylate kinase; nucl 93.7 0.026 8.7E-07 61.6 2.6 27 845-871 13-39 (236)
500 3kb2_A SPBC2 prophage-derived 93.6 0.029 9.9E-07 57.4 2.8 22 850-871 3-24 (173)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.8e-73 Score=769.11 Aligned_cols=214 Identities=27% Similarity=0.394 Sum_probs=182.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||+++|+.. .+.++|+|||++|+|||++||+||||||||||+++|.|... +.+|+|.|||.++
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEET
T ss_pred eEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEh
Confidence 69999999998632 23469999999999999999999999999999999999887 4689999999998
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
+. ..+|+.++||||++.++. -|++|||.|+.. +.+.+ ++.++++++..++.+. .|+.+|..|
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld---~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLD---PSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSC---TTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred hhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCC---CCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCC
Confidence 65 457788999999998886 499999987521 12222 3457888998887643 466676544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+++|+++. ...||+|++|++
T Consensus 1216 -~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~- 1290 (1321)
T 4f4c_A 1216 -TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN- 1290 (1321)
T ss_dssp -CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS-
T ss_pred -cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEEC-
Confidence 4799999999999999999999999999999999999999999999875 48999999999873 567999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++.+|+.
T Consensus 1291 G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 GTIIEKGTH 1299 (1321)
T ss_dssp SSEEEEECH
T ss_pred CEEEEECCH
Confidence 799999986
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.4e-66 Score=699.90 Aligned_cols=214 Identities=26% Similarity=0.375 Sum_probs=175.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||++.|+.. ++.++|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEc
Confidence 58999999988532 12359999999999999999999999999999999999887 4699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
+. ..+++.+|||+|++.++ ..||+||+.++... ...+. +.+++.++..++.+. .|+.+|..|
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred ccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCC---CCCCH----HHHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence 54 23567899999999776 46999999875311 11222 235566666665433 455566543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
..||||||||++|||||+++|+||+|||||||||+.+++.|++.|++. .+|+|||+++||++. + ..||||++|++
T Consensus 1170 -~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~- 1244 (1284)
T 3g5u_A 1170 -TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN- 1244 (1284)
T ss_dssp -CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET-
T ss_pred -CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999885 459999999999973 4 66999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 1245 G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 GKVKEHGTH 1253 (1284)
T ss_dssp BEEEEEECH
T ss_pred CEEEEECCH
Confidence 799999985
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.6e-57 Score=564.97 Aligned_cols=202 Identities=23% Similarity=0.286 Sum_probs=168.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ + ..|+++|++|++||++||+||||||||||+++|+|..+ +.+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE-----
Confidence 577888876552 1 26899999999999999999999999999999999877 35788875
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.+.+||++|+....+.+||.|++........ ...+.++++++.+++.+..++.++ .|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 2358999999877788999998865311110 112457889999999988888764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEec-CcEEEEEcC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 1046 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~-gg~~~~~G~ 1046 (1326)
||+|||+|+.+|+||||||||+|||+.++..+++.|++++ +.|.|||++|||+. .+...+||+++|++ .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 45999999999986 57778999999973 267778888
Q ss_pred CCC
Q 046656 1047 LGS 1049 (1326)
Q Consensus 1047 ~~~ 1049 (1326)
+.+
T Consensus 558 p~~ 560 (607)
T 3bk7_A 558 PMG 560 (607)
T ss_dssp CEE
T ss_pred HHH
Confidence 743
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.9e-57 Score=559.71 Aligned_cols=201 Identities=23% Similarity=0.288 Sum_probs=167.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ + ..|+++|++|++||++||+||||||||||+++|+|..+ +.+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE-----
Confidence 577888876552 1 36899999999999999999999999999999999876 35788875
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
...+||++|+....+.+||.|++........ . ..+.++++++.+++.+..++.++ .|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCChh-----hCCHHHHH
Confidence 1358999999877788999998765311110 0 12357889999999888877764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEec-CcEEEEEcC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 1046 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~-gg~~~~~G~ 1046 (1326)
||+|||+|+.+|++|||||||+|||+.++..+++.|++++ +.|.|||++|||++ ++...|||+++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 9999999999999999999999999999999999999987 45999999999986 57788999999984 267888898
Q ss_pred CC
Q 046656 1047 LG 1048 (1326)
Q Consensus 1047 ~~ 1048 (1326)
+.
T Consensus 488 ~~ 489 (538)
T 1yqt_A 488 PM 489 (538)
T ss_dssp CE
T ss_pred HH
Confidence 74
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.5e-56 Score=544.69 Aligned_cols=214 Identities=21% Similarity=0.242 Sum_probs=170.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|++..++ + ..|+++|++|++||++||+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC--
T ss_pred eEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe--
Confidence 467777765542 1 35778899999999999999999999999999999887 45899987653
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.++|++|+....+..||+|++.+... .. ... ....++++++.+++.+..++.++ .|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~--~~--~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASK--DA--LST--SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCS--ST--TCT--TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHH
T ss_pred -------eeEeechhcccccCCCHHHHHHHhhh--hc--cch--hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHH
Confidence 47999998777778899999986321 11 111 12347889999999988888764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecC-cEEEEEcC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGP 1046 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~g-g~~~~~G~ 1046 (1326)
||+|||||+.+|+||||||||+|||+.++..+++.|+++++ .|.|||++|||++ ++...|||+++|+++ |.....|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5899999999986 577789999999842 44555665
Q ss_pred CCCChhhHHHHHh
Q 046656 1047 LGSNSSDLISYLQ 1059 (1326)
Q Consensus 1047 ~~~~~~~~~~~f~ 1059 (1326)
.......+..|+.
T Consensus 472 ~~~~~~~~~~~~~ 484 (538)
T 3ozx_A 472 PVTLKTGMNEFLR 484 (538)
T ss_dssp CEEHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 5333333445554
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.3e-55 Score=562.10 Aligned_cols=187 Identities=22% Similarity=0.285 Sum_probs=150.1
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccC-CCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH-DVHIGE 212 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~-d~~~~~ 212 (1326)
++.+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+ +.+++.
T Consensus 445 yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ 510 (986)
T 2iw3_A 445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSD 510 (986)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTT
T ss_pred ECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccC
Confidence 345679999999999999999999999999999999995 222 3433211 1247899997 367889
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-ccccccccCc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTLVGDE 291 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~ 291 (1326)
+||.|++.+ ...+. ...++.+++.+||. +..+..
T Consensus 511 ltv~e~l~~--~~~~~---------------------------------------~~~v~~~L~~lgL~~~~~~~~---- 545 (986)
T 2iw3_A 511 TSVLDFVFE--SGVGT---------------------------------------KEAIKDKLIEFGFTDEMIAMP---- 545 (986)
T ss_dssp SBHHHHHHT--TCSSC---------------------------------------HHHHHHHHHHTTCCHHHHHSB----
T ss_pred CcHHHHHHH--hhcCH---------------------------------------HHHHHHHHHHcCCChhhhcCC----
Confidence 999999976 11100 01245678899994 455544
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
+..|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++ . +.+++.++|+..++.++||+|++|+
T Consensus 546 -~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~ 619 (986)
T 2iw3_A 546 -ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYE 619 (986)
T ss_dssp -GGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999987 2 4566668999999999999999999
Q ss_pred CCeEE-EEcChhhHH
Q 046656 372 DGQIV-YQGPCELVL 385 (1326)
Q Consensus 372 ~G~iv-~~G~~~~~~ 385 (1326)
+|+++ +.|+++++.
T Consensus 620 ~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 620 GLKLRKYKGNFTEFV 634 (986)
T ss_dssp TTEEEEEESCHHHHH
T ss_pred CCeeecCCCCHHHHH
Confidence 99997 789887653
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.8e-54 Score=548.54 Aligned_cols=214 Identities=21% Similarity=0.252 Sum_probs=136.6
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHH---------------------HHHhcccCCCCc----eeeEEEECCcc
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLL---------------------LALAGQLDSSLK----VSGRVTYNGHD 190 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~~~G~~ 190 (1326)
..++|+|||++|++||+++|+||||||||||+ +.+.|...|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35689999999999999999999999999998 788887777521 25677788766
Q ss_pred CCCCCccceEEEEccCCC-------------------CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCch
Q 046656 191 MNEFVPQRTAAYISQHDV-------------------HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251 (1326)
Q Consensus 191 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~ 251 (1326)
.... +++.++||+|... .++.+||+||+.+......... ..+....
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~--------~~~~~~~------ 174 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK--------EAQIARL------ 174 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh--------hhHHHHH------
Confidence 5322 2344556655432 2457899999987432210000 0000000
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHcCCccc-ccccccCccccCCChhhhHHHHHHHHhhcCCc--cceEecCCCCCCH
Q 046656 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVC-ADTLVGDEMVRGISGGQKKRLTTGEMMVGPAL--ALFMDEISNGLDS 328 (1326)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~--illLDEptsgLD~ 328 (1326)
...+.... -.+++.+||++. .| +.+..|||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 175 -----------~~~~~~~~-~~~l~~~gL~~~~~~-----~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 175 -----------ILREIRDR-LGFLQNVGLDYLTLS-----RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTT-----CBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -----------HHHHHHHH-HHHHHHcCCchhhhc-----CCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 00000111 235888999764 34 3455799999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe------cCCeEEEEcChhhH
Q 046656 329 STTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPCELV 384 (1326)
Q Consensus 329 ~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~ 384 (1326)
.++.++++.|+++.. . +.+|+.++|+...+ ..||+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-L-GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHH-T-TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 999999999999864 3 56677789998764 569999999 89999999998766
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-54 Score=534.95 Aligned_cols=190 Identities=18% Similarity=0.186 Sum_probs=157.0
Q ss_pred EeeecceeEEeCC-----eEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCC
Q 046656 836 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLV 910 (1326)
Q Consensus 836 ~vL~~vs~~i~~G-----e~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~ 910 (1326)
.+++|+|+++++| |++||+||||||||||+++|+|..++ .+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------cc----CCcEEEecccccccCCc
Confidence 4788999999888 78999999999999999999998874 46652 11 23589999987766678
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 046656 911 TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990 (1326)
Q Consensus 911 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts 990 (1326)
||+|++... .+. .... .+.++++++.++|.+..++.++ .|||||||||+|||+|+.+|+||||||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--cccc---HHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 111 1111 2356789999999998888764 599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEec-CcEEEEEcCCCCC
Q 046656 991 GLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGSN 1050 (1326)
Q Consensus 991 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~-gg~~~~~G~~~~~ 1050 (1326)
|||+.++..+++.|+++. +.|.|||++|||+. ++...+||+++|++ .|+++..|++.+.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 999999999999999986 45999999999986 57788999999985 2788999987543
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.4e-42 Score=396.54 Aligned_cols=218 Identities=22% Similarity=0.284 Sum_probs=190.9
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++.. .+...+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 48899999887521 123579999999999999999999999999999999999887 4699999999987
Q ss_pred Ccc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 889 KQE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 889 ~~~------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
... ..++.+||++|++.+++.+||+||+.|+...+ ..+.++.+++++++|+.+||.+..++.++ .|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTT-----TS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hC
Confidence 532 23567999999999999999999999986543 34566667789999999999998888764 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
||||||||+|||||+.+|+||||||||||||+.++..|+++|+++.++ |.|||++||+++ .+.+.|||+++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999754 999999999986 57788999999985 799
Q ss_pred EEEcCC
Q 046656 1042 IYVGPL 1047 (1326)
Q Consensus 1042 ~~~G~~ 1047 (1326)
++.|+.
T Consensus 243 v~~g~~ 248 (366)
T 3tui_C 243 IEQDTV 248 (366)
T ss_dssp EECCBH
T ss_pred EEEcCH
Confidence 999985
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.3e-41 Score=376.95 Aligned_cols=220 Identities=25% Similarity=0.361 Sum_probs=185.5
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++.. ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 5678888877421 112469999999999999999999999999999999999887 46999999998864
Q ss_pred ccc-------ccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 046656 890 QET-------FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQSLVGLPGESG 961 (1326)
Q Consensus 890 ~~~-------~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~ 961 (1326)
... .++.+||++|++.+++.+||+||+.++...+.......++..+.+.++++.++|.+. .+..++ .
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN-----Q 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG-----G
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChh-----h
Confidence 321 124599999999999999999999997654432334556666778999999999875 366653 5
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ +.+.||++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4578999999996 79
Q ss_pred EEEEcCCC
Q 046656 1041 EIYVGPLG 1048 (1326)
Q Consensus 1041 ~~~~G~~~ 1048 (1326)
++..|+..
T Consensus 223 i~~~~~~~ 230 (235)
T 3tif_A 223 VEREEKLR 230 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEcChh
Confidence 99988864
No 11
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.7e-41 Score=428.37 Aligned_cols=195 Identities=24% Similarity=0.352 Sum_probs=145.4
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHH---------hhhcCCCC--C--CeeE------EEEEEcCccCCccc-----
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT--G--GYIS------GNITISGYPKKQET----- 892 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl---------~~L~g~~~--~--~~~~------G~i~i~g~~~~~~~----- 892 (1326)
.|+|||++|++|++++|+|+||||||||+ +.+.+... + .... +.+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 33333211 0 0223 34556554432100
Q ss_pred ---------------------------------------ccceEEEeecCCCCCC-------------------------
Q 046656 893 ---------------------------------------FTRISGYCEQNDIHSP------------------------- 908 (1326)
Q Consensus 893 ---------------------------------------~~~~~gyv~Q~~~~~~------------------------- 908 (1326)
..+..|++.++..+++
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777665544
Q ss_pred -------CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 046656 909 -------LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-QSLVGLPGESGLSTEQRKRLTIAVELVANP 980 (1326)
Q Consensus 909 -------~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p 980 (1326)
.+||.|++.|... . ....++.++|+.+||.... ++.+ ..|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~lgq~~-----~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVKLGQPA-----TTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSBTTCCS-----TTCCHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhhccCCc-----cCCCHHHHHHHHHHHHHhhCC
Confidence 3678888876431 1 1223567899999997532 2332 369999999999999999875
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe-----cCcEEEEEcCC
Q 046656 981 ---SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1047 (1326)
Q Consensus 981 ---~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gg~~~~~G~~ 1047 (1326)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|+|++|. +||++++.|+.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999888999999999975 456799999993 47999999986
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.8e-41 Score=394.35 Aligned_cols=214 Identities=26% Similarity=0.377 Sum_probs=190.6
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ +..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 377888888763 3579999999999999999999999999999999999987 4599999999987
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 889 KQE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
... ..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.++|.++.++.+. .||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHH
Confidence 532 33567999999999999999999999987654 34566677789999999999999888764 5999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||+|||||+.+|+|||||||||+||+..+..+++.|+++.++ |.|||++|||++ ++..++||+++|++ |+++..|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 217 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeC
Confidence 9999999999999999999999999999999999999999755 999999999986 68889999999985 79999998
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 218 ~ 218 (381)
T 3rlf_A 218 P 218 (381)
T ss_dssp H
T ss_pred H
Confidence 6
No 13
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.9e-41 Score=382.68 Aligned_cols=215 Identities=25% Similarity=0.376 Sum_probs=186.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++..+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 478999998874 12459999999999999999999999999999999999887 4699999999987
Q ss_pred Cc-----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 889 KQ-----ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 889 ~~-----~~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
.. ..+++.+||++|++. .+..+||+||+.|+.... ..+.++.+++++++++.++|.++.++.++ .|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cC
Confidence 31 124567999999863 445789999999986542 34556667789999999999998888764 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.+.||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999997 56778999999985 799
Q ss_pred EEEcCC
Q 046656 1042 IYVGPL 1047 (1326)
Q Consensus 1042 ~~~G~~ 1047 (1326)
++.|+.
T Consensus 223 ~~~g~~ 228 (275)
T 3gfo_A 223 ILQGNP 228 (275)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999986
No 14
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.9e-41 Score=393.29 Aligned_cols=214 Identities=27% Similarity=0.409 Sum_probs=187.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 377889888763 3579999999999999999999999999999999999987 4599999999876
Q ss_pred ----Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 889 ----KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 889 ----~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.++ .||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPH-----ELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChh-----hCC
Confidence 22 234577999999999999999999999975433 23445566789999999999999988864 599
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
|||||||+|||||+.+|++|||||||||||+..+..+++.|+++. +.|.|||++|||++ ++..++||+++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999888765 45999999999986 67889999999985 7999
Q ss_pred EEcCC
Q 046656 1043 YVGPL 1047 (1326)
Q Consensus 1043 ~~G~~ 1047 (1326)
..|+.
T Consensus 219 ~~g~~ 223 (359)
T 3fvq_A 219 QTASP 223 (359)
T ss_dssp EEECH
T ss_pred EEeCH
Confidence 99986
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4e-41 Score=370.51 Aligned_cols=212 Identities=23% Similarity=0.277 Sum_probs=183.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 77889887763 2569999999999999999999999999999999999887 45899999998864
Q ss_pred ccc------cc-ceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 890 QET------FT-RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 890 ~~~------~~-~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
... ++ +.+||++|++.+++.+||+||+.++...+ ..+....++.++++++.++|.+..++.++ .|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 141 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPY-----EL 141 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GS
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hC
Confidence 321 22 56999999999999999999999876443 23344445678999999999988887764 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
|||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+ +.||++++|++ |+++
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~-G~i~ 218 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKD-GKVV 218 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 34 78999999986 7999
Q ss_pred EEcCC
Q 046656 1043 YVGPL 1047 (1326)
Q Consensus 1043 ~~G~~ 1047 (1326)
+.|+.
T Consensus 219 ~~g~~ 223 (224)
T 2pcj_A 219 GEITR 223 (224)
T ss_dssp EEEEC
T ss_pred EEeee
Confidence 98863
No 16
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5.2e-41 Score=376.99 Aligned_cols=214 Identities=27% Similarity=0.346 Sum_probs=184.9
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 378999988763 3569999999999999999999999999999999999887 4599999999876
Q ss_pred C--c---ccccceEEEeecCCCCCCCCCHHHHHHHHH-HhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 889 K--Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSA-WLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 889 ~--~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
. . ..+++.+||++|++.+++.+||+||+.|+. ... ..+..+.+++++++++.++|.+..++.++ .|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hC
Confidence 3 1 123567999999999999999999999864 222 23344455678999999999988887764 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999986 56678999999986 7999
Q ss_pred EEcCC
Q 046656 1043 YVGPL 1047 (1326)
Q Consensus 1043 ~~G~~ 1047 (1326)
+.|+.
T Consensus 239 ~~g~~ 243 (263)
T 2olj_A 239 EEGKP 243 (263)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98875
No 17
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-41 Score=377.05 Aligned_cols=214 Identities=21% Similarity=0.257 Sum_probs=184.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 378899988763 3569999999999999999999999999999999999887 4599999999876
Q ss_pred Cc----------------ccccceEEEeecCCCCCCCCCHHHHHHHHH-HhhccCCCCHHHHHHHHHHHHHHcCCccc-c
Q 046656 889 KQ----------------ETFTRISGYCEQNDIHSPLVTVYESLLYSA-WLRLRTEVDSETRKMFIEEIMELVELKPL-R 950 (1326)
Q Consensus 889 ~~----------------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~ 950 (1326)
.. ..+++.+||++|++.+++.+||+||+.|+. ..+ ..+..+.+++++++++.++|.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 41 123467999999999999999999999864 222 23344455678999999999988 7
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhc
Q 046656 951 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFD 1030 (1326)
Q Consensus 951 ~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1030 (1326)
++.++ .|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||
T Consensus 148 ~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d 221 (262)
T 1b0u_A 148 GKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 221 (262)
T ss_dssp TSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred cCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCC
Confidence 87764 59999999999999999999999999999999999999999999999877999999999986 5667899
Q ss_pred eeeEEecCcEEEEEcCC
Q 046656 1031 ELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1031 ~v~~l~~gg~~~~~G~~ 1047 (1326)
++++|++ |+++..|+.
T Consensus 222 ~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 222 HVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEEET-TEEEEEECH
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999986 799998875
No 18
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.2e-41 Score=391.36 Aligned_cols=213 Identities=22% Similarity=0.359 Sum_probs=182.4
Q ss_pred cccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccC----CCCCc-cceEEEEc
Q 046656 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM----NEFVP-QRTAAYIS 204 (1326)
Q Consensus 130 ~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~----~~~~~-~~~~~yv~ 204 (1326)
++++++.+++|+|||+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++ ....+ ++.+|||+
T Consensus 10 ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vf 86 (359)
T 3fvq_A 10 LSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLV 86 (359)
T ss_dssp EEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEEC
T ss_pred EEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEe
Confidence 334455677999999999999999999999999999999999999998 99999999987 22222 46799999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|+..++|.+||+||+.|+.+.++... .+....++++++.+||++..
T Consensus 87 Q~~~l~p~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~ 132 (359)
T 3fvq_A 87 QEGVLFPHLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELA 132 (359)
T ss_dssp TTCCCCTTSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGT
T ss_pred CCCcCCCCCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHh
Confidence 99999999999999999876543211 01123467789999999877
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
| +.+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+. .+++++.++|+..++..+|
T Consensus 133 ~-----r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~-~g~tvi~vTHd~~ea~~~a 206 (359)
T 3fvq_A 133 G-----RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA-NGKSAVFVSHDREEALQYA 206 (359)
T ss_dssp T-----SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHHHHC
T ss_pred c-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHC
Confidence 6 455679999999999999999999999999999999999999999988887554 3567777999999999999
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
|+|++|++|+++..|+++++.
T Consensus 207 Dri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 207 DRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999999885
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.1e-40 Score=386.72 Aligned_cols=207 Identities=22% Similarity=0.323 Sum_probs=181.2
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc------cceEEEEccCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP------QRTAAYISQHDVH 209 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 209 (1326)
..++|+|||+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 457999999999999999999999999999999999999998 9999999999876532 3579999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.|+.+..+... .+....++++|+.+||++..+
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~---- 158 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHD---- 158 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------------------------------HHHHHHHHHHHHHHTCGGGTT----
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhc----
Confidence 999999999999876543210 112234677899999988766
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+.+..|||||||||+|||||+.+|++|||||||||||+.++.++++.|+++.+.. +.+|+.++|+..++.++||+|++
T Consensus 159 -~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 159 -SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp -CCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred -CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 4556799999999999999999999999999999999999999999999986543 56677789999999999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999884
No 20
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-40 Score=373.15 Aligned_cols=214 Identities=24% Similarity=0.320 Sum_probs=185.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 478899988763 3569999999999999999999999999999999999887 4599999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 889 KQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
.. ...++.+||++|++.+++.+||+||+.|..... ..+..+.++.++++++.++|.+..++.++ .|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHH
Confidence 43 224567999999999999999999999865433 22334445678999999999988887764 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999976 46667999999986 79999887
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.2e-40 Score=388.97 Aligned_cols=212 Identities=24% Similarity=0.362 Sum_probs=184.6
Q ss_pred ccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCC
Q 046656 131 TTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVH 209 (1326)
Q Consensus 131 ~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~ 209 (1326)
+++++..++|+|||+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|+..+
T Consensus 10 ~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l 86 (381)
T 3rlf_A 10 TKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYAL 86 (381)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCC
T ss_pred EEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcC
Confidence 34445677999999999999999999999999999999999999998 9999999999876544 3679999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
+|.+||+||+.|+.+..+... .+....++++++.+||++..+
T Consensus 87 ~p~ltV~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~---- 128 (381)
T 3rlf_A 87 YPHLSVAENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLD---- 128 (381)
T ss_dssp CTTSCHHHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTT----
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhc----
Confidence 999999999999876543210 112234678899999988766
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+.+..|||||||||+|||||+.+|++||||||||+||+..+.++.+.|+++.+.. +++++.++|+..++..+||+|++
T Consensus 129 -r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~~aDri~v 206 (381)
T 3rlf_A 129 -RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVV 206 (381)
T ss_dssp -CCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHHHHHHHCSEEEE
T ss_pred -CChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEE
Confidence 4566799999999999999999999999999999999999999999999986543 56667789999999999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|+++..|+++++.
T Consensus 207 l~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 207 LDAGRVAQVGKPLELY 222 (381)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEEeCHHHHH
Confidence 9999999999999884
No 22
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=8.5e-41 Score=375.70 Aligned_cols=217 Identities=25% Similarity=0.276 Sum_probs=184.6
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 478899988763 3569999999999999999999999999999999999887 4599999999886
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHh-hccC---------CCCHHHHHHHHHHHHHHcCCcccccccc
Q 046656 889 KQE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWL-RLRT---------EVDSETRKMFIEEIMELVELKPLRQSLV 954 (1326)
Q Consensus 889 ~~~----~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~l-r~~~---------~~~~~~~~~~v~~~l~~l~l~~~~~~~v 954 (1326)
... ..++.+||++|++.+++.+||+||+.++... +... .....+.++.++++++.++|.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 432 1345699999999888999999999986532 1110 0122334567899999999998888876
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeE
Q 046656 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFL 1034 (1326)
Q Consensus 955 g~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1034 (1326)
+ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++
T Consensus 152 ~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 4 59999999999999999999999999999999999999999999999877999999999987 56678999999
Q ss_pred EecCcEEEEEcCC
Q 046656 1035 MKRGGQEIYVGPL 1047 (1326)
Q Consensus 1035 l~~gg~~~~~G~~ 1047 (1326)
|++ |++++.|+.
T Consensus 226 l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 226 MFN-GQIIAEGRG 237 (257)
T ss_dssp EET-TEEEEEEES
T ss_pred EEC-CEEEEEeCH
Confidence 985 799998876
No 23
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.1e-40 Score=385.01 Aligned_cols=215 Identities=23% Similarity=0.364 Sum_probs=188.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ +++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 588899987762 12358999999999999999999999999999999999987 4699999999886
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 889 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
.. ...++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.++ .||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHH
Confidence 43 234577999999999999999999999976543 23455566789999999999999888764 5999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998754 999999999986 67788999999985 79999998
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 230 ~ 230 (355)
T 1z47_A 230 P 230 (355)
T ss_dssp H
T ss_pred H
Confidence 5
No 24
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.2e-39 Score=413.24 Aligned_cols=195 Identities=28% Similarity=0.352 Sum_probs=149.2
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhc-CC---------CCCC---eeEE------EEEEcCccCCccc-----
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GR---------KTGG---YISG------NITISGYPKKQET----- 892 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g~---------~~~~---~~~G------~i~i~g~~~~~~~----- 892 (1326)
.|+|||++|++||++||+|+||||||||+++|. |. ..++ ...| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999964 21 0111 2344 5889987753110
Q ss_pred -----------------ccceEEEeecCCCCC----------------------C-------------------------
Q 046656 893 -----------------FTRISGYCEQNDIHS----------------------P------------------------- 908 (1326)
Q Consensus 893 -----------------~~~~~gyv~Q~~~~~----------------------~------------------------- 908 (1326)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 013357777743221 0
Q ss_pred -------CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 046656 909 -------LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANP 980 (1326)
Q Consensus 909 -------~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p 980 (1326)
.+|+.|++.|... . .. ...+.++|+.++|.. ..++.++ .|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCchh-----hCCHHHHHHHHHHHHHhcCC
Confidence 3578888776321 1 11 223578999999987 5566553 59999999999999999875
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe-----cCcEEEEEcCC
Q 046656 981 ---SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1047 (1326)
Q Consensus 981 ---~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gg~~~~~G~~ 1047 (1326)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|+.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 446899999995 46899999985
No 25
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.7e-40 Score=385.60 Aligned_cols=213 Identities=26% Similarity=0.375 Sum_probs=187.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67888887662 3469999999999999999999999999999999999987 45999999998864
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 QE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.. ..++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.++ .|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHH
Confidence 32 23567999999999999999999999986543 23455556789999999999998888764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998754 999999999986 67788999999985 799999985
No 26
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-40 Score=385.97 Aligned_cols=213 Identities=26% Similarity=0.341 Sum_probs=185.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 67888887763 3569999999999999999999999999999999999987 45999999998874
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 QE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.. ..++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.++ .|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 32 23567999999999999999999999975432 22334445679999999999998888764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 999999999986 67788999999985 799999986
No 27
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.2e-40 Score=386.26 Aligned_cols=213 Identities=26% Similarity=0.339 Sum_probs=187.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 67888887763 3569999999999999999999999999999999999987 46999999998753
Q ss_pred c-------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 890 Q-------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 890 ~-------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
. ...++.+|||+|+..+++.+||+||+.|+...+ ..+..+.+++++++++.++|.++.++.++ .|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----EL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcc-----cC
Confidence 2 123567999999999999999999999986543 23455556789999999999998888764 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999998754 999999999986 67788999999985 799
Q ss_pred EEEcCC
Q 046656 1042 IYVGPL 1047 (1326)
Q Consensus 1042 ~~~G~~ 1047 (1326)
+..|+.
T Consensus 219 ~~~g~~ 224 (372)
T 1g29_1 219 QQVGSP 224 (372)
T ss_dssp EEEECH
T ss_pred EEeCCH
Confidence 999985
No 28
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-40 Score=367.66 Aligned_cols=213 Identities=24% Similarity=0.334 Sum_probs=181.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 378899988763 3569999999999999999999999999999999999887 4599999999886
Q ss_pred Cccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCC
Q 046656 889 KQET----FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE-LKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 889 ~~~~----~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~vg~~~~~~LS 963 (1326)
.... .++.+||++|++.+++.+||+||+.++.... ...++.++.++++++.++ |.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCC
Confidence 4321 2345999999999999999999999864211 122334456888999995 887777765 3699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999975 57788999999985 79999
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 220 ~g~~ 223 (240)
T 1ji0_A 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred EcCH
Confidence 8874
No 29
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.1e-40 Score=373.34 Aligned_cols=213 Identities=23% Similarity=0.306 Sum_probs=184.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 478899988763 3579999999999999999999999999999999999887 4589999999987
Q ss_pred Ccc---cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 889 KQE---TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 889 ~~~---~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
... ..++.+||++|+..+++.+||+||+.++.... .....++.++++++.+++.++.++.++ .||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 532 34567899999998888899999999875432 112234568999999999998888764 59999
Q ss_pred HHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 966 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 966 qrqrl~ia~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
|||||+|||||+. +|++|||||||+|||+.++..+++.|+++.++ |+|||++|||++ ++...||++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 56778999999985
Q ss_pred cEEEEEcCCC
Q 046656 1039 GQEIYVGPLG 1048 (1326)
Q Consensus 1039 g~~~~~G~~~ 1048 (1326)
|++++.|+..
T Consensus 224 G~i~~~g~~~ 233 (266)
T 4g1u_C 224 GKLVACGTPE 233 (266)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEEcCHH
Confidence 7999999863
No 30
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.7e-40 Score=385.67 Aligned_cols=213 Identities=26% Similarity=0.373 Sum_probs=186.3
Q ss_pred EEEecccceeccchhhhccccccCceE--eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~--vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
++++|+++.++ ++. +|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 67888887763 234 9999999999999999999999999999999999987 459999999987
Q ss_pred CCc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046656 888 KKQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG 961 (1326)
Q Consensus 888 ~~~------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 961 (1326)
+.. ...++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.++ .
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----E 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----G
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 532 234678999999999999999999999975432 23455566789999999999999888764 5
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
|||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 999999999986 67788999999985 79
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
++..|+.
T Consensus 219 i~~~g~~ 225 (353)
T 1oxx_K 219 LVQVGKP 225 (353)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999985
No 31
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4e-40 Score=385.52 Aligned_cols=213 Identities=23% Similarity=0.349 Sum_probs=180.8
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 78899988763 3569999999999999999999999999999999999987 45999999998864
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 QE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.. ..++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.++ .|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHH
Confidence 32 23567999999999999999999999975332 23455566789999999999998888764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|+|++|||++ ++..++|++++|++ |+++..|+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998755 999999999986 67788999999985 799999985
No 32
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=8.6e-40 Score=380.90 Aligned_cols=211 Identities=25% Similarity=0.354 Sum_probs=181.5
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCC
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHI 210 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~ 210 (1326)
++++++++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..++
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 87 (359)
T 2yyz_A 11 KYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALY 87 (359)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCC
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccC
Confidence 3344567999999999999999999999999999999999999998 9999999999865443 46799999999999
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+++||+||+.|+.+.++.. + .+....++++++.+||++..+.
T Consensus 88 ~~ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r---- 129 (359)
T 2yyz_A 88 PHMTVFENIAFPLRARRIS----------K------------------------DEVEKRVVEIARKLLIDNLLDR---- 129 (359)
T ss_dssp TTSCHHHHHHGGGSSSCSH----------H------------------------HHTTHHHHHHHHHTTCGGGTTS----
T ss_pred CCCCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcC----
Confidence 9999999999986543210 0 0112346778999999887664
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
.+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|
T Consensus 130 -~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~~~~~adri~vl 207 (359)
T 2yyz_A 130 -KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL-GITSVYVTHDQAEAMTMASRIAVF 207 (359)
T ss_dssp -CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEE
T ss_pred -ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 456799999999999999999999999999999999999999999999986543 456666899999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 046656 371 SDGQIVYQGPCELVL 385 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~ 385 (1326)
++|+++..|+++++.
T Consensus 208 ~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 208 NQGKLVQYGTPDEVY 222 (359)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999999874
No 33
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=8.9e-40 Score=379.75 Aligned_cols=208 Identities=25% Similarity=0.374 Sum_probs=180.2
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 213 (1326)
+++++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 102 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHM 102 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTS
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCC
Confidence 4456999999999999999999999999999999999999998 9999999998865433 46799999999999999
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
||+||+.|+.+..+... .+....++++++.+||++..+ +.+
T Consensus 103 tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~-----r~~ 143 (355)
T 1z47_A 103 TVYDNVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYAN-----RFP 143 (355)
T ss_dssp CHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTT-----SCG
T ss_pred CHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhc-----CCc
Confidence 99999999865432110 011234677899999988776 455
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..+||+|++|++|
T Consensus 144 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~G 222 (355)
T 1z47_A 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM-GVTSVFVTHDQEEALEVADRVLVLHEG 222 (355)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999999986543 456666899999999999999999999
Q ss_pred eEEEEcChhhHH
Q 046656 374 QIVYQGPCELVL 385 (1326)
Q Consensus 374 ~iv~~G~~~~~~ 385 (1326)
+++..|+++++.
T Consensus 223 ~i~~~g~~~~l~ 234 (355)
T 1z47_A 223 NVEQFGTPEEVY 234 (355)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEcCHHHHH
Confidence 999999999874
No 34
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1e-39 Score=380.68 Aligned_cols=212 Identities=26% Similarity=0.400 Sum_probs=182.1
Q ss_pred ccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCC
Q 046656 131 TTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVH 209 (1326)
Q Consensus 131 ~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~ 209 (1326)
+++++++++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|+..+
T Consensus 10 ~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l 86 (362)
T 2it1_A 10 VKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWAL 86 (362)
T ss_dssp EEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCC
T ss_pred EEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCccc
Confidence 33445567999999999999999999999999999999999999998 9999999999865443 4679999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++++||+||+.|+.+.++... .+....++++++.+||++..+
T Consensus 87 ~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~---- 128 (362)
T 2it1_A 87 YPHMTVYKNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLN---- 128 (362)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTT----
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhh----
Confidence 999999999999865432110 011234677899999988766
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+.+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++
T Consensus 129 -r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~v 206 (362)
T 2it1_A 129 -RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL-GITTVYVTHDQAEALAMADRIAV 206 (362)
T ss_dssp -CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred -CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEE
Confidence 4556799999999999999999999999999999999999999999999986543 45566689999999999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|+++..|+++++.
T Consensus 207 l~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 207 IREGEILQVGTPDEVY 222 (362)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999874
No 35
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.6e-39 Score=363.24 Aligned_cols=207 Identities=20% Similarity=0.321 Sum_probs=175.4
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCC--CCC---ccceEEEEccCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN--EFV---PQRTAAYISQHDVH 209 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~ 209 (1326)
+++++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.+
T Consensus 35 ~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l 111 (263)
T 2olj_A 35 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL 111 (263)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCC
T ss_pred CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcC
Confidence 3456999999999999999999999999999999999999997 999999998874 111 13569999999989
Q ss_pred CCCCCHHHHHHhhh-hhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 210 IGEMTVRETLAFSA-RCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
++.+||+||+.|+. +..+.. + .+....++.+++.+||++..+.
T Consensus 112 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~-- 155 (263)
T 2olj_A 112 FPHMTVLNNITLAPMKVRKWP----------R------------------------EKAEAKAMELLDKVGLKDKAHA-- 155 (263)
T ss_dssp CTTSCHHHHHHHHHHHTSCCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTS--
T ss_pred CCCCCHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCchHhcC--
Confidence 99999999999964 322210 0 0012235678999999877664
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
.+..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+. +++|+.++|+..++..+||+|+
T Consensus 156 ---~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~ 230 (263)
T 2olj_A 156 ---YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTHEMGFAREVGDRVL 230 (263)
T ss_dssp ---CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEE
T ss_pred ---ChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEE
Confidence 45579999999999999999999999999999999999999999999998653 5667778999999999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++++.|+++++.
T Consensus 231 ~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 231 FMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999998874
No 36
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=4.5e-39 Score=409.37 Aligned_cols=195 Identities=25% Similarity=0.352 Sum_probs=144.7
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhh-hcCCC-------CC----------------CeeEE-------EEEEcC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDV-LAGRK-------TG----------------GYISG-------NITISG 885 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~-L~g~~-------~~----------------~~~~G-------~i~i~g 885 (1326)
+|+|||++|++||++||+|+||||||||++. |+|.. .+ ....| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999997 76431 11 12467 789998
Q ss_pred ccCCcccc----------------------cceEEEeec----------------------CCCCCC-------------
Q 046656 886 YPKKQETF----------------------TRISGYCEQ----------------------NDIHSP------------- 908 (1326)
Q Consensus 886 ~~~~~~~~----------------------~~~~gyv~Q----------------------~~~~~~------------- 908 (1326)
.++..... .|..||.++ +..+.+
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 77532110 011122221 111111
Q ss_pred -------------------CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHH
Q 046656 909 -------------------LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 909 -------------------~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrq 968 (1326)
.+|+.|++.|.. .. ...+++.++|+.++|... .++.+ ..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~~---~~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------DE---SAIFRALDTLREVGLGYLRLGQPA-----TELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------TS---HHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------cc---hHHHHHHHHHHHcCCCcccccCCc-----ccCCHHHHH
Confidence 234555544321 11 122357899999999873 35554 369999999
Q ss_pred HHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe-----cCcE
Q 046656 969 RLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQ 1040 (1326)
Q Consensus 969 rl~ia~aL~~~---p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gg~ 1040 (1326)
||+||++|+.+ |+||||||||+|||+.+...+++.|++++++|.|||+++|+++ .+ +.+|++++|. ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 6999999999999999999999999999888999999999975 34 7899999995 4689
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|+.
T Consensus 816 Iv~~g~~ 822 (842)
T 2vf7_A 816 LVAQGTP 822 (842)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999975
No 37
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.3e-39 Score=367.61 Aligned_cols=207 Identities=25% Similarity=0.324 Sum_probs=175.2
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC-----CccceEEEEccCC-CCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF-----VPQRTAAYISQHD-VHI 210 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~ 210 (1326)
..+|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999997 99999999987421 1235799999985 345
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.|+....+... .+....++++++.+||++..+.
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~---- 139 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDK---- 139 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTS----
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcC----
Confidence 58999999999876533210 1112346778999999887764
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
.+..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+.. +++|++++|+..++.++||+|++|
T Consensus 140 -~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 140 -PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp -BGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEE
T ss_pred -CcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 455799999999999999999999999999999999999999999999986333 566777899999999999999999
Q ss_pred cCCeEEEEcChhhHHH
Q 046656 371 SDGQIVYQGPCELVLD 386 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~~ 386 (1326)
++|+++++|+++++..
T Consensus 218 ~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 218 KEGRVILQGNPKEVFA 233 (275)
T ss_dssp ETTEEEEEECHHHHTH
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998753
No 38
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.8e-39 Score=365.77 Aligned_cols=206 Identities=28% Similarity=0.348 Sum_probs=178.3
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIG 211 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 211 (1326)
+.+++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (266)
T 4g1u_C 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAF 98 (266)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCS
T ss_pred CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCC
Confidence 4467999999999999999999999999999999999999998 9999999999876543 356999999988888
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
.+||+||+.|+....... +....++++++.+||.+..+..
T Consensus 99 ~~tv~e~l~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~---- 138 (266)
T 4g1u_C 99 PFSVSEVIQMGRAPYGGS------------------------------------QDRQALQQVMAQTDCLALAQRD---- 138 (266)
T ss_dssp CCBHHHHHHGGGTTSCST------------------------------------THHHHHHHHHHHTTCSTTTTSB----
T ss_pred CCCHHHHHHhhhhhcCcH------------------------------------HHHHHHHHHHHHcCChhHhcCC----
Confidence 999999999975432100 0112356789999998877644
Q ss_pred cccCCChhhhHHHHHHHHhhc------CCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 292 MVRGISGGQKKRLTTGEMMVG------PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~------~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
+..|||||||||+|||||+. +|++|||||||+|||+.++.++++.|+++.+ .++.+|+.++|+..++..+||
T Consensus 139 -~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~-~~~~tvi~vtHdl~~~~~~~d 216 (266)
T 4g1u_C 139 -YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYAD 216 (266)
T ss_dssp -GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH-HSSEEEEEECSCHHHHHHHCS
T ss_pred -cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-cCCCEEEEEEcCHHHHHHhCC
Confidence 45799999999999999999 9999999999999999999999999999865 356677889999999999999
Q ss_pred eEEEecCCeEEEEcChhhHH
Q 046656 366 DIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++|+++++|+++++.
T Consensus 217 ~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 217 RIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEEEETTEEEEEECHHHHC
T ss_pred EEEEEECCEEEEEcCHHHHh
Confidence 99999999999999998873
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1e-39 Score=379.19 Aligned_cols=209 Identities=22% Similarity=0.285 Sum_probs=181.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++ +|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 46777877652 34 9999999999999999999999999999999999987 46999999998874
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
. ...++.+|||+|+..+++.+||+||+.|+...+.. +.. ++++++++.++|.++.++.++ .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 3 23456799999999999999999999997654321 112 568999999999999888764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998754 999999999986 67788999999985 789999975
No 40
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.2e-39 Score=380.19 Aligned_cols=211 Identities=26% Similarity=0.365 Sum_probs=180.8
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC------CCc-cceEEEEc
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE------FVP-QRTAAYIS 204 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~~~-~~~~~yv~ 204 (1326)
++++.+++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++.. ..+ ++.+|||+
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~ 87 (372)
T 1g29_1 11 KVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVF 87 (372)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEEC
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEe
Confidence 3344567999999999999999999999999999999999999998 9999999988754 322 46799999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|+..+++++||+||+.|+.+..+... .+....++++++.+||++..
T Consensus 88 Q~~~l~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~ 133 (372)
T 1g29_1 88 QSYALYPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELL 133 (372)
T ss_dssp SCCCCCTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGT
T ss_pred CCCccCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHh
Confidence 99999999999999999865432210 01123467789999998877
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
+. .+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..+|
T Consensus 134 ~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~a 207 (372)
T 1g29_1 134 NR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMG 207 (372)
T ss_dssp TC-----CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHC
T ss_pred cC-----CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHHhC
Confidence 64 456799999999999999999999999999999999999999999999986543 456666899999999999
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
|+|++|++|+++..|+++++.
T Consensus 208 dri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 208 DRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999874
No 41
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.7e-39 Score=380.14 Aligned_cols=209 Identities=24% Similarity=0.357 Sum_probs=174.0
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~ 212 (1326)
++.+++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..++++
T Consensus 21 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 97 (372)
T 1v43_A 21 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPH 97 (372)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------C
T ss_pred ECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCC
Confidence 34467999999999999999999999999999999999999998 9999999999865443 4679999999999999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.|+.+.++.. + .+....++++++.+||++..+ +.
T Consensus 98 ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~-----r~ 138 (372)
T 1v43_A 98 MTVYENIAFPLKIKKFP----------K------------------------DEIDKRVRWAAELLQIEELLN-----RY 138 (372)
T ss_dssp CCHHHHHHTTCC--CCC----------H------------------------HHHHHHHHHHHHHTTCGGGTT-----SC
T ss_pred CCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhc-----CC
Confidence 99999999976543211 0 011234677899999988776 45
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++
T Consensus 139 ~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~ 217 (372)
T 1v43_A 139 PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNR 217 (372)
T ss_dssp TTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 56799999999999999999999999999999999999999999999986543 45666689999999999999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|+++..|+++++.
T Consensus 218 G~i~~~g~~~~l~ 230 (372)
T 1v43_A 218 GQLLQIGSPTEVY 230 (372)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHH
Confidence 9999999999874
No 42
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.6e-39 Score=377.65 Aligned_cols=209 Identities=24% Similarity=0.345 Sum_probs=180.2
Q ss_pred cccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCC
Q 046656 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDV 208 (1326)
Q Consensus 130 ~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~ 208 (1326)
++++++.+ +|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..
T Consensus 7 l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~ 82 (348)
T 3d31_A 7 LSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYS 82 (348)
T ss_dssp EEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCC
T ss_pred EEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcc
Confidence 33444555 999999999999999999999999999999999999998 9999999998865433 467999999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++++||+||+.|+.+..+... . ..++++++.+||++..|.
T Consensus 83 l~~~ltv~enl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~-- 123 (348)
T 3d31_A 83 LFPHMNVKKNLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDR-- 123 (348)
T ss_dssp CCTTSCHHHHHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTS--
T ss_pred cCCCCCHHHHHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcC--
Confidence 9999999999999765432110 0 235678999999887764
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
.+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|+
T Consensus 124 ---~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~~~~~~adri~ 199 (348)
T 3d31_A 124 ---NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIA 199 (348)
T ss_dssp ---CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEE
T ss_pred ---ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 456799999999999999999999999999999999999999999999986543 5566678999999999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|+++..|+++++.
T Consensus 200 vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 200 VVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EESSSCEEEEECHHHHH
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999999884
No 43
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.2e-39 Score=356.58 Aligned_cols=203 Identities=24% Similarity=0.340 Sum_probs=171.2
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEEccC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYISQH 206 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 206 (1326)
++.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|+
T Consensus 14 y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 90 (224)
T 2pcj_A 14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQF 90 (224)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSS
T ss_pred ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecC
Confidence 33457999999999999999999999999999999999999987 9999999998865432 1569999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 207 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
+.+++.+||+||+.++....+.. + .+....++++++.+||++..+.
T Consensus 91 ~~l~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~ 136 (224)
T 2pcj_A 91 HYLIPELTALENVIVPMLKMGKP----------K------------------------KEAKERGEYLLSELGLGDKLSR 136 (224)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTC
T ss_pred cccCCCCCHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhC
Confidence 99999999999999976543210 0 0012235678999999887664
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +.+|+.++|+...+ ++||+
T Consensus 137 -----~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~-~~~d~ 208 (224)
T 2pcj_A 137 -----KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG--GTSIVMVTHERELA-ELTHR 208 (224)
T ss_dssp -----CGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHH-TTSSE
T ss_pred -----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHH-HhCCE
Confidence 45579999999999999999999999999999999999999999999998653 55666678887776 89999
Q ss_pred EEEecCCeEEEEcCh
Q 046656 367 IILLSDGQIVYQGPC 381 (1326)
Q Consensus 367 vilL~~G~iv~~G~~ 381 (1326)
|++|++|+++++|++
T Consensus 209 v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 209 TLEMKDGKVVGEITR 223 (224)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEEeee
Confidence 999999999999864
No 44
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.1e-39 Score=362.91 Aligned_cols=216 Identities=26% Similarity=0.279 Sum_probs=174.8
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCC--CCCCeeEEEEEEcCcc
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYISGNITISGYP 887 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~--~~~~~~~G~i~i~g~~ 887 (1326)
++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|. .+ +.+|+|.++|.+
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~ 68 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGEN 68 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEE
Confidence 67888887763 35699999999999999999999999999999999997 43 679999999988
Q ss_pred CCccc---c-cceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCC-cccccccccCCCCCC-
Q 046656 888 KKQET---F-TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL-KPLRQSLVGLPGESG- 961 (1326)
Q Consensus 888 ~~~~~---~-~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l-~~~~~~~vg~~~~~~- 961 (1326)
+.... . ++.++|++|++.+++.+||+|++.+.............+..+.++++++.++| .++.++.++ .
T Consensus 69 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~ 143 (250)
T 2d2e_A 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EG 143 (250)
T ss_dssp CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC
T ss_pred CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cC
Confidence 64321 1 23489999999999999999999886532111112233445668899999999 577777653 4
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHH-hceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEA-FDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~gg~ 1040 (1326)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|++ |+
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~ 221 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GR 221 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998767999999999986 35455 599999985 79
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|+.
T Consensus 222 i~~~g~~ 228 (250)
T 2d2e_A 222 VVATGGP 228 (250)
T ss_dssp EEEEESH
T ss_pred EEEEeCH
Confidence 9999875
No 45
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-39 Score=364.66 Aligned_cols=207 Identities=23% Similarity=0.297 Sum_probs=175.1
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC----------CC------ccc
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE----------FV------PQR 198 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------~~------~~~ 198 (1326)
+.+++|+|||+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 93 (262)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHH
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhc
Confidence 3456999999999999999999999999999999999999987 9999999988751 11 135
Q ss_pred eEEEEccCCCCCCCCCHHHHHHhhh-hhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 046656 199 TAAYISQHDVHIGEMTVRETLAFSA-RCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKV 277 (1326)
Q Consensus 199 ~~~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (1326)
.++||+|++.+++.+||+||+.|+. ...+.. + .+....++++++.
T Consensus 94 ~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~ 139 (262)
T 1b0u_A 94 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K------------------------HDARERALKYLAK 139 (262)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------H------------------------HHHHHHHHHHHHH
T ss_pred ceEEEecCcccCCCCcHHHHHHhhHHHhcCCC----------H------------------------HHHHHHHHHHHHH
Confidence 6999999999999999999999864 322110 0 0012235678999
Q ss_pred cCCccc-ccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC
Q 046656 278 LGLDVC-ADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP 356 (1326)
Q Consensus 278 lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~ 356 (1326)
+||++. .+. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. +++|+.++|+
T Consensus 140 ~~L~~~~~~~-----~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd 212 (262)
T 1b0u_A 140 VGIDERAQGK-----YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHE 212 (262)
T ss_dssp TTCCHHHHTS-----CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEECSC
T ss_pred cCCCchhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCC
Confidence 999876 664 45579999999999999999999999999999999999999999999998653 5566678999
Q ss_pred hhhHHhhCCeEEEecCCeEEEEcChhhHH
Q 046656 357 APETYDLFDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 357 ~~~~~~~~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
..++..+||+|++|++|++++.|+++++.
T Consensus 213 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 213 MGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999998774
No 46
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-39 Score=359.59 Aligned_cols=208 Identities=21% Similarity=0.302 Sum_probs=177.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ + +|+|||++|++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46778877662 1 49999999999 9999999999999999999999887 45899999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
. ...++.+||++|++.+++.+||+||+.|+...+ .....+++++++++.++|.+..++.++ .|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHH
Confidence 3 234567999999999999999999999864321 111224568999999999988887764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998754 999999999976 56788999999986 799998874
No 47
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-39 Score=366.55 Aligned_cols=217 Identities=23% Similarity=0.323 Sum_probs=180.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 67888887763100 001569999999999999999999999999999999999887 46999999998865
Q ss_pred cccccceEEEeecCC-CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCCCCHHH
Q 046656 890 QETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK--PLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 890 ~~~~~~~~gyv~Q~~-~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~vg~~~~~~LSgGq 966 (1326)
...+++.+||++|++ ..++.+||+||+.|+.... .+.++.+++++++++.++|. +..++.++ .|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-----FLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGG-----GSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChh-----hCCHHH
Confidence 333456799999995 4567789999999864322 11112234588999999998 88887764 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+...||++++|++ |++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999767999999999987 46667999999985 78998887
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 4
No 48
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2e-39 Score=378.42 Aligned_cols=210 Identities=21% Similarity=0.272 Sum_probs=179.8
Q ss_pred ccccce--eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC-----CC-ccceEEEEc
Q 046656 133 KKKHLT--ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE-----FV-PQRTAAYIS 204 (1326)
Q Consensus 133 ~~~~~~--iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~-----~~-~~~~~~yv~ 204 (1326)
+++.++ +|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.+|||+
T Consensus 12 ~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~ 88 (353)
T 1oxx_K 12 VFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVF 88 (353)
T ss_dssp EEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEE
T ss_pred EECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEe
Confidence 334455 999999999999999999999999999999999999998 9999999988754 22 246799999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|+..+++++||+||+.|+.+.++... .+....++++++.+||++..
T Consensus 89 Q~~~l~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~ 134 (353)
T 1oxx_K 89 QTWALYPNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVL 134 (353)
T ss_dssp TTSCCCTTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGT
T ss_pred CCCccCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHh
Confidence 99999999999999999865432110 01123467789999998877
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
+. .+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++
T Consensus 135 ~~-----~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~~~~~a 208 (353)
T 1oxx_K 135 NH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIA 208 (353)
T ss_dssp TS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHC
T ss_pred cC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhC
Confidence 64 456799999999999999999999999999999999999999999999986543 456666899999999999
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
|+|++|++|+++..|+++++.
T Consensus 209 dri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 209 DRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999874
No 49
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.4e-39 Score=368.88 Aligned_cols=217 Identities=24% Similarity=0.374 Sum_probs=179.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 21 ~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCC
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 588999988773 3569999999999999999999999999999999999887 4589999999876
Q ss_pred C--c---ccccceEEEeecCCCCC--CCCCHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046656 889 K--Q---ETFTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGES 960 (1326)
Q Consensus 889 ~--~---~~~~~~~gyv~Q~~~~~--~~~Tv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 960 (1326)
. . ..+++.+||++|++.+. +.+||+||+.++...... .....++..++++++++.++|.+..++.++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG----- 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh-----
Confidence 4 2 22456799999987543 356999999885321100 011122334668999999999988888764
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE--EEEecCCcHHHHHHhceeeEEecC
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV--VCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|| |++||+++ ++.+.||++++|++
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~- 238 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD- 238 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET-
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 599999999999999999999999999999999999999999999997669999 99999986 46678999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 239 G~i~~~g~~ 247 (279)
T 2ihy_A 239 GQSIQQGAV 247 (279)
T ss_dssp TEEEEEEEH
T ss_pred CEEEEECCH
Confidence 799998875
No 50
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.3e-39 Score=359.59 Aligned_cols=207 Identities=25% Similarity=0.295 Sum_probs=176.1
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC--ccceEEEEccCCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 213 (1326)
.+++|+|||+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+
T Consensus 27 ~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 456999999999999999999999999999999999999988 999999998875421 235799999999889999
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
||+||+.|+....+.. . .+....++++++.+||++..+.. +
T Consensus 104 tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~-----~ 144 (256)
T 1vpl_A 104 QGIEYLRFVAGFYASS----------S------------------------SEIEEMVERATEIAGLGEKIKDR-----V 144 (256)
T ss_dssp BHHHHHHHHHHHHCCC----------H------------------------HHHHHHHHHHHHHHCCGGGGGSB-----G
T ss_pred cHHHHHHHHHHHcCCC----------h------------------------HHHHHHHHHHHHHCCCchHhcCC-----h
Confidence 9999999865432210 0 00112356789999998877654 4
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. .+++|+.++|+..++..+||+|++|++|
T Consensus 145 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tiiivtHd~~~~~~~~d~v~~l~~G 222 (256)
T 1vpl_A 145 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCDRIALIHNG 222 (256)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEEECCHHHHTTTCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh--CCCEEEEEcCCHHHHHHHCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999999854 3566777899999999999999999999
Q ss_pred eEEEEcChhhHHH
Q 046656 374 QIVYQGPCELVLD 386 (1326)
Q Consensus 374 ~iv~~G~~~~~~~ 386 (1326)
++++.|+++++.+
T Consensus 223 ~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 223 TIVETGTVEELKE 235 (256)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999988754
No 51
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.9e-39 Score=355.60 Aligned_cols=207 Identities=21% Similarity=0.251 Sum_probs=171.0
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEEccCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYISQHDVH 209 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 209 (1326)
+++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 56999999999999999999999999999999999999998 9999999998876543 2359999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc-cccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA-DTLV 288 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~v 288 (1326)
++.+||+||+.++......... .+ .+....++++++.+||.+.. +
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------~~------------------------~~~~~~~~~~l~~~~l~~~~~~--- 140 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------SG------------------------EERRKRALECLKMAELEERFAN--- 140 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------CH------------------------HHHHHHHHHHHHHTTCCGGGTT---
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------CH------------------------HHHHHHHHHHHHHCCCChhhhh---
Confidence 9999999999997654311000 00 01123356778999997643 4
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
+.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.++++.+.. +.+|+.++|+.. ..++||+|+
T Consensus 141 --~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHd~~-~~~~~d~i~ 216 (235)
T 3tif_A 141 --HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED-GKTVVVVTHDIN-VARFGERII 216 (235)
T ss_dssp --CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHH-HHTTSSEEE
T ss_pred --CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEcCCHH-HHHhCCEEE
Confidence 4566799999999999999999999999999999999999999999999986533 455666888886 568999999
Q ss_pred EecCCeEEEEcChhhH
Q 046656 369 LLSDGQIVYQGPCELV 384 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~ 384 (1326)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999988764
No 52
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=4.9e-38 Score=400.10 Aligned_cols=195 Identities=24% Similarity=0.345 Sum_probs=146.1
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhc-C----CC-----CCC---eeEE------EEEEcCccCCccc-----
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----RK-----TGG---YISG------NITISGYPKKQET----- 892 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g----~~-----~~~---~~~G------~i~i~g~~~~~~~----- 892 (1326)
+|+|||++|++||++||+|+||||||||+++|. | .. .++ ...| .|.+++.++....
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 599999999999999999999999999999963 2 11 111 1123 3666766542100
Q ss_pred -----------------ccceEEEeecCCCCC----------------------C-------------------------
Q 046656 893 -----------------FTRISGYCEQNDIHS----------------------P------------------------- 908 (1326)
Q Consensus 893 -----------------~~~~~gyv~Q~~~~~----------------------~------------------------- 908 (1326)
..+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 013346776643211 1
Q ss_pred -------CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 046656 909 -------LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANP 980 (1326)
Q Consensus 909 -------~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p 980 (1326)
.+||.|++.|... . .. ...+.++|+.++|.. ..++.+ ..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~lgL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------I-AG--VHRYLRTLVDVGLGYVRLGQPA-----PTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------C-HH--HHHHHHHHHHTTGGGSBTTCCG-----GGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------c-hH--HHHHHHHHHHcCCCcccccCcc-----ccCCHHHHHHHHHHHHHHhCC
Confidence 2577777766321 1 11 223578999999976 455554 359999999999999999875
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe-----cCcEEEEEcCC
Q 046656 981 ---SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1047 (1326)
Q Consensus 981 ---~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gg~~~~~G~~ 1047 (1326)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|+.
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 347899999995 47899999985
No 53
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.1e-39 Score=362.02 Aligned_cols=216 Identities=25% Similarity=0.337 Sum_probs=174.8
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVHI 210 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 210 (1326)
+++++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (257)
T 1g6h_A 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 94 (257)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccC
Confidence 3456999999999999999999999999999999999999987 9999999998865432 34699999999889
Q ss_pred CCCCHHHHHHhhhhh--ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 211 GEMTVRETLAFSARC--QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~--~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+.+||+||+.++... .+. + ....+ ..... ...+....++++++.+||++..+..
T Consensus 95 ~~~tv~enl~~~~~~~~~~~---~---~~~~~----~~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~- 150 (257)
T 1g6h_A 95 KEMTVLENLLIGEICPGESP---L---NSLFY----KKWIP-------------KEEEMVEKAFKILEFLKLSHLYDRK- 150 (257)
T ss_dssp GGSBHHHHHHGGGTSTTSCH---H---HHHHH----CSSCC-------------CCHHHHHHHHHHHHHTTCGGGTTSB-
T ss_pred CCCcHHHHHHHHHhhhccCc---c---ccccc----ccccC-------------CHHHHHHHHHHHHHHcCCchhhCCC-
Confidence 999999999987532 110 0 00000 00000 0001123356789999998777654
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
+..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ . +++|+.++|+.+++..+||+|+
T Consensus 151 ----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~ 224 (257)
T 1g6h_A 151 ----AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLY 224 (257)
T ss_dssp ----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEE
T ss_pred ----chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999865 3 5566778999999999999999
Q ss_pred EecCCeEEEEcChhh
Q 046656 369 LLSDGQIVYQGPCEL 383 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~ 383 (1326)
+|++|++++.|++++
T Consensus 225 ~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 225 VMFNGQIIAEGRGEE 239 (257)
T ss_dssp EEETTEEEEEEESHH
T ss_pred EEECCEEEEEeCHHH
Confidence 999999999999888
No 54
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.3e-38 Score=359.60 Aligned_cols=220 Identities=25% Similarity=0.286 Sum_probs=180.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 488999988763 3569999999999999999999999999999999999842226799999999876
Q ss_pred Ccc---cc-cceEEEeecCCCCCCCCCHHHHHHHHHH-hh---ccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 046656 889 KQE---TF-TRISGYCEQNDIHSPLVTVYESLLYSAW-LR---LRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGE 959 (1326)
Q Consensus 889 ~~~---~~-~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~-lr---~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~ 959 (1326)
... .. ++.+||++|++.+++.+||.|++.+... .+ .....+.++.++.++++++.++|. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 431 11 2348999999999999999999987541 21 111223444456789999999996 56666543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHH-hceeeEEecC
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1038 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~g 1038 (1326)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 149999999999999999999999999999999999999999999998767999999999986 34444 899999986
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 241 G~i~~~g~~ 249 (267)
T 2zu0_C 241 GRIVKSGDF 249 (267)
T ss_dssp TEEEEEECT
T ss_pred CEEEEEcCH
Confidence 799999986
No 55
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.7e-39 Score=356.08 Aligned_cols=206 Identities=23% Similarity=0.337 Sum_probs=172.3
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVHI 210 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 210 (1326)
+.+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 93 (240)
T 1ji0_A 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIF 93 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCC
T ss_pred CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccC
Confidence 3456999999999999999999999999999999999999988 9999999998865432 23599999999999
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcC-Cccccccccc
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG-LDVCADTLVG 289 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg 289 (1326)
+.+||+||+.|+.... .... +....++.+++.++ |++..+.
T Consensus 94 ~~ltv~enl~~~~~~~-~~~~----------------------------------~~~~~~~~~l~~~~~l~~~~~~--- 135 (240)
T 1ji0_A 94 PELTVYENLMMGAYNR-KDKE----------------------------------GIKRDLEWIFSLFPRLKERLKQ--- 135 (240)
T ss_dssp TTSBHHHHHHGGGTTC-CCSS----------------------------------HHHHHHHHHHHHCHHHHTTTTS---
T ss_pred CCCcHHHHHHHhhhcC-CCHH----------------------------------HHHHHHHHHHHHcccHhhHhcC---
Confidence 9999999999864211 0000 01122456788884 8765553
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .+++|+.++|+..++.++||+|++
T Consensus 136 --~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~--~g~tvi~vtHd~~~~~~~~d~v~~ 211 (240)
T 1ji0_A 136 --LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYV 211 (240)
T ss_dssp --BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHCSEEEE
T ss_pred --ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEE
Confidence 4567999999999999999999999999999999999999999999999865 355666689999899999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|++++.|+++++.
T Consensus 212 l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 212 LETGQIVLEGKASELL 227 (240)
T ss_dssp EETTEEEEEEEHHHHH
T ss_pred EECCEEEEEcCHHHHh
Confidence 9999999999988764
No 56
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3e-38 Score=353.45 Aligned_cols=206 Identities=23% Similarity=0.355 Sum_probs=174.1
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.+
T Consensus 5 l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~------ 64 (253)
T 2nq2_C 5 LSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIEV------ 64 (253)
T ss_dssp EEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEEE------
T ss_pred EEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEE------
Confidence 778888877630 2469999999999999999999999999999999999887 45899982
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT-EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
++.+||++|++.+++.+||+||+.++....... .......++.++++++.++|.+..++.++ .|||||||
T Consensus 65 ----~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~q 135 (253)
T 2nq2_C 65 ----YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQ 135 (253)
T ss_dssp ----CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHH
T ss_pred ----eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHH
Confidence 356899999998888999999999864321110 01123334568999999999988887764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++ |+ ++.|+.
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 999999999999999999999999999999999999999876 999999999986 56678999999996 57 888875
No 57
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.3e-39 Score=366.53 Aligned_cols=210 Identities=26% Similarity=0.350 Sum_probs=175.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||++.|+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 53 ~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i 118 (306)
T 3nh6_A 53 RIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDI 118 (306)
T ss_dssp CEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 689999998874 22469999999999999999999999999999999999887 4699999999987
Q ss_pred Ccc---cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 046656 889 KQE---TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-------QSLVGLPG 958 (1326)
Q Consensus 889 ~~~---~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~~ 958 (1326)
... .+++.+|||+|++.+++ .||+||+.|+.. ... .+.++++++.+++.+.. ++.+|..
T Consensus 119 ~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~-----~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~- 187 (306)
T 3nh6_A 119 SQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRV-----TAG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGER- 187 (306)
T ss_dssp TSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTST-----TCC----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTT-
T ss_pred ccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcc-----cCC----HHHHHHHHHHhCcHHHHHhccchhhhHhcCC-
Confidence 542 35678999999998875 599999998632 111 23366777777776543 3334433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|||++||+++ .+ ..+|+|++|++
T Consensus 188 g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~-~~aD~i~vl~~- 263 (306)
T 3nh6_A 188 GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS-TV-VNADQILVIKD- 263 (306)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH-HH-HTCSEEEEEET-
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH-HH-HcCCEEEEEEC-
Confidence 347999999999999999999999999999999999999999999999864 799999999986 34 45999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 264 G~iv~~G~~ 272 (306)
T 3nh6_A 264 GCIVERGRH 272 (306)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 799999985
No 58
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-38 Score=350.54 Aligned_cols=201 Identities=21% Similarity=0.316 Sum_probs=171.8
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-PQRTAAYISQHDVHIGEMTVRE 217 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 217 (1326)
+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999988 999999998875432 2467999999999999999999
Q ss_pred HHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCC
Q 046656 218 TLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGIS 297 (1326)
Q Consensus 218 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 297 (1326)
|+.|+....+. .. ....++++++.+||++..+. .+..||
T Consensus 90 nl~~~~~~~~~----------~~--------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VE--------------------------RDRRVREMAEKLGIAHLLDR-----KPARLS 128 (240)
T ss_dssp HHHTTCTTSCH----------HH--------------------------HHHHHHHHHHTTTCTTTTTC-----CGGGSC
T ss_pred HHHHHHHHcCC----------ch--------------------------HHHHHHHHHHHcCCHHHhcC-----ChhhCC
Confidence 99986533210 00 01235678999999877664 455799
Q ss_pred hhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEE
Q 046656 298 GGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVY 377 (1326)
Q Consensus 298 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 377 (1326)
|||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+.. +++|+.++|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH-TCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986533 4556668899999999999999999999999
Q ss_pred EcChhhHH
Q 046656 378 QGPCELVL 385 (1326)
Q Consensus 378 ~G~~~~~~ 385 (1326)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
No 59
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2e-38 Score=353.45 Aligned_cols=193 Identities=21% Similarity=0.341 Sum_probs=168.9
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
+|+|+|++|++||+++|+||||||||||+++|+|..+ +. |+|.++|.+... ..+++.+||++|++.+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 8999999999999999999999999999999999887 46 999999987632 23456799999999888899999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc-------EEEEe
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS-------IIFMD 986 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~-------illLD 986 (1326)
||+.++.. . ... ++.++++++.++|.+..++.++ .||||||||++|||||+.+|+ +||||
T Consensus 92 e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 99987521 1 111 3458899999999988887754 599999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 987 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 987 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|||+|||+.++..+++.|+++.++|+|||++||+++ .+...+|++++|++ |++++.|+.
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 217 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 217 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999777999999999976 56678999999985 789998875
No 60
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-38 Score=346.86 Aligned_cols=198 Identities=21% Similarity=0.289 Sum_probs=170.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ + .+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 578899987762 3 69999999999999999999999999999999999887 4599999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
. ..++.+||++|++.+++.+||+||+.+....+.. .. . ++.++++++.++|.+. ++.+ ..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~---~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KV---N-KNEIMDALESVEVLDL-KKKL-----GELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CC---C-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-ch---H-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHH
Confidence 4 3567799999999999999999999987543321 11 1 3457899999999887 6665 369999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...+|+++++.
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 999999999999999999999999999999999999998766899999999987 4666788888764
No 61
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.1e-38 Score=353.59 Aligned_cols=212 Identities=25% Similarity=0.399 Sum_probs=175.1
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
..++++|+++.++. +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 36889999987720 13469999999999999999999999999999999999887 459999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccc-------cCC
Q 046656 888 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLV-------GLP 957 (1326)
Q Consensus 888 ~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v-------g~~ 957 (1326)
+.. ..+++.+||++|++.+++ .||+||+.|+. .... ++.++++++.+++.+..+... +..
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~-----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC-----TTCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC-----CCCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 753 224567999999998876 59999998752 1112 234678888888877655432 221
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
+..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++
T Consensus 143 -~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~ 218 (247)
T 2ff7_A 143 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK 218 (247)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999985 59999999999863 4 56999999986
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 219 -G~i~~~g~~ 227 (247)
T 2ff7_A 219 -GKIVEQGKH 227 (247)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799998874
No 62
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.3e-38 Score=360.11 Aligned_cols=214 Identities=23% Similarity=0.302 Sum_probs=173.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||++.++.. +.+.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 48899999877420 12469999999999999999999999999999999999887 4589999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHH-----HHHHHHHHHHHc--CCcccccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSET-----RKMFIEEIMELV--ELKPLRQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~-----~~~~v~~~l~~l--~l~~~~~~~vg~~~ 958 (1326)
.. ..+++.+|||+|++.+++ .||+||+.|+... . ...+. ....++++++.+ ++....+..+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~---~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~---- 154 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR---T-PTMEEITAVAMESGAHDFISGFPQGYDTEVGETG---- 154 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS---C-CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc---C-ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc----
Confidence 43 224567999999998877 5999999885321 1 11011 122346677777 6766666554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ .|+|||++||+++ ..+.||++++|++
T Consensus 155 -~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 155 -NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp -TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 36999999999999999999999999999999999999999999999864 4899999999975 3346999999986
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 232 -G~i~~~g~~ 240 (271)
T 2ixe_A 232 -GSVCEQGTH 240 (271)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799998875
No 63
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.9e-38 Score=359.94 Aligned_cols=208 Identities=26% Similarity=0.388 Sum_probs=167.0
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+++|+|||+.|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+| ..
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-ND 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SE
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccC-cc
Confidence 46999999999999999999999999999999999999998 9999999999876543 46799999998877 56
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
||+|||.|+....+ . .++....+.++ ....++. +....+|.+|. ..
T Consensus 143 Tv~eNi~~~~~~~~----~---~~~~~~~~~~~------------------------l~~~i~~--lp~gl~t~~~~-~g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----N---DEVEAAAQAAG------------------------IHDAIMA--FPEGYRTQVGE-RG 188 (306)
T ss_dssp EHHHHHHTTSTTCC----H---HHHHHHHHHHT------------------------CHHHHHH--STTGGGCEEST-TS
T ss_pred cHHHHHHhhcccCC----H---HHHHHHHHHhC------------------------cHHHHHh--ccchhhhHhcC-Cc
Confidence 99999998753211 0 01110000000 0111222 34466788874 56
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
..|||||||||+|||||+.+|+||||||||+|||+.+...|.+.|+++.. + .++|+++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~-~Tvi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--N-RTTIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--T-SEEEEECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--C-CEEEEEEcChHHHHc-CCEEEEEECC
Confidence 68999999999999999999999999999999999999999999998743 3 455568898887766 9999999999
Q ss_pred eEEEEcChhhHHH
Q 046656 374 QIVYQGPCELVLD 386 (1326)
Q Consensus 374 ~iv~~G~~~~~~~ 386 (1326)
+|++.|+++++..
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 64
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9.6e-38 Score=352.46 Aligned_cols=205 Identities=25% Similarity=0.372 Sum_probs=172.8
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCC-CCCCCCCH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHD-VHIGEMTV 215 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 215 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 56999999999999999999999999999999999999987 999999998875332346799999984 56778999
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc--ccccccccCccc
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD--VCADTLVGDEMV 293 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 293 (1326)
+||+.|+.... .... +....++++++.+||+ +..+. .+
T Consensus 97 ~enl~~~~~~~-~~~~----------------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~~ 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPDR----------------------------------DPVPLVKKAMEFVGLDFDSFKDR-----VP 136 (266)
T ss_dssp HHHHHHTTTTT-CTTS----------------------------------CSHHHHHHHHHHTTCCHHHHTTC-----CG
T ss_pred HHHHHHHHHhc-CCHH----------------------------------HHHHHHHHHHHHcCcCCcccccC-----Ch
Confidence 99999864321 1000 0012356778999998 76664 45
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +.+|+.++|+..++..+||+|++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999998653 556667899988898999999999999
Q ss_pred eEEEEcChhhHHH
Q 046656 374 QIVYQGPCELVLD 386 (1326)
Q Consensus 374 ~iv~~G~~~~~~~ 386 (1326)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988754
No 65
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-38 Score=350.50 Aligned_cols=210 Identities=27% Similarity=0.427 Sum_probs=173.3
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 56788887662 12459999999999999999999999999999999999887 45899999998764
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccc-------cCCCC
Q 046656 890 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLV-------GLPGE 959 (1326)
Q Consensus 890 ~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v-------g~~~~ 959 (1326)
. ..+++.+||++|++.+++ .||+||+.|+.. .... ++.++++++.+++.+..+... +. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 234567999999998877 599999987521 1112 234788899999987765542 11 23
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ .+ +.+|++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999987 6999999999975 33 56999999986 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
+++..|+.
T Consensus 214 ~i~~~g~~ 221 (243)
T 1mv5_A 214 QITGSGKH 221 (243)
T ss_dssp EECCCSCH
T ss_pred EEEEeCCH
Confidence 88888874
No 66
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.4e-37 Score=352.57 Aligned_cols=209 Identities=27% Similarity=0.319 Sum_probs=168.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCC--CCC---ccceEEEEccCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN--EFV---PQRTAAYISQHDVHI 210 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~~ 210 (1326)
.+++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.++
T Consensus 33 ~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (279)
T 2ihy_A 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109 (279)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTT
T ss_pred CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccc
Confidence 456999999999999999999999999999999999999998 999999998875 322 135799999986533
Q ss_pred --CCCCHHHHHHhhhhhc-cCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 211 --GEMTVRETLAFSARCQ-GVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 211 --~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
+.+||+||+.|+.... +. +.. +. .+....++++++.+||++..+..
T Consensus 110 ~~~~ltv~enl~~~~~~~~~~---~~~--------------~~--------------~~~~~~~~~~l~~~gl~~~~~~~ 158 (279)
T 2ihy_A 110 FQEGERVIDVVISGAFKSIGV---YQD--------------ID--------------DEIRNEAHQLLKLVGMSAKAQQY 158 (279)
T ss_dssp SCTTSBHHHHHHTTC--------------------------CC--------------HHHHHHHHHHHHHTTCGGGTTSB
T ss_pred cCCCCCHHHHHHhhhhhcccc---ccC--------------Cc--------------HHHHHHHHHHHHHcCChhHhcCC
Confidence 3569999999864210 00 000 00 01122356789999998877654
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEE-EEEecChhhHHhhCCe
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV-ISLLQPAPETYDLFDD 366 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~i-i~i~q~~~~~~~~~D~ 366 (1326)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++... +.|+. +.++|+..++.++||+
T Consensus 159 -----~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~ 232 (279)
T 2ihy_A 159 -----IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSK 232 (279)
T ss_dssp -----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCE
T ss_pred -----hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCE
Confidence 4579999999999999999999999999999999999999999999998654 44440 6688999899999999
Q ss_pred EEEecCCeEEEEcChhhH
Q 046656 367 IILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~ 384 (1326)
|++|++|++++.|+++++
T Consensus 233 v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 233 ILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEEEETTEEEEEEEHHHH
T ss_pred EEEEECCEEEEECCHHHH
Confidence 999999999999998876
No 67
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.4e-37 Score=343.87 Aligned_cols=201 Identities=26% Similarity=0.383 Sum_probs=162.5
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
.+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~- 96 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 96 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-
Confidence 356999999999999999999999999999999999999988 9999999998865432 357999999988775
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc-------c
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA-------D 285 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-------d 285 (1326)
.||+||+.|+... ... ..++.+++.+|+.+.. +
T Consensus 97 ~tv~enl~~~~~~----~~~------------------------------------~~~~~~l~~~~l~~~~~~~~~gl~ 136 (247)
T 2ff7_A 97 RSIIDNISLANPG----MSV------------------------------------EKVIYAAKLAGAHDFISELREGYN 136 (247)
T ss_dssp SBHHHHHTTTCTT----CCH------------------------------------HHHHHHHHHHTCHHHHHTSTTGGG
T ss_pred ccHHHHHhccCCC----CCH------------------------------------HHHHHHHHHhChHHHHHhCcchhh
Confidence 6999999885310 000 0112234444444322 3
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
+.++ +.+..|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++. . +.+|++++|+...+. .||
T Consensus 137 ~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~-g~tviivtH~~~~~~-~~d 211 (247)
T 2ff7_A 137 TIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--K-GRTVIIIAHRLSTVK-NAD 211 (247)
T ss_dssp CBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--T-TSEEEEECSSGGGGT-TSS
T ss_pred hhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--C-CCEEEEEeCCHHHHH-hCC
Confidence 3333 3467899999999999999999999999999999999999999999999973 2 455666788877664 599
Q ss_pred eEEEecCCeEEEEcChhhHH
Q 046656 366 DIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++|++++.|+++++.
T Consensus 212 ~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 212 RIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEEETTEEEEEECHHHHH
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998874
No 68
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.1e-37 Score=345.32 Aligned_cols=208 Identities=23% Similarity=0.288 Sum_probs=164.8
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcc--cCCCCceeeEEEECCccCCCCCc----cceEEEEccCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ--LDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHD 207 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d 207 (1326)
++.+++|+|+|+.+++|++++|+||||||||||+++|+|. ++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~ 89 (250)
T 2d2e_A 13 IDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYP 89 (250)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCC
T ss_pred ECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCC
Confidence 3446799999999999999999999999999999999998 6665 9999999998865432 23489999999
Q ss_pred CCCCCCCHHHHHHhhhhh-ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCC-ccccc
Q 046656 208 VHIGEMTVRETLAFSARC-QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGL-DVCAD 285 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~d 285 (1326)
.+++.+||+||+.++... .+.... . .+....++++++.+|| .+..+
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~gl~~~~~~ 137 (250)
T 2d2e_A 90 VEVPGVTIANFLRLALQAKLGREVG--------V------------------------AEFWTKVKKALELLDWDESYLS 137 (250)
T ss_dssp C-CCSCBHHHHHHHHHHHHHTSCCC--------H------------------------HHHHHHHHHHHHHHTCCGGGGG
T ss_pred ccccCCCHHHHHHHHHHhhccccCC--------H------------------------HHHHHHHHHHHHHcCCChhHhc
Confidence 999999999999986431 110000 0 0111235678999999 46666
Q ss_pred ccccCccccC-CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh-
Q 046656 286 TLVGDEMVRG-ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL- 363 (1326)
Q Consensus 286 t~vg~~~~~~-LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~- 363 (1326)
.. +.. |||||||||+||+||+.+|+++||||||+|||+.++..+++.|+++.+ .+++|+.++|+..++..+
T Consensus 138 ~~-----~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tvi~vtHd~~~~~~~~ 210 (250)
T 2d2e_A 138 RY-----LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG--PNFGALVITHYQRILNYIQ 210 (250)
T ss_dssp SB-----TTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS--TTCEEEEECSSSGGGGTSC
T ss_pred CC-----cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhc
Confidence 44 445 999999999999999999999999999999999999999999998743 356677788988888888
Q ss_pred CCeEEEecCCeEEEEcChhh
Q 046656 364 FDDIILLSDGQIVYQGPCEL 383 (1326)
Q Consensus 364 ~D~vilL~~G~iv~~G~~~~ 383 (1326)
||+|++|++|++++.|+++.
T Consensus 211 ~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 211 PDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp CSEEEEEETTEEEEEESHHH
T ss_pred CCEEEEEECCEEEEEeCHHH
Confidence 59999999999999999873
No 69
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.2e-37 Score=343.88 Aligned_cols=206 Identities=18% Similarity=0.207 Sum_probs=171.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++.. ...+.+|+|+|++|+ ||+++|+||||||||||+++|+|.. + .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5678888776310 011569999999999 9999999999999999999999987 5 4899999998754
Q ss_pred cccccceEE-EeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHH
Q 046656 890 QETFTRISG-YCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 890 ~~~~~~~~g-yv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqr 967 (1326)
....++.+| |++|++.+ .+||+||+.+...+. ... ++.++++++.++|. +..++.++ .||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKLY-----KLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCChh-----hCCHHHH
Confidence 211255789 99999877 889999999865432 111 34578999999998 88777764 5999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhc-eeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D-~v~~l~~gg~~~~~G~ 1046 (1326)
||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ |||++||+++ ++.+.+| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998743 9999999986 4667899 9999985 79999887
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 4
No 70
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.3e-37 Score=344.99 Aligned_cols=211 Identities=25% Similarity=0.384 Sum_probs=171.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++.. ..+.+|+|||++|++||+++|+||||||||||+++|+|..+ + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 47899998877421 11359999999999999999999999999999999999875 3 79999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-------QSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~~ 958 (1326)
.. ..+++.+||++|++.+++ .||+||+.|+.. ... ++.+.++++.+++.+.. ++.++..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 234567999999998876 599999987421 111 22356778887775543 2222222
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++. + +.+|++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 347999999999999999999999999999999999999999999999864 8999999999873 3 56999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 799998875
No 71
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.1e-36 Score=338.47 Aligned_cols=198 Identities=16% Similarity=0.214 Sum_probs=166.1
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
++++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv 83 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSV 83 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCH
Confidence 457999999999999999999999999999999999999997 999982 3579999999988889999
Q ss_pred HHHHHhhhhhc-cCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 216 RETLAFSARCQ-GVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 216 ~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
+||+.|+.... +.... +. .+....++++++.+||++..+. .+.
T Consensus 84 ~enl~~~~~~~~~~~~~-----------------~~--------------~~~~~~~~~~l~~~~l~~~~~~-----~~~ 127 (253)
T 2nq2_C 84 LDIVLMGRSTHINTFAK-----------------PK--------------SHDYQVAMQALDYLNLTHLAKR-----EFT 127 (253)
T ss_dssp HHHHHGGGGGGSCTTCC-----------------CC--------------HHHHHHHHHHHHHTTCGGGTTS-----BGG
T ss_pred HHHHHHhhhhhcccccC-----------------CC--------------HHHHHHHHHHHHHcCChHHhcC-----Chh
Confidence 99999964321 10000 00 0011235678999999877664 455
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCe
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 374 (1326)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.++||+|++|++|+
T Consensus 128 ~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS-QNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 79999999999999999999999999999999999999999999998653 25566778999999999999999999999
Q ss_pred EEEEcChhhH
Q 046656 375 IVYQGPCELV 384 (1326)
Q Consensus 375 iv~~G~~~~~ 384 (1326)
++.|+++++
T Consensus 207 -~~~g~~~~~ 215 (253)
T 2nq2_C 207 -FKFGETRNI 215 (253)
T ss_dssp -EEEEEHHHH
T ss_pred -EecCCHHHH
Confidence 999998876
No 72
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1e-36 Score=344.50 Aligned_cols=209 Identities=20% Similarity=0.356 Sum_probs=166.1
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+++|+|||+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 56999999999999999999999999999999999999998 9999999998764332 356999999988776 6
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHc--CCcccccccccCc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVL--GLDVCADTLVGDE 291 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 291 (1326)
||+||+.|+.... .. . .+..+.. ....++.+++.+ ||+...+ +
T Consensus 108 tv~enl~~~~~~~--~~-~---~~~~~~~------------------------~~~~~~~~l~~l~~gl~~~~~-----~ 152 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-M---EEITAVA------------------------MESGAHDFISGFPQGYDTEVG-----E 152 (271)
T ss_dssp BHHHHHHTTCSSC--CC-H---HHHHHHH------------------------HHHTCHHHHHHSTTGGGSBCC-----G
T ss_pred cHHHHHhhhcccC--Ch-H---HHHHHHH------------------------HHHhHHHHHHhhhcchhhhhc-----C
Confidence 9999999864211 00 0 0000000 001124456777 5654443 4
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++... .+++|++++|+...+. .||+|++|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW-ASRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTT-TTSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 56689999999999999999999999999999999999999999999986432 2556666889887765 599999999
Q ss_pred CCeEEEEcChhhHHH
Q 046656 372 DGQIVYQGPCELVLD 386 (1326)
Q Consensus 372 ~G~iv~~G~~~~~~~ 386 (1326)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
No 73
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2e-36 Score=341.71 Aligned_cols=221 Identities=24% Similarity=0.295 Sum_probs=172.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhccc--CCCCceeeEEEECCccCCCCCc----cceEEEEccCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL--DSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVH 209 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 209 (1326)
.+++|+|||+.+++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 32 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l 108 (267)
T 2zu0_C 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVE 108 (267)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCC
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCccc
Confidence 456999999999999999999999999999999999984 455 8999999998765432 2348999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-ccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTLV 288 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 288 (1326)
++.+||+|++.+...... . ..+. +. ....+....++++++.+||+ ...+.
T Consensus 109 ~~~~tv~e~~~~~~~~~~-------------~--~~~~-~~-----------~~~~~~~~~~~~~l~~~gl~~~~~~~-- 159 (267)
T 2zu0_C 109 IPGVSNQFFLQTALNAVR-------------S--YRGQ-ET-----------LDRFDFQDLMEEKIALLKMPEDLLTR-- 159 (267)
T ss_dssp CTTCBHHHHHHHHHHHHH-------------H--GGGC-CC-----------CCHHHHHHHHHHHHHHTTCCTTTTTS--
T ss_pred cccccHHHHHHHHHHhhh-------------h--hhcc-cc-----------CCHHHHHHHHHHHHHHcCCChhHhcC--
Confidence 999999999987532100 0 0000 00 00001123467789999996 44553
Q ss_pred cCcccc-CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh-CCe
Q 046656 289 GDEMVR-GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL-FDD 366 (1326)
Q Consensus 289 g~~~~~-~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~ 366 (1326)
.+. .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.. .+++|+.++|+..++..+ ||+
T Consensus 160 ---~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~--~g~tviivtHd~~~~~~~~~d~ 234 (267)
T 2zu0_C 160 ---SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD--GKRSFIIVTHYQRILDYIKPDY 234 (267)
T ss_dssp ---BTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC--SSCEEEEECSSGGGGGTSCCSE
T ss_pred ---CcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeeCHHHHHhhcCCE
Confidence 343 4999999999999999999999999999999999999999999998743 356677789998888776 899
Q ss_pred EEEecCCeEEEEcChhhHHHHHHhcCCC
Q 046656 367 IILLSDGQIVYQGPCELVLDFFESMGFK 394 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~~~F~~lG~~ 394 (1326)
|++|++|++++.|+++++.. .+..||.
T Consensus 235 v~~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 235 VHVLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEEEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EEEEECCEEEEEcCHHHHhh-hhhcchh
Confidence 99999999999999988753 4445443
No 74
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-37 Score=341.79 Aligned_cols=202 Identities=22% Similarity=0.320 Sum_probs=165.7
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---ccceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---PQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 212 (1326)
.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~- 89 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA- 89 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-
Confidence 456999999999999999999999999999999999999987 999999999875432 2457999999988776
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc------
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT------ 286 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------ 286 (1326)
.||+||+.|+... . .. ...++.+++.+|+.+..+.
T Consensus 90 ~tv~enl~~~~~~-~--~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~ 130 (243)
T 1mv5_A 90 GTIRENLTYGLEG-D--YT------------------------------------DEDLWQVLDLAFARSFVENMPDQLN 130 (243)
T ss_dssp EEHHHHTTSCTTS-C--SC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGG
T ss_pred ccHHHHHhhhccC-C--CC------------------------------------HHHHHHHHHHhChHHHHHhCccchh
Confidence 5999999885311 0 00 0113445677777665443
Q ss_pred -cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 287 -LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 287 -~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
.++ +.+..|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++. . +++|+.++|+...+ ..||
T Consensus 131 ~~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~-~~tvi~vtH~~~~~-~~~d 205 (243)
T 1mv5_A 131 TEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--K-GRTTLVIAHRLSTI-VDAD 205 (243)
T ss_dssp CEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--T-TSEEEEECCSHHHH-HHCS
T ss_pred chhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--C-CCEEEEEeCChHHH-HhCC
Confidence 333 4567899999999999999999999999999999999999999999999874 2 45566678887766 4699
Q ss_pred eEEEecCCeEEEEcChhhHH
Q 046656 366 DIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++|++++.|+++++.
T Consensus 206 ~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 206 KIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp EEEEEETTEECCCSCHHHHH
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999998875
No 75
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.5e-36 Score=335.35 Aligned_cols=197 Identities=24% Similarity=0.308 Sum_probs=169.1
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCCC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 214 (1326)
++|+|+|+.+++|++++|+|||||||||||++|+|.++| . |+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999986 3 999999988754332 356999999988889999
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
|+||+.++... .. . ...++++++.+||++..+. .+.
T Consensus 90 v~e~l~~~~~~-~~----------~----------------------------~~~~~~~l~~~~l~~~~~~-----~~~ 125 (249)
T 2qi9_C 90 VWHYLTLHQHD-KT----------R----------------------------TELLNDVAGALALDDKLGR-----STN 125 (249)
T ss_dssp HHHHHHTTCSS-TT----------C----------------------------HHHHHHHHHHTTCGGGTTS-----BGG
T ss_pred HHHHHHHhhcc-CC----------c----------------------------HHHHHHHHHHcCChhHhcC-----Chh
Confidence 99999985211 00 0 0124667899999877664 455
Q ss_pred CCChhhhHHHHHHHHhhcCCc-------cceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 295 GISGGQKKRLTTGEMMVGPAL-------ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~-------illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.|||||||||+||+||+.+|+ +|||||||+|||+.++..+.+.|+++.+. +++|+.++|+..++..+||++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEE
Confidence 799999999999999999999 99999999999999999999999998653 556677899999999999999
Q ss_pred EEecCCeEEEEcChhhH
Q 046656 368 ILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~ 384 (1326)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998876
No 76
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.6e-36 Score=337.72 Aligned_cols=194 Identities=20% Similarity=0.186 Sum_probs=165.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEE-EEccCCCCCCCCCH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAA-YISQHDVHIGEMTV 215 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 215 (1326)
+++|+|+|+.++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 569999999999 9999999999999999999999999 88 999999998875321245799 99999776 8999
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-ccccccccCcccc
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTLVGDEMVR 294 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 294 (1326)
+||+.++..... . ....++.+++.+||+ +..+. .+.
T Consensus 91 ~enl~~~~~~~~--~------------------------------------~~~~~~~~l~~~gl~~~~~~~-----~~~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--L------------------------------------DRDLFLEMLKALKLGEEILRR-----KLY 127 (263)
T ss_dssp HHHHHHHHHHTC--C------------------------------------CHHHHHHHHHHTTCCGGGGGS-----BGG
T ss_pred HHHHHHhhhhcc--h------------------------------------HHHHHHHHHHHcCCChhHhcC-----Chh
Confidence 999998643210 0 011246678899998 76654 455
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC-eEEEecCC
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD-DIILLSDG 373 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D-~vilL~~G 373 (1326)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++. . +++.++|+..++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 799999999999999999999999999999999999999999998752 2 66668899889999999 99999999
Q ss_pred eEEEEcChhhHH
Q 046656 374 QIVYQGPCELVL 385 (1326)
Q Consensus 374 ~iv~~G~~~~~~ 385 (1326)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
No 77
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=358.73 Aligned_cols=210 Identities=21% Similarity=0.293 Sum_probs=176.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||++.++. +++.+|+||||+|++||+++|+|||||||||||++|+|..+ .+|+|.++|.++
T Consensus 19 ~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 19 QMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred eEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 5899999988741 23569999999999999999999999999999999999874 589999999987
Q ss_pred Ccc---cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 046656 889 KQE---TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGL------PGE 959 (1326)
Q Consensus 889 ~~~---~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~------~~~ 959 (1326)
... .+++.+|||+|+..+++ +||+||+.+.. ... ++.++++++.++|.++.++.... ...
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 542 34578999999999887 69999996421 111 24578999999998877766532 122
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
.+|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++. .|+|+|++|||++ ....+||+++|++ |
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G 229 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-N 229 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-T
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-C
Confidence 3499999999999999999999999999999999999999999999864 4899999999975 4566999999985 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
+++..|+.
T Consensus 230 ~i~~~g~~ 237 (390)
T 3gd7_A 230 KVRQYDSI 237 (390)
T ss_dssp EEEEESSH
T ss_pred EEEEECCH
Confidence 99999985
No 78
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.5e-36 Score=331.33 Aligned_cols=200 Identities=20% Similarity=0.333 Sum_probs=160.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++. +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 4788999887631 13469999999999999999999999999999999999887 4599999998
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCC
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS-------LVGLPGESG 961 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~vg~~~~~~ 961 (1326)
.+||++|++.+++. ||+||+.|+.. .... .++++++.+++.+..+. .++.+ ...
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 37999999988875 99999987521 1111 23445555555443222 22222 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-KNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++ .+ +.+|++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999974 5554 4899999999975 33 56999999986 78
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|+.
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998874
No 79
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=7.4e-36 Score=335.63 Aligned_cols=200 Identities=23% Similarity=0.338 Sum_probs=161.0
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.+++ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999999863 7999999998754332 357999999988775 6
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHc-------CCcccccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVL-------GLDVCADT 286 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 286 (1326)
||+||+.|+... .. + .+ ++.+++.+ ++++..||
T Consensus 108 tv~enl~~~~~~----~~-~--~~---------------------------------~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKLD----AT-D--EE---------------------------------VIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCTT----CC-H--HH---------------------------------HHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCCC----CC-H--HH---------------------------------HHHHHHHhCCHHHHHhccccccc
Confidence 999999985310 00 0 00 11122233 34455666
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ +++|++++|+...+ ..||+
T Consensus 148 ~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~---~~tviivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK---NRTLIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT---TSEEEEECSSGGGS-TTCSE
T ss_pred ccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCHHHH-HhCCE
Confidence 665 45678999999999999999999999999999999999999999999998742 45566678887766 46999
Q ss_pred EEEecCCeEEEEcChhhHHH
Q 046656 367 IILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~~ 386 (1326)
|++|++|+++..|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 80
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.2e-37 Score=359.29 Aligned_cols=201 Identities=23% Similarity=0.248 Sum_probs=163.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
.+++|+|||+.|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++||+|++.+++
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~- 107 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS- 107 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-
Confidence 4569999999999999999999999999999999999986 5 8999999999876544 368999999998886
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC--
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD-- 290 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~-- 290 (1326)
+||+||+.+.... . ...++++++.+||++..+.....
T Consensus 108 ~tv~enl~~~~~~-----~------------------------------------~~~v~~~l~~~~L~~~~~~~p~~l~ 146 (390)
T 3gd7_A 108 GTFRKNLDPNAAH-----S------------------------------------DQEIWKVADEVGLRSVIEQFPGKLD 146 (390)
T ss_dssp EEHHHHHCTTCCS-----C------------------------------------HHHHHHHHHHTTCHHHHTTSTTGGG
T ss_pred cCHHHHhhhcccc-----C------------------------------------HHHHHHHHHHhCCHHHHhhcccccc
Confidence 6999999742210 0 01134567777877655433221
Q ss_pred ----ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 291 ----EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 291 ----~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
+....|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+++++.++|+. +....||+
T Consensus 147 ~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~---~~~tvi~vtHd~-e~~~~aDr 222 (390)
T 3gd7_A 147 FVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF---ADCTVILCEARI-EAMLECDQ 222 (390)
T ss_dssp CEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT---TTSCEEEECSSS-GGGTTCSE
T ss_pred cccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcCH-HHHHhCCE
Confidence 2334599999999999999999999999999999999999999999998752 345666678876 56677999
Q ss_pred EEEecCCeEEEEcChhhHHH
Q 046656 367 IILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~~ 386 (1326)
|++|++|++++.|+++++..
T Consensus 223 i~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 223 FLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEEETTEEEEESSHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998853
No 81
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=9.6e-36 Score=330.29 Aligned_cols=199 Identities=23% Similarity=0.397 Sum_probs=157.2
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++. +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 678899887631 12469999999999999999999999999999999999887 5799999998
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCCCCC
Q 046656 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-------QSLVGLPGESGL 962 (1326)
Q Consensus 890 ~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~~~~~L 962 (1326)
.+||++|++. ++.+||+||+.|+... ..+ ..+++++.+++.+.. ++..+. .+..|
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQL------EEP----YYRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSCC------CTT----HHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCcccc------CHH----HHHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 2899999976 4678999999875321 111 123334444432211 111222 13479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK---NTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
|||||||++|||||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||++||+++. + +.+|++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 333 48999999999873 3 57999999986 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
+++..|+.
T Consensus 205 ~i~~~g~~ 212 (237)
T 2cbz_A 205 KISEMGSY 212 (237)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 99998875
No 82
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.8e-35 Score=370.26 Aligned_cols=216 Identities=27% Similarity=0.384 Sum_probs=179.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++.. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++.
T Consensus 342 i~~~~v~~~y~~~----------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 342 LEFKNVHFAYPAR----------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEECSSC----------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhh
Confidence 8999999887421 12469999999999999999999999999999999999887 46999999999875
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCCC
Q 046656 890 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPGE 959 (1326)
Q Consensus 890 ~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~~ 959 (1326)
. ..+++.+|||+|++.+++ .||+||+.++.... ...+ ++.++++++.+++.+. .|+.+|..+
T Consensus 410 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~- 481 (595)
T 2yl4_A 410 QLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKG- 481 (595)
T ss_dssp TBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSS-
T ss_pred hCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCCC-
Confidence 4 235667999999998886 59999999853210 0112 2457888999888654 345555433
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
.+||||||||++|||||+++|++|+||||||+||+.++..+++.|+++.+ |+|+|++||+++ ..+.+|++++|++ |
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~-G 557 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLDQ-G 557 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEEC-C
Confidence 47999999999999999999999999999999999999999999999876 899999999976 3467999999985 7
Q ss_pred EEEEEcCCCC
Q 046656 1040 QEIYVGPLGS 1049 (1326)
Q Consensus 1040 ~~~~~G~~~~ 1049 (1326)
+++..|+.++
T Consensus 558 ~i~~~g~~~~ 567 (595)
T 2yl4_A 558 KITEYGKHEE 567 (595)
T ss_dssp EEEEEECSCC
T ss_pred EEEEECCHHH
Confidence 9999998753
No 83
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-35 Score=370.86 Aligned_cols=212 Identities=21% Similarity=0.312 Sum_probs=174.9
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
..++++|+++.++. +.+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEE
Confidence 36899999988742 23469999999999999999999999999999999999887 469999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046656 888 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLP 957 (1326)
Q Consensus 888 ~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~ 957 (1326)
+.. ..+++.+|||+|++.+++. ||+||+.++. ...+. +.++++++..++.+. .++.++..
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR-----EDATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC-----SSCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC-----CCCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 754 2356789999999988864 9999998752 11222 234556666665443 34445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|++||+++ ....+|++++|++
T Consensus 477 -~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 -GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLHE 552 (587)
T ss_dssp -SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEET
T ss_pred -CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEEC
Confidence 34799999999999999999999999999999999999999999999975 5899999999986 3468999999985
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 553 -G~i~~~g~~ 561 (587)
T 3qf4_A 553 -GKVAGFGTH 561 (587)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799999986
No 84
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.5e-36 Score=326.45 Aligned_cols=192 Identities=17% Similarity=0.227 Sum_probs=158.2
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCC
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 212 (1326)
+++. ++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.
T Consensus 19 ~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~ 92 (214)
T 1sgw_A 19 GYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRK 92 (214)
T ss_dssp ESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTT
T ss_pred EeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCC
Confidence 3344 7999999999999999999999999999999999999988 999999998875 235679999999988999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.++....+. .. + ...++++++.+||+.. + +.
T Consensus 93 ~tv~enl~~~~~~~~~-~~----------------------------------~-~~~~~~~l~~~gl~~~-~-----~~ 130 (214)
T 1sgw_A 93 ISVEDYLKAVASLYGV-KV----------------------------------N-KNEIMDALESVEVLDL-K-----KK 130 (214)
T ss_dssp SBHHHHHHHHHHHTTC-CC----------------------------------C-HHHHHHHHHHTTCCCT-T-----SB
T ss_pred CCHHHHHHHHHHhcCC-ch----------------------------------H-HHHHHHHHHHcCCCcC-C-----CC
Confidence 9999999987543221 00 0 1124667899999765 4 44
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+. +++|+.++|+..++..++|+|+++ .
T Consensus 131 ~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~~~~~~d~v~~~-~ 207 (214)
T 1sgw_A 131 LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE--KGIVIISSREELSYCDVNENLHKY-S 207 (214)
T ss_dssp GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH--HSEEEEEESSCCTTSSEEEEGGGG-B
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEe-C
Confidence 6679999999999999999999999999999999999999999999998643 455666788888888888887644 4
Q ss_pred CeE
Q 046656 373 GQI 375 (1326)
Q Consensus 373 G~i 375 (1326)
|+|
T Consensus 208 ~~~ 210 (214)
T 1sgw_A 208 TKI 210 (214)
T ss_dssp C--
T ss_pred Ccc
Confidence 444
No 85
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.7e-35 Score=370.71 Aligned_cols=212 Identities=25% Similarity=0.381 Sum_probs=175.9
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
..++++|++++++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 36899999988752 23469999999999999999999999999999999999887 469999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 046656 888 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-------QSLVGLP 957 (1326)
Q Consensus 888 ~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 957 (1326)
+.. ..+++.+|||+|++.+++. ||+||+.++. ...+. +.++++++..++.+.. ++.+|..
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR-----PTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC-----SSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC-----CCCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 753 3456789999999988865 9999998752 11222 3366777777765433 3444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
+ .+||||||||++|||||+++|++|+|||||||||+.++..+++.++++. +|+|+|+++|+++. .+.+|++++|++
T Consensus 475 g-~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~ 550 (578)
T 4a82_A 475 G-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIEN 550 (578)
T ss_dssp G-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEET
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC
Confidence 3 4799999999999999999999999999999999999999999999875 47999999999873 356999999985
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 551 -G~i~~~g~~ 559 (578)
T 4a82_A 551 -GHIVETGTH 559 (578)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799999985
No 86
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.7e-35 Score=325.13 Aligned_cols=197 Identities=21% Similarity=0.303 Sum_probs=152.5
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv 85 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TI 85 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CH
Confidence 356999999999999999999999999999999999999998 99999998 48999999888775 99
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
+||+.|+.... + .......+..+ .+..++. +....++.++ +.+..
T Consensus 86 ~enl~~~~~~~------~--~~~~~~~~~~~------------------------l~~~~~~--~~~~~~~~~~-~~~~~ 130 (229)
T 2pze_A 86 KENIIFGVSYD------E--YRYRSVIKACQ------------------------LEEDISK--FAEKDNIVLG-EGGIT 130 (229)
T ss_dssp HHHHHTTSCCC------H--HHHHHHHHHTT------------------------CHHHHTT--STTGGGSCBC-TTCTT
T ss_pred HHHhhccCCcC------h--HHHHHHHHHhC------------------------cHHHHHh--Cccccccccc-CCCCc
Confidence 99999853210 0 00000000000 0111222 2223345554 34678
Q ss_pred CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHH-HHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCe
Q 046656 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSL-RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l-~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 374 (1326)
|||||||||+|||||+.+|++++|||||+|||+.++..+++.+ ++.. .+++|+.++|+...+. .||+|++|++|+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~---~~~tvi~vtH~~~~~~-~~d~v~~l~~G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHLK-KADKILILHEGS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHHH-HCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh---CCCEEEEEcCChHHHH-hCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999864 4432 2456666788877664 599999999999
Q ss_pred EEEEcChhhHH
Q 046656 375 IVYQGPCELVL 385 (1326)
Q Consensus 375 iv~~G~~~~~~ 385 (1326)
+++.|+++++.
T Consensus 207 i~~~g~~~~~~ 217 (229)
T 2pze_A 207 SYFYGTFSELQ 217 (229)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999998874
No 87
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.1e-35 Score=368.85 Aligned_cols=212 Identities=24% Similarity=0.327 Sum_probs=177.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++. +++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEc
Confidence 5899999988741 11469999999999999999999999999999999999887 4699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-------QSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~~ 958 (1326)
.. ..+++.+|||+|++.+++ .||+||+.++.. .+.+ ++.++++++.+++.+.. |+.+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~- 477 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN- 477 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred cccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCC-
Confidence 54 235667999999998887 499999998531 1222 23478888888887644 3444443
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|++|+||||||+||+.++..+++.|+++.+ |+|+|+++|+++. .+.||++++|++
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~- 553 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED- 553 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999865 9999999999873 357999999986
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b60_A 554 GIIVERGTH 562 (582)
T ss_dssp TEEEEEECH
T ss_pred CEEEEecCH
Confidence 799999985
No 88
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=328.64 Aligned_cols=199 Identities=24% Similarity=0.318 Sum_probs=153.2
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 56999999999999999999999999999999999999987 99999998 4899999976 5689999
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-ccccccccCccccC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTLVGDEMVRG 295 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~~ 295 (1326)
||+.|+.... . + ...+..+. ..+++.+++. ...+|.++ +.+..
T Consensus 84 enl~~~~~~~---~--~---~~~~~~~~---------------------------~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE---E--P---YYRSVIQA---------------------------CALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC---T--T---HHHHHHHH---------------------------TTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC---H--H---HHHHHHHH---------------------------HhhHHHHHhcccccccccc-CCCCC
Confidence 9999864211 0 0 00000000 0012223332 12334443 55778
Q ss_pred CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeE
Q 046656 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 375 (1326)
|||||||||+|||||+.+|++++|||||+|||+.++..+++.+++......+++|+.++|+...+ ..||+|++|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i 206 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKI 206 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999885211111245666678887665 57999999999999
Q ss_pred EEEcChhhHHH
Q 046656 376 VYQGPCELVLD 386 (1326)
Q Consensus 376 v~~G~~~~~~~ 386 (1326)
++.|+++++..
T Consensus 207 ~~~g~~~~~~~ 217 (237)
T 2cbz_A 207 SEMGSYQELLA 217 (237)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHhh
Confidence 99999988753
No 89
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.6e-35 Score=369.66 Aligned_cols=212 Identities=25% Similarity=0.337 Sum_probs=177.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDV 407 (582)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEh
Confidence 5899999988741 12469999999999999999999999999999999999887 4589999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS-------LVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~vg~~~ 958 (1326)
.. ..+++.+|||+|++.+++ .||+||+.++.. .+.+ ++.++++++.+++.+..+. .+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~- 477 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE----GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN- 477 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC----CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-
Confidence 43 345678999999998887 499999988531 1122 2347888999988765443 34433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|++|+||||||+||+.++..+++.|+++.+ |+|+|+++|+++ ..+.+|++++|++
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~- 553 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE- 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999864 999999999986 3457999999986
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b5x_A 554 GEIIERGRH 562 (582)
T ss_pred CEEEEECCH
Confidence 799999985
No 90
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.6e-35 Score=368.82 Aligned_cols=210 Identities=25% Similarity=0.385 Sum_probs=173.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 354 ~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i 419 (598)
T 3qf4_B 354 EIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDI 419 (598)
T ss_dssp CEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEh
Confidence 689999998874 12459999999999999999999999999999999999887 4699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS-------LVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~vg~~~ 958 (1326)
.. ..+++.+|||+|++.+++ .||+||+.++. ...++ +.++++++.+++.+..+. .+|..
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~- 488 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN-----PGATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDN- 488 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS-----TTCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHH-
T ss_pred hhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC-----CCCCH----HHHHHHHHHhCCHHHHHhccccccchhcCC-
Confidence 53 345678999999998875 59999998752 11122 235666666666544333 33322
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|++||+++. + +.+|++++|++
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~- 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD- 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-
Confidence 24699999999999999999999999999999999999999999999985 59999999999973 4 56999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 565 G~i~~~g~~ 573 (598)
T 3qf4_B 565 GEIVEMGKH 573 (598)
T ss_dssp SSEEECSCH
T ss_pred CEEEEECCH
Confidence 799999985
No 91
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=9.6e-35 Score=363.88 Aligned_cols=209 Identities=23% Similarity=0.393 Sum_probs=166.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++.
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 429 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD 429 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc
Confidence 356999999999999999999999999999999999999998 9999999999876543 4579999999887765
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
||+||+.++... ... .++.+..+.+++ +.. .-.+++..||.+|+ .
T Consensus 430 -tv~eni~~~~~~----~~~---~~~~~~~~~~~~------------------------~~~--~~~lp~g~~t~~~~-~ 474 (578)
T 4a82_A 430 -TVKENILLGRPT----ATD---EEVVEAAKMANA------------------------HDF--IMNLPQGYDTEVGE-R 474 (578)
T ss_dssp -BHHHHHGGGCSS----CCH---HHHHHHHHHTTC------------------------HHH--HHTSTTGGGCBCCG-G
T ss_pred -cHHHHHhcCCCC----CCH---HHHHHHHHHhCc------------------------HHH--HHhCcchhhhhhcc-C
Confidence 999999986321 000 111111110000 111 12356678899985 5
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
..+|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++. .++ +++.++|+.+.+ ..||+|++|++
T Consensus 475 g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~-t~i~itH~l~~~-~~~d~i~~l~~ 550 (578)
T 4a82_A 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDR-TTLIVAHRLSTI-THADKIVVIEN 550 (578)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTS-EEEEECSSGGGT-TTCSEEEEEET
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCC-EEEEEecCHHHH-HcCCEEEEEEC
Confidence 66899999999999999999999999999999999999999999998863 244 555578887766 55999999999
Q ss_pred CeEEEEcChhhHHH
Q 046656 373 GQIVYQGPCELVLD 386 (1326)
Q Consensus 373 G~iv~~G~~~~~~~ 386 (1326)
|+++++|+++++.+
T Consensus 551 G~i~~~g~~~el~~ 564 (578)
T 4a82_A 551 GHIVETGTHRELIA 564 (578)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
No 92
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-34 Score=362.74 Aligned_cols=209 Identities=25% Similarity=0.382 Sum_probs=167.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 430 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS- 430 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-
Confidence 356999999999999999999999999999999999999998 9999999999876543 467999999988775
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+||+.++.... . ..+..+..+.++ .+..+ -.+++..||.+|. .
T Consensus 431 ~tv~eni~~~~~~~---~----~~~~~~~~~~~~------------------------~~~~i--~~l~~g~~~~~~~-~ 476 (587)
T 3qf4_A 431 GTIKENLKWGREDA---T----DDEIVEAAKIAQ------------------------IHDFI--ISLPEGYDSRVER-G 476 (587)
T ss_dssp EEHHHHHTTTCSSC---C----HHHHHHHHHHTT------------------------CHHHH--HTSSSGGGCEECS-S
T ss_pred ccHHHHHhccCCCC---C----HHHHHHHHHHhC------------------------cHHHH--HhcccchhhHhcC-C
Confidence 59999999864211 0 011111111110 01111 2356677888885 5
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+.+|||||||||+|||||+.+|++++||||||+||+.++..+.+.++++. ++.+++.++|+...+ ..||+|++|++
T Consensus 477 ~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~l~~~-~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT---KGCTTFIITQKIPTA-LLADKILVLHE 552 (587)
T ss_dssp SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS---TTCEEEEEESCHHHH-TTSSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC---CCCEEEEEecChHHH-HhCCEEEEEEC
Confidence 66899999999999999999999999999999999999999999999863 345566688887665 58999999999
Q ss_pred CeEEEEcChhhHHH
Q 046656 373 GQIVYQGPCELVLD 386 (1326)
Q Consensus 373 G~iv~~G~~~~~~~ 386 (1326)
|+++++|+++++.+
T Consensus 553 G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 553 GKVAGFGTHKELLE 566 (587)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
No 93
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.6e-34 Score=360.56 Aligned_cols=202 Identities=22% Similarity=0.368 Sum_probs=165.4
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 56999999999999999999999999999999999999998 9999999999876543 357999999988876 5
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcC-------Ccccccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG-------LDVCADT 286 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 286 (1326)
||+||+.++.. . .... .+ ++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~~~~---~~---------------------------------~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-E--EYSR---EQ---------------------------------IEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-S--CCCH---HH---------------------------------HHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-C--CCCH---HH---------------------------------HHHHHHHcCCHHHHHhccccccc
Confidence 99999998641 0 0000 00 111222222 3446788
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.+|+ ...+|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++.+ +++++.++|+...+ +.||+
T Consensus 473 ~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRLSTI-EQADE 547 (582)
T ss_dssp BCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT---TSEEEEECSCGGGT-TTCSE
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEeccHHHH-HhCCE
Confidence 8885 4678999999999999999999999999999999999999999999998742 44555577877655 57999
Q ss_pred EEEecCCeEEEEcChhhHHH
Q 046656 367 IILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~~ 386 (1326)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
No 94
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.8e-34 Score=359.98 Aligned_cols=203 Identities=25% Similarity=0.397 Sum_probs=165.5
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 46999999999999999999999999999999999999998 9999999999876543 357999999988876 5
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcC-------Ccccccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG-------LDVCADT 286 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 286 (1326)
||+||+.++..... ..+ + ..++++++.+| +++..||
T Consensus 433 tv~eni~~~~~~~~---~~~------~----------------------------~~~~~~~~~~~l~~~~~~l~~g~~~ 475 (595)
T 2yl4_A 433 SIAENIAYGADDPS---SVT------A----------------------------EEIQRVAEVANAVAFIRNFPQGFNT 475 (595)
T ss_dssp BHHHHHHTTSSSTT---TSC------H----------------------------HHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CHHHHHhhcCCCcc---ccC------H----------------------------HHHHHHHHHcCCHHHHHhCcccccc
Confidence 99999998643100 000 0 01122333333 4556788
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.+|+ .+.+|||||||||+|||||+.+|++++|||||+|||+.++..+.+.++++.+ + .+++.++|+...+ +.||+
T Consensus 476 ~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~-~tvi~itH~~~~~-~~~d~ 550 (595)
T 2yl4_A 476 VVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--G-RTVLVIAHRLSTI-KNANM 550 (595)
T ss_dssp BCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--T-SEEEEECCCHHHH-HHSSE
T ss_pred cccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHH-HcCCE
Confidence 8885 4568999999999999999999999999999999999999999999998753 3 4555678887665 56999
Q ss_pred EEEecCCeEEEEcChhhHH
Q 046656 367 IILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~ 385 (1326)
|++|++|++++.|+++++.
T Consensus 551 i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 551 VAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp EEEEETTEEEEEECSCC--
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998875
No 95
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.1e-33 Score=376.37 Aligned_cols=212 Identities=27% Similarity=0.400 Sum_probs=181.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||+++|+.. +++++|+|+|++|+||+++||+||||||||||+++|.|..+ +.+|+|.+||+++
T Consensus 415 ~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i 482 (1321)
T 4f4c_A 415 DITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDV 482 (1321)
T ss_dssp CEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred cEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccc
Confidence 69999999998632 23579999999999999999999999999999999999887 5699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-------LRQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~vg~~~ 958 (1326)
+. ..+++.+|||+|++.++. .|++|||.|+. .+.+ ++.+.++++..++.+ -.|+.+|..|
T Consensus 483 ~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G 552 (1321)
T 4f4c_A 483 RDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552 (1321)
T ss_dssp TTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSS
T ss_pred hhccHHHHhhcccccCCcceeeC-CchhHHHhhhc-----ccch----HHHHHHHHHHccchhHHHcCCCCCccEecCCC
Confidence 64 346778999999998875 59999999862 1222 234777888877643 3466777655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
. +||||||||++||||++++|+||+||||||+||++++..+++.|+++. +|+|+|+++|+++ ..+.+|+|++|++
T Consensus 553 ~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~- 627 (1321)
T 4f4c_A 553 T-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKN- 627 (1321)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEET-
T ss_pred C-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeC-
Confidence 4 799999999999999999999999999999999999999999999876 4899999999987 4678999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 628 G~ive~Gth 636 (1321)
T 4f4c_A 628 GQVVEVGDH 636 (1321)
T ss_dssp TEEEEEECH
T ss_pred CeeeccCCH
Confidence 799999986
No 96
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3e-34 Score=360.02 Aligned_cols=201 Identities=23% Similarity=0.368 Sum_probs=164.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 56999999999999999999999999999999999999998 9999999998865432 467999999988776 5
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcC-------Ccccccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG-------LDVCADT 286 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 286 (1326)
||+||+.++.. . .... .+ ++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~~~~---~~---------------------------------~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE-G--EYTR---EQ---------------------------------IEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC-C--CCCH---HH---------------------------------HHHHHHHCCCHHHHHhCcccccc
Confidence 99999998631 0 0000 00 112222222 3446678
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.+|+ ....||||||||++|||||+.+|++++|||||+|||+.++..+.+.++++.+ +++++.++|+...+ +.||+
T Consensus 473 ~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK---NKTVLVIAHRLSTI-EQADE 547 (582)
T ss_pred hhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC---CCEEEEEecCHHHH-HhCCE
Confidence 8885 4678999999999999999999999999999999999999999999998742 44555577877655 47999
Q ss_pred EEEecCCeEEEEcChhhHH
Q 046656 367 IILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~ 385 (1326)
|++|++|++++.|+++++.
T Consensus 548 i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLL 566 (582)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999999885
No 97
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-34 Score=359.86 Aligned_cols=209 Identities=25% Similarity=0.374 Sum_probs=166.4
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 442 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS- 442 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-
Confidence 356999999999999999999999999999999999999998 9999999999876543 467999999988774
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+||+.++.... .. .++.+..+.++ .+..++ .+++..||.+|+ .
T Consensus 443 ~tv~eni~~~~~~~---~~----~~~~~~~~~~~------------------------~~~~~~--~~~~g~~t~~~~-~ 488 (598)
T 3qf4_B 443 TTVKENLKYGNPGA---TD----EEIKEAAKLTH------------------------SDHFIK--HLPEGYETVLTD-N 488 (598)
T ss_dssp SBHHHHHHSSSTTC---CT----THHHHHTTTTT------------------------CHHHHH--TSTTGGGCBCHH-H
T ss_pred ccHHHHHhcCCCCC---CH----HHHHHHHHHhC------------------------CHHHHH--hccccccchhcC-C
Confidence 69999999863210 00 01110000000 011111 355677888884 4
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
..+|||||||||+|||||+.+|++++||||||+||+.++..+.+.++++. . +.+++.++|+...+. .||+|++|++
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~-~~t~i~itH~l~~~~-~~d~i~~l~~ 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--E-GKTSIIIAHRLNTIK-NADLIIVLRD 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--T-TSEEEEESCCTTHHH-HCSEEEEECS
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--C-CCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 56899999999999999999999999999999999999999999999874 2 455566788877664 5999999999
Q ss_pred CeEEEEcChhhHHH
Q 046656 373 GQIVYQGPCELVLD 386 (1326)
Q Consensus 373 G~iv~~G~~~~~~~ 386 (1326)
|+++++|+++++.+
T Consensus 565 G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 565 GEIVEMGKHDELIQ 578 (598)
T ss_dssp SSEEECSCHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
No 98
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.6e-34 Score=322.64 Aligned_cols=195 Identities=22% Similarity=0.369 Sum_probs=148.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.. +.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 47788887631 358999999999999999999999999999999999887 6799999988
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCC
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS-------LVGLPGESG 961 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~vg~~~~~~ 961 (1326)
.+||++|++.+++. ||+||+. +. + ... ..++++++.+++.+..+. .++.. ...
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcCc-cCc
Confidence 37999999988775 9999997 32 1 111 123455666666543222 22211 347
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-KNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++ ..+.||++++|++ |+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999974 4543 4899999999975 3456999999985 79
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|+.
T Consensus 236 i~~~g~~ 242 (290)
T 2bbs_A 236 SYFYGTF 242 (290)
T ss_dssp EEEEECH
T ss_pred EEEeCCH
Confidence 9999875
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.7e-33 Score=317.41 Aligned_cols=195 Identities=21% Similarity=0.298 Sum_probs=148.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++.+++ .||+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 116 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIK 116 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHH
Confidence 45899999999999999999999999999999999999987 99999998 4899999988777 5999
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
||+. +... . + .......+..+ .+..++.+ ....++.++ +.+..|
T Consensus 117 enl~-~~~~----~--~--~~~~~~~~~~~------------------------l~~~l~~~--~~~~~~~~~-~~~~~L 160 (290)
T 2bbs_A 117 ENII-GVSY----D--E--YRYRSVIKACQ------------------------LEEDISKF--AEKDNIVLG-EGGITL 160 (290)
T ss_dssp HHHH-TTCC----C--H--HHHHHHHHHTT------------------------CHHHHHTS--TTGGGCBC-----CCC
T ss_pred HHhh-Cccc----c--h--HHHHHHHHHhC------------------------hHHHHHhc--cccccchhc-CccCcC
Confidence 9998 4211 0 0 00000000000 01112222 223344454 346789
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHH-HHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeE
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSL-RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l-~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 375 (1326)
||||||||+|||||+.+|++++|||||+|||+.++..+++.+ +++. .+++|++++|+...+ ..||+|++|++|++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~---~~~tviivtHd~~~~-~~~d~i~~l~~G~i 236 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHL-KKADKILILHEGSS 236 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHH-HHSSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh---CCCEEEEEecCHHHH-HcCCEEEEEECCeE
Confidence 999999999999999999999999999999999999999864 3432 245666688887766 46999999999999
Q ss_pred EEEcChhhHH
Q 046656 376 VYQGPCELVL 385 (1326)
Q Consensus 376 v~~G~~~~~~ 385 (1326)
++.|+++++.
T Consensus 237 ~~~g~~~~l~ 246 (290)
T 2bbs_A 237 YFYGTFSELQ 246 (290)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHh
Confidence 9999998874
No 100
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.2e-32 Score=371.96 Aligned_cols=212 Identities=27% Similarity=0.388 Sum_probs=174.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||+++|+.. ++.++|+|||++|+|||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 387 ~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~i 454 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQDI 454 (1284)
T ss_dssp CEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEH
Confidence 68999999988531 12469999999999999999999999999999999999887 4699999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-------LRQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~vg~~~ 958 (1326)
.. ..+++.+|||+|++.+++. ||+||+.|+.. +.+. +.++++++..++.+ -.|+.+|..+
T Consensus 455 ~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 524 (1284)
T 3g5u_A 455 RTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTM----DEIEKAVKEANAYDFIMKLPHQFDTLVGERG 524 (1284)
T ss_dssp GGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCH----HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSS
T ss_pred HhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhccccccccccCCC
Confidence 53 3456779999999988865 99999998631 2222 23555566555543 2355566544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
.+||||||||++|||||+++|+||+||||||+||++++..+++.++++. +|+|+|+++|+++ ....+|+|++|++
T Consensus 525 -~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl~~- 599 (1284)
T 3g5u_A 525 -AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGFDG- 599 (1284)
T ss_dssp -CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEECSS-
T ss_pred -CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEEC-
Confidence 4799999999999999999999999999999999999999999998865 5999999999976 3456999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 600 G~i~~~g~~ 608 (1284)
T 3g5u_A 600 GVIVEQGNH 608 (1284)
T ss_dssp SCCCCEECH
T ss_pred CEEEEECCH
Confidence 799999986
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=9.8e-30 Score=316.97 Aligned_cols=191 Identities=25% Similarity=0.267 Sum_probs=159.9
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRET 218 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 218 (1326)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577788889999999999999999999999999999987 899875 2369999999777788999998
Q ss_pred HHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCCh
Q 046656 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISG 298 (1326)
Q Consensus 219 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 298 (1326)
+...... ... ....++.+++.+||.+..+. .+..|||
T Consensus 438 ~~~~~~~-----------~~~---------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~LSG 474 (607)
T 3bk7_A 438 LSKIDSS-----------KLN---------------------------SNFYKTELLKPLGIIDLYDR-----NVEDLSG 474 (607)
T ss_dssp HHHHHHH-----------HHH---------------------------CHHHHHHTHHHHTCTTTTTS-----BGGGCCH
T ss_pred HHhhhcc-----------CCC---------------------------HHHHHHHHHHHcCCchHhcC-----ChhhCCH
Confidence 8653100 000 01234667899999876664 4557999
Q ss_pred hhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC--CeEE
Q 046656 299 GQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD--GQIV 376 (1326)
Q Consensus 299 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~--G~iv 376 (1326)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999986533 45666689999999999999999986 8889
Q ss_pred EEcChhhHHH
Q 046656 377 YQGPCELVLD 386 (1326)
Q Consensus 377 ~~G~~~~~~~ 386 (1326)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999998864
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1.8e-29 Score=311.77 Aligned_cols=191 Identities=24% Similarity=0.257 Sum_probs=158.2
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRET 218 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 218 (1326)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 567777888999999999999999999999999999987 899875 2369999999777788999888
Q ss_pred HHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCCh
Q 046656 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISG 298 (1326)
Q Consensus 219 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 298 (1326)
+....... + . ....++.+++.+||.+..+. .+..|||
T Consensus 368 ~~~~~~~~-----~------~---------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----L------N---------------------------SNFYKTELLKPLGIIDLYDR-----EVNELSG 404 (538)
T ss_dssp HHHHHHHH-----H------T---------------------------CHHHHHHTTTTTTCGGGTTS-----BGGGCCH
T ss_pred HHhhhccC-----C------C---------------------------HHHHHHHHHHHcCChhhhcC-----ChhhCCH
Confidence 76421100 0 0 01124567888899766654 4557999
Q ss_pred hhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC--CeEE
Q 046656 299 GQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD--GQIV 376 (1326)
Q Consensus 299 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~--G~iv 376 (1326)
||||||+||++|+.+|++|+|||||+|||..++..+.+.|++++... +.+|++++|+.+++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999986433 45566689999999999999999986 8899
Q ss_pred EEcChhhHHH
Q 046656 377 YQGPCELVLD 386 (1326)
Q Consensus 377 ~~G~~~~~~~ 386 (1326)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=3.5e-29 Score=308.13 Aligned_cols=192 Identities=20% Similarity=0.215 Sum_probs=157.9
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRET 218 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 218 (1326)
.|+++|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++| +.++|++|+....+.+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466677889999999999999999999999999999998 99998765 358999998766678999999
Q ss_pred HHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCCh
Q 046656 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISG 298 (1326)
Q Consensus 219 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 298 (1326)
+.+..... . . + ....++++++.+||.+..+. .+..|||
T Consensus 351 l~~~~~~~-~-~------------------~-----------------~~~~~~~~l~~~~l~~~~~~-----~~~~LSG 388 (538)
T 3ozx_A 351 LENASKDA-L-S------------------T-----------------SSWFFEEVTKRLNLHRLLES-----NVNDLSG 388 (538)
T ss_dssp HHHHCSST-T-C------------------T-----------------TSHHHHHTTTTTTGGGCTTS-----BGGGCCH
T ss_pred HHHhhhhc-c-c------------------h-----------------hHHHHHHHHHHcCCHHHhcC-----ChhhCCH
Confidence 98732100 0 0 0 00124566788888876664 4557999
Q ss_pred hhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC--CeEE
Q 046656 299 GQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD--GQIV 376 (1326)
Q Consensus 299 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~--G~iv 376 (1326)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~-~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE-RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999998764 356677789999999999999999986 6677
Q ss_pred EEcChhhHH
Q 046656 377 YQGPCELVL 385 (1326)
Q Consensus 377 ~~G~~~~~~ 385 (1326)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777776654
No 104
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=8.7e-29 Score=317.18 Aligned_cols=193 Identities=20% Similarity=0.267 Sum_probs=157.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.+...|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+.
T Consensus 435 ~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 466667777663 3579999999999999999999999999999999995 222 44432
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 046656 889 KQETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~-~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgGq 966 (1326)
.. ...++|++|+. ..++.+||.|++.+ .. ... +++++++++.+|+. +..++.++ .|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~---~~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SG---VGT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT--TC---SSC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH--hh---cCH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHH
Confidence 21 12368999874 66788999999976 11 111 34588999999994 66777764 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE-EEc
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1045 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~-~~G 1045 (1326)
|||++|||+|+.+|+||||||||+|||+.++..+.+.|++ .|+|||++|||+. .+...+|++++|++ |+++ |.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCC
Confidence 9999999999999999999999999999999999999988 5899999999976 57778999999986 6765 788
Q ss_pred CC
Q 046656 1046 PL 1047 (1326)
Q Consensus 1046 ~~ 1047 (1326)
+.
T Consensus 629 ~~ 630 (986)
T 2iw3_A 629 NF 630 (986)
T ss_dssp CH
T ss_pred CH
Confidence 75
No 105
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.3e-29 Score=307.40 Aligned_cols=193 Identities=23% Similarity=0.222 Sum_probs=159.0
Q ss_pred ceeecceeEEEeCc-----eEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCC
Q 046656 137 LTILKDVSGIIKPG-----RMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIG 211 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G-----~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 211 (1326)
..+++|+|+.+++| |+++|+|||||||||||++|+|.++|+ +|+. + .+..++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35789999999999 779999999999999999999999987 7752 1 2346899999866666
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
..||+|++....+ +. .. ....++.+++.+||.+..+.
T Consensus 427 ~~tv~e~~~~~~~--~~---~~---------------------------------~~~~~~~~l~~l~l~~~~~~----- 463 (608)
T 3j16_B 427 PGTVRQLFFKKIR--GQ---FL---------------------------------NPQFQTDVVKPLRIDDIIDQ----- 463 (608)
T ss_dssp CSBHHHHHHHHCS--ST---TT---------------------------------SHHHHHHTHHHHTSTTTSSS-----
T ss_pred CccHHHHHHHHhh--cc---cc---------------------------------cHHHHHHHHHHcCChhhhcC-----
Confidence 7899998754221 00 00 00123567889999877664
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.... +.+|++++|+.+++..+||+|++|+
T Consensus 464 ~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~-g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 464 EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp BSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEECE
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 455799999999999999999999999999999999999999999999986543 4566678999999999999999998
Q ss_pred C--CeEEEEcChhhHHH
Q 046656 372 D--GQIVYQGPCELVLD 386 (1326)
Q Consensus 372 ~--G~iv~~G~~~~~~~ 386 (1326)
+ |+++..|++++++.
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999999875
No 106
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.96 E-value=3.4e-30 Score=319.51 Aligned_cols=155 Identities=17% Similarity=0.170 Sum_probs=114.8
Q ss_pred eeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHH
Q 046656 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAW 921 (1326)
Q Consensus 842 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~ 921 (1326)
++.+++|++++|+|+||||||||++.++|...+ .|+ +.+.|++|+.. ..+.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 448999999999999999999999999986432 121 12455566531 12222221
Q ss_pred hhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH-----H
Q 046656 922 LRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 996 (1326)
Q Consensus 922 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~-----~ 996 (1326)
+. ..+ +++ +...++..+.+... ..||+||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~--g~~-------~~~-~~~~g~~~~~~~~p-----~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMD-------FEE-MERQNLLKIVCAYP-----ESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCC-------HHH-HHHTTSEEECCCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCC-------HHH-HHhCCCEEEEEecc-----ccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 122 122 22455655555443 359999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCc---------HHHHHHhceeeEEecC
Q 046656 997 AAIVMRTVKNTVETGRTVVCTIHQPS---------IDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 997 ~~~i~~~l~~~~~~g~tvi~~~H~~~---------~~~~~~~D~v~~l~~g 1038 (1326)
+..+.++++.+++.|.|||+++|+.. ..+...+|++++|.+|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEE
Confidence 99999999999888999999999971 2455678999999864
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=5.9e-29 Score=317.25 Aligned_cols=204 Identities=22% Similarity=0.297 Sum_probs=134.6
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHH---------------------hhhcCCCCCC--e---eEEEEEEcCccC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTGG--Y---ISGNITISGYPK 888 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl---------------------~~L~g~~~~~--~---~~G~i~i~g~~~ 888 (1326)
+.+|+||||+|++||++||+||||||||||+ +++.|...++ . ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999997 6666654322 1 145677777654
Q ss_pred CcccccceEEEeecCCCC-------------------CCCCCHHHHHHHHHHhhccCCCCHHHHHH------HHHHHHHH
Q 046656 889 KQETFTRISGYCEQNDIH-------------------SPLVTVYESLLYSAWLRLRTEVDSETRKM------FIEEIMEL 943 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~-------------------~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~------~v~~~l~~ 943 (1326)
... .++.+|+++|...+ ++.+||+||+.+...+..... ....... ...++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 12345555554322 356799999987433221110 0000000 11245888
Q ss_pred cCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 046656 944 VELKPL-RQSLVGLPGESGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1020 (1326)
Q Consensus 944 l~l~~~-~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1020 (1326)
+||.+. .++.++ .|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|+++.++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 998765 566654 599999999999999999998 999999999999999999999999998889999999999
Q ss_pred CcHHHHHHhceeeEEe-----cCcEEEEEcCC
Q 046656 1021 PSIDIFEAFDELFLMK-----RGGQEIYVGPL 1047 (1326)
Q Consensus 1021 ~~~~~~~~~D~v~~l~-----~gg~~~~~G~~ 1047 (1326)
++ ....+|++++|. ++|++++.|+.
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTP 293 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCH
Confidence 75 456799999993 36899999986
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=4.2e-24 Score=274.26 Aligned_cols=109 Identities=24% Similarity=0.272 Sum_probs=92.1
Q ss_pred HHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhcCC---ccceEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 046656 270 LTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA---LALFMDEISNGLDSSTTFHIVNSLRQNIHILN 346 (1326)
Q Consensus 270 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~---~illLDEptsgLD~~t~~~i~~~l~~~~~~~~ 346 (1326)
.+.++|+.+||.... . ++.+..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .
T Consensus 784 ~~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~- 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-R- 857 (916)
T ss_dssp HHHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c-
Confidence 356779999996421 2 2456789999999999999999865 79999999999999999999999999865 3
Q ss_pred CEEEEEEecChhhHHhhCCeEEEe------cCCeEEEEcChhhHH
Q 046656 347 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPCELVL 385 (1326)
Q Consensus 347 ~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 385 (1326)
+.+||+++|+.+.+ ..||+|++| ++|+|+++|+++++.
T Consensus 858 G~TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 858 GNTVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCEEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 55666789998766 459999999 899999999999985
No 109
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=1.6e-24 Score=275.40 Aligned_cols=107 Identities=24% Similarity=0.279 Sum_probs=91.8
Q ss_pred HHHHHHHcCCcc-cccccccCccccCCChhhhHHHHHHHHhhcCC---ccceEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 046656 271 TDYYLKVLGLDV-CADTLVGDEMVRGISGGQKKRLTTGEMMVGPA---LALFMDEISNGLDSSTTFHIVNSLRQNIHILN 346 (1326)
Q Consensus 271 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~---~illLDEptsgLD~~t~~~i~~~l~~~~~~~~ 346 (1326)
...+|+.+||.. ..+ +.+..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .
T Consensus 825 ~~~~L~~~gL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~--~ 897 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD--N 897 (972)
T ss_dssp HHHHHHHTTCSSSBTT-----CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHcCCCccccc-----CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--C
Confidence 356789999975 344 445679999999999999999764 99999999999999999999999999865 3
Q ss_pred CEEEEEEecChhhHHhhCCeEEEe------cCCeEEEEcChhhHH
Q 046656 347 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPCELVL 385 (1326)
Q Consensus 347 ~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 385 (1326)
+.+|++++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 56677789998875 689999999 789999999999875
No 110
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=4.3e-24 Score=272.46 Aligned_cols=108 Identities=23% Similarity=0.250 Sum_probs=92.2
Q ss_pred HHHHHHHcCCcc-cccccccCccccCCChhhhHHHHHHHHhhcCC---ccceEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 046656 271 TDYYLKVLGLDV-CADTLVGDEMVRGISGGQKKRLTTGEMMVGPA---LALFMDEISNGLDSSTTFHIVNSLRQNIHILN 346 (1326)
Q Consensus 271 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~---~illLDEptsgLD~~t~~~i~~~l~~~~~~~~ 346 (1326)
...+|+.+||.. ..+ +.+..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|++++. .
T Consensus 843 ~~~~L~~lgL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~--~ 915 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLG-----QPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD--K 915 (993)
T ss_dssp HHHHHHHTTGGGSBTT-----CCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHcCCCccccc-----CccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--C
Confidence 356789999975 333 445679999999999999999864 99999999999999999999999999865 3
Q ss_pred CEEEEEEecChhhHHhhCCeEEEe------cCCeEEEEcChhhHHH
Q 046656 347 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPCELVLD 386 (1326)
Q Consensus 347 ~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~~ 386 (1326)
+.+|++++|+.+++ ..||+|++| ++|++++.|+++++..
T Consensus 916 G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 916 GNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 56677789998876 689999999 7899999999998753
No 111
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.90 E-value=5.7e-24 Score=270.93 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCccc-ccccccCccccCCChhhhHHHHHHHHhhcC---CccceEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 046656 270 LTDYYLKVLGLDVC-ADTLVGDEMVRGISGGQKKRLTTGEMMVGP---ALALFMDEISNGLDSSTTFHIVNSLRQNIHIL 345 (1326)
Q Consensus 270 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~---~~illLDEptsgLD~~t~~~i~~~l~~~~~~~ 345 (1326)
.++.+|+.+||... .+ +.+..|||||||||+||++|+.+ |++|||||||+|||+.+...+.+.|++++.
T Consensus 709 ~~~~~L~~~gL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-- 781 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLG-----QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-- 781 (842)
T ss_dssp HHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCCccccc-----CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--
Confidence 45778999999763 23 45668999999999999999996 799999999999999999999999999865
Q ss_pred CCEEEEEEecChhhHHhhCCeEEEe------cCCeEEEEcChhhHH
Q 046656 346 NGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPCELVL 385 (1326)
Q Consensus 346 ~~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 385 (1326)
.+.+|++++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 782 ~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 782 AGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 356677789999888 889999999 799999999999874
No 112
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.90 E-value=2.3e-24 Score=260.16 Aligned_cols=204 Identities=17% Similarity=0.159 Sum_probs=141.4
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC------------------------------------CeeEE
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYISG 879 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~------------------------------------~~~~G 879 (1326)
.+++++++.+++| +++|+|+|||||||||++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 9999999999999999999653321 01268
Q ss_pred EEEEcCccCCccc---c-cceEEEeecCCCCCCCCCHHHHHHHHHHhhcc-------------------CCCC-------
Q 046656 880 NITISGYPKKQET---F-TRISGYCEQNDIHSPLVTVYESLLYSAWLRLR-------------------TEVD------- 929 (1326)
Q Consensus 880 ~i~i~g~~~~~~~---~-~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~-------------------~~~~------- 929 (1326)
++.+||.+.+... . ...+++++|++.+... +..+...|.-..... ....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999999876422 2 2347999998766543 454444332111000 0000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCcccc----------------cc---cccCCC-
Q 046656 930 -------------------------------SETRKMFIEEIMELVELKPLR----------------QS---LVGLPG- 958 (1326)
Q Consensus 930 -------------------------------~~~~~~~v~~~l~~l~l~~~~----------------~~---~vg~~~- 958 (1326)
.....+.+++.++.+++.+.. +. .....+
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000113345556666654310 00 111000
Q ss_pred -----CCC-CCHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhc
Q 046656 959 -----ESG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFD 1030 (1326)
Q Consensus 959 -----~~~-LSgGqrqrl~ia~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1030 (1326)
... ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|+++. +|+|||+|||++ ++...+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 011 7999999999999999999 9999999999999999999999999997 589999999997 4567899
Q ss_pred eeeEE----ecCcEEEEEc
Q 046656 1031 ELFLM----KRGGQEIYVG 1045 (1326)
Q Consensus 1031 ~v~~l----~~gg~~~~~G 1045 (1326)
++++| .+ |+++...
T Consensus 364 ~i~~l~k~~~~-G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSHV 381 (415)
T ss_dssp EEEEEEEEEET-TEEEEEE
T ss_pred eEEEEEEeccC-CceEEEE
Confidence 99999 75 5666543
No 113
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.2e-26 Score=277.73 Aligned_cols=183 Identities=14% Similarity=0.060 Sum_probs=142.5
Q ss_pred ecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEE-E-EEEcCccCCcccccceEEEeecCCC---CCCCCCHH
Q 046656 839 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISG-N-ITISGYPKKQETFTRISGYCEQNDI---HSPLVTVY 913 (1326)
Q Consensus 839 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~Q~~~---~~~~~Tv~ 913 (1326)
.++|+++++|++++|+||||||||||+++|+|... +.+| + |.+||. .++.++|++|+.. +.+.+|++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 47999999999999999999999999999999876 4689 8 999982 2456899999874 44567999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH--HhhCCcE----EEEeC
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVE--LVANPSI----IFMDE 987 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~a--L~~~p~i----llLDE 987 (1326)
||+ |+...... ... .+.+.++++.+|+.+..+ . ..|||||||||+|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~--~~~---~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSG--ATL---LHNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSS--CCS---SCCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccC--cch---HHHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 65332111 111 123456777788877655 2 3699999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc--H---HHHHHhce-----eeEEecCcEEEEEcCC
Q 046656 988 -PTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 988 -PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~D~-----v~~l~~gg~~~~~G~~ 1047 (1326)
||++||+. ...+.+.+++ .|.|+|+++|+.+ . ++..++|+ +++|++.|+++ .|+.
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~ 333 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDD 333 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCH
Confidence 99999999 5555555554 3789999999976 3 34567899 99998345667 7775
No 114
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.3e-26 Score=273.70 Aligned_cols=184 Identities=12% Similarity=0.069 Sum_probs=141.4
Q ss_pred cceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceee-E-EEECCccCCCCCccceEEEEccCCC---CCCCCCH
Q 046656 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSG-R-VTYNGHDMNEFVPQRTAAYISQHDV---HIGEMTV 215 (1326)
Q Consensus 141 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G-~-V~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 215 (1326)
.++|+.+++|++++|+||||||||||+|+|+|...|+ +| + |.++|. +++.++|++|+.. +...+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 4799999999999999999999999999999999876 89 8 999982 3567899999873 4556899
Q ss_pred HHHHHhhhhh-ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 216 RETLAFSARC-QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 216 ~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
+||+ |+... .+. ...+ .++.+++.+||+...+ ..
T Consensus 200 ~eni-~~~~~~~~~-~~~~------------------------------------~~~~ll~~~gl~~~~~-------~~ 234 (460)
T 2npi_A 200 QLPT-WGQSLTSGA-TLLH------------------------------------NKQPMVKNFGLERINE-------NK 234 (460)
T ss_dssp TCTT-CSCBCBSSC-CSSC------------------------------------CBCCEECCCCSSSGGG-------CH
T ss_pred hhhh-cccccccCc-chHH------------------------------------HHHHHHHHhCCCcccc-------hh
Confidence 9999 76542 110 0000 0122355677766543 45
Q ss_pred CCChhhhHHHHHHHH--hhcCCcc----ceEec-CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChh------hHH
Q 046656 295 GISGGQKKRLTTGEM--MVGPALA----LFMDE-ISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAP------ETY 361 (1326)
Q Consensus 295 ~LSGGqkqRvsia~a--l~~~~~i----llLDE-ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~------~~~ 361 (1326)
.|||||||||++|++ |+.+|++ +|||| ||++||+. ...+.+.+++ .+.++|+ ++|+.. ++.
T Consensus 235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tvii-Vth~~~~~l~~~~~~ 308 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIML-VLCSETDPLWEKVKK 308 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEE-EECCSSCTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEE-EEccCchhhhHHHHH
Confidence 799999999999999 9999999 99999 99999999 4444444443 3455555 445444 666
Q ss_pred hhCCe-----EEEec-CCeEEEEcChhhHH
Q 046656 362 DLFDD-----IILLS-DGQIVYQGPCELVL 385 (1326)
Q Consensus 362 ~~~D~-----vilL~-~G~iv~~G~~~~~~ 385 (1326)
+++|+ |++|+ +|+++ .|+++++.
T Consensus 309 ~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 309 TFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred HhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 89999 99999 99999 99987663
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.88 E-value=6.6e-23 Score=247.44 Aligned_cols=237 Identities=15% Similarity=0.118 Sum_probs=149.0
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC-----------------------------------Cce
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS-----------------------------------LKV 180 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~-----------------------------------~~~ 180 (1326)
+..+|+++++.+.+| +++|+|||||||||||++|.+.+.+. ..-
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~ 125 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAG 125 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTS
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCC
Confidence 345799999999999 99999999999999999997766421 011
Q ss_pred eeEEEECCccCCCCCc----cceEEEEccCCCCCCCCCHHHHHHhhhhhccC-----CccchhhhHhHHHHHHhCCCCch
Q 046656 181 SGRVTYNGHDMNEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQGV-----GSRYDMLTELARREKEAGIKPDL 251 (1326)
Q Consensus 181 ~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-----~~~~~~~~~~~~~~~~~~i~pd~ 251 (1326)
+|++.+||.+++.... ...+++++|++.++. .+..+...|--..... ...|....+..+..... .+...
T Consensus 126 ~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~ 203 (415)
T 4aby_A 126 RGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASES 203 (415)
T ss_dssp CEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ceEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhh
Confidence 6889999988753221 134899999876543 3565555543221100 00000000000000000 00000
Q ss_pred -----------hHHH-----------HHHHhhhhhHHHHHHHHHHHHHcCCccccc----------c---------cccC
Q 046656 252 -----------FIDV-----------FMKAAATEGQEANVLTDYYLKVLGLDVCAD----------T---------LVGD 290 (1326)
Q Consensus 252 -----------~~~~-----------~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d----------t---------~vg~ 290 (1326)
..+. ..+............++..++.++++...- + .+..
T Consensus 204 ~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 283 (415)
T 4aby_A 204 SKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSA 283 (415)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEES
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEc
Confidence 0000 000011112223345566677777754110 0 1110
Q ss_pred ------ccccC-CChhhhHHHHHHHHhhcCC--ccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHH
Q 046656 291 ------EMVRG-ISGGQKKRLTTGEMMVGPA--LALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETY 361 (1326)
Q Consensus 291 ------~~~~~-LSGGqkqRvsia~al~~~~--~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 361 (1326)
..++. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++. . +.+|++++|.. ++.
T Consensus 284 ~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~-~~~vi~itH~~-~~~ 359 (415)
T 4aby_A 284 NPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--D-TRQVLVVTHLA-QIA 359 (415)
T ss_dssp SSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--T-TSEEEEECSCH-HHH
T ss_pred CCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--C-CCEEEEEeCcH-HHH
Confidence 12222 6999999999999999999 9999999999999999999999999985 2 44555578876 667
Q ss_pred hhCCeEEEe----cCCeEEEEc
Q 046656 362 DLFDDIILL----SDGQIVYQG 379 (1326)
Q Consensus 362 ~~~D~vilL----~~G~iv~~G 379 (1326)
+.||++++| ++|+++...
T Consensus 360 ~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 360 ARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TTCSEEEEEEEEEETTEEEEEE
T ss_pred hhcCeEEEEEEeccCCceEEEE
Confidence 899999999 999987653
No 116
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=3.3e-25 Score=240.16 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=99.3
Q ss_pred ceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 046656 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 834 ~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
++.+|+|| ++||+++|+||||||||||+++|+|. + +.+|+|............++.+||++|++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 35689996 89999999999999999999999998 5 34566632111111123456789999975 4
Q ss_pred HHH-HHHHHh--hccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 046656 914 ESL-LYSAWL--RLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990 (1326)
Q Consensus 914 E~l-~f~~~l--r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts 990 (1326)
||+ .+.... ....... .+.++++++. + + |||||++|||||+.+|++|||||||+
T Consensus 77 enl~~~~~~~~~~~~~~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDMVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp ---CTTTHHHHHHHTTTSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred HHHHHHHHHHHHHHHHhcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 555 331100 0000011 1234555543 2 2 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 046656 991 GLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1022 (1326)
Q Consensus 991 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1022 (1326)
| ++..+++.|+++ ++|+||| +|||++
T Consensus 134 ~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 134 T----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp C----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred c----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9 888899999988 6689999 999975
No 117
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.86 E-value=8.9e-22 Score=232.20 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=73.5
Q ss_pred CCCCHHHHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceee
Q 046656 960 SGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELF 1033 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~------~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~ 1033 (1326)
..||||||||++||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+++|+++ ..+.+|+++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~~ 355 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRKL 355 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCEE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEEE
Confidence 469999999999999999 799999999999999999999999999999888999999999975 467899999
Q ss_pred EEecCcEEEE
Q 046656 1034 LMKRGGQEIY 1043 (1326)
Q Consensus 1034 ~l~~gg~~~~ 1043 (1326)
+|++ |+++.
T Consensus 356 ~l~~-G~i~~ 364 (365)
T 3qf7_A 356 RITG-GVVVN 364 (365)
T ss_dssp EEET-TEEC-
T ss_pred EEEC-CEEEe
Confidence 9986 67653
No 118
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=1.6e-21 Score=226.67 Aligned_cols=86 Identities=23% Similarity=0.223 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhcee--e
Q 046656 960 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDEL--F 1033 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v--~ 1033 (1326)
..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. +|.|||++||++. +.+.+|++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEE
Confidence 469999999999999997 6889999999999999999999999999984 5899999999964 66789986 8
Q ss_pred EEecCcEEEEEcCCC
Q 046656 1034 LMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 1034 ~l~~gg~~~~~G~~~ 1048 (1326)
+|.+|...+.....+
T Consensus 295 ~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 295 TMVNGVSAIVPVEVE 309 (322)
T ss_dssp EESSSCEEEEECCC-
T ss_pred EEeCCEEEEEEEEcc
Confidence 888887877777653
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.85 E-value=1.2e-22 Score=213.96 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=101.0
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCC-CCCHHHHHHH
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSP-LVTVYESLLY 918 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~-~~Tv~E~l~f 918 (1326)
||||++++||+++|+||||||||||++++.+... .+++ . ...|+++|+..... .-++++.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999764221 1111 0 12366777642110 0011121111
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH---
Q 046656 919 SAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 995 (1326)
Q Consensus 919 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~--- 995 (1326)
.. +.....+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 65 -----------------~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 65 -----------------IV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp -----------------HH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred -----------------HH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11 122233444444432 236999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhcCCEEEEEecCCc
Q 046656 996 -------------AAAIVMRTVKNTVETGRTVVCTIHQPS 1022 (1326)
Q Consensus 996 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1022 (1326)
....+++.|+++.++|.|+|+++|+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558889999888777999999999864
No 120
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.83 E-value=3.3e-20 Score=218.84 Aligned_cols=84 Identities=24% Similarity=0.375 Sum_probs=73.6
Q ss_pred ccccCCChhhhHHHHHHHHhh------cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 291 EMVRGISGGQKKRLTTGEMMV------GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~------~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
..+..|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.. . +.+|++++|+... .+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~-g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-L-NKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-S-SSEEEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecchHH-HHhC
Confidence 466789999999999999999 79999999999999999999999999998754 3 5566668888866 7889
Q ss_pred CeEEEecCCeEEE
Q 046656 365 DDIILLSDGQIVY 377 (1326)
Q Consensus 365 D~vilL~~G~iv~ 377 (1326)
|+|++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999874
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.83 E-value=5e-23 Score=223.06 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=97.7
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCC
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIG 211 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 211 (1326)
+.++++.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++|++|++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~---- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL---- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH----
Confidence 344556789996 89999999999999999999999999 876 677732101111112346799999975
Q ss_pred CCCHHHHH-HhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 212 EMTVRETL-AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 212 ~lTV~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+||+ .+..... ..+. ... + ...++.+++. |
T Consensus 76 ----~enl~~~~~~~~---------~~~~------~~~-~-----------------~~~~~~~l~~-g----------- 106 (208)
T 3b85_A 76 ----NEKIDPYLRPLH---------DALR------DMV-E-----------------PEVIPKLMEA-G----------- 106 (208)
T ss_dssp --------CTTTHHHH---------HHHT------TTS-C-----------------TTHHHHHHHT-T-----------
T ss_pred ----HHHHHHHHHHHH---------HHHH------Hhc-c-----------------HHHHHHHHHh-C-----------
Confidence 5666 4421100 0000 000 0 0012333332 2
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhH
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPET 360 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 360 (1326)
+ ||||||+|||||+.+|++|||||||+| ++..+.+.|+++ . .+++|+ ++|+..++
T Consensus 107 -----l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~--~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 -----I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G--FGSKMV-VTGDITQV 161 (208)
T ss_dssp -----S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C--TTCEEE-EEEC----
T ss_pred -----C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c--CCCEEE-EECCHHHH
Confidence 2 999999999999999999999999999 788888888876 2 356677 78887544
No 122
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=1.9e-23 Score=247.43 Aligned_cols=171 Identities=14% Similarity=0.145 Sum_probs=136.1
Q ss_pred eEeeecceeEEeCCe--------------------EEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCccccc
Q 046656 835 LVLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFT 894 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge--------------------~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~ 894 (1326)
+.+|++||+++++|+ ++||+||||||||||+|+|+|... +.+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----
Confidence 358999999999999 999999999999999999999876 35799999886542
Q ss_pred ceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH--HHHHHHH
Q 046656 895 RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE--QRKRLTI 972 (1326)
Q Consensus 895 ~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG--qrqrl~i 972 (1326)
+ .+|++|++ .++.+|+.|++.++. . +..++++++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899985 567889988875531 0 12367889999987653322 28999 9999999
Q ss_pred HHHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hc----CCEEEEEecCCcH-HHHHHhcee
Q 046656 973 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVKNTV-----ET----GRTVVCTIHQPSI-DIFEAFDEL 1032 (1326)
Q Consensus 973 a~aL~~----------~p~illLDEPtsgLD~~~~~~i~~~l~~~~-----~~----g~tvi~~~H~~~~-~~~~~~D~v 1032 (1326)
|++|+. +|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+. ++.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999874 22 2678899998762 266677777
Q ss_pred e
Q 046656 1033 F 1033 (1326)
Q Consensus 1033 ~ 1033 (1326)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 5
No 123
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=1.9e-23 Score=227.40 Aligned_cols=184 Identities=13% Similarity=0.066 Sum_probs=119.8
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
..+++| .+|++||+++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|+...++.+|+.|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcC
Confidence 457888 6899999999999999999999999999764 233333333332211 22456899999987777778777
Q ss_pred HHHHHHHhhc---cCCCCHHHHHHHHHHH------HHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 046656 915 SLLYSAWLRL---RTEVDSETRKMFIEEI------MELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 985 (1326)
Q Consensus 915 ~l~f~~~lr~---~~~~~~~~~~~~v~~~------l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illL 985 (1326)
++.+...... ....+.++.++.+++. ++.+++.+.++...+ .|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----AVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----SEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----cEE-----------EEEECCCHHHH
Confidence 7642211111 0112333444445554 455555555554432 466 88999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 986 DEPTSGL----DARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 986 DEPtsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||+|+ |+..+..+++.++++.+ .|.|+|+++|+++ ++...+|++++|.+.|+
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~~ 206 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPGS 206 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC------
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCCC
Confidence 9999998 78899999999999874 5899999999986 68889999999976553
No 124
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.80 E-value=9.7e-23 Score=231.91 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=116.9
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
.++|+|+|+.|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 56899999999999999999999999999999999997 5877 356788766554 5888
Q ss_pred H-HHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 217 E-TLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 217 E-~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
| |+.|.... . + .....++.+ |++..| +..
T Consensus 171 ~~ni~~~~~~-------~---~--------------------------------~~~~~i~~~-L~~gld-------g~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------T---H--------------------------------ACWRYFDTY-LRNALD-------GYP 200 (305)
T ss_dssp TCSCEEEEEE-------C---H--------------------------------HHHHHHHHT-TTGGGG-------TCC
T ss_pred HHhhccCccc-------c---H--------------------------------HHHHHHHHH-hHccCC-------ccC
Confidence 7 77663110 0 0 011123332 333333 347
Q ss_pred CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeE
Q 046656 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 375 (1326)
|||||||| |||++.+|+||| ||+||+.+...+.. + +|.. +....+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH~~-~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HSRV-QTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TTTE-EEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hCCH-HHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999887752 1 3332 345689999 9999999
Q ss_pred EEEcChhhHHHHHHhc
Q 046656 376 VYQGPCELVLDFFESM 391 (1326)
Q Consensus 376 v~~G~~~~~~~~F~~l 391 (1326)
++.|+++++..+|.++
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999986666543
No 125
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.80 E-value=5.4e-22 Score=235.08 Aligned_cols=172 Identities=14% Similarity=0.138 Sum_probs=133.1
Q ss_pred ceeecceeEEEeCce--------------------EEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc
Q 046656 137 LTILKDVSGIIKPGR--------------------MTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP 196 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~--------------------~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~ 196 (1326)
+.+|+|||+.+++|+ +++|+||||||||||+|+|+|..+|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 568999999999999 99999999999999999999999987 899999987643
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHH
Q 046656 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLK 276 (1326)
Q Consensus 197 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (1326)
+ .+|++|++ .++++|++|++.++.. + ..++++++
T Consensus 109 ~--~~~v~q~~-~~~~ltv~D~~g~~~~------~-------------------------------------~~~~~~L~ 142 (413)
T 1tq4_A 109 M--ERHPYKHP-NIPNVVFWDLPGIGST------N-------------------------------------FPPDTYLE 142 (413)
T ss_dssp C--CCEEEECS-SCTTEEEEECCCGGGS------S-------------------------------------CCHHHHHH
T ss_pred e--eEEecccc-ccCCeeehHhhcccch------H-------------------------------------HHHHHHHH
Confidence 1 27899985 5778899988755310 0 01345677
Q ss_pred HcCCcccccccccCccccCCChh--hhHHHHHHHHhhc----------CCccceEecCCCCCCHHHHHHHHHHHHHHHH-
Q 046656 277 VLGLDVCADTLVGDEMVRGISGG--QKKRLTTGEMMVG----------PALALFMDEISNGLDSSTTFHIVNSLRQNIH- 343 (1326)
Q Consensus 277 ~lgL~~~~dt~vg~~~~~~LSGG--qkqRvsia~al~~----------~~~illLDEptsgLD~~t~~~i~~~l~~~~~- 343 (1326)
.++|.+... ... |||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~~------~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYDF------FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCSE------EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccCC------eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 888775422 122 9999 9999999999999 9999999999999999999999999998752
Q ss_pred ---hc---CCEEEEEEecChhh--HHhhCCeEE
Q 046656 344 ---IL---NGTAVISLLQPAPE--TYDLFDDII 368 (1326)
Q Consensus 344 ---~~---~~t~ii~i~q~~~~--~~~~~D~vi 368 (1326)
.. ..++++..+|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 21 23555555665554 777777764
No 126
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.80 E-value=1.2e-20 Score=199.67 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=100.1
Q ss_pred EEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT 926 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~ 926 (1326)
.++|+||||||||||+++|+|... |.++|.+... ...++.+||++|+. ++.+++ + +.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~--- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF--- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc---
Confidence 589999999999999999999753 2233332211 12345689999975 222322 1 0000
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH-----HhhCCcEEEEeC--CCCCCCHHHHHH
Q 046656 927 EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 999 (1326)
Q Consensus 927 ~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~a-----L~~~p~illLDE--PtsgLD~~~~~~ 999 (1326)
.. -.+..+..+ ..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 64 -~~----------------~~~~~~~~~-----~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 64 -FT----------------SKKLVGSYG-----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -CC----------------CSSEETTEE-----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -CC----------------ccccccccc-----cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 00 002233333 3599999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEec---CCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 1000 VMRTVKNTVETGRTVVCTIH---QPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 1000 i~~~l~~~~~~g~tvi~~~H---~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 9888875 4777888886 543 45566777 3567665443
No 127
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.79 E-value=9.9e-20 Score=211.64 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=70.4
Q ss_pred ccccCCChhhhHHHHHHHHhh----cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 291 EMVRGISGGQKKRLTTGEMMV----GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~----~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
..+..|||||||||+||++|+ .+|++++|||||++||+..+..+.+.++++. . +++++.++|. .++.+.+|+
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~-~~~vi~~tH~-~~~~~~~d~ 290 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--K-HTQFIVITHN-KIVMEAADL 290 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--T-TSEEEEECCC-TTGGGGCSE
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--C-CCeEEEEECC-HHHHhhCce
Confidence 345689999999999999997 6899999999999999999999999999873 2 4455667777 467889998
Q ss_pred E--EEecCCeE-EEEcChhh
Q 046656 367 I--ILLSDGQI-VYQGPCEL 383 (1326)
Q Consensus 367 v--ilL~~G~i-v~~G~~~~ 383 (1326)
+ ++|.+|+. +.....++
T Consensus 291 ~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 291 LHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEEESSSCEEEEECCC--
T ss_pred EEEEEEeCCEEEEEEEEcch
Confidence 7 78887754 44444444
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.78 E-value=4e-20 Score=194.66 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=55.9
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHH----------------HHHHHHHHHHHHHHhcCCEEEEEEecChh
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSS----------------TTFHIVNSLRQNIHILNGTAVISLLQPAP 358 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~----------------t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 358 (1326)
..||||||||+||+++..+|++++|||||++||+. ...++.+.++++... +.+++.++|+.+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~--g~tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE--GFRYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH--TCSEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc--CCcEEEEeCCHH
Confidence 46999999999999999999999999999999999 558888888877553 455666888887
Q ss_pred hHHh
Q 046656 359 ETYD 362 (1326)
Q Consensus 359 ~~~~ 362 (1326)
++..
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7654
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.78 E-value=2.4e-20 Score=197.26 Aligned_cols=149 Identities=13% Similarity=0.133 Sum_probs=101.6
Q ss_pred EEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhccCCcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 231 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 231 (1326)
.++|+||||||||||+++|+|.+. ..+.|... .+......++.++|++|+. ++.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999985 23344321 1111001245789999974 222222 10 00
Q ss_pred chhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHH--
Q 046656 232 YDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEM-- 309 (1326)
Q Consensus 232 ~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~a-- 309 (1326)
+.. .+..+ ++.+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~--~~~~~-~~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFT--SKKLV-GSYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCC--CSSEE-TTEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCC--ccccc-cccccCcCHHHHHHHHHHhhcc
Confidence 000 00111 23456799999999999996
Q ss_pred ---hhcCCccceEec--CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEe--cChhhHHhhCCeEEEecCCeEEE
Q 046656 310 ---MVGPALALFMDE--ISNGLDSSTTFHIVNSLRQNIHILNGTAVISLL--QPAPETYDLFDDIILLSDGQIVY 377 (1326)
Q Consensus 310 ---l~~~~~illLDE--ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~--q~~~~~~~~~D~vilL~~G~iv~ 377 (1326)
++.+|++++||| ||++||+.....+.+.+++ .+.++++++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999999888865 2455677664 688888888887 5667664
No 130
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.76 E-value=1.7e-22 Score=229.92 Aligned_cols=167 Identities=13% Similarity=0.166 Sum_probs=122.4
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++||++.++ +.+|+|+|++|++|++++|+||||||||||+++|+|.. +|+|.
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~------- 155 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL------- 155 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE-------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE-------
Confidence 67788887663 24899999999999999999999999999999999976 46663
Q ss_pred cccccceEEEeecCCCCCCCCCHHH-HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 QETFTRISGYCEQNDIHSPLVTVYE-SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~~~~~~~~gyv~Q~~~~~~~~Tv~E-~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
+|++|++.++. .|++| |+.|.. +.+. .+++.++.+ |.+..+ | ..|||||||
T Consensus 156 --------~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQ 207 (305)
T 2v9p_A 156 --------SFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKH 207 (305)
T ss_dssp --------CGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSS
T ss_pred --------EEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHH
Confidence 45677766554 46776 765531 1111 245556653 333333 2 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
| ||||+++|+||| ||+||+.++..|.. .+|+++ ..+.+|++ +|++ |++++.|+.
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~- 261 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD- 261 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH-
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH-
Confidence 9 999999999999 99999999888752 189876 35779999 9985 799998875
Q ss_pred CChhhHHHHHh
Q 046656 1049 SNSSDLISYLQ 1059 (1326)
Q Consensus 1049 ~~~~~~~~~f~ 1059 (1326)
+++..+|.
T Consensus 262 ---~el~~~y~ 269 (305)
T 2v9p_A 262 ---ADWKSFFV 269 (305)
T ss_dssp ---HHHHHHHH
T ss_pred ---HHHHHHHH
Confidence 44544444
No 131
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.75 E-value=3.9e-20 Score=211.86 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=119.5
Q ss_pred eecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CC
Q 046656 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-------TF--TRISGYCEQNDI-HS 907 (1326)
Q Consensus 838 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~ 907 (1326)
++++|+.+++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 467899999999999999999999999999999765 3479999999876431 12 235899999988 88
Q ss_pred CCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEE
Q 046656 908 PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS--IIFM 985 (1326)
Q Consensus 908 ~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~--illL 985 (1326)
+..|++|++.+... + ..+ ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~---~~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E---GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T---TCS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c---CCc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88999999987532 1 111 134566777766666553 488 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecC
Q 046656 986 DEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQ 1020 (1326)
Q Consensus 986 DEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1020 (1326)
| ||+|||+..+. +++. +.|.|+|++||.
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCC
Confidence 9 99999987552 3444 348999999994
No 132
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.75 E-value=1.7e-20 Score=211.75 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=96.9
Q ss_pred EEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVD 929 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~ 929 (1326)
.++|+||||||||||+|+|+|... +.+|+|.++|.+......++.+||++|++.+.+.+||.|++.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 489999999999999999999876 4589999999887555556789999999999999999999988653221 111
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 046656 930 SETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009 (1326)
Q Consensus 930 ~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1009 (1326)
. +.+.+.++ .+..+...+ .||||||||++|||+++. ++||||||.|||+.. .+.++.+.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 12333332 334444443 599999999999999875 999999999999886 345555555
Q ss_pred cCCEEEEEecCC
Q 046656 1010 TGRTVVCTIHQP 1021 (1326)
Q Consensus 1010 ~g~tvi~~~H~~ 1021 (1326)
. .+||+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999964
No 133
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.74 E-value=2.7e-19 Score=207.82 Aligned_cols=130 Identities=18% Similarity=0.125 Sum_probs=104.2
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-TFTRISGYCEQNDIHSPLVTVYES 915 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~~Tv~E~ 915 (1326)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+.-.. ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999998764 489999998642110 1122222221
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
+ |||+||++||++|..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 996 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
.+++.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 356677776543458999999987 56789999999876
No 134
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.73 E-value=1.1e-17 Score=195.37 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=75.3
Q ss_pred Ccccc-CCChhhhHHHHHHHHhh---------cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhh
Q 046656 290 DEMVR-GISGGQKKRLTTGEMMV---------GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPE 359 (1326)
Q Consensus 290 ~~~~~-~LSGGqkqRvsia~al~---------~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 359 (1326)
+..++ .+|||||||++||++|+ ++|+||||||||++||+..+..+++.++++ . .++|+++|. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 44566 69999999999999999 899999999999999999999999999874 2 567777774 33
Q ss_pred HHhhCCeEEEecCCeEEEEcChhhH
Q 046656 360 TYDLFDDIILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 360 ~~~~~D~vilL~~G~iv~~G~~~~~ 384 (1326)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
No 135
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.73 E-value=2.2e-19 Score=205.63 Aligned_cols=174 Identities=15% Similarity=0.150 Sum_probs=126.1
Q ss_pred ecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---------ccceEEEEccCCC-C
Q 046656 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---------PQRTAAYISQHDV-H 209 (1326)
Q Consensus 140 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~d~-~ 209 (1326)
++++|+.+++|++++|+||||||||||++.|+|.++|. +|+|.++|.+..... .++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999876 899999998865321 1235899999987 8
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+|++.++... + ++ ..+++.+|+.+..+.
T Consensus 167 ~~~~~v~e~l~~~~~~-~----~d--------------------------------------~~lldt~gl~~~~~~--- 200 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYS--- 200 (302)
T ss_dssp CHHHHHHHHHHHHHHT-T----CS--------------------------------------EEEECCCCCSSCCHH---
T ss_pred CHHHHHHHHHHHHHHc-C----Cc--------------------------------------chHHhcCCCCcchhH---
Confidence 8899999999875321 1 00 001334566554443
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCc--cceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC---------hh
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPAL--ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP---------AP 358 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~--illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~---------~~ 358 (1326)
.+..|| |||++||++++.+|+ +|+|| ||+|||+.... +++.+..+.+ ++.++|. ..
T Consensus 201 --~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t-~iiiThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 201 --LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGIT-GLILTKLDGSARGGCVVS 267 (302)
T ss_dssp --HHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCC-EEEEECCSSCSCTHHHHH
T ss_pred --HHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCC-EEEEeCCCCCCccChhee
Confidence 344689 999999999999999 99999 99999997542 3333223444 4446662 22
Q ss_pred hHHhhCCeEEEecCCeE
Q 046656 359 ETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 359 ~~~~~~D~vilL~~G~i 375 (1326)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 33455678888888864
No 136
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.73 E-value=1.5e-21 Score=214.03 Aligned_cols=178 Identities=11% Similarity=-0.007 Sum_probs=112.1
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc----ccccceEEEeecCCCCCCCCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ----ETFTRISGYCEQNDIHSPLVT 911 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~~T 911 (1326)
.-|+||||+|++|++++|+||||||||||+++|+|.. + |+|.+ |.+... ...++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 3699999999999999999999999999999999976 2 77888 665321 123456799999865544332
Q ss_pred H-HHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCcEEE
Q 046656 912 V-YESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTI-----AVELVANPSIIF 984 (1326)
Q Consensus 912 v-~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~i-----a~aL~~~p~ill 984 (1326)
. .+++.+ ..+..+ ...+ ++.++++++..++. ..+ ..||||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~~-~~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEY-DNYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEE-EEETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhh-hhcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 111111 000100 0111 12366677654331 111 2589999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-------cCCEEEEEecCCcHHHHHHhceeeE
Q 046656 985 MDEPTSGLDARAAAIVMRTVKNTVE-------TGRTVVCTIHQPSIDIFEAFDELFL 1034 (1326)
Q Consensus 985 LDEPtsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~~D~v~~ 1034 (1326)
|||||+++|..+...|.+.+++..+ .+.+.|++.|++. +.+...|+++.
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii~ 206 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYLL 206 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHHH
Confidence 9999999999999999888877643 3456666677654 45555555543
No 137
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.73 E-value=2.4e-19 Score=202.28 Aligned_cols=147 Identities=13% Similarity=0.173 Sum_probs=88.5
Q ss_pred EEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhccCCcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 231 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 231 (1326)
.++|+||||||||||+|+|+|...|+ +|+|.++|.++.....++.++|++|++.+++.+||.||+.|+....... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~-~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN-C 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT-C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH-H
Confidence 47899999999999999999999887 8999999988755444578999999999999999999999875432110 0
Q ss_pred chhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhh
Q 046656 232 YDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV 311 (1326)
Q Consensus 232 ~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~ 311 (1326)
++. +..+ +. ....+ .....|||||||||++||+++
T Consensus 80 ~~~------------------i~~~------------------~~----~~~~~-----~~~~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 WEP------------------IEKY------------------IN----EQYEK-----FLKEEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp SHH------------------HHHH------------------HH----HHHHH-----HHHHHSCTTCCSSCCCCSCCE
T ss_pred HHH------------------HHHH------------------HH----HHHHh-----hhHHhcCcccchhhhhheeee
Confidence 000 0000 00 01111 122359999999999999987
Q ss_pred cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCh
Q 046656 312 GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPA 357 (1326)
Q Consensus 312 ~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~ 357 (1326)
. +++||||+.|||+.. .+.++.+.. . .++|++ .+..
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~V-i~K~ 150 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPV-IAKA 150 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEE-ETTG
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEE-Eecc
Confidence 5 999999999999976 334444432 2 455554 4443
No 138
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.72 E-value=3.9e-19 Score=207.07 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=120.2
Q ss_pred ecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CCC
Q 046656 839 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-------TF--TRISGYCEQNDI-HSP 908 (1326)
Q Consensus 839 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~~ 908 (1326)
+.+|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46788899999999999999999999999999765 3479999999876431 12 245899999988 888
Q ss_pred CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEe
Q 046656 909 LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS--IIFMD 986 (1326)
Q Consensus 909 ~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~--illLD 986 (1326)
..|++|++.++.. + ..+ ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~---~~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E---GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T---TCS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C---CCH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999987532 1 111 134566777766665553 488 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecC
Q 046656 987 EPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQ 1020 (1326)
Q Consensus 987 EPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1020 (1326)
||+|||+.++. +++.+ .|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999987653 34443 48999999994
No 139
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.72 E-value=4.5e-17 Score=190.59 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=68.4
Q ss_pred CCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceee
Q 046656 960 SGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELF 1033 (1326)
Q Consensus 960 ~~LSgGqrq------rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~ 1033 (1326)
..||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.+.|.|||++||++ ++.+.+|+++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~~ 324 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVI 324 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEEE
Confidence 469999999 67788888889999999999999999999999999999877789999999995 4678899999
Q ss_pred EEec
Q 046656 1034 LMKR 1037 (1326)
Q Consensus 1034 ~l~~ 1037 (1326)
+|..
T Consensus 325 ~l~~ 328 (339)
T 3qkt_A 325 RISL 328 (339)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9863
No 140
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.71 E-value=6.3e-21 Score=209.01 Aligned_cols=173 Identities=13% Similarity=0.054 Sum_probs=104.7
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCCCCCC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 213 (1326)
.-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.+.....+ ++.++|++|++..++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 4699999999999999999999999999999999987 4 77888 776543222 35688999986555433
Q ss_pred CH-HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 214 TV-RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 214 TV-~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+. .+++.+. ... ...|.... ..++++++... ...+.
T Consensus 84 ~~~~~~l~~~-~~~--~~~~g~~~--------------------------------~~i~~~l~~~~-----~~il~--- 120 (218)
T 1z6g_A 84 LKNEDFLEYD-NYA--NNFYGTLK--------------------------------SEYDKAKEQNK-----ICLFE--- 120 (218)
T ss_dssp HHTTCEEEEE-EET--TEEEEEEH--------------------------------HHHHHHHHTTC-----EEEEE---
T ss_pred hhccchhhhh-hcc--cccCCCcH--------------------------------HHHHHHHhCCC-----cEEEE---
Confidence 21 1111110 000 00010000 01222333221 11111
Q ss_pred ccCCChhhhHHHHH-----HHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 293 VRGISGGQKKRLTT-----GEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 293 ~~~LSGGqkqRvsi-----a~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.+.+.... .+ +.| ...||.|
T Consensus 121 -~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~~d~i 188 (218)
T 1z6g_A 121 -MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLNFNLS 188 (218)
T ss_dssp -ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSCCSEE
T ss_pred -ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccCCCEE
Confidence 3699999999999 88999999999999999999999999999888775432 11 122 2456777
Q ss_pred EEecC
Q 046656 368 ILLSD 372 (1326)
Q Consensus 368 ilL~~ 372 (1326)
+++++
T Consensus 189 iv~~~ 193 (218)
T 1z6g_A 189 IINDD 193 (218)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 66654
No 141
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=2.9e-19 Score=214.59 Aligned_cols=174 Identities=16% Similarity=0.089 Sum_probs=136.0
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCc---cCCc--------ccccceEEEeecC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY---PKKQ--------ETFTRISGYCEQN 903 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~gyv~Q~ 903 (1326)
..+|+++ +.|.+|++++|+||||||||||+++|+|...+ ..|.|.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4599999 99999999999999999999999999998764 5899999997 3321 2245779999995
Q ss_pred -CCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 046656 904 -DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSI 982 (1326)
Q Consensus 904 -~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~i 982 (1326)
+...+.+|+.+++.+.+....... + ....+.|.. ..||+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~-------~---------~v~~~ld~l------~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRG-------Q---------HVLLIMDSL------TRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTT-------C---------EEEEEEECH------HHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCC-------C---------CHHHHHHhH------HHHHHHH-HHHHHH---hCCCcc
Confidence 455677899999987654321100 0 011112222 3599999 999999 888988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---c-CC-----EEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 983 IFMDEPTSGLDARAAAIVMRTVKNTVE---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 983 llLDEPtsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|+|||+.+...+.+.++++.+ + |. ||++++||++ ...+|++++|.+ |+++..|+.
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999999865 3 64 9999999987 467899999985 799987763
No 142
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=2.4e-19 Score=215.31 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=139.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCc---cCCCC--------CccceEEEEc
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH---DMNEF--------VPQRTAAYIS 204 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~--------~~~~~~~yv~ 204 (1326)
...+|+++ +.+.+|++++|+|||||||||||++|+|..+++ .|.|.++|. ++.++ ..++.++||+
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 46699999 999999999999999999999999999999987 899999998 45432 1246799999
Q ss_pred cC-CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccc
Q 046656 205 QH-DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVC 283 (1326)
Q Consensus 205 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 283 (1326)
|+ +..++.+||.+|+.+.++.... .. .+ ....
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~----~~-----------------------------v~~~ 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------RG----QH-----------------------------VLLI 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------TT----CE-----------------------------EEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------CC----CC-----------------------------HHHH
Confidence 95 5667788999999886543110 00 00 0000
Q ss_pred ccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHh--cCCE-----EEEEEecC
Q 046656 284 ADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHI--LNGT-----AVISLLQP 356 (1326)
Q Consensus 284 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~--~~~t-----~ii~i~q~ 356 (1326)
.| .+..+|||| |||+|| +.+|++ |+|||+.+...+.+.+.++.+. .++. +|++.+|+
T Consensus 253 ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 11 134599999 999999 788887 9999999999999999886442 2253 66767788
Q ss_pred hhhHHhhCCeEEEecCCeEEEEcChhhH
Q 046656 357 APETYDLFDDIILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 357 ~~~~~~~~D~vilL~~G~iv~~G~~~~~ 384 (1326)
.. ...+|++++|.+|+++..|+..++
T Consensus 317 l~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 76 678999999999999999988765
No 143
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.70 E-value=3.7e-20 Score=201.33 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=111.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
.++|+| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457788 68999999999999999999999999999852 23333333322211 1235689999997778888888
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHH------HHHcCCcccccccccC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYY------LKVLGLDVCADTLVGD 290 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt~vg~ 290 (1326)
|++.+.....+....|... +.+ ....+++. ++.+|+....+
T Consensus 83 ~~l~~~~~~~~n~~~~g~~----~~~------------------------~~~~~~~~~~~~~~l~~~gl~~~~~----- 129 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTL----AQP------------------------VRAAAATGVPVLIEVDLAGARAIKK----- 129 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEE----HHH------------------------HHHHHHHTCCEEEECCHHHHHHHHH-----
T ss_pred CCceeehhhcCchhhcCCc----HHH------------------------HHHHHHcCCeEEEEeCHHHHHHHHH-----
Confidence 7764322111000001000 000 00011111 22233332222
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCC----CHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGL----DSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgL----D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
..++.|| +|+.+|++++|||||+|+ |+..+..+.+.++++.+.. +.+++.++|+.+++..+||+
T Consensus 130 ~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 130 TMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQG-DFDKVVVNRRLESACAELVS 197 (207)
T ss_dssp HCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGG-GSSEEEECSSHHHHHHHHHH
T ss_pred hcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhc-cCcEEEECCCHHHHHHHHHH
Confidence 2233466 899999999999999998 7889999999999886533 45566689999999999999
Q ss_pred EEEec
Q 046656 367 IILLS 371 (1326)
Q Consensus 367 vilL~ 371 (1326)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
No 144
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.69 E-value=1.9e-18 Score=201.28 Aligned_cols=173 Identities=15% Similarity=0.154 Sum_probs=126.4
Q ss_pred cceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---------ccceEEEEccCCC-CC
Q 046656 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---------PQRTAAYISQHDV-HI 210 (1326)
Q Consensus 141 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 210 (1326)
+.+|+.+++|++++|+||||||||||++.|+|.+++. +|+|.++|.+..... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999999876 899999998864321 1246899999987 88
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+|++.++... + ++ ..+++.+|+.+..+.
T Consensus 225 p~~tv~e~l~~~~~~-~----~d--------------------------------------~~lldt~Gl~~~~~~---- 257 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYS---- 257 (359)
T ss_dssp HHHHHHHHHHHHHHT-T----CS--------------------------------------EEEEECCCCSSCCHH----
T ss_pred hhhhHHHHHHHHHhC-C----CH--------------------------------------HHHHHhcCCChhhhh----
Confidence 899999999885321 0 00 001234555544433
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCc--cceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC---------hhh
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPAL--ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP---------APE 359 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~--illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~---------~~~ 359 (1326)
.+..|| |||++||+++..+|+ +|+|| ||+|||+.... +.+....+.+ +++++|. ...
T Consensus 258 -~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t-~iiiThlD~~~~gG~~lsi 325 (359)
T 2og2_A 258 -LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGIT-GLILTKLDGSARGGCVVSV 325 (359)
T ss_dssp -HHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCC-EEEEESCTTCSCTHHHHHH
T ss_pred -HHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCe-EEEEecCcccccccHHHHH
Confidence 344689 999999999999999 99999 99999997653 2332223444 4446662 223
Q ss_pred HHhhCCeEEEecCCeE
Q 046656 360 TYDLFDDIILLSDGQI 375 (1326)
Q Consensus 360 ~~~~~D~vilL~~G~i 375 (1326)
.....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 3455677888877763
No 145
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.69 E-value=4.3e-17 Score=190.28 Aligned_cols=79 Identities=11% Similarity=0.145 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhce
Q 046656 961 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDE 1031 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1031 (1326)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 59999999999999999 8999999999999999999999999998763 799999994 3 2 7899
Q ss_pred eeEEecCcEEEEEcCCC
Q 046656 1032 LFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 1032 v~~l~~gg~~~~~G~~~ 1048 (1326)
+++|++ |+++..|+..
T Consensus 337 i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEE 352 (359)
T ss_dssp EEEEET-TEEEECCCTT
T ss_pred EEEEEC-CEEEecCCHH
Confidence 999985 7999988864
No 146
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.69 E-value=4.4e-18 Score=195.57 Aligned_cols=182 Identities=15% Similarity=0.140 Sum_probs=116.0
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEE-EEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISG-NITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
.+|+++++.+++|++++|+||||||||||++.|+|...+ .+| .|.+.+.........+.+.++.+... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 479999999999999999999999999999999996542 235 56443333222222222233333221 12333
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH-HHHHHHHHHHhhCCcEEEEeCCCC---
Q 046656 915 SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS--- 990 (1326)
Q Consensus 915 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq-rqrl~ia~aL~~~p~illLDEPts--- 990 (1326)
++.... + +.++..+.++++++..++. +.+. ...+|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 443221 1 1122223344444322221 1111 12489999 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhc-CCEEEEEecCCc-H--------------------HHHHHhceeeEEecC
Q 046656 991 G---LDA-RAAAIVMRTVKNTVET-GRTVVCTIHQPS-I--------------------DIFEAFDELFLMKRG 1038 (1326)
Q Consensus 991 g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~~-~--------------------~~~~~~D~v~~l~~g 1038 (1326)
+ +|. .....+++.|++++++ |+|||+++|+.. . .+...+|++++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6677899999998754 999999999952 1 466789999999975
No 147
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.67 E-value=5.9e-20 Score=211.31 Aligned_cols=159 Identities=9% Similarity=-0.007 Sum_probs=112.8
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhc
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 924 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~ 924 (1326)
+++|+++||+||||||||||+++|+|...+ . +|. +.++|++|++.+++. |++|++.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 899999999999999999999999997653 1 121 357999999998888 99999865221
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 046656 925 RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004 (1326)
Q Consensus 925 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l 1004 (1326)
.+.+.....+.+.++++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 11122222345677888887 44444443 2599999999999999999999999999999998521 112
Q ss_pred HHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 1005 KNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 1005 ~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
.++. + .+|++.|+.+.......+|.+.+.++
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 2222 3 34666676554444456777766543
No 148
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.67 E-value=4.3e-17 Score=201.56 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=69.9
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 960 SGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 960 ~~L-SgGqrqrl~ia~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..| |||||||++||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||++||++. +...+|++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 356 999999999999999999 99999999999999999999999999987 899999999975 556799999997
Q ss_pred cC
Q 046656 1037 RG 1038 (1326)
Q Consensus 1037 ~g 1038 (1326)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 149
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.66 E-value=2.1e-18 Score=198.46 Aligned_cols=128 Identities=10% Similarity=0.023 Sum_probs=95.9
Q ss_pred ceeEE-EeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHH
Q 046656 142 DVSGI-IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLA 220 (1326)
Q Consensus 142 ~vs~~-i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 220 (1326)
|+|.. +++|++++|+||||||||||+++|+|.++|. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 45543 7899999999999999999999999999874 332 368999999998888 9999986
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
+... .+....++ .....+.++.++ ....+. .+..+||||
T Consensus 143 ~~~~-~g~~~~~d----------------------------------~~~~~~~L~~l~-~~~~~~-----~~~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPESYN----------------------------------RRALMRFVTSVK-SGSDYA-----CAPVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGGBC----------------------------------HHHHHHHHHHHH-TTCSCE-----EEEEEETTT
T ss_pred HHHh-cCCChHHH----------------------------------HHHHHHHHHHhC-CCcccC-----CcccCChhh
Confidence 5321 11110000 012344566666 333333 344799999
Q ss_pred hHHHHHHHHhhcCCccceEecCCCCCCH
Q 046656 301 KKRLTTGEMMVGPALALFMDEISNGLDS 328 (1326)
Q Consensus 301 kqRvsia~al~~~~~illLDEptsgLD~ 328 (1326)
|||+++|++++.+|+|+|||||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
No 150
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.65 E-value=1.5e-15 Score=177.67 Aligned_cols=81 Identities=23% Similarity=0.326 Sum_probs=67.7
Q ss_pred ccccCCChhhhH------HHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 291 EMVRGISGGQKK------RLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 291 ~~~~~LSGGqkq------Rvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
..+..||||||| |+++|++++.+|++|+|||||+|||+..+..+++.|+++.. .+ .+|++++|+ +++.+.|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~-~~vi~~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KI-PQVILVSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GS-SEEEEEESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC-CEEEEEECh-HHHHHhC
Confidence 456789999999 67788889999999999999999999999999999998754 23 455557787 5788999
Q ss_pred CeEEEec--CCe
Q 046656 365 DDIILLS--DGQ 374 (1326)
Q Consensus 365 D~vilL~--~G~ 374 (1326)
|+|++|. +|.
T Consensus 321 d~~~~l~~~~g~ 332 (339)
T 3qkt_A 321 DHVIRISLENGS 332 (339)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEecCCc
Confidence 9999985 453
No 151
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.65 E-value=1.4e-17 Score=193.37 Aligned_cols=133 Identities=13% Similarity=0.167 Sum_probs=100.3
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRET 218 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 218 (1326)
+++++|+.+++|++++|+|||||||||||++|+|.++|+ +|.|+++|.+ +.. .+.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~--------------~~~------ 214 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIV--------------FKH------ 214 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCC--------------CSS------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccc--------------ccc------
Confidence 789999999999999999999999999999999999987 8999999853 110 000
Q ss_pred HHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCCh
Q 046656 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISG 298 (1326)
Q Consensus 219 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 298 (1326)
.+ .. +++ + .+ |
T Consensus 215 ----~~-----~~----------------------------------------------i~~-------~-----~g--g 225 (330)
T 2pt7_A 215 ----HK-----NY----------------------------------------------TQL-------F-----FG--G 225 (330)
T ss_dssp ----CS-----SE----------------------------------------------EEE-------E-----CB--T
T ss_pred ----ch-----hE----------------------------------------------EEE-------E-----eC--C
Confidence 00 00 000 0 01 8
Q ss_pred hhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeE
Q 046656 299 GQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 299 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 375 (1326)
||+||++||++|..+|++++|||||+. ++.+.|+.+. .+++++++++|... +.+.+|++++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~--~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC--SGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH--TTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh--cCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3456666653 24444444556554 7888999999988863
No 152
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.64 E-value=4.8e-16 Score=192.16 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=67.4
Q ss_pred cccCC-ChhhhHHHHHHHHhhcCC--ccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 292 MVRGI-SGGQKKRLTTGEMMVGPA--LALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 292 ~~~~L-SGGqkqRvsia~al~~~~--~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
.+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|++++. +.+|++++|... +...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~---~~~vi~itH~~~-~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD---TRQVLVVTHLAQ-IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH---HSEEEEECCCHH-HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC---CCEEEEEecCHH-HHHhCCEEE
Confidence 35567 999999999999999999 99999999999999999999999999864 345666788854 556799999
Q ss_pred EecCC
Q 046656 369 LLSDG 373 (1326)
Q Consensus 369 lL~~G 373 (1326)
+|.+|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99655
No 153
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.62 E-value=6.6e-16 Score=157.46 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHH------HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceee
Q 046656 960 SGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELF 1033 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia------~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~ 1033 (1326)
..||||||||++|| ++|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.+|+++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ii 133 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVI 133 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEEE
Confidence 46999999999886 899999999999999999999999999999999877799999999997 3567899999
Q ss_pred EEe
Q 046656 1034 LMK 1036 (1326)
Q Consensus 1034 ~l~ 1036 (1326)
+|+
T Consensus 134 ~l~ 136 (148)
T 1f2t_B 134 RIS 136 (148)
T ss_dssp EEE
T ss_pred EEE
Confidence 994
No 154
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.62 E-value=1e-16 Score=184.08 Aligned_cols=185 Identities=14% Similarity=0.056 Sum_probs=110.9
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceee-EEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSG-RVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
..+|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.+.+.+.......+.+.++.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45899999999999999999999999999999999998765 46 56544322211000011111111100 011
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
.+++..+ . ....+....++.+++..++. + .+....
T Consensus 95 ~~~l~~~--------------~------------------------~~~~~~~~~~~~~l~~~~l~------i-~~~~~~ 129 (296)
T 1cr0_A 95 SDSLKRE--------------I------------------------IENGKFDQWFDELFGNDTFH------L-YDSFAE 129 (296)
T ss_dssp CHHHHHH--------------H------------------------HHHTHHHHHHHHHHSSSCEE------E-ECCCCS
T ss_pred ccccccC--------------C------------------------CCHHHHHHHHHHHhccCCEE------E-ECCCCC
Confidence 1111110 0 00011112233333222221 1 112235
Q ss_pred CChhh-hHHHHHHHHhhcCCccceEecCCC---C---CCH-HHHHHHHHHHHHHHHhcCCEEEEEEecCh--h-------
Q 046656 296 ISGGQ-KKRLTTGEMMVGPALALFMDEISN---G---LDS-STTFHIVNSLRQNIHILNGTAVISLLQPA--P------- 358 (1326)
Q Consensus 296 LSGGq-kqRvsia~al~~~~~illLDEpts---g---LD~-~t~~~i~~~l~~~~~~~~~t~ii~i~q~~--~------- 358 (1326)
+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.+ |+.++|.. .
T Consensus 130 ~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~-vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 130 AETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVV-LVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp CCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCE-EEEEEECC----------
T ss_pred CCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCe-EEEEEecCcccccccccc
Confidence 88898 67776 999999999999999999 5 455 66788999999988755544 55566663 3
Q ss_pred -------------hHHhhCCeEEEecCCeE
Q 046656 359 -------------ETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 359 -------------~~~~~~D~vilL~~G~i 375 (1326)
.+...||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 155
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.62 E-value=1.6e-16 Score=178.23 Aligned_cols=131 Identities=19% Similarity=0.245 Sum_probs=97.5
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCee-EEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-SGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYES 915 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~ 915 (1326)
+|+++| +++|++++|+||||||||||+++|+|... +. +|+|.++|.++... ++...++++|.
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~-~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYV-FKHKKSIVNQR------------ 78 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSC-CCCSSSEEEEE------------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceee-cCCcceeeeHH------------
Confidence 789999 89999999999999999999999999765 34 79999998764311 11111122110
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
.+++.. ..| |++||++|..+|++|++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 112211 123 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 996 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
+...+ ++. ++.|.+|++++|+.+ ....+||++.|..
T Consensus 112 ~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 86544 333 356999999999976 5678999999864
No 156
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.61 E-value=8.6e-17 Score=210.57 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=112.3
Q ss_pred eEeeecceeEEeC-------CeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEE-EeecCCCC
Q 046656 835 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISG-YCEQNDIH 906 (1326)
Q Consensus 835 ~~vL~~vs~~i~~-------Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~Q~~~~ 906 (1326)
..+++|+++.+++ |++++|+|||||||||||+++ |... + ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~-----------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V-----------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H-----------------HHTTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H-----------------HhheeEEeccCcC-
Confidence 4699999999987 999999999999999999999 8653 1 12244 9999753
Q ss_pred CCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 046656 907 SPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 986 (1326)
Q Consensus 907 ~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 986 (1326)
.+||.|++.. + +|+.+.... +.+.+|+|+++ +++|++++.+|+++|||
T Consensus 828 --~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp --EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred --CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 4555555421 1 111111111 11347777665 99999999999999999
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEE--EEcC
Q 046656 987 EPTSGLDARA-AAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI--YVGP 1046 (1326)
Q Consensus 987 EPtsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~--~~G~ 1046 (1326)
|||+|+|+.. ...++..|+.+.++ |+++|++||+++ .+...+|++.+++ |++. +.|+
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~ 936 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENE 936 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC----
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecC
Confidence 9999999987 46678899998876 999999999975 3445689988875 6777 4454
No 157
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.61 E-value=4e-17 Score=182.28 Aligned_cols=164 Identities=17% Similarity=0.181 Sum_probs=103.0
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhc--CCCCCCeeEEEEEEcCccCCcc--cccceEEEeecCCCCCCCCCHHHHHHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYISGNITISGYPKKQE--TFTRISGYCEQNDIHSPLVTVYESLLY 918 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~--g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~Q~~~~~~~~Tv~E~l~f 918 (1326)
+.|++|++++|+||||||||||+++|+ |... ...|.+.+++...... ...+.+||.+|+....+.+++.+....
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 479999999999999999999999999 5522 1246677776543211 112335666665433333443332211
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC-----
Q 046656 919 SAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----- 993 (1326)
Q Consensus 919 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD----- 993 (1326)
.... . ..+. .... ...+.++......+..-..+|++++|||||++||
T Consensus 103 ~~~~------~-------~~~~----------~~~~-----~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~ 154 (251)
T 2ehv_A 103 VVGL------P-------SEEK----------FVLE-----DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEE 154 (251)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSG
T ss_pred cccc------c-------cccc----------eecc-----CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCH
Confidence 0000 0 0000 0000 1134455555555555568999999999999998
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCcHHH---------HHHh-ceeeEEec
Q 046656 994 ARAAAIVMRTVKNTVETGRTVVCTIHQPSIDI---------FEAF-DELFLMKR 1037 (1326)
Q Consensus 994 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~---------~~~~-D~v~~l~~ 1037 (1326)
+..+..+.++++.+++.|+|||+++|++. +. ...+ |++++|++
T Consensus 155 ~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 155 RKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEee
Confidence 67777799999998888999999999986 34 4678 99999974
No 158
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.60 E-value=2.6e-17 Score=183.77 Aligned_cols=155 Identities=8% Similarity=0.003 Sum_probs=97.9
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTV 912 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv 912 (1326)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4467999999999999999999999999999999999854 222222 2355689999985 6677899
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 046656 913 YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992 (1326)
Q Consensus 913 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL 992 (1326)
.|++.+........+ +.....+.+.+.++.+ .+..+..+ ..||+||+||+.+ ++++.+|++++||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876432211111 1111122244445543 23333333 3599999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 046656 993 DARAAAIVMRTVKNTVETGRTVVCTIHQ 1020 (1326)
Q Consensus 993 D~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1020 (1326)
|.. +.++ .+.||++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 864 2222 37899999996
No 159
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.60 E-value=1.3e-15 Score=196.92 Aligned_cols=149 Identities=16% Similarity=0.094 Sum_probs=107.1
Q ss_pred ceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhc--------CCCCCCeeEEEEEEcCccCCcccccceEEEeecCCC
Q 046656 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--------GRKTGGYISGNITISGYPKKQETFTRISGYCEQNDI 905 (1326)
Q Consensus 834 ~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~--------g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~ 905 (1326)
.+.+++|+++.+++|++++|+|||||||||||++++ |..-+ ..+.. ++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~~---------------~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESAE---------------VSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEEE---------------EECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--ccccc---------------chHH---HH
Confidence 346999999999999999999999999999999994 32211 11110 1100 00
Q ss_pred CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCcEE
Q 046656 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVEL--VANPSII 983 (1326)
Q Consensus 906 ~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL--~~~p~il 983 (1326)
++..+++.+ .+ ..++|++++++..+|++| +.+|+++
T Consensus 708 ----------------------------------i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 ----------------------------------ILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ----------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ----------------------------------HHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 001111111 11 125888888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 984 FMDEPTSGLDARAAAIV-MRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 984 lLDEPtsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||||||+|+|+.....+ +..++.+.+ .|+|+|++||+. ++.+.+|++..+.+ |++.+.++.
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 99999999999988777 667777775 499999999995 46788999999986 788887764
No 160
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.60 E-value=5.5e-17 Score=189.07 Aligned_cols=173 Identities=14% Similarity=0.166 Sum_probs=121.6
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc----------ccccceEEEeecCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ----------ETFTRISGYCEQND 904 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------~~~~~~~gyv~Q~~ 904 (1326)
..+|+++ +.|.+||+++|+|+||||||||+++|+|...+ ..|.|.+.|.+... ..+.+.+.++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4599999 99999999999999999999999999998764 47999998864211 11345577777754
Q ss_pred CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 046656 905 IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK--PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSI 982 (1326)
Q Consensus 905 ~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~i 982 (1326)
. .+.+.+.-... ...+.+.....+-. .+.|. ...||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~~------------~~~~ae~~~~~~~~vl~~ld~------~~~lS~g~-r~v~la---l~~p~~ 188 (347)
T 2obl_A 136 R-----PALERMKAAFT------------ATTIAEYFRDQGKNVLLMMDS------VTRYARAA-RDVGLA---SGEPDV 188 (347)
T ss_dssp S-----CHHHHHHHHHH------------HHHHHHHHHTTTCEEEEEEET------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred C-----CHHHHHHHHHH------------HHHHHHHHHhccccHHHHHhh------HHHHHHHH-HHHHHH---cCCCCc
Confidence 2 22222211000 00011111110100 00121 23599999 899999 688887
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh--cCC-----EEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 983 IFMDEPTSGLDARAAAIVMRTVKNTVE--TGR-----TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 983 llLDEPtsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|+|||+.....+.++++++.+ .|. ||++++||.+ ...+|++++|.+ |+++..|++
T Consensus 189 ------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 ------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp ------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred ------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999864 477 9999999987 356999999985 799988764
No 161
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.59 E-value=1.7e-16 Score=177.02 Aligned_cols=177 Identities=15% Similarity=0.052 Sum_probs=102.2
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 214 (1326)
+.+++|+|+|+.+++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 3566999999999999999999999999999999999976 222232 1246789999985 677899
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
+.|++.+.......... .. .+. ......++.+ .+..+ ....
T Consensus 75 ~~~~~~~~~~~~~~~~~----~~-------------~~~---------------~~~~~~L~~l--~~~~~-----~~~~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP----DA-------------FDN---------------DLMHRTLKNI--VEGKT-----VEVP 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG----GG-------------BCH---------------HHHHHHHHHH--HTTCC-----EEEC
T ss_pred HhHhhhhhccCCCCCCc----cc-------------ccH---------------HHHHHHHHHH--HCCCC-----eecc
Confidence 99999875432211100 00 000 0011122222 22333 2345
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHh-hCCeEEEecCC
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYD-LFDDIILLSDG 373 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~-~~D~vilL~~G 373 (1326)
.+|+||+||+.+ ++++.+|+++++|||....|.. +.++ . +.+|+..+|+...+.+ +++++ .+|
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~-~~~i~v~th~~~~~~r~~~r~~---~~G 179 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---F-HLRLFVDTDSDVRLSRRVLRDV---RRG 179 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---C-SEEEEEECCHHHHHHHHHHHHT---C--
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---c-CeEEEEECCHHHHHHHHHHHHH---HcC
Confidence 799999999987 5788899999999998888753 2221 2 4455555665444433 34444 556
Q ss_pred eEEEEcChhhHHH
Q 046656 374 QIVYQGPCELVLD 386 (1326)
Q Consensus 374 ~iv~~G~~~~~~~ 386 (1326)
+ +.+++.+
T Consensus 180 ~-----~~e~~~~ 187 (245)
T 2jeo_A 180 R-----DLEQILT 187 (245)
T ss_dssp ------CHHHHHH
T ss_pred C-----CHHHHHH
Confidence 4 5666654
No 162
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.57 E-value=3.9e-16 Score=171.91 Aligned_cols=152 Identities=17% Similarity=0.135 Sum_probs=94.5
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC-----eeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-----YISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLL 917 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-----~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~ 917 (1326)
+-+++|++++|+||||||||||+++|+|..... ...|.+++++..... .+.+++++|...+.+. |+.|++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 579999999999999999999999999843211 134577777653210 1122333333222211 2222221
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH-HHHHHHHHHHHhh-------CCcEEEEeCCC
Q 046656 918 YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 989 (1326)
Q Consensus 918 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG-qrqrl~ia~aL~~-------~p~illLDEPt 989 (1326)
+. ...+.+ +++.+..+.+++. +|++|++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 012333 3444566666665 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-cCCEEEEEecCCcH---HHHHHhceeeEEecC
Q 046656 990 SGLDAR-------A-----AAIVMRTVKNTVE-TGRTVVCTIHQPSI---DIFEAFDELFLMKRG 1038 (1326)
Q Consensus 990 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~~D~v~~l~~g 1038 (1326)
+++|+. . ...+++.|+++++ .|+|||+++|..+. .+...+|++++|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999983 2 2367777777764 49999999995431 256678999999874
No 163
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.56 E-value=2.8e-15 Score=193.76 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=70.1
Q ss_pred cCCChhhhHHHHHHHHh--hcCCccceEecCCCCCCHHHHHHH-HHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 294 RGISGGQKKRLTTGEMM--VGPALALFMDEISNGLDSSTTFHI-VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al--~~~~~illLDEptsgLD~~t~~~i-~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ +..++.+.... +.+++.++|. .+..+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~-g~~vl~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKI-GAFCMFATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTT-CCEEEEEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEcCc-HHHHHHhccccee
Confidence 46899888888888888 899999999999999999999888 55556654423 4555557777 5677899999999
Q ss_pred cCCeEEEEcChhhH
Q 046656 371 SDGQIVYQGPCELV 384 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~ 384 (1326)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988877654
No 164
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.55 E-value=1.3e-16 Score=185.88 Aligned_cols=181 Identities=14% Similarity=0.140 Sum_probs=125.8
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC----------CccceEEEEcc
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF----------VPQRTAAYISQ 205 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------~~~~~~~yv~Q 205 (1326)
...+|+++ +.+.+|++++|+||||||||||+++|+|..+++ .|.|.+.|++..+. ..++.+.+++|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 45699999 999999999999999999999999999999987 89999988652111 11345777777
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccc
Q 046656 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCAD 285 (1326)
Q Consensus 206 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 285 (1326)
.+. ...+.+.-... .. ...+ .....| .|
T Consensus 134 ~~~-----~~~~r~~~~~~-------------~~-----------------------------~~ae-~~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFT-------------AT-----------------------------TIAE-YFRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHH-------------HH-----------------------------HHHH-HHHTTT----CE
T ss_pred CCC-----CHHHHHHHHHH-------------HH-----------------------------HHHH-HHHhcc----cc
Confidence 532 22222211000 00 0000 011111 11
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCE-----EEEEEecChhhH
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGT-----AVISLLQPAPET 360 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t-----~ii~i~q~~~~~ 360 (1326)
..+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.+.+.....+++ +|++.+|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 110002355699999 899999 577776 99999999999999998864312355 6676778876
Q ss_pred HhhCCeEEEecCCeEEEEcChhhH
Q 046656 361 YDLFDDIILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 361 ~~~~D~vilL~~G~iv~~G~~~~~ 384 (1326)
..+||++++|.+|+++.+|+..++
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 577999999999999999987765
No 165
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.55 E-value=2.2e-16 Score=203.47 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=98.3
Q ss_pred ceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 046656 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 834 ~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
++.+++||++.+++|++++|+|||||||||||+++++..... .. |...... ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~------g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QI------GSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HH------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hc------Cccccch--hhhhhHH---HHHHHhCChH
Confidence 356999999999999999999999999999999998632100 00 1000000 0011111 1111111111
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD 993 (1326)
+ ..... .+.+|+|++|++.|+++ +.+|+++||||||+|||
T Consensus 727 d----------------------------------~l~~~-----~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 D----------------------------------NIYKG-----RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred H----------------------------------HHHHh-----HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 1 11111 13589999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-cCCEEEEEecCCcHHHHHHhcee
Q 046656 994 ARAAAIVM-RTVKNTVE-TGRTVVCTIHQPSIDIFEAFDEL 1032 (1326)
Q Consensus 994 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v 1032 (1326)
+.....+. ..++.+.+ .|+|||++||++. +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99888887 67777765 5999999999964 55667765
No 166
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=4.8e-15 Score=183.63 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=111.1
Q ss_pred eEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhh
Q 046656 144 SGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSA 223 (1326)
Q Consensus 144 s~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 223 (1326)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.|++|++. .+++++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 5689999999999999999999999999987653 32 12455666531 12222210
Q ss_pred hhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHH
Q 046656 224 RCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKR 303 (1326)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR 303 (1326)
+ . +. + .+. +...|+....+ ..+..|||||+||
T Consensus 330 ~---~-----------------g~--~--------------------~~~-~~~~g~~~~~~-----~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 S---W-----------------GM--D--------------------FEE-MERQNLLKIVC-----AYPESAGLEDHLQ 361 (525)
T ss_dssp T---T-----------------SC--C--------------------HHH-HHHTTSEEECC-----CCGGGSCHHHHHH
T ss_pred H---c-----------------CC--C--------------------HHH-HHhCCCEEEEE-----eccccCCHHHHHH
Confidence 0 0 00 0 001 12344444333 3456799999999
Q ss_pred HHHHHHhhcCCccceEecCCCCCCHH-----HHHHHHHHHHHHHHhcCCEEEEEEecCh----------hhHHhhCCeEE
Q 046656 304 LTTGEMMVGPALALFMDEISNGLDSS-----TTFHIVNSLRQNIHILNGTAVISLLQPA----------PETYDLFDDII 368 (1326)
Q Consensus 304 vsia~al~~~~~illLDEptsgLD~~-----t~~~i~~~l~~~~~~~~~t~ii~i~q~~----------~~~~~~~D~vi 368 (1326)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.. . +.+++.++|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~-g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-E-EITGLFTNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-T-TCEEEEEEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-C-CCEEEEEECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 89999998888754 3 44555566665 66778999999
Q ss_pred EecCCe
Q 046656 369 LLSDGQ 374 (1326)
Q Consensus 369 lL~~G~ 374 (1326)
+|++|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
No 167
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.52 E-value=1.5e-15 Score=193.08 Aligned_cols=133 Identities=20% Similarity=0.146 Sum_probs=97.4
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
+.+++|+|+. |++++|+|||||||||||++|+|.... ...|.+. + . .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p--a--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P--A--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S--S--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e--h--hccceeeHHH---hhccCCHHH
Confidence 5699999998 999999999999999999999996420 1123221 1 1 1234677766 334445544
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCcEEEEeCC---C
Q 046656 915 SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 989 (1326)
Q Consensus 915 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL--~~~p~illLDEP---t 989 (1326)
++. .++|+|+++++.+++++ +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 331 14799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhcCCEEEEEecCCcHHHHHHh
Q 046656 990 SGLDARAA-AIVMRTVKNTVETGRTVVCTIHQPSIDIFEAF 1029 (1326)
Q Consensus 990 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 1029 (1326)
++||..+. ..+.+.|++ .|+|+|++||+. ++.+.+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh
Confidence 99998875 467777765 589999999985 344443
No 168
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.51 E-value=1.4e-16 Score=182.89 Aligned_cols=157 Identities=15% Similarity=0.063 Sum_probs=84.9
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCC-CCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVT 911 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~T 911 (1326)
+++.++++++++| +|+|+||||||||++.|+|. .. +.+| |.++|.+.......+.+++++|.+.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 3467999999988 99999999999999999996 44 3467 8888876543222345789999888888889
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-
Q 046656 912 VYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS- 990 (1326)
Q Consensus 912 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts- 990 (1326)
++|+..++.... . .+.....++.+. +..+..+ +++|||||||+.+||+++ +|++||||+
T Consensus 80 v~Dt~g~~~~~~-~----~e~~~~l~~~l~------~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAIN-C----RDCFKTIISYID------EQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHH------HHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcC-c----HHHHHHHHHHHH------HHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 999887753321 0 000011112221 1223333 359999999999998875 999999998
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCc
Q 046656 991 GLDARAAAIVMRTVKNTVET-GRTVVCTIHQPS 1022 (1326)
Q Consensus 991 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1022 (1326)
|||+... +.++++.+. +.++|++.||..
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 5999873 555655443 788999999863
No 169
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.51 E-value=2.6e-15 Score=165.35 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=93.4
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccCCCC----ceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHH
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL----KVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLA 220 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~----~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 220 (1326)
+-+++|++++|+||||||||||++.|+|...+.. .-.|.+.+++.+.. ..+.++++.|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999654410 01346666664310 11234444444333322 4444433
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
+.. ..++++
T Consensus 96 ~~~-----------------------------------------------------------------------~~~~~~ 104 (231)
T 4a74_A 96 VAR-----------------------------------------------------------------------AFNSNH 104 (231)
T ss_dssp EEE-----------------------------------------------------------------------CCSHHH
T ss_pred EEe-----------------------------------------------------------------------cCChHH
Confidence 311 122222
Q ss_pred -hHHHHHHHHhh-------cCCccceEecCCCCCCHH-------H-----HHHHHHHHHHHHHhcCCEEEEEEecChhh-
Q 046656 301 -KKRLTTGEMMV-------GPALALFMDEISNGLDSS-------T-----TFHIVNSLRQNIHILNGTAVISLLQPAPE- 359 (1326)
Q Consensus 301 -kqRvsia~al~-------~~~~illLDEptsgLD~~-------t-----~~~i~~~l~~~~~~~~~t~ii~i~q~~~~- 359 (1326)
++++..++.++ .+|+++++||||+++|+. . ..++++.|+++++.. +.+|+.++|...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~-g~tvi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY-DIAVFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHC-CCeEEEEeecccCc
Confidence 22233333333 489999999999999983 1 236788888876654 4556667884444
Q ss_pred ---HHhhCCeEEEecCCe
Q 046656 360 ---TYDLFDDIILLSDGQ 374 (1326)
Q Consensus 360 ---~~~~~D~vilL~~G~ 374 (1326)
+...+|+++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 888999999998753
No 170
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.50 E-value=1.5e-15 Score=173.88 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=102.6
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cc--cceEEEeecCCCCCCCCCHHHHHH
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-------TF--TRISGYCEQNDIHSPLVTVYESLL 917 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~~~~~~Tv~E~l~ 917 (1326)
+|++++|+||||||||||++.|+|...+ .+|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999999998763 479999999876321 11 245899999998888889999987
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHH
Q 046656 918 YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDAR 995 (1326)
Q Consensus 918 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPtsgLD~~ 995 (1326)
+... + ..+ ..+++..|+.+..+.. ++..++||++|||+++.+|+ +|.|| |+++.
T Consensus 179 ~~~~-~---~~d--------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~--- 234 (304)
T 1rj9_A 179 AMKA-R---GYD--------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ--- 234 (304)
T ss_dssp HHHH-H---TCS--------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT---
T ss_pred HHHh-C---CCC--------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH---
Confidence 6421 1 000 0122223332222211 45566999999999999999 44555 45444
Q ss_pred HHHHHHHHHHHHHhc-CCEEEEEecCC
Q 046656 996 AAAIVMRTVKNTVET-GRTVVCTIHQP 1021 (1326)
Q Consensus 996 ~~~~i~~~l~~~~~~-g~tvi~~~H~~ 1021 (1326)
.+++.++++.+. |.|+|++||+.
T Consensus 235 ---~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 235 ---NGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECTT
T ss_pred ---HHHHHHHHHHHHcCCcEEEEECCc
Confidence 455666666544 89999999974
No 171
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.49 E-value=3.8e-14 Score=144.43 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=69.8
Q ss_pred CccccCCChhhhHHHHHH------HHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 046656 290 DEMVRGISGGQKKRLTTG------EMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL 363 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia------~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 363 (1326)
+..+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++.. . +.+|+.++|+. +..+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-K-IPQVILVSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-G-SSEEEEEESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-c-CCEEEEEEChH-HHHHh
Confidence 456778999999999876 899999999999999999999999999999998754 2 44555677776 67889
Q ss_pred CCeEEEe--cCCeE
Q 046656 364 FDDIILL--SDGQI 375 (1326)
Q Consensus 364 ~D~vilL--~~G~i 375 (1326)
||++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 45643
No 172
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.49 E-value=6e-17 Score=176.32 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=111.3
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC--CCCCHHHHHHHHHHh
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHS--PLVTVYESLLYSAWL 922 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~~Tv~E~l~f~~~l 922 (1326)
.++|+++||+|+||||||||+++|+|...+ .++|++|++.+. ..+|+++++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999996531 368999988776 5678988876531
Q ss_pred hccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH----HHHHHHHHHHhhCCcEEEEeCCCCC-------
Q 046656 923 RLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 991 (1326)
Q Consensus 923 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq----rqrl~ia~aL~~~p~illLDEPtsg------- 991 (1326)
..+...+ .+.+.++++.+++.+..+... ..+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAFD----LALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGBC----HHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhhh----HHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1111111 234677788888776555432 3588886 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhcCCEEEEEecCC
Q 046656 992 LDARAAAIVMRTVKNT-VETGRTVVCTIHQP 1021 (1326)
Q Consensus 992 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1021 (1326)
||+.....+.+.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
No 173
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.49 E-value=1.1e-15 Score=175.43 Aligned_cols=162 Identities=10% Similarity=0.108 Sum_probs=80.4
Q ss_pred cccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcc-cCCCCceeeEEEECCccCCCCCccceEEEEccCCC
Q 046656 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ-LDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDV 208 (1326)
Q Consensus 130 ~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~-~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~ 208 (1326)
++++++++.+++++++.| +|+||||+|||||++.|+|. +.+. +| |.++|.++......+.++|++|.+.
T Consensus 4 l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 4 LPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp --------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---
T ss_pred CcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCC
Confidence 344556678999999998 99999999999999999997 6665 78 8888876543222356799999888
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
....+||.||..++..... ..+++ .+.+++.+. .
T Consensus 74 ~~~~ltv~Dt~g~~~~~~~-~e~~~-----------------------------------~l~~~l~~~------~---- 107 (301)
T 2qnr_A 74 VKLRLTVVDTPGYGDAINC-RDCFK-----------------------------------TIISYIDEQ------F---- 107 (301)
T ss_dssp CCEEEEEEEEC------------CT-----------------------------------THHHHHHHH------H----
T ss_pred cccCcchhhhhhhhhhcCc-HHHHH-----------------------------------HHHHHHHHH------H----
Confidence 7888999999887542210 00000 001111110 1
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCC-CCHHHHHHHHHHHHHHHHhcCCEEEEEEecCh
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNG-LDSSTTFHIVNSLRQNIHILNGTAVISLLQPA 357 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsg-LD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~ 357 (1326)
+...+++|||||||+.+||+++ ++++||||++ ||+... +.++++.. ..+.+++...|+.
T Consensus 108 -~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 108 -ERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp -HHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred -HHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 1334579999999999988875 9999999985 999863 44555432 2245555556654
No 174
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.49 E-value=1.4e-15 Score=178.00 Aligned_cols=164 Identities=18% Similarity=0.107 Sum_probs=99.5
Q ss_pred eeecc-eeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCee----EEE-EEEcCccCCcccccceEEEeecCCCCCCCC
Q 046656 837 LLNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----SGN-ITISGYPKKQETFTRISGYCEQNDIHSPLV 910 (1326)
Q Consensus 837 vL~~v-s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~----~G~-i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~ 910 (1326)
.|+++ .+.+++|++++|+||||||||||++.|++.....+. .|. |+|++.+.. .++.+++++|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 35554 588999999999999999999999999986421112 367 888886531 12234555554332221
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCcEE
Q 046656 911 TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV-------ANPSII 983 (1326)
Q Consensus 911 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~-------~~p~il 983 (1326)
++.||+.+. +. .-|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 222222110 00 02567888888888888 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 984 FMDEPTSGLDARA------------AAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 984 lLDEPtsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
++||||+++|+.. ...+++.|+++++ .|+|||+++|... +....++...... ||+++.++
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~ 308 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHS 308 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTT
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeec
Confidence 9999999999852 3456666777664 4899999999864 3333344444454 45555443
No 175
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.48 E-value=3.1e-15 Score=195.94 Aligned_cols=159 Identities=15% Similarity=0.107 Sum_probs=111.3
Q ss_pred ceeecceeEEEeC-------ceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEE-EEccCCC
Q 046656 137 LTILKDVSGIIKP-------GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAA-YISQHDV 208 (1326)
Q Consensus 137 ~~iL~~vs~~i~~-------G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~ 208 (1326)
..+++|+++.+++ |++++|+|||||||||||+++ |.+.+ ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC
Confidence 4689999999987 999999999999999999999 98752 11344 8999753
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
.+||.|+|.. + +|+.+..+
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555421 0 01100000
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHH-HHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTF-HIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~-~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.....+|++++ ++++|++++.+|+++|||||++|+|+.... .++..++.+.+. .+.+++.++|..+.+..++|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~-~g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET-IKCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT-SCCEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHhCCcc
Confidence 11224677666 499999999999999999999999998854 467777777543 2456666889998888899999
Q ss_pred EEecCCeEE--EEcChh
Q 046656 368 ILLSDGQIV--YQGPCE 382 (1326)
Q Consensus 368 ilL~~G~iv--~~G~~~ 382 (1326)
.++ +|++. +.|+++
T Consensus 923 ~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECE 938 (1022)
T ss_dssp SEE-EEEEEEC------
T ss_pred eee-cCeEEEEEecCcc
Confidence 887 58887 556544
No 176
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.48 E-value=1e-14 Score=186.60 Aligned_cols=156 Identities=13% Similarity=0.030 Sum_probs=105.1
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
+.+++|+++. ++|++++|+|||||||||||++|+|....+ . .|...... ...++++.| ++..+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-Y------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-T------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-h------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4689999999 999999999999999999999999853110 0 12111111 123555554 333444444
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 046656 915 SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994 (1326)
Q Consensus 915 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~ 994 (1326)
++..+ .+.+|+|+++ +..+..++.+|+++|||||++|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 43210 0236777654 4455556899999999999999998
Q ss_pred HHHHHH-HHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 995 RAAAIV-MRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 995 ~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
.....+ +..++.+.+ .|+|+|++||++. +.+.+|++..+.+ |++.+...
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~~~ 752 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDALEH 752 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEEEc
Confidence 766664 778888877 4999999999975 4568898877775 57666543
No 177
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.48 E-value=3.8e-15 Score=166.22 Aligned_cols=169 Identities=12% Similarity=0.087 Sum_probs=95.8
Q ss_pred eecce-eEEEeCceEEEEecCCCCChhHHHHHHh--cccCCCCceeeEEEECCccCCCCCc--cceEEEEccCCCCCCCC
Q 046656 139 ILKDV-SGIIKPGRMTLLLGPPSSGKTTLLLALA--GQLDSSLKVSGRVTYNGHDMNEFVP--QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 139 iL~~v-s~~i~~G~~~~ilGp~GsGKSTLL~~L~--G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~l 213 (1326)
.|+++ .+-+++|++++|+||||||||||+++|+ |...+. +|.+.+++........ .+.++|++|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 35444 2479999999999999999999999999 653443 5666666643211100 12234444432222222
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
++.++........ . .. .. ...
T Consensus 95 ~~~~~~~~~~~~~-------------~-------------------------------~~----------~~-----~~~ 115 (251)
T 2ehv_A 95 AIVDGVSSVVGLP-------------S-------------------------------EE----------KF-----VLE 115 (251)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEEccccccccc-------------c-------------------------------cc----------ce-----ecc
Confidence 2222211100000 0 00 00 000
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCC-----HHHHHHHHHHHHHHHHhcCCEEEEEEecChhhH--------
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLD-----SSTTFHIVNSLRQNIHILNGTAVISLLQPAPET-------- 360 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD-----~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~-------- 360 (1326)
...+-++..+......-..+|+++++||||++|| ...+..+.+.++.+.. . +.+|+.++|...++
T Consensus 116 ~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~-g~tii~vtH~~~~~~~~~~~~~ 193 (251)
T 2ehv_A 116 DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-M-GVTTILTTEAPDPQHGKLSRYG 193 (251)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-H-CCEEEEEECCC----CCSSSSS
T ss_pred CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-C-CCeEEEEECCCCCCcccccccC
Confidence 0123344444444444457999999999999997 6666668888877654 3 45566678887777
Q ss_pred -HhhC-CeEEEec
Q 046656 361 -YDLF-DDIILLS 371 (1326)
Q Consensus 361 -~~~~-D~vilL~ 371 (1326)
..+| |+|++|+
T Consensus 194 i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 194 IEEFIARGVIVLD 206 (251)
T ss_dssp CGGGGCSEEEEEE
T ss_pred hhhEeeeEEEEEe
Confidence 6788 9999995
No 178
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.48 E-value=6.4e-15 Score=165.22 Aligned_cols=133 Identities=15% Similarity=0.211 Sum_probs=94.2
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRE 217 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 217 (1326)
++|+|+| +++|++++|+|||||||||||++|+|.++|. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 8999999999999999999999999998752 279999998764311 11111111110
Q ss_pred HHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCC
Q 046656 218 TLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGIS 297 (1326)
Q Consensus 218 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 297 (1326)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 011210 112
Q ss_pred hhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 298 GGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 298 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
|++||++|..+|+++++|||| |+.+...+++ . +. . +.+|++++|... +...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~-g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-T-GHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-T-TCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-c-CCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9988765543 2 22 2 445566667654 6788999988864
No 179
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.47 E-value=7.2e-14 Score=158.92 Aligned_cols=151 Identities=20% Similarity=0.200 Sum_probs=102.7
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhh
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 923 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr 923 (1326)
.+++|++++|+||||||||||++.+++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 488999999999999999999999998432 2444 23443211 2346677665421 01111111 111
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC--CCCHHHH---H
Q 046656 924 LRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 998 (1326)
Q Consensus 924 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts--gLD~~~~---~ 998 (1326)
.+... ...+++++.+.+.+..+..+ ..||+||++++ ++++.+|++|++||||+ ++|.... .
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 12222 22566788888877665543 35999998865 68889999999999999 9997443 7
Q ss_pred HHHHHHHHHH-hcCCEEEEEecCCc
Q 046656 999 IVMRTVKNTV-ETGRTVVCTIHQPS 1022 (1326)
Q Consensus 999 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1022 (1326)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
No 180
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.47 E-value=2.5e-16 Score=167.85 Aligned_cols=159 Identities=23% Similarity=0.250 Sum_probs=104.3
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHHHHHhhhhhccC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 228 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 228 (1326)
|++++|+||||||||||++.|+|.++ + +| |.++|....+.. .++.++|++|+. ... ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999987 5 78 888887664332 246789999963 111 1111 01000
Q ss_pred CccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHH-HH
Q 046656 229 GSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT-TG 307 (1326)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvs-ia 307 (1326)
.++ +...+..+| +....+|||||+++. ++
T Consensus 67 -------------------~~~------------------------------~~~~~~~v~-~~~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 67 -------------------EPP------------------------------PGKRECRVG-QYVVDLTSFEQLALPVLR 96 (189)
T ss_dssp -------------------CCC------------------------------SSSCCEESS-SSEECHHHHHTTTTTTTC
T ss_pred -------------------cCC------------------------------ccccccccc-eEEEcchHHHHHHHHHHh
Confidence 000 000112344 234569999999984 44
Q ss_pred H---HhhcCCccceEec--CCCCCCHHHHHHHHHHHHHHHHhcCCEEEE---EEecChhhHHhhCCeEEEecCCeEEEEc
Q 046656 308 E---MMVGPALALFMDE--ISNGLDSSTTFHIVNSLRQNIHILNGTAVI---SLLQPAPETYDLFDDIILLSDGQIVYQG 379 (1326)
Q Consensus 308 ~---al~~~~~illLDE--ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii---~i~q~~~~~~~~~D~vilL~~G~iv~~G 379 (1326)
+ |+..+|++++||| |+..+|......+.+.+.+ ..++|+ .++|..+ ..+.|+|..+.+|+++.-.
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-----~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST-----PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-----SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-----CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 4 5789999999999 8988998765555554442 234443 3336553 3567888888899987643
No 181
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.47 E-value=1.4e-15 Score=165.46 Aligned_cols=141 Identities=15% Similarity=0.133 Sum_probs=101.6
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCC--CCCCHHHHHHhhhh
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHI--GEMTVRETLAFSAR 224 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 224 (1326)
.++|++++|+||||||||||+++|+|.+.| .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 478999999999999999999999998753 478999988766 56899998766321
Q ss_pred hccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh----
Q 046656 225 CQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ---- 300 (1326)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 300 (1326)
.. ...+ .......++.+++.+..+. ....+|+||
T Consensus 61 ~~---~~~~----------------------------------~~~~~~~l~~~~~~~~~~~-----~~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP---DAFD----------------------------------LALYLEHAQALLRGLPVEM-----PVYDFRAYTRSPR 98 (211)
T ss_dssp SG---GGBC----------------------------------HHHHHHHHHHHHTTCCEEE-----CCEETTTTEECSS
T ss_pred Ch---hhhh----------------------------------HHHHHHHHHHHHcCCCcCC-----CcccCcccCCCCC
Confidence 10 0000 0112334566666554432 345689996
Q ss_pred hHHHHHHHHhhcCCccceEecCCCC-------CCHHHHHHHHHHHHHHHHhcCCEEEE
Q 046656 301 KKRLTTGEMMVGPALALFMDEISNG-------LDSSTTFHIVNSLRQNIHILNGTAVI 351 (1326)
Q Consensus 301 kqRvsia~al~~~~~illLDEptsg-------LD~~t~~~i~~~l~~~~~~~~~t~ii 351 (1326)
+||++++++++.+|+++++||||++ ||+.....+.+.+++.....+.+++.
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~ 156 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEG 156 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHH
Confidence 4788999999999999999999999 99999999999887754333444443
No 182
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.47 E-value=1.3e-14 Score=169.45 Aligned_cols=133 Identities=20% Similarity=0.269 Sum_probs=89.8
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESL 916 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l 916 (1326)
+|+++ .+.+|++++|+||||||||||+++|+|...+. ..|.|...+.+... ......+++.|......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~-------- 181 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRD-------- 181 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTT--------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccc--------
Confidence 45554 57899999999999999999999999976421 13555443333221 11122234444321111
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 046656 917 LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996 (1326)
Q Consensus 917 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~ 996 (1326)
.++..+ +||++|..+|++|++|||| |.++
T Consensus 182 --------------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 182 --------------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp --------------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred --------------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 122222 9999999999999999999 7666
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 997 AAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 997 ~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
... +.+.+++|.|||+|+|+.+. . +.+||++.|..|
T Consensus 211 ~~~----~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 211 IRL----ALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHH----HHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHH----HHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 444 34446679999999999873 3 789999999643
No 183
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.46 E-value=3.8e-15 Score=174.36 Aligned_cols=168 Identities=19% Similarity=0.183 Sum_probs=100.2
Q ss_pred eeecce-eEEEeCceEEEEecCCCCChhHHHHHHhccc--CCC-CceeeE-EEECCccCCCCCccceEEEEccCCCCCCC
Q 046656 138 TILKDV-SGIIKPGRMTLLLGPPSSGKTTLLLALAGQL--DSS-LKVSGR-VTYNGHDMNEFVPQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 138 ~iL~~v-s~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~--~~~-~~~~G~-V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 212 (1326)
..|+++ ++.+++|++++|+||||||||||++.|++.. +|+ ....|+ |.+++.+. + .++.+++++|...+.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH
Confidence 346665 6899999999999999999999999999987 443 011367 88888653 1 13456667776544433
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
++.||+.+....
T Consensus 195 -~v~~ni~~~~~~------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 -EVLKHIYVARAF------------------------------------------------------------------- 206 (349)
T ss_dssp -HHGGGEEEEECC-------------------------------------------------------------------
T ss_pred -HHhhCEEEEecC-------------------------------------------------------------------
Confidence 555555432110
Q ss_pred ccCCChhhhHHHHHHHHhh-------cCCccceEecCCCCCCHHH------------HHHHHHHHHHHHHhcCCEEEEEE
Q 046656 293 VRGISGGQKKRLTTGEMMV-------GPALALFMDEISNGLDSST------------TFHIVNSLRQNIHILNGTAVISL 353 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~-------~~~~illLDEptsgLD~~t------------~~~i~~~l~~~~~~~~~t~ii~i 353 (1326)
-|++|++++.++++++ .+|+++++||||+++|+.. ..++++.|+++++.. +++++.+
T Consensus 207 ---~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~-~~tvii~ 282 (349)
T 1pzn_A 207 ---NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY-DIAVFVT 282 (349)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred ---ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHc-CcEEEEE
Confidence 0223333333333333 7899999999999999852 356666777776644 5556667
Q ss_pred ecChhhHHhhCCeEEEecCCeEEEEcC
Q 046656 354 LQPAPETYDLFDDIILLSDGQIVYQGP 380 (1326)
Q Consensus 354 ~q~~~~~~~~~D~vilL~~G~iv~~G~ 380 (1326)
+|...+....+++......|+++.++.
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EECC---------------CCCCCTTC
T ss_pred cccccccccccCCccccCCcceEeecC
Confidence 777665555566667777787766554
No 184
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.45 E-value=1.2e-14 Score=184.91 Aligned_cols=132 Identities=15% Similarity=0.127 Sum_probs=95.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC-CCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD-SSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. . ..+..+++++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------p--a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------P--AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------S--SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------e--hhccceeeHHH---hhccCCH
Confidence 4678999998 99999999999999999999999863 33 45431 1 11345677766 3445555
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55442 14
Q ss_pred CChhhhHHHHHHHHh--hcCCccceEecC---CCCCCHHHH-HHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 296 ISGGQKKRLTTGEMM--VGPALALFMDEI---SNGLDSSTT-FHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 296 LSGGqkqRvsia~al--~~~~~illLDEp---tsgLD~~t~-~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|++ . +.+++.++|..+. .+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~-g~~vl~~TH~~~l-~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----R-RAYTLFATHYFEL-TALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----H-TCEEEEECCCHHH-HTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----C-CCEEEEEeCCHHH-HHhh
Confidence 799999999999999 999999999999 999998875 578887765 2 3445556777543 4454
No 185
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.45 E-value=1.3e-14 Score=159.77 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=106.1
Q ss_pred Eeeeccee-EEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccc---eEEEeecCCCCCCCCC
Q 046656 836 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTR---ISGYCEQNDIHSPLVT 911 (1326)
Q Consensus 836 ~vL~~vs~-~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gyv~Q~~~~~~~~T 911 (1326)
..|+++.+ .+++|++++|+||||||||||++.|++... +..|.+.+.+.+.......+ ..++.+|+.... .+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 46888885 899999999999999999999999997543 12345554433221111000 011111110000 000
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCC
Q 046656 912 VYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS--IIFMDEPT 989 (1326)
Q Consensus 912 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPt 989 (1326)
. ++.....++ .... ....|.++.++...+.....+|+ +|++||||
T Consensus 87 ------------~------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 ------------I------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp ------------E------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred ------------E------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0 000000000 0000 12359999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-cCCEEEEEecCCc-------HHHHHHhceeeEEecC
Q 046656 990 SGL--DARAAAIVMRTVKNTVE-TGRTVVCTIHQPS-------IDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 990 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~D~v~~l~~g 1038 (1326)
+++ |+.....+++.|+++++ .|+|||+++|+.. ..+...+|++++|.+.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 887 99888999999999864 5999999999972 1367789999999863
No 186
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.44 E-value=3.1e-13 Score=163.29 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=64.6
Q ss_pred ccCCChhhhHHHHHHHHhh----cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 293 VRGISGGQKKRLTTGEMMV----GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~----~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
+..||||||||++||++|+ .+|++++||||+++||+..+..+.+.+++... .++.+++++|. .+..+.||+++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~ 407 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALV 407 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEE
Confidence 3459999999999999999 68999999999999999999999999988642 24556667777 56778999999
Q ss_pred Eec
Q 046656 369 LLS 371 (1326)
Q Consensus 369 lL~ 371 (1326)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 187
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.44 E-value=6.4e-14 Score=180.61 Aligned_cols=155 Identities=13% Similarity=0.134 Sum_probs=98.0
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
..+++|+|+.+++|++++|+|||||||||||+++++..-.. ..| . +.+... +.++..+.++..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g------~----~vpa~~-~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIG------S----YVPAEE-ATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHT------C----CBSSSE-EEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcC------c----cccchh-hhhhHHHHHHHhCChH
Confidence 56899999999999999999999999999999998753210 011 0 001110 1111111111111111
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
+++. .....+
T Consensus 727 d~l~----------------------------------------------------------------------~~~stf 736 (918)
T 3thx_B 727 DNIY----------------------------------------------------------------------KGRSTF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHHH----------------------------------------------------------------------HhHHHh
Confidence 1110 123468
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHH-HHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE-ecCCe
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIV-NSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL-LSDGQ 374 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~-~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil-L~~G~ 374 (1326)
|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+.+.. +.+++.++|+. +..+++|+.-- +.+++
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~-g~tvl~vTH~~-el~~l~~~~~~~v~n~~ 813 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDV-KSLTLFVTHYP-PVCELEKNYSHQVGNYH 813 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT-CCEEEEECSCG-GGGGHHHHTTTTEEEEE
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhc-CCeEEEEeCcH-HHHHHHhhcccceEEEE
Confidence 9999999999998 8899999999999999999999987 5666664433 45556677775 45566665421 34444
Q ss_pred EEE
Q 046656 375 IVY 377 (1326)
Q Consensus 375 iv~ 377 (1326)
+.+
T Consensus 814 ~~~ 816 (918)
T 3thx_B 814 MGF 816 (918)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 188
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.44 E-value=5.5e-16 Score=165.19 Aligned_cols=158 Identities=20% Similarity=0.168 Sum_probs=102.8
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT 926 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~ 926 (1326)
|++++|+||||||||||+++|+|... .+| |.++|++..+ ...++.+||++|+. .... +++ +.+. .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~--~ 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVG--L 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECC--C
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccc--c
Confidence 78999999999999999999999764 257 8888876643 23567789999975 1111 111 0000 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHH-HHHH---HHhhCCcEEEEeC--CCCCCCHHHHHH
Q 046656 927 EVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAI 999 (1326)
Q Consensus 927 ~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqrl-~ia~---aL~~~p~illLDE--PtsgLD~~~~~~ 999 (1326)
. ..+ ..+..+|..+ ..+|+|||+++ ++++ |+..+|++||||| ||..+|......
T Consensus 67 ~------------------~~~~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 E------------------PPPGKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp C------------------CCSSSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred c------------------CCccccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0 000 0111333322 25899999988 4454 5789999999999 899999876555
Q ss_pred HHHHHHHHHhcCCEEEE----EecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 1000 VMRTVKNTVETGRTVVC----TIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 1000 i~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
+.++++ ...++|+ ++|+.+ ....|++..+. +|+++...+
T Consensus 128 l~~~l~----~~~~~ilgti~vsh~~~---~~~vd~i~~~~-~~~i~~~~~ 170 (189)
T 2i3b_A 128 VRQTLS----TPGTIILGTIPVPKGKP---LALVEEIRNRK-DVKVFNVTK 170 (189)
T ss_dssp HHHHHH----CSSCCEEEECCCCCSSC---CTTHHHHHTTC-CSEEEECCS
T ss_pred HHHHHh----CCCcEEEEEeecCCCCc---hHHHHHHeecC-CcEEEEeCh
Confidence 555444 4445553 239864 23568887776 478777554
No 189
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.42 E-value=1.6e-14 Score=165.38 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=100.8
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---------cceEEEEccCCCCCCCCCHHHHH
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---------QRTAAYISQHDVHIGEMTVRETL 219 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 219 (1326)
+|++++|+||||||||||++.|+|.++|+ +|+|.++|.++..... ++.++|++|++...|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999987 8999999988753321 24589999998888889999999
Q ss_pred HhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChh
Q 046656 220 AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGG 299 (1326)
Q Consensus 220 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 299 (1326)
.++... +. +. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~~-~~----d~--------------------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKAR-GY----DL--------------------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHHH-TC----SE--------------------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHhC-CC----CE--------------------------------------EEecCCCCCCchH--------HHHHHH
Confidence 864311 00 00 0011122221111 124555
Q ss_pred hhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC
Q 046656 300 QKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP 356 (1326)
Q Consensus 300 qkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~ 356 (1326)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.+. ++++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~-iivTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTG-VIVTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSE-EEEECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcE-EEEECC
Confidence 68999999999999994444 4555555566666666554334444 446665
No 190
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.41 E-value=5e-15 Score=185.66 Aligned_cols=165 Identities=18% Similarity=0.156 Sum_probs=109.9
Q ss_pred EEEecCCCCChhHHHHHHhcccCC-CCceeeEEEECCccCC------CCCccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLDS-SLKVSGRVTYNGHDMN------EFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 225 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~~-~~~~~G~V~~~G~~~~------~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 225 (1326)
++|+|||||||||||++|+|...| + +|.|+++|.++. ....++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 5 899999998852 112356799999999999999999999875432
Q ss_pred ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHH
Q 046656 226 QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT 305 (1326)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvs 305 (1326)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 11000 0011 11222
Q ss_pred HHHHhhcCCccceEecC------CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChh----hHHhh--------CCeE
Q 046656 306 TGEMMVGPALALFMDEI------SNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAP----ETYDL--------FDDI 367 (1326)
Q Consensus 306 ia~al~~~~~illLDEp------tsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~----~~~~~--------~D~v 367 (1326)
++......|+++++||| |+|||+....++.+.++++.....+.+++.++|+.+ ++..+ ...|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22223357999999999 999999999999999998755445666677777654 22222 2457
Q ss_pred EEecCCeEEEEcChhhHHH
Q 046656 368 ILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~~ 386 (1326)
+|+.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8888888887777655443
No 191
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.40 E-value=3.8e-14 Score=177.66 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=92.9
Q ss_pred EEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC------cccccceEEEeecCCCCCCCCCHHHHHHHHHHhhc
Q 046656 851 TALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK------QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 924 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~ 924 (1326)
+||+|+||||||||+++|+|...+ ..+|.|+++|.++. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998653 14899999998741 13466789999999999999999999987532211
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC------CCCCCHHHHH
Q 046656 925 RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 998 (1326)
Q Consensus 925 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP------tsgLD~~~~~ 998 (1326)
... .+ +| ++++.++.+...+|+++++||| |+|||+....
T Consensus 127 ~~~----------------~~----------------~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 GEG----------------MG----------------IS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp CSS----------------SC----------------CC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred CCc----------------cc----------------cc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 000 00 11 0111122222348999999999 9999999999
Q ss_pred HHHHHHHHHHhc--CCEEEEEecCCc
Q 046656 999 IVMRTVKNTVET--GRTVVCTIHQPS 1022 (1326)
Q Consensus 999 ~i~~~l~~~~~~--g~tvi~~~H~~~ 1022 (1326)
.+.++++++..+ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 677888999875
No 192
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.39 E-value=5.6e-13 Score=146.70 Aligned_cols=78 Identities=13% Similarity=0.012 Sum_probs=63.2
Q ss_pred CCChhhhHHHHHHHHhhcCCc--cceEecCCCCC--CHHHHHHHHHHHHHHHHhcCCEEEEEEecCh--------hhHHh
Q 046656 295 GISGGQKKRLTTGEMMVGPAL--ALFMDEISNGL--DSSTTFHIVNSLRQNIHILNGTAVISLLQPA--------PETYD 362 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~--illLDEptsgL--D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~--------~~~~~ 362 (1326)
..|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+++.++|.. +.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhe
Confidence 358999988888777778999 99999999888 9999999999999987643 56666678877 55888
Q ss_pred hCCeEEEecCC
Q 046656 363 LFDDIILLSDG 373 (1326)
Q Consensus 363 ~~D~vilL~~G 373 (1326)
+||+|++|+..
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 99999999764
No 193
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.38 E-value=1.5e-13 Score=148.90 Aligned_cols=180 Identities=14% Similarity=0.103 Sum_probs=94.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC---CCeeEEEEEEcCc
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYISGNITISGY 886 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~ 886 (1326)
++++|+++.+. ..++++ +.+++|+.++|+|+||||||||++.|+|... ..+..|.+.+.+.
T Consensus 4 l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 56778877663 136777 7899999999999999999999999999751 0133455433211
Q ss_pred cC--CcccccceEEEeecCCCCCCCC---CHHHHHHHHHH-hhc--------cCCCCHHHHHHHHHHHHHHcCCcccc-c
Q 046656 887 PK--KQETFTRISGYCEQNDIHSPLV---TVYESLLYSAW-LRL--------RTEVDSETRKMFIEEIMELVELKPLR-Q 951 (1326)
Q Consensus 887 ~~--~~~~~~~~~gyv~Q~~~~~~~~---Tv~E~l~f~~~-lr~--------~~~~~~~~~~~~v~~~l~~l~l~~~~-~ 951 (1326)
-. ....+....|+.... .+.. ..+..+..... .+. .........+..+.+.++..++..+. .
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 00 000000111211100 0000 01111111110 000 00000011122345566666665321 2
Q ss_pred ccccCCCCCCCCHHHHHH-HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 046656 952 SLVGLPGESGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013 (1326)
Q Consensus 952 ~~vg~~~~~~LSgGqrqr-l~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~t 1013 (1326)
..+ ..+|+||||| +..+++++.+|+++++|||||++|......+++.|.++..+|.|
T Consensus 145 nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 TKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 222 2489999999 89999999999999999999999999999999999988765544
No 194
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=1.8e-14 Score=171.40 Aligned_cols=164 Identities=12% Similarity=0.109 Sum_probs=94.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.+.++|+++.+. ++.+++|++|+| +|+|+||||||||+++|+|........|.+.+++.+
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 367788876652 245899999988 999999999999999999976421112222222211
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
....+.+++++|++...+.+|+.|++.++.... .... ...+.+.+ +. .++.+.+|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~---~~~i~~~i------~~--------~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNC---WQPVIDYI------DS--------KFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------HH--------HHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhh---HHHHHHHH------HH--------HHHHHHHH
Confidence 112346799999988888899999987754321 0000 11111111 11 25667788
Q ss_pred HHHHHHHHhhCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 046656 969 RLTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1022 (1326)
Q Consensus 969 rl~ia~aL~~~p~---illLDEPt-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1022 (1326)
|++|||+++.+|+ +|++|||| .|||+... +.++.+. .+.+||+++|..+
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 9999999999999 99999999 69998763 3344444 3788888888543
No 195
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.34 E-value=1.7e-12 Score=135.76 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEE
Q 046656 960 SGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~----~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1035 (1326)
..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|+. ...+.+|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEEE
Confidence 4699999999999999974 4699999999999999999999999998864 57899999985 467889999865
Q ss_pred e--cCcEEEEEcC
Q 046656 1036 K--RGGQEIYVGP 1046 (1326)
Q Consensus 1036 ~--~gg~~~~~G~ 1046 (1326)
. +|...++..+
T Consensus 140 ~~~~g~s~~~~~~ 152 (173)
T 3kta_B 140 SMRDGVSKVVSLS 152 (173)
T ss_dssp EEETTEEEEEECC
T ss_pred EecCCEEEEEEEE
Confidence 3 4433344333
No 196
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.34 E-value=2.5e-13 Score=173.88 Aligned_cols=156 Identities=12% Similarity=0.031 Sum_probs=100.9
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
..+++|+++. ++|++++|+|||||||||||++|+|..... . . |..+.. ....++++.| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q-~------G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-Y-I------GSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-T-T------TCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-h-c------Ccccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999974211 0 1 211111 1134555555 34455555
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
|++..+ ...+
T Consensus 661 d~l~~~----------------------------------------------------------------------~stf 670 (800)
T 1wb9_A 661 DDLASG----------------------------------------------------------------------RSTF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh----------------------------------------------------------------------hhhh
Confidence 554321 1135
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHH-HHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeE
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHI-VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i-~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 375 (1326)
|+|+++ ++.+...+.+|+++|||||++|+|+.....+ +..++.+.+.. +.+++.++|..+ ...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~-g~~vl~~TH~~e-l~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI-KALTLFATHYFE-LTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTT-CCEEEEECSCGG-GGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhcc-CCeEEEEeCCHH-HHHHhhhhhceEEEEE
Confidence 666654 4444456889999999999999999877775 56666665422 455555777764 4568888877788887
Q ss_pred EEEc
Q 046656 376 VYQG 379 (1326)
Q Consensus 376 v~~G 379 (1326)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 197
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.32 E-value=1.8e-12 Score=147.37 Aligned_cols=153 Identities=13% Similarity=0.144 Sum_probs=98.5
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 225 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 225 (1326)
-+++|++++|+||||||||||++.+++.+. .|++ +.|.+.. ....+.|+..++. . +.+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~-~~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------P-TAIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------H-HHHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------H-HHHH--HHH
Confidence 489999999999999999999999999764 3554 3344321 1345788876543 1 1111 000
Q ss_pred ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHH
Q 046656 226 QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT 305 (1326)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvs 305 (1326)
...+ ...+ ....+.+++.+++.+..+ ..+..+|+||++++
T Consensus 88 ~~~g-----------------~~~~-----------------~~~~~~~~~~l~l~~~~~-----~~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 HALG-----------------AHLS-----------------AEERQAVADGLLIQPLIG-----SLPNIMAPEWFDGL- 127 (279)
T ss_dssp HHHH-----------------TTSC-----------------HHHHHHHHHHEEECCCTT-----SCCCTTSHHHHHHH-
T ss_pred HHHH-----------------hhcC-----------------hhhhhhccCceEEeecCC-----CCcccCCHHHHHHH-
Confidence 0000 0000 011244567777765543 34567999998876
Q ss_pred HHHHhhcCCccceEecCCC--CCCHHHH---HHHHHHHHHHHHhcCCEEEEEEecChhh
Q 046656 306 TGEMMVGPALALFMDEISN--GLDSSTT---FHIVNSLRQNIHILNGTAVISLLQPAPE 359 (1326)
Q Consensus 306 ia~al~~~~~illLDEpts--gLD~~t~---~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 359 (1326)
++++.+|+++++||||+ ++|.... .++++.|+++++..+ ++|+.++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g-~tvi~i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG-CSIVFLHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC-CEEEEEEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcC-CEEEEEecCCCc
Confidence 57788999999999999 9998544 788888888876544 455557776644
No 198
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.32 E-value=7.4e-14 Score=152.39 Aligned_cols=127 Identities=17% Similarity=0.138 Sum_probs=85.6
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH----HHHHHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTV----YESLLY 918 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv----~E~l~f 918 (1326)
-..++|++++|+||||||||||+++|+|..++....|.|.+++.+... ..++.++|++|++..++.+++ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 356899999999999999999999999976532368999999876543 223457899987543333332 121111
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 046656 919 SAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998 (1326)
Q Consensus 919 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~ 998 (1326)
.+ ... +.| +++ +.+++..++++||| ||+.++.
T Consensus 90 ~~-------------------------------~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 90 FG-------------------------------NYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp TT-------------------------------EEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred Hh-------------------------------ccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 00 000 112 111 34455668999999 9999999
Q ss_pred HHHHHHHHHHhcCCEEEEEecCCc
Q 046656 999 IVMRTVKNTVETGRTVVCTIHQPS 1022 (1326)
Q Consensus 999 ~i~~~l~~~~~~g~tvi~~~H~~~ 1022 (1326)
.+.+.+. ++.||++++|+++
T Consensus 122 ~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHcc----CCEEEEEECCCHH
Confidence 9998876 5899999999865
No 199
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.31 E-value=1.4e-13 Score=162.63 Aligned_cols=175 Identities=16% Similarity=0.140 Sum_probs=111.2
Q ss_pred eEeeecceeEEeCCeE--EEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 046656 835 LVLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTV 912 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv 912 (1326)
.+ |+++|+++++|++ +||+|+||||||||+++|+|..- .|.- +... .....++.++|++|++.+++.+||
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~~ltv 99 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHT--QPGVQLQSNTYDLQESNVRLKLTI 99 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCC--CccceEeeEEEEeecCccccccch
Confidence 34 9999999999999 99999999999999999999742 2211 1110 111224578999999888888999
Q ss_pred HHHHHHHHHhhccCCCC--HHHHHHHHHHHHHHc-CCc----cccccc----cc--CCCCCCCCHHHHHHHHHHHHHhhC
Q 046656 913 YESLLYSAWLRLRTEVD--SETRKMFIEEIMELV-ELK----PLRQSL----VG--LPGESGLSTEQRKRLTIAVELVAN 979 (1326)
Q Consensus 913 ~E~l~f~~~lr~~~~~~--~~~~~~~v~~~l~~l-~l~----~~~~~~----vg--~~~~~~LSgGqrqrl~ia~aL~~~ 979 (1326)
.|++.|+.......... .+......++.|+.. ++. ...|.. +. .+...+|+..+ +.|+++|..+
T Consensus 100 ~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~ 176 (427)
T 2qag_B 100 VSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSK 176 (427)
T ss_dssp EEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSC
T ss_pred hhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhC
Confidence 99987653211000000 001123344555554 433 112222 11 12223577776 7899999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCEEEEEecC
Q 046656 980 PSIIFMDEPTSGLDARAAAIVMRTVKN-TVETGRTVVCTIHQ 1020 (1326)
Q Consensus 980 p~illLDEPtsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1020 (1326)
++||++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 177 ~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 177 VNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999888888888887 76779999988764
No 200
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.30 E-value=1.5e-12 Score=142.12 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=98.5
Q ss_pred eeecce-eEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 046656 837 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYES 915 (1326)
Q Consensus 837 vL~~vs-~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~ 915 (1326)
.|+++. +.+++|++++|+|+||||||||++.|++ ..+ .+.++++... . .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~-----------------~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG-----------------G----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC-----------------C----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC-----------------C----CCH-HH
Confidence 566666 4799999999999999999999999998 221 2333443221 1 011 11
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH--HHHHHHHHHHHhhC-CcEEEEeCCCCCC
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 992 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG--qrqrl~ia~aL~~~-p~illLDEPtsgL 992 (1326)
+.- ..+ ....+. +++++.+.+ . ..+++ +++++..+++++.+ |+++++||||+.+
T Consensus 62 ~~~--~~~-~~~~~~-------~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQ--MAE-TRGLNP-------EEALSRFIL--------F-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHH--HHH-TTTCCH-------HHHHHHEEE--------E-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHH--HHH-hcCCCh-------HHHhhcEEE--------E-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110 000 011111 122222211 1 13333 46789999999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhc-CCEEEEEecCCc------------HHHHHHhceeeEEecC
Q 046656 993 DARA--------AAIVMRTVKNTVET-GRTVVCTIHQPS------------IDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 993 D~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~------------~~~~~~~D~v~~l~~g 1038 (1326)
|+.. ...+++.|++++++ |+|||+++|... ..+...+|.+++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9732 24466667887654 999999999754 1356779999999864
No 201
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.29 E-value=7e-13 Score=156.42 Aligned_cols=131 Identities=19% Similarity=0.266 Sum_probs=97.6
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCee-EEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-SGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYES 915 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~ 915 (1326)
+|++++ +++|++++|+||||||||||+++|+|... +. +|+|.+.|.+... ..++.++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEY-VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCS-CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhh-hhccCceEEEeee-----------
Confidence 677776 79999999999999999999999999764 33 6899777655532 2345567887741
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
+++.. ..+ +.+|+++|..+|++|++|||+ |..
T Consensus 191 ----------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 11110 125 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 996 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
+.. .+++. +..|.+|++|+|+.+ ..+.+||++.|..
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~~ 258 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 258 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTSC
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhcC
Confidence 643 33443 356899999999965 6678899988753
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=3.9e-13 Score=159.87 Aligned_cols=157 Identities=11% Similarity=0.072 Sum_probs=89.1
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCC
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDV 208 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~ 208 (1326)
+++.+++.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|+.|++.
T Consensus 16 ~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~ 85 (418)
T 2qag_C 16 NLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGG 85 (418)
T ss_dssp CCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC-----
T ss_pred ecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCC
Confidence 4445556677999999998 99999999999999999999764311 2222222111 111246899999888
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
.++.+||.||+.|+...... ..+ ..+.+++ +
T Consensus 86 ~~~~Ltv~Dt~g~~~~~~~~-~~~-----------------------------------~~i~~~i-~------------ 116 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDAVDNS-NCW-----------------------------------QPVIDYI-D------------ 116 (418)
T ss_dssp -CEEEEEEECC------------C-----------------------------------HHHHHHH-H------------
T ss_pred cccceeeeechhhhhhccch-hhH-----------------------------------HHHHHHH-H------------
Confidence 88889999999875431100 000 0001111 0
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCc---cceEecCC-CCCCHHHHHHHHHHHHHHHHhcCCEEEEEEec
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPAL---ALFMDEIS-NGLDSSTTFHIVNSLRQNIHILNGTAVISLLQ 355 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~---illLDEpt-sgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q 355 (1326)
..++++.++|++||++++.+|+ ++++|||| .|||+... .+ ++.+. .+.++|+++++
T Consensus 117 -----~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~---lk~L~--~~v~iIlVinK 176 (418)
T 2qag_C 117 -----SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EF---MKRLH--EKVNIIPLIAK 176 (418)
T ss_dssp -----HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HH---HHHHT--TTSEEEEEEES
T ss_pred -----HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HH---HHHHh--ccCcEEEEEEc
Confidence 1356677889999999999999 99999999 69998763 33 33332 23455554443
No 203
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.29 E-value=2.3e-13 Score=148.54 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=97.9
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH----HHHHH
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV----RETLA 220 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 220 (1326)
-..++|++++|+||||||||||+++|+|..+|+ ...|.|.+.+.+.... .++.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 457899999999999999999999999998763 3589999998765432 23467899997554444333 22221
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
+.. + +.|-.
T Consensus 89 ~~~------------------------------------------------------------------~-----~yg~~ 97 (219)
T 1s96_A 89 VFG------------------------------------------------------------------N-----YYGTS 97 (219)
T ss_dssp ETT------------------------------------------------------------------E-----EEEEE
T ss_pred HHh------------------------------------------------------------------c-----cCCCC
Confidence 110 0 01111
Q ss_pred hHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEEEcC
Q 046656 301 KKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 380 (1326)
Q Consensus 301 kqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 380 (1326)
+++ .+.++..++++||| ||+.++.++.+.+. .+.+|+.++|+..++.+ |+ +.+| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 221 23334446999999 99999999988765 35677777888776655 43 7777 678
Q ss_pred hhhHHHHH
Q 046656 381 CELVLDFF 388 (1326)
Q Consensus 381 ~~~~~~~F 388 (1326)
.+++...+
T Consensus 155 ~e~i~~rl 162 (219)
T 1s96_A 155 EEVIAKRM 162 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776544
No 204
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.27 E-value=6.3e-13 Score=155.23 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=43.6
Q ss_pred HHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 305 TTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 305 sia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
+||++|..+|+++++|||+ |..+...+.+ .+. . +.++++++|..+.. +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~-G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-T-GHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-T-TCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-c-CCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 8999999999999999999 7666444333 333 3 44466677776655 889999998665
No 205
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.27 E-value=2e-14 Score=153.68 Aligned_cols=141 Identities=13% Similarity=0.020 Sum_probs=89.3
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHHHHHh
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWL 922 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~l 922 (1326)
.+++|++++|+|+||||||||+++|+|.. ..|.|.++|.+.... ...+.++|++|+.. +..|+.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 36799999999999999999999999973 258899998654211 11234577777543 456888988765432
Q ss_pred hccCCCCHHHHHHHHHHHHHHcCCcccc--cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 046656 923 RLRTEVDSETRKMFIEEIMELVELKPLR--QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1000 (1326)
Q Consensus 923 r~~~~~~~~~~~~~v~~~l~~l~l~~~~--~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i 1000 (1326)
....... ..++.+++..++..+. +..+ ..+|+|++||++++|++.++|+++ +|+.....+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~-----~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTALARPL-----HYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTTCSCE-----EEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhcCCCe-----EEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 1100000 0001111111111111 1111 248999999999999999999876 688777777
Q ss_pred HHHHHHHH
Q 046656 1001 MRTVKNTV 1008 (1326)
Q Consensus 1001 ~~~l~~~~ 1008 (1326)
.+.++.+.
T Consensus 141 ~~~~~~l~ 148 (191)
T 1zp6_A 141 HSQFADLG 148 (191)
T ss_dssp HHHTTCCG
T ss_pred HHHHhccC
Confidence 77665543
No 206
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.26 E-value=8.1e-15 Score=156.53 Aligned_cols=167 Identities=15% Similarity=0.152 Sum_probs=107.9
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTE 927 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~ 927 (1326)
|++++|+||||||||||+++|++. ..|.+.++|.+.... ...|+++|.....+..++++++.+.+......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLA- 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhc-
Confidence 689999999999999999999972 257889988654221 13467777654444567888877643221100
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccC---CCCCCC--CHHHHHHHHHHH------HHhhCCcEEEEeCCCCCCCHHH
Q 046656 928 VDSETRKMFIEEIMELVELKPLRQSLVGL---PGESGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARA 996 (1326)
Q Consensus 928 ~~~~~~~~~v~~~l~~l~l~~~~~~~vg~---~~~~~L--SgGqrqrl~ia~------aL~~~p~illLDEPtsgLD~~~ 996 (1326)
+...+.+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ +||+..
T Consensus 73 -----------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 73 -----------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp -----------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred -----------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 000001110000 000123 778877887777 8899998888884 899988
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecC-CcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 997 AAIVMRTVKNTVETGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 997 ~~~i~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
... ++.++.+.+.+.+||.++|+ ++ ++.+.+|+|+ +.|+++..|+..
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~ 180 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGD 180 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC----
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCC
Confidence 877 88888776567899999998 76 5778899998 468999988764
No 207
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.25 E-value=1.3e-12 Score=153.62 Aligned_cols=137 Identities=18% Similarity=0.122 Sum_probs=99.8
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-ccccceEEEee-cCCCCCCCCCHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-ETFTRISGYCE-QNDIHSPLVTVYE 914 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~-Q~~~~~~~~Tv~E 914 (1326)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|...-. ...++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999998764 48999999854211 12456678887 54321
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 046656 915 SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994 (1326)
Q Consensus 915 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~ 994 (1326)
+++++..++-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012223356667777778899999999985
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 995 RAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 995 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
..+.+.|+.+.....|++.++|..+ ....+||+..|..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2345666666544457899999975 56788999999875
No 208
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.25 E-value=2.3e-13 Score=140.51 Aligned_cols=79 Identities=19% Similarity=0.074 Sum_probs=66.8
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
.+.+++++|+.+++|++++|+||||||||||+++|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+||
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv 91 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLAD 91 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSC
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCc
Confidence 456899999999999999999999999999999999999 76 899999998874221111 2899997777 8999
Q ss_pred HHHHHh
Q 046656 216 RETLAF 221 (1326)
Q Consensus 216 ~E~l~f 221 (1326)
.|++.+
T Consensus 92 ~e~l~~ 97 (158)
T 1htw_A 92 PEELEF 97 (158)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 999965
No 209
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.25 E-value=1.1e-11 Score=129.50 Aligned_cols=89 Identities=21% Similarity=0.262 Sum_probs=68.3
Q ss_pred cccCCChhhhHHHHHHHHhh----cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 292 MVRGISGGQKKRLTTGEMMV----GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~----~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.++++.. +++ +++++|+. .+.+.+|++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~~-~~~~~ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLRD-VMMANADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSCH-HHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEecH-HHHHhCCEE
Confidence 45679999999999999996 56799999999999999999999999998743 344 44456654 577899999
Q ss_pred EEe--cCCeE-EEEcChhhH
Q 046656 368 ILL--SDGQI-VYQGPCELV 384 (1326)
Q Consensus 368 ilL--~~G~i-v~~G~~~~~ 384 (1326)
+.+ .+|.. +...+.++.
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp EEEEEETTEEEEEECCHHHH
T ss_pred EEEEecCCEEEEEEEEcHHH
Confidence 866 46643 233444433
No 210
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.24 E-value=2.3e-14 Score=153.03 Aligned_cols=169 Identities=11% Similarity=0.065 Sum_probs=107.5
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhccCC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 229 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 229 (1326)
|++++|+||||||||||++.|++. . +|.+.++|.++... ...++++|.+...+..|+++++.+.++.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~---~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ---L---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLA 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---S---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc---c---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999983 2 68899998665332 23467777654445568888887654321000
Q ss_pred ccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC---ccccCC--ChhhhHHH
Q 046656 230 SRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD---EMVRGI--SGGQKKRL 304 (1326)
Q Consensus 230 ~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqkqRv 304 (1326)
+-....+...+. +..+.+ |+|+++|+
T Consensus 73 -------------------------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 73 -------------------------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp -------------------------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred -------------------------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 000000000000 011224 89999998
Q ss_pred HHHH------HhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC-hhhHHhhCCeEEEecCCeEEE
Q 046656 305 TTGE------MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP-APETYDLFDDIILLSDGQIVY 377 (1326)
Q Consensus 305 sia~------al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~-~~~~~~~~D~vilL~~G~iv~ 377 (1326)
.++. ++..+++...+|+ +||+..... ++.++.+.. .+.+++..+|. .+++.+.+|+|+ ++|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~--~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI--DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC--CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC--CccEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8777 8888988888884 899988777 777776532 23445555666 778999999998 9999999
Q ss_pred EcChhhH
Q 046656 378 QGPCELV 384 (1326)
Q Consensus 378 ~G~~~~~ 384 (1326)
+|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9987654
No 211
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.23 E-value=1.2e-14 Score=171.99 Aligned_cols=164 Identities=16% Similarity=0.083 Sum_probs=96.1
Q ss_pred eecceeEEEeC--ceEEEEecCCCCChhHHHHHHhcccCCCCcee----eEEEEC----CccCCCCCcc--ceEEEEccC
Q 046656 139 ILKDVSGIIKP--GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVS----GRVTYN----GHDMNEFVPQ--RTAAYISQH 206 (1326)
Q Consensus 139 iL~~vs~~i~~--G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~----G~V~~~----G~~~~~~~~~--~~~~yv~Q~ 206 (1326)
+.+.|+..+++ |+.++|+||||||||||+++|+|.++++ + |++.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 45789999999 9999999999999999999999999886 6 666553 2211 00000 112222221
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 207 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
.. ....|++||+.|. + ....+
T Consensus 233 ~~-~~~~t~~~nl~~~--------------------------------------------------------~-~~~~~- 253 (365)
T 1lw7_A 233 YI-DYAVRHSHKIAFI--------------------------------------------------------D-TDFIT- 253 (365)
T ss_dssp HH-HHHHHHCSSEEEE--------------------------------------------------------S-SCHHH-
T ss_pred HH-HHHHhccCCEEEE--------------------------------------------------------e-CCchH-
Confidence 10 0001111111110 0 00000
Q ss_pred cccCccccCCChhhhHHHHHHHHhh-cCCccceEec---CC------CCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMV-GPALALFMDE---IS------NGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP 356 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~-~~~~illLDE---pt------sgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~ 356 (1326)
.....+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.+ ++.+.|+
T Consensus 254 ----~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~-ililde~ 328 (365)
T 1lw7_A 254 ----TQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVP-YIEIESP 328 (365)
T ss_dssp ----HHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCC-CEEEECS
T ss_pred ----HHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCC-EEEeCCC
Confidence 112235677788888887765 5899999999 65 5899999999999998875433344 4445666
Q ss_pred hhhHHhhCCeEEEec
Q 046656 357 APETYDLFDDIILLS 371 (1326)
Q Consensus 357 ~~~~~~~~D~vilL~ 371 (1326)
. +..+++|.+.+++
T Consensus 329 ~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 329 S-YLDRYNQVKAVIE 342 (365)
T ss_dssp S-HHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHH
Confidence 3 5556666665554
No 212
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.22 E-value=2.6e-14 Score=168.99 Aligned_cols=163 Identities=12% Similarity=0.056 Sum_probs=98.9
Q ss_pred eeecceeEEeC--CeEEEEeccCCCChhhHHhhhcCCCCCCeeE----EEEEEc----CccCC--cccccceEEEeecCC
Q 046656 837 LLNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIS----GNITIS----GYPKK--QETFTRISGYCEQND 904 (1326)
Q Consensus 837 vL~~vs~~i~~--Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~----G~i~i~----g~~~~--~~~~~~~~gyv~Q~~ 904 (1326)
+.+.|++.|++ |++++|+|+||||||||+++|+|... +.. |+|.++ |.+.. ...+ +.+++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 35679999999 99999999999999999999999876 345 666553 21110 0001 1122222211
Q ss_pred CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCcEE
Q 046656 905 IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV-ANPSII 983 (1326)
Q Consensus 905 ~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~-~~p~il 983 (1326)
..+ ..|+.||+.|. + .+..+..+ ..+|+|++|+..+++++. .+|+++
T Consensus 234 ~~~-~~t~~~nl~~~-------------------------~-~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDY-AVRHSHKIAFI-------------------------D-TDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHH-HHHHCSSEEEE-------------------------S-SCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHH-HHhccCCEEEE-------------------------e-CCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 000 01111111000 0 00001111 125677788888888775 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 984 FMDE---PT------SGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 984 lLDE---Pt------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
|||| |+ +++|...+..+.+.|+++.+ .|.+||+++|. + +....+|++.+++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 68999999999999988754 48999999975 3 4556677777665
No 213
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.22 E-value=5.5e-15 Score=171.16 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=100.6
Q ss_pred eEEEEeccCCCChhhHHhhhcCCCCC------CeeEEEEEEcCccCCcc------------------cccceEEEe---e
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGRKTG------GYISGNITISGYPKKQE------------------TFTRISGYC---E 901 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 901 (1326)
++++|+|+||||||||++.|.|...+ .+..|+|.|||.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999987521 13579999999775321 233445666 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--Hh-hccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 046656 902 QNDIHSPLVTVYESLLYSA--WL-RLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVA 978 (1326)
Q Consensus 902 Q~~~~~~~~Tv~E~l~f~~--~l-r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~ 978 (1326)
|+....+..++.|+..++. .+ +.....+...+...++.++..+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 7665556677777664421 00 00000000000011222333344444444332 489999999998899999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 046656 979 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1022 (1326)
Q Consensus 979 ~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1022 (1326)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67788888864 5899999999764
No 214
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.18 E-value=4.9e-12 Score=134.92 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=87.9
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHHHHHhhhh
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-PQRTAAYISQHDVHIGEMTVRETLAFSAR 224 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 224 (1326)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... .++.++|++|+.. +++||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 33 799999997653221 1234678887643 46789999877543
Q ss_pred hccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHH
Q 046656 225 CQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRL 304 (1326)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRv 304 (1326)
....+..... + +.+++.++++..... +..+..+|+|++||+
T Consensus 78 ~~~~~~~~~~------------------~------------------~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYAKEGYFVI------------------L------------------DGVVRPDWLPAFTAL---ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HHHHTSCEEE------------------E------------------CSCCCTTTTHHHHTT---CSCEEEEEEECCHHH
T ss_pred HHhccCCeEE------------------E------------------eccCcHHHHHHHHhc---CCCeEEEEecCCHHH
Confidence 2100000000 0 000000011111100 112346999999999
Q ss_pred HHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHH
Q 046656 305 TTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLR 339 (1326)
Q Consensus 305 sia~al~~~~~illLDEptsgLD~~t~~~i~~~l~ 339 (1326)
.++|++..+|+++ +|+.....+.+.++
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~ 145 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFA 145 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHh
Confidence 9999999999876 57776666655544
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.18 E-value=6.9e-11 Score=128.80 Aligned_cols=77 Identities=13% Similarity=-0.020 Sum_probs=56.7
Q ss_pred CChhh--hHHHHHHHHhhcC-CccceEecCCCCCCHHH--------HHHHHHHHHHHHHhcCCEEEEEEecChh------
Q 046656 296 ISGGQ--KKRLTTGEMMVGP-ALALFMDEISNGLDSST--------TFHIVNSLRQNIHILNGTAVISLLQPAP------ 358 (1326)
Q Consensus 296 LSGGq--kqRvsia~al~~~-~~illLDEptsgLD~~t--------~~~i~~~l~~~~~~~~~t~ii~i~q~~~------ 358 (1326)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.+++ .++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi-~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVI-VINQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEE-EEECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEE-EEeeEEEcCCCCc
Confidence 45554 5678888899875 99999999999999732 35566678887765555544 5666543
Q ss_pred -------hHHhhCCeEEEecCC
Q 046656 359 -------ETYDLFDDIILLSDG 373 (1326)
Q Consensus 359 -------~~~~~~D~vilL~~G 373 (1326)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 467889999999754
No 216
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.17 E-value=9.7e-13 Score=142.46 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=52.0
Q ss_pred HHHHcCCcccccccccCccccCCChhhhHH-HHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHH
Q 046656 274 YLKVLGLDVCADTLVGDEMVRGISGGQKKR-LTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIH 343 (1326)
Q Consensus 274 ~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR-vsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~ 343 (1326)
.++..++... .+++ +...+|+||||| +..+++++.+|+.+++|||||++|.....++++.|.+...
T Consensus 132 ~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 132 WAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 4455565532 1232 234589999999 8899999999999999999999999999999999988653
No 217
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.16 E-value=7.1e-14 Score=155.92 Aligned_cols=148 Identities=15% Similarity=0.174 Sum_probs=97.8
Q ss_pred CCeEEEEeccCCCChhhHHhhhc---CCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHh-
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWL- 922 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~l- 922 (1326)
++++++|+|+||||||||+++|+ |... +..|+|.++|.+... ...+.+++++|+..+.+..++.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 9765 557888877754321 1223345567777778888999998764310
Q ss_pred -h---ccCCCCHHHHHHHHHHHHHH--cC------------CcccccccccCCCCCCCCHHHHHHHHHHHHH-hhCCcEE
Q 046656 923 -R---LRTEVDSETRKMFIEEIMEL--VE------------LKPLRQSLVGLPGESGLSTEQRKRLTIAVEL-VANPSII 983 (1326)
Q Consensus 923 -r---~~~~~~~~~~~~~v~~~l~~--l~------------l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL-~~~p~il 983 (1326)
. .....+... ..++.+.+. ++ +..+.++.+ ..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~-----~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWI-----HPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE-----ETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCC-----cCCCC----Cc---cccccCCCccc
Confidence 0 000111111 112222211 12 112222322 24888 55 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhcC
Q 046656 984 FMD----EPTSGLDARAAAIVMRTVKNTVETG 1011 (1326)
Q Consensus 984 lLD----EPtsgLD~~~~~~i~~~l~~~~~~g 1011 (1326)
+|| |||++||..+...+.+.++++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999876653
No 218
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.16 E-value=6.8e-12 Score=147.54 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=52.6
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-ccceEEEEc-cCC
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-PQRTAAYIS-QHD 207 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~-Q~d 207 (1326)
+++++|+.+++|++++|+||||||||||+++|+|.++|+ +|.|+++|..--... .++.++|++ |++
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEA 231 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC---
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcc
Confidence 449999999999999999999999999999999999987 899999985311111 345678888 543
No 219
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.15 E-value=8e-11 Score=139.27 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=67.3
Q ss_pred CCCCHHHHHHH------HHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhcee
Q 046656 960 SGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDEL 1032 (1326)
Q Consensus 960 ~~LSgGqrqrl------~ia~aL~~~-p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1032 (1326)
..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 46999999988 567889999 99999999999999999999999999864 3579999999975 56789999
Q ss_pred eEEecCc
Q 046656 1033 FLMKRGG 1039 (1326)
Q Consensus 1033 ~~l~~gg 1039 (1326)
++|.+.|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9998544
No 220
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.15 E-value=2.9e-11 Score=133.92 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=85.1
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCC--CCC---CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLL 917 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~ 917 (1326)
+-+++|++++|+||||||||||++.|++. ..+ +...|.+++++.... ...+...
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------CHHHHHH
Confidence 56999999999999999999999999983 321 112567777664310 0000000
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH-HHHHHHHHh--hCCcEEEEeCCCCCCCH
Q 046656 918 YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK-RLTIAVELV--ANPSIIFMDEPTSGLDA 994 (1326)
Q Consensus 918 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq-rl~ia~aL~--~~p~illLDEPtsgLD~ 994 (1326)
....+ .... +++++.+.+ . ...+..+.. .+.-+.+++ .+|+++++|||++.+|+
T Consensus 78 ~~~~~----g~~~-------~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERY----GLSG-------SDVLDNVAY-------A-----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHT----TCCH-------HHHHHTEEE-------E-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHc----CCCH-------HHHhhCeEE-------E-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 00000 1111 112221100 0 124555433 233344444 47999999999999997
Q ss_pred H-------H-----HHHHHHHHHHHHh-cCCEEEEEecCCcHHHH-------------------HHhceeeEEecC
Q 046656 995 R-------A-----AAIVMRTVKNTVE-TGRTVVCTIHQPSIDIF-------------------EAFDELFLMKRG 1038 (1326)
Q Consensus 995 ~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~-------------------~~~D~v~~l~~g 1038 (1326)
. + ...+++.|+++++ .|+|||+++|... +.. ..+|.+++|.++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 3445666666654 4999999999643 221 168999999864
No 221
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.15 E-value=9.8e-13 Score=146.63 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=96.1
Q ss_pred CceEEEEecCCCCChhHHHHHHh---cccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALA---GQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 225 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 225 (1326)
++++++|+||||||||||+++|+ |...++ .|+|.++|.+... ...+.+.++.|+..+++..|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999 988765 7888887754321 0123345567777778888999999874321
Q ss_pred --------ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCC
Q 046656 226 --------QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGIS 297 (1326)
Q Consensus 226 --------~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 297 (1326)
.+..... .+. .....-..++..+ +.+ .. .+..+ +. +.++.+..||
T Consensus 102 ~~~~~~il~g~~~~~---~~~--~~l~~~~~~~~vi--~L~---~~-------~~~~l-----~r-----~~~r~~~~lS 154 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL---GQA--EALDKICEVDLVI--SLN---IP-------FETLK-----DR-----LSRRWIHPPS 154 (246)
T ss_dssp CTTSCEEEESCCCSH---HHH--HHHHTTCCCCEEE--EEE---CC-------HHHHH-----HH-----HHTEEEETTT
T ss_pred cCCCeEEEECCCCCH---HHH--HHHHhhcCCCEEE--EEE---CC-------HHHHH-----HH-----HHcCCCcCCC
Confidence 1110000 000 0000000011000 000 00 00000 01 1123455699
Q ss_pred hhhhHHHHHHHHh-hcCCccceEe----cCCCCCCHHHHHHHHHHHHHHHH
Q 046656 298 GGQKKRLTTGEMM-VGPALALFMD----EISNGLDSSTTFHIVNSLRQNIH 343 (1326)
Q Consensus 298 GGqkqRvsia~al-~~~~~illLD----EptsgLD~~t~~~i~~~l~~~~~ 343 (1326)
| || +++ +.+|++++|| |||+|||..+...+.+.++++..
T Consensus 155 g----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 155 G----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp T----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred C----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 9 66 677 9999999999 99999999999999999887644
No 222
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=6e-12 Score=148.83 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=104.4
Q ss_pred cccceeecceeEEEeCceE--EEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRM--TLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIG 211 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~--~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 211 (1326)
++..+ |+++|+.+++|++ ++|+||||||||||+++|+|..- .|...... .....++.++|++|++.+++
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~---~~~~~~~~i~~v~Q~~~l~~ 95 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHT---QPGVQLQSNTYDLQESNVRL 95 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C---CSSCEEEEEEEEEEC--CEE
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCC---CccceEeeEEEEeecCcccc
Confidence 34455 9999999999999 99999999999999999999841 23211100 01112357899999988888
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHc-CCcc----cccc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVL-GLDV----CADT 286 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~----~~dt 286 (1326)
.+||.||+.|+..... ..+... +. .......+.+|... ++.. ..|+
T Consensus 96 ~ltv~D~~~~g~~~~~---------~~~~~~----------i~----------~~i~~q~~~~L~e~~~i~r~l~~~~d~ 146 (427)
T 2qag_B 96 KLTIVSTVGFGDQINK---------EDSYKP----------IV----------EFIDAQFEAYLQEELKIRRVLHTYHDS 146 (427)
T ss_dssp EEEEEEEECCCC-CCH---------HHHSHH----------HH----------HHHHHHHHHHHHHC--CCCCCCCSCC-
T ss_pred ccchhhhhhhhhcccc---------chhhhH----------HH----------HHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 9999999987643110 000000 00 00111223334433 4431 1222
Q ss_pred c----cc--CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Q 046656 287 L----VG--DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVIS 352 (1326)
Q Consensus 287 ~----vg--~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~ 352 (1326)
. +. .+...+|+-.+ +.++++|..+++|+++|||+..|.+.....+.+.+++.... .+..|+.
T Consensus 147 rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~-~gi~I~~ 214 (427)
T 2qag_B 147 RIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS-NGVQIYQ 214 (427)
T ss_dssp -CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-TBCCCCC
T ss_pred cccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-cCCcEEe
Confidence 2 11 11123566666 78999999999999999999999998888888888863222 3444443
No 223
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.13 E-value=5e-13 Score=139.75 Aligned_cols=112 Identities=20% Similarity=0.126 Sum_probs=70.9
Q ss_pred eEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------cc-ceEE----EEccCCCCCCCCCHHHHH
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQ-RTAA----YISQHDVHIGEMTVRETL 219 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 219 (1326)
++++|+|+||||||||++.|+|.+++.....|.|.++|.++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999875333699999998854432 12 2455 788876544 000
Q ss_pred HhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChh
Q 046656 220 AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGG 299 (1326)
Q Consensus 220 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 299 (1326)
+ . .+. .+ ..+.+++. .|+ ..||.+++ +||||
T Consensus 77 -------~--~-----~~~-----~a------------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--S-----EEE-----GN------------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--C-----HHH-----HT------------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--C-----hhh-----hh------------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 0 000 00 01222333 023 56899986 59999
Q ss_pred hhHHHHHHHHhhcCCccc
Q 046656 300 QKKRLTTGEMMVGPALAL 317 (1326)
Q Consensus 300 qkqRvsia~al~~~~~il 317 (1326)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999874
No 224
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.13 E-value=9.6e-12 Score=144.31 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=85.1
Q ss_pred eecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEc-CccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 046656 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITIS-GYPKKQETFTRISGYCEQNDIHSPLVTVYESL 916 (1326)
Q Consensus 838 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l 916 (1326)
+++++.. .+|++++|+|+||||||||+|+|+|.... +.+|+|.++ |.+.. ....+.+++++|+..+++..+++|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh-
Confidence 3344442 37999999999999999999999997651 347999887 76543 2345678999999888888888883
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 046656 917 LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVEL 976 (1326)
Q Consensus 917 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL 976 (1326)
. + ...+.++..+.+.++++.+++.++.+.... ++| ||+||++||+++
T Consensus 282 --~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GCAIREAVENGA 328 (358)
T ss_dssp --C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TCHHHHHHHHTS
T ss_pred --h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HHHHHHHHHhcC
Confidence 1 1 134555556678889999999888877653 599 999999999875
No 225
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.11 E-value=4.1e-12 Score=151.05 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=98.3
Q ss_pred eecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 046656 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLL 917 (1326)
Q Consensus 838 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~ 917 (1326)
-+++++++++|+.++|+|+|||||||||++|+|... .+.+++... ....+|++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999642 234443321 2234566665431 1111111110
Q ss_pred HHHHhhccCCCCHHHHH--HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 918 YSAWLRLRTEVDSETRK--MFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 918 f~~~lr~~~~~~~~~~~--~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
+.........+.....+ ++++.++..+++. +..+ ..||+|++|++.+|++|+.+|.||++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~-----~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPL-----KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHH-----HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCH-----HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000011111000 0111222222332 1121 35999999999999999999999999 999987
Q ss_pred HHHHHHHHHHHH-HhcCCEEEEEecCCcHHHHHHhceee
Q 046656 996 AAAIVMRTVKNT-VETGRTVVCTIHQPSIDIFEAFDELF 1033 (1326)
Q Consensus 996 ~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~D~v~ 1033 (1326)
.+ ..++.+++. .+.|.+++.+|..-...+.++++.+.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 76 444444444 34577776655332334666666554
No 226
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.10 E-value=1.2e-11 Score=147.92 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=101.9
Q ss_pred eecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-------c--ccceEEEeecCCCCCC
Q 046656 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-------T--FTRISGYCEQNDIHSP 908 (1326)
Q Consensus 838 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~--~~~~~gyv~Q~~~~~~ 908 (1326)
-+++|+++++|++++|+|+||||||||+++|+|... +..|+|.++|.+.... . .++.++|++|+....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 358899999999999999999999999999999765 3468999987664321 1 2456899999988888
Q ss_pred CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-hCC-cEEEEe
Q 046656 909 LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV-ANP-SIIFMD 986 (1326)
Q Consensus 909 ~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~-~~p-~illLD 986 (1326)
..|+++++.+... + +.+ .+ +++..|+.+... .+-..-+|++.+++++. ..| .+||..
T Consensus 361 ~~tV~e~l~~a~~-~---~~D------vV--LIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKA-R---NID------VL--IADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHH-T---TCS------EE--EECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHh-c---CCC------EE--EEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8899999987532 1 110 00 111122211110 12223457888888764 456 456555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEec
Q 046656 987 EPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIH 1019 (1326)
Q Consensus 987 EPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H 1019 (1326)
.||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 589886654 22344332 3889999999
No 227
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.09 E-value=1.3e-11 Score=145.59 Aligned_cols=131 Identities=18% Similarity=0.276 Sum_probs=92.2
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRET 218 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 218 (1326)
+|++++ +++|++++|+|||||||||||++|+|.+++. -+|+|.+.|.++. ...+..++||+|...
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~---------- 191 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQREV---------- 191 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEEB----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeeec----------
Confidence 677776 7899999999999999999999999998752 1699977776553 233445677777410
Q ss_pred HHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCCh
Q 046656 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISG 298 (1326)
Q Consensus 219 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 298 (1326)
|++ ...+
T Consensus 192 ------------------------------------------------------------g~~-----------~~~~-- 198 (372)
T 2ewv_A 192 ------------------------------------------------------------GED-----------TKSF-- 198 (372)
T ss_dssp ------------------------------------------------------------TTT-----------BSCS--
T ss_pred ------------------------------------------------------------CCC-----------HHHH--
Confidence 010 0123
Q ss_pred hhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 299 GQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 299 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
+.+|+++|..+|+++++|||+ |..+.... ++. +. . +..+++.+|.. ++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~~---l~~-~~-~-g~~vi~t~H~~-~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AE-T-GHLVFGTLHTN-TAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHHH---HHH-HT-T-TCEEEECCCCC-SHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHHH---HHH-Hh-c-CCEEEEEECcc-hHHHHHHHHHHhc
Confidence 468999999999999999999 77664443 333 22 2 44556666664 4778888887664
No 228
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.09 E-value=5.1e-12 Score=130.38 Aligned_cols=78 Identities=22% Similarity=0.093 Sum_probs=64.9
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
+.+++++|+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++......+ .+++|+..++ .+||.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999977 4 4799999998764221111 3789988777 899999
Q ss_pred HHHH
Q 046656 915 SLLY 918 (1326)
Q Consensus 915 ~l~f 918 (1326)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
No 229
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.08 E-value=7.5e-11 Score=130.61 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=27.4
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
+-+++|++++|+||||||||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999999999994
No 230
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.08 E-value=6.2e-13 Score=139.04 Aligned_cols=139 Identities=16% Similarity=0.204 Sum_probs=83.4
Q ss_pred eEEEEeccCCCChhhHHhhhcCCCCC-CeeEEEEEEcCccCCc------cccc-ceEE----EeecCCCCCCCCCHHHHH
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGRKTG-GYISGNITISGYPKKQ------ETFT-RISG----YCEQNDIHSPLVTVYESL 916 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~------~~~~-~~~g----yv~Q~~~~~~~~Tv~E~l 916 (1326)
++++|+|+||||||||++.|+|...+ +...|.|.++|.++.. ..++ +.+| +++|+..++ +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i---- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----I---- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----E----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----E----
Confidence 57999999999999999999997642 2337999999987321 2333 3466 788865543 0
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHH-cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE-------EEeCC
Q 046656 917 LYSAWLRLRTEVDSETRKMFIEEIMEL-VELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSII-------FMDEP 988 (1326)
Q Consensus 917 ~f~~~lr~~~~~~~~~~~~~v~~~l~~-l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~il-------lLDEP 988 (1326)
+. ...+ ....++++++. +. -.|+.++. +||||||||++|||+++.+|++. .-|.|
T Consensus 75 ------~~---~~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 75 ------RR---VSEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------EE---CCHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------ec---CChh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 10 0111 11134555555 43 24666664 59999999999999999998762 23454
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhcCC
Q 046656 989 TSG---LDARAAAIVMRTVKNTVETGR 1012 (1326)
Q Consensus 989 tsg---LD~~~~~~i~~~l~~~~~~g~ 1012 (1326)
..+ +|......+.+.+.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 233344556666665555543
No 231
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.08 E-value=4.5e-11 Score=126.32 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=42.0
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcH
Q 046656 977 VANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1023 (1326)
Q Consensus 977 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 1023 (1326)
+.+|++|+||||++ ++|+..+..+.+.+....++|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999995 999999999999999887789999999998753
No 232
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.08 E-value=1.6e-11 Score=139.54 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=83.7
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhh--
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARC-- 225 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~-- 225 (1326)
+++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++ .++++++.++..-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCC-hHHHHHHhccccccc
Confidence 46889999999999999999999999864 22 0 1234566699988775 4889999876311
Q ss_pred ----ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc------cccCccccC
Q 046656 226 ----QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT------LVGDEMVRG 295 (1326)
Q Consensus 226 ----~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------~vg~~~~~~ 295 (1326)
++....++ .+ .....++.+.- ..+| .+ ......
T Consensus 92 l~~~~g~p~a~d-------------------~~---------------~l~~~l~~l~~--g~~t~~~~~v~~-p~y~~~ 134 (290)
T 1odf_A 92 LLQGRGLPGTHD-------------------MK---------------LLQEVLNTIFN--NNEHPDQDTVVL-PKYDKS 134 (290)
T ss_dssp GGSSSCSTTSBC-------------------HH---------------HHHHHHHHHTC--------CCEEEE-CCEETT
T ss_pred hhhhccCcchhH-------------------HH---------------HHHHHHHHhhc--cCccccCcceee-ccCccc
Confidence 11111111 00 11223344322 2111 11 134467
Q ss_pred CChhhhHHHHHH--HHhhcCCccceEecCCCCCCHHH
Q 046656 296 ISGGQKKRLTTG--EMMVGPALALFMDEISNGLDSST 330 (1326)
Q Consensus 296 LSGGqkqRvsia--~al~~~~~illLDEptsgLD~~t 330 (1326)
+||||+||+++| +++ +|+|+|+||+++++|+..
T Consensus 135 ~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 135 QFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred cCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 999999999997 555 899999999999999853
No 233
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.07 E-value=7.7e-11 Score=120.51 Aligned_cols=44 Identities=9% Similarity=0.173 Sum_probs=36.7
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE-EEEEecCC
Q 046656 977 VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT-VVCTIHQP 1021 (1326)
Q Consensus 977 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~ 1021 (1326)
+.+|++|++|||++ +|...+..+.+.+.++.++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 45799999999998 6655588899999988877888 88899964
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.07 E-value=1.9e-11 Score=141.84 Aligned_cols=122 Identities=19% Similarity=0.126 Sum_probs=79.7
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC-CCCceeeEEEEC-CccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD-SSLKVSGRVTYN-GHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHH
Confidence 35666664 4799999999999999999999999998 76 8999987 755432 2345789999998888999999
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
|+ +. .+. ...+ .....+++++.+|+....|. ...++
T Consensus 280 e~---~l--~~l----------~~~e------------------------~~~~~~e~l~~~gl~~f~~~-----~~~~l 315 (358)
T 2rcn_A 280 EF---GL--WHL----------EPEQ------------------------ITQGFVEFHDYLGHCKYRDC-----KHDAD 315 (358)
T ss_dssp TC---CC--CCC----------CHHH------------------------HHHTSGGGGGGTTCSSSTTC-----CSSSC
T ss_pred Hh---hh--cCC----------CHHH------------------------HHHHHHHHHHHcCCchhcCC-----CcccC
Confidence 83 21 110 0000 01112345677787665553 45579
Q ss_pred ChhhhHHHHHHHHh
Q 046656 297 SGGQKKRLTTGEMM 310 (1326)
Q Consensus 297 SGGqkqRvsia~al 310 (1326)
| ||+||++||+++
T Consensus 316 S-G~~~r~ala~gl 328 (358)
T 2rcn_A 316 P-GCAIREAVENGA 328 (358)
T ss_dssp T-TCHHHHHHHHTS
T ss_pred C-HHHHHHHHHhcC
Confidence 9 999999999764
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.05 E-value=1.4e-11 Score=142.34 Aligned_cols=143 Identities=13% Similarity=0.090 Sum_probs=95.2
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cccce--EEEeecCCCCCCCCCHHHH
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-------TFTRI--SGYCEQNDIHSPLVTVYES 915 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gyv~Q~~~~~~~~Tv~E~ 915 (1326)
.++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+.+. +.+++|.....|..||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999765 3478999999876321 11223 4599999888899999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
+.++.... .+. -+++..|+.+..+. =.++.-.|++++..++.+++||.+| |.
T Consensus 204 l~~~~~~~--~d~----------vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t-~~--- 255 (328)
T 3e70_C 204 IQHAKARG--IDV----------VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALA-GN--- 255 (328)
T ss_dssp HHHHHHHT--CSE----------EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGG-TT---
T ss_pred HHHHHhcc--chh----------hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHH-HH---
Confidence 98653210 000 01111222221111 1223334889999888888999555 43
Q ss_pred HHHHHHHHHHHHH-hcCCEEEEEecC
Q 046656 996 AAAIVMRTVKNTV-ETGRTVVCTIHQ 1020 (1326)
Q Consensus 996 ~~~~i~~~l~~~~-~~g~tvi~~~H~ 1020 (1326)
.+++.++.+. ..+.|+|++||.
T Consensus 256 ---~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 ---AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp ---HHHHHHHHHHHHSCCCEEEEECG
T ss_pred ---HHHHHHHHHHHhcCCCEEEEeCc
Confidence 3445555554 348999999994
No 236
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.05 E-value=2.1e-10 Score=138.48 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 961 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
.||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+.|.++|+|||++ ...+.+|+++.|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 59999999999999999 58999999999999999999999999999865588999999985 4677899999997
Q ss_pred c
Q 046656 1037 R 1037 (1326)
Q Consensus 1037 ~ 1037 (1326)
.
T Consensus 411 ~ 411 (430)
T 1w1w_A 411 R 411 (430)
T ss_dssp E
T ss_pred E
Confidence 4
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.04 E-value=4.2e-11 Score=143.20 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=68.9
Q ss_pred ecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC------C---ccceEEEEccCCCCC
Q 046656 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF------V---PQRTAAYISQHDVHI 210 (1326)
Q Consensus 140 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~---~~~~~~yv~Q~d~~~ 210 (1326)
-+++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999876 89999987765321 0 135689999998878
Q ss_pred CCCCHHHHHHhhh
Q 046656 211 GEMTVRETLAFSA 223 (1326)
Q Consensus 211 ~~lTV~E~l~f~~ 223 (1326)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999999864
No 238
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.03 E-value=1.5e-12 Score=151.53 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=109.2
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC-------CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF-------VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~ 208 (1326)
...+|+++|+.+++|++++|+||||||||||+++|+|.+.|. +|+|.+.|.+.... ..++.++|++|++.
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 117 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCcc
Confidence 346899999999999999999999999999999999999876 89999999776432 12456899999877
Q ss_pred CCCCC------------CHHHHHHhhhhhc--------cCCccchhhhHhHHHHHHhCC-----CCchhHHHHHHHhhhh
Q 046656 209 HIGEM------------TVRETLAFSARCQ--------GVGSRYDMLTELARREKEAGI-----KPDLFIDVFMKAAATE 263 (1326)
Q Consensus 209 ~~~~l------------TV~E~l~f~~~~~--------~~~~~~~~~~~~~~~~~~~~i-----~pd~~~~~~~~~~~~~ 263 (1326)
.++.. +++|.+.. .... .+|-... +. ..+..+++ .+.. .+..
T Consensus 118 ~~~~~~~~~~~l~G~tr~~~e~~~~-~~~~~~~~iliDT~Gi~~~---~~-~v~~~~d~vl~v~d~~~-~~~~------- 184 (337)
T 2qm8_A 118 AFIRPSPSSGTLGGVAAKTRETMLL-CEAAGFDVILVETVGVGQS---ET-AVADLTDFFLVLMLPGA-GDEL------- 184 (337)
T ss_dssp EEEECCCCCSSHHHHHHHHHHHHHH-HHHTTCCEEEEEECSSSSC---HH-HHHTTSSEEEEEECSCC------------
T ss_pred cccccCcccccccchHHHHHHHHHH-HhcCCCCEEEEECCCCCcc---hh-hHHhhCCEEEEEEcCCC-cccH-------
Confidence 76532 23333311 0000 0110000 00 00011110 0000 0000
Q ss_pred hHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhc------CCccceEecCCCCCCHHHHHHHHHH
Q 046656 264 GQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG------PALALFMDEISNGLDSSTTFHIVNS 337 (1326)
Q Consensus 264 ~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~------~~~illLDEptsgLD~~t~~~i~~~ 337 (1326)
+..+.....+...+.+. ..|. .....+|+|++|++..+.+++. .|++++ +|++|......+++.
T Consensus 185 -~~i~~~i~~~~~ivvlN-K~Dl----~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~ 254 (337)
T 2qm8_A 185 -QGIKKGIFELADMIAVN-KADD----GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSR 254 (337)
T ss_dssp ---CCTTHHHHCSEEEEE-CCST----TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHH
T ss_pred -HHHHHHHhccccEEEEE-chhc----cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHH
Confidence 00000011111222221 1121 1124579999999999998887 577776 999999999999999
Q ss_pred HHHHH
Q 046656 338 LRQNI 342 (1326)
Q Consensus 338 l~~~~ 342 (1326)
+.+..
T Consensus 255 I~~~~ 259 (337)
T 2qm8_A 255 IEDHR 259 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
No 239
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.03 E-value=1.2e-12 Score=152.31 Aligned_cols=165 Identities=13% Similarity=0.131 Sum_probs=105.0
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cccceEEEeecCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-------TFTRISGYCEQNDIHS 907 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~~~~~ 907 (1326)
+.+|+++|+++++|++++|+|+||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++..+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 358999999999999999999999999999999999764 3468899988765321 2345689999987776
Q ss_pred CCC------------CHHHHHHHHH-------------------HhhccC-------CCC-HHHHHHHHHHHHHHcCCc-
Q 046656 908 PLV------------TVYESLLYSA-------------------WLRLRT-------EVD-SETRKMFIEEIMELVELK- 947 (1326)
Q Consensus 908 ~~~------------Tv~E~l~f~~-------------------~lr~~~-------~~~-~~~~~~~v~~~l~~l~l~- 947 (1326)
+.. +++|.+...- .+.... +.. ..........+++...+-
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv 199 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA 199 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE
Confidence 432 2333331100 000000 000 000000000111221111
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 046656 948 -PLRQSLVGLPGESGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009 (1326)
Q Consensus 948 -~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1009 (1326)
+..|.. ....+|+|++|++..+++++. +|++++ ||++|......+++.|.+...
T Consensus 200 lNK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 112211 012479999999999999987 688887 999999999999999987653
No 240
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.03 E-value=7.6e-13 Score=153.12 Aligned_cols=165 Identities=14% Similarity=0.096 Sum_probs=95.9
Q ss_pred ceEEEEecCCCCChhHHHHHHhccc--------CCCCceeeEEEECCccCCCCCc------------------cceEEEE
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQL--------DSSLKVSGRVTYNGHDMNEFVP------------------QRTAAYI 203 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~--------~~~~~~~G~V~~~G~~~~~~~~------------------~~~~~yv 203 (1326)
=++++|+|+|||||||||+.|+|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 444 8999999987654311 1234555
Q ss_pred ---ccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCC
Q 046656 204 ---SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGL 280 (1326)
Q Consensus 204 ---~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 280 (1326)
+|+..++++.+|.||..++... .....+..... .......+.++..+++
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~---------------------~~~~~~l~~~l~~vd~ 132 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEV---------------------LCQRYLLDGVIALVDA 132 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHH---------------------HHHHEEEEEEEEEEET
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCcc---------------------ccCeEEECCEEEEEEH
Confidence 4655445566666666543110 00000000000 0000000111222233
Q ss_pred cccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhH
Q 046656 281 DVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPET 360 (1326)
Q Consensus 281 ~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 360 (1326)
.+..+.. ..+|||||||+..+++++.+|+++ ||| ..+.+.++++. .+.+|+.++|...+.
T Consensus 133 ~~~~~~~------~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~---~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 133 VHADEQM------NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN---ARAPVYTVTHGDIDL 192 (318)
T ss_dssp TTHHHHH------HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC---SSSCEEECCSSCCCG
T ss_pred HHHHHHH------hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC---CCCeEEEecccCCCH
Confidence 3322221 158999999998888888999887 998 67777777753 345555566654344
Q ss_pred HhhCC
Q 046656 361 YDLFD 365 (1326)
Q Consensus 361 ~~~~D 365 (1326)
..++|
T Consensus 193 ~~l~~ 197 (318)
T 1nij_A 193 GLLFN 197 (318)
T ss_dssp GGGSC
T ss_pred HHHhC
Confidence 33443
No 241
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.99 E-value=4.8e-11 Score=137.80 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=62.1
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---------cceEEEEccCCCCCCCCCHHH
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---------QRTAAYISQHDVHIGEMTVRE 217 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 217 (1326)
.++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... +..+.|++|...+.|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 4689999999999999999999999999887 8999999988653321 123569999988889999999
Q ss_pred HHHhhh
Q 046656 218 TLAFSA 223 (1326)
Q Consensus 218 ~l~f~~ 223 (1326)
++.++.
T Consensus 203 ~l~~~~ 208 (328)
T 3e70_C 203 AIQHAK 208 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 242
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.97 E-value=2.6e-11 Score=137.80 Aligned_cols=132 Identities=11% Similarity=0.054 Sum_probs=83.9
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHH---h
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAW---L 922 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~---l 922 (1326)
+++.+++|.|++|||||||.+.|.+.... .| .. ++.+.+|+|++.+++. ++++++.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~~------~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------GG------EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------GG------GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------CC------CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 46889999999999999999999986542 11 10 2345566999988764 78888877521 1
Q ss_pred hccCCCCHHHHHHHHHHHHHHcCCcc--c--ccccccCCCCCCCCHHHHHHHHHH--HHHhhCCcEEEEeCCCCCCCHHH
Q 046656 923 RLRTEVDSETRKMFIEEIMELVELKP--L--RQSLVGLPGESGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGLDARA 996 (1326)
Q Consensus 923 r~~~~~~~~~~~~~v~~~l~~l~l~~--~--~~~~vg~~~~~~LSgGqrqrl~ia--~aL~~~p~illLDEPtsgLD~~~ 996 (1326)
....+.+.....+...+.++.+...- . ....+. .....+||||+||+.+| +++ +|+|||+|||++++|+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 11001111111233455666654320 0 000011 01246899999999997 555 999999999999999853
No 243
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.97 E-value=2.9e-13 Score=165.50 Aligned_cols=177 Identities=11% Similarity=0.015 Sum_probs=105.0
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC-------
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHS------- 907 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~------- 907 (1326)
..+++++++.+++|+.++|+||||||||||+++|+|..++ .+|.|.++|.+.-.......+++..|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 3478999999999999999999999999999999998764 4799999986521111123445555443311
Q ss_pred ---------------CCCCHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHHHcCCcc---------cccccccCCCCCCC
Q 046656 908 ---------------PLVTVYESLLYSAWLRLRTE-VDSETRKMFIEEIMELVELKP---------LRQSLVGLPGESGL 962 (1326)
Q Consensus 908 ---------------~~~Tv~E~l~f~~~lr~~~~-~~~~~~~~~v~~~l~~l~l~~---------~~~~~vg~~~~~~L 962 (1326)
..++..|++.+...+..... ...-+ ...+.++++.+...+ ..+..+.. ...+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~H-a~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~--~~~~ 401 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLH-AGDINQMVYRLESEPLKVPRSMLQFLDIALVQ--TMWV 401 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEE-CSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEE--EEEE
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccc-cCCHHHHHHHHHhcccccHHHHHhhccEEEEE--EEEE
Confidence 23444444332221110000 00000 001233334333211 01110000 1247
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE--EecCCcHHHHHHh
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC--TIHQPSIDIFEAF 1029 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~~~~~~~~ 1029 (1326)
|+|||||.+++. + | |+|||+.+...+++.|.++...|+|+++ ++|+.+ ++...+
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 999999887752 1 7 9999998887777777776666889885 899765 444444
No 244
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.96 E-value=1e-11 Score=147.78 Aligned_cols=139 Identities=18% Similarity=0.167 Sum_probs=90.9
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEE----
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYI---- 203 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv---- 203 (1326)
....+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++....+ .+.+++.
T Consensus 154 ~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~ 228 (418)
T 1p9r_A 154 HNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARG 228 (418)
T ss_dssp HHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHH
T ss_pred HHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHH
Confidence 345578888 4 4899999999999999999999999999886 8999999887642111 1233444
Q ss_pred -----ccCCCC--CCC----CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHH
Q 046656 204 -----SQHDVH--IGE----MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTD 272 (1326)
Q Consensus 204 -----~Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~ 272 (1326)
.|++.. +++ .|+++++.++..-+..-... . .+ ......+
T Consensus 229 lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tl------h---------~~---------------~~~~~i~ 278 (418)
T 1p9r_A 229 LRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTL------H---------TN---------------TAVGAVT 278 (418)
T ss_dssp HHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEE------C---------CS---------------SSHHHHH
T ss_pred HHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCccccc------c---------hh---------------hHHHHHH
Confidence 377554 344 58888887753211000000 0 00 0000112
Q ss_pred HHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhcCCccce
Q 046656 273 YYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALF 318 (1326)
Q Consensus 273 ~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~ill 318 (1326)
.|..+|++... ....|||||+|| ||++|+.+|++..
T Consensus 279 -rL~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 279 -RLRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp -HHHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred -HHHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 25566776432 234699999999 9999999999865
No 245
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.96 E-value=1.4e-09 Score=128.59 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCccc-------ccccccC----ccccCCChhhhHHH------HHHHHhhcC-CccceEecCCCCCCHHHH
Q 046656 270 LTDYYLKVLGLDVC-------ADTLVGD----EMVRGISGGQKKRL------TTGEMMVGP-ALALFMDEISNGLDSSTT 331 (1326)
Q Consensus 270 ~~~~~l~~lgL~~~-------~dt~vg~----~~~~~LSGGqkqRv------sia~al~~~-~~illLDEptsgLD~~t~ 331 (1326)
.++.+++.+++.+. .+..+.+ ..+..+|||||||+ ++|+++..+ |++++|||||+|||+..+
T Consensus 244 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 244 YLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 34556777777651 1122222 34568999999988 557889999 999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 332 FHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 332 ~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
..+.+.|+++. .+++ |++++|.. ++...+|++++|+
T Consensus 324 ~~l~~~l~~~~--~~~~-vi~~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVK--SIPQ-MIIITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHCC--SCSE-EEEEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHHhc--cCCe-EEEEEChH-HHHhhCCEEEEEE
Confidence 99999998853 2345 45566765 4788999999996
No 246
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.96 E-value=1.9e-11 Score=145.34 Aligned_cols=170 Identities=15% Similarity=0.125 Sum_probs=100.0
Q ss_pred ecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHH
Q 046656 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETL 219 (1326)
Q Consensus 140 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 219 (1326)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.+... ..+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~--p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLS--PNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSC--CEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceec--ceeeEEEecCc--ceEEEEecc
Confidence 379999999999999999999999999999999743 23444433322 24566666531 112222221
Q ss_pred Hh---hhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 220 AF---SARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 220 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
-+ .....+.+. ...+.. ..++.++..+++. ++....+
T Consensus 214 Gli~~a~~~~~L~~------~fl~~~--------------------------era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------EFLRHI--------------------------ARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------HHHHHH--------------------------TSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------HHHHHH--------------------------HHHHhhhEEeCCc--------cCCHHHH
Confidence 11 000000000 000000 0011122223332 2345579
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
|+||+||+.++++|...|.++++ +++|...+ ..++.+++.....+.+++.+..+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999776 55555555444334455554444445555555544
No 247
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.95 E-value=4.1e-10 Score=133.27 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=87.4
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhh--cCCCCC---CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTG---GYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLL 917 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L--~g~~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~ 917 (1326)
+-|++|++++|+||||||||||++.| .+..+. +...+.+++++..... . +.+.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~---------------------~-~rl~ 230 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR---------------------P-VRLV 230 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------H-HHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------H-HHHH
Confidence 56999999999999999999999954 454431 1224567777653210 0 0010
Q ss_pred -HHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH-HHHHHHHHHHHHh--hCCcEEEEeCCCCCCC
Q 046656 918 -YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLD 993 (1326)
Q Consensus 918 -f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg-Gqrqrl~ia~aL~--~~p~illLDEPtsgLD 993 (1326)
....+ .+.. +++++.+- +.. ..+. .+.+.+.-+.+++ .+|+++++||||+.+|
T Consensus 231 ~~a~~~----gl~~-------~~vleni~--------~~~----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 231 SIAQRF----GLDP-------DDALNNVA--------YAR----AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHT----TCCH-------HHHHHTEE--------EEE----CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHc----CCCh-------HhHhhcEE--------Eec----cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 00000 1111 11222111 110 1222 2344444444443 4699999999999999
Q ss_pred HHHH------------HHHHHHHHHHHhc-CCEEEEEecCCc------------------HHHHHHhceeeEEecC
Q 046656 994 ARAA------------AIVMRTVKNTVET-GRTVVCTIHQPS------------------IDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 994 ~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~~D~v~~l~~g 1038 (1326)
.... ..+++.|++++++ |+|||+|+|..+ ..+...+|.++.|.++
T Consensus 288 ~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 6533 5678888888754 999999999721 1234557888888764
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.92 E-value=5.9e-11 Score=136.09 Aligned_cols=122 Identities=12% Similarity=0.158 Sum_probs=80.9
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEE---cCccCCcc--ccc-ceEEEeecCCCCC-----CCCCHH
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI---SGYPKKQE--TFT-RISGYCEQNDIHS-----PLVTVY 913 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~Q~~~~~-----~~~Tv~ 913 (1326)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.... ... +.+||++|.+.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3468999999999999999999999 765 45899999 88765432 112 2479999998653 67899
Q ss_pred HHH--HHHH----HhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHH
Q 046656 914 ESL--LYSA----WLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTEQRKRLTIAVE 975 (1326)
Q Consensus 914 E~l--~f~~----~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqrl~ia~a 975 (1326)
|++ .|.. .++........+....++++++.++|.+ ..+.... .|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~-----~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK-----IIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH-----HTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhcc
Confidence 888 4541 0111111111222345889999999986 5666553 489988999999874
No 249
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=8.1e-10 Score=129.72 Aligned_cols=163 Identities=15% Similarity=0.020 Sum_probs=85.3
Q ss_pred EEEeccCCCChhhHHhhhcC-CCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCC
Q 046656 851 TALMGVSGAGKTTLMDVLAG-RKTGGYISGNITISGYPKKQE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEV 928 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g-~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~ 928 (1326)
+.|.||||+|||||+++|++ ... +..|.+.++|.+.... ...+.+++++|.+.+..... + ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D----------MGNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h----------cCCc
Confidence 89999999999999999999 443 2468898888654321 12345678887654311100 0 0000
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046656 929 DSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1008 (1326)
Q Consensus 929 ~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~ 1008 (1326)
... .+.+.++.+....-.+... .||| +..+|+++++|||++ ||..++..+.+++.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1333333332111011111 2565 788999999999999 99999999999998754
Q ss_pred hcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCCChhhHHHHHh
Q 046656 1009 ETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQ 1059 (1326)
Q Consensus 1009 ~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~~~~~~~~~f~ 1059 (1326)
.++++|+++|+++.-.-...+| ...+.+.++. .+++.++..
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~--~~~~~~~l~ 203 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPS--DSEISTILS 203 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCC--HHHHHHHHH
T ss_pred -CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcC--HHHHHHHHH
Confidence 4789999999986311122233 2556666654 245555555
No 250
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.89 E-value=2.4e-10 Score=131.01 Aligned_cols=123 Identities=12% Similarity=0.093 Sum_probs=77.7
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEE---CCccCCCCCcc---ceEEEEccCCCCC-----CCCCHH
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTY---NGHDMNEFVPQ---RTAAYISQHDVHI-----GEMTVR 216 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~~---~~~~yv~Q~d~~~-----~~lTV~ 216 (1326)
.+|++++|+||||||||||+|+|+ ..++. +|+|.+ +|.+.+..... +.+||++|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 468999999999999999999999 88887 899999 89876543211 2579999987543 68899
Q ss_pred HHH--HhhhhhccCCccchhhhHh-HHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcc-cccccccCcc
Q 046656 217 ETL--AFSARCQGVGSRYDMLTEL-ARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDV-CADTLVGDEM 292 (1326)
Q Consensus 217 E~l--~f~~~~~~~~~~~~~~~~~-~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~ 292 (1326)
|++ .|+. .. +. |+- . +-.+. .+....++++++.+||+. ..+ ..
T Consensus 238 e~l~~~f~~-~~----------~~~c~~-~--~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~-----~~ 284 (302)
T 2yv5_A 238 REVRNYFRE-FL----------RYQCKY-P--DCTHT--------------NEPGCAVKEAVKNGEISCERYK-----SY 284 (302)
T ss_dssp GGGGGGCGG-GH----------HHHHHS-T--TCCSS--------------SCTTCHHHHHHHTTSSCHHHHH-----HH
T ss_pred HHHHHHHHH-HH----------HccCCC-C--CCCCC--------------CCCCCHHHHHHHcCCCCHHHHH-----HH
Confidence 888 4531 00 00 000 0 00000 001123567788899975 444 34
Q ss_pred ccCCChhhhHHHHHHH
Q 046656 293 VRGISGGQKKRLTTGE 308 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~ 308 (1326)
++.|||.++|++.|||
T Consensus 285 ~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 285 LKIIKVYLEEIKELCR 300 (302)
T ss_dssp HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5579998899999886
No 251
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.88 E-value=4.2e-12 Score=151.17 Aligned_cols=136 Identities=15% Similarity=0.040 Sum_probs=90.7
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-------ccccceEEEee------
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-------ETFTRISGYCE------ 901 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~------ 901 (1326)
..+|+++ + .++|++++|+|||||||||||++|+|...+ .+|+|.+.|.++.. ....+.+|+.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 4478888 5 489999999999999999999999997653 37899998876532 11223345544
Q ss_pred ---cCCCCC--CC----CCHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHH
Q 046656 902 ---QNDIHS--PL----VTVYESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLT 971 (1326)
Q Consensus 902 ---Q~~~~~--~~----~Tv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ 971 (1326)
|++... .. .|+.+++.++..-... .........+ +.+.|..+++.+.. .. ..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~-----~~LSgg~~QR-- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--IS-----SSLLGVLAQR-- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HH-----HHEEEEEEEE--
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HH-----HHHHHHHHHH--
Confidence 776542 33 5889988775321100 0000000111 22356778887643 22 3599999999
Q ss_pred HHHHHhhCCcEEE
Q 046656 972 IAVELVANPSIIF 984 (1326)
Q Consensus 972 ia~aL~~~p~ill 984 (1326)
||++|+.+|++..
T Consensus 302 LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEECTTTCEEE
T ss_pred hhhhhcCCCCccC
Confidence 9999999999876
No 252
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.87 E-value=2.2e-11 Score=148.80 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=64.5
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRE 217 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 217 (1326)
.+++++++.+++|+.++|+|||||||||||++|+|.++|+ +|.|++.|.+--.......++++.|........|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 3567888899999999999999999999999999999987 8999999865222112345677777654334568888
Q ss_pred HHHhhhh
Q 046656 218 TLAFSAR 224 (1326)
Q Consensus 218 ~l~f~~~ 224 (1326)
.+.-+.+
T Consensus 325 ~l~~~LR 331 (511)
T 2oap_1 325 LLRAALR 331 (511)
T ss_dssp HHHTTGG
T ss_pred HHHHhhc
Confidence 8776555
No 253
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.86 E-value=1.4e-11 Score=139.47 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=95.7
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCC-CCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHD-VHIG 211 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~ 211 (1326)
...+++++++.+++| ++|.||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|+. ...|
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 345899999999999 999999999999999999999763 789999987643221 23466777753 3445
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
.+++.|++.+....++. ... + .+.... +.
T Consensus 105 ~i~~~Deid~~~~~r~~--------------~~~--------------------------~------~~~~~~-----~~ 133 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSD--------------RET--------------------------G------ASVRVV-----NQ 133 (274)
T ss_dssp EEEEEETCTTTCC-------------------------------------------------------CTTHH-----HH
T ss_pred CeEeeehhhhhhcccCC--------------Ccc--------------------------h------HHHHHH-----HH
Confidence 55666665542211000 000 0 000001 12
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCC------------CCCHHHHHHHHHHH
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISN------------GLDSSTTFHIVNSL 338 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEpts------------gLD~~t~~~i~~~l 338 (1326)
....|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 134 ~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 134 LLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 33469999999999999999999985 98864 23677777776644
No 254
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.85 E-value=6.2e-10 Score=117.53 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=35.5
Q ss_pred hcCCccceEecCCC-CCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhh
Q 046656 311 VGPALALFMDEISN-GLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPE 359 (1326)
Q Consensus 311 ~~~~~illLDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 359 (1326)
+.+|++|+||||++ ++|+.....+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34889999999986 9999999988888877543 355666655555433
No 255
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.81 E-value=1.1e-11 Score=145.75 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=113.6
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcc------------cCCCCceeeEEEECCccCCC----CCccceE---EEEccC
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQ------------LDSSLKVSGRVTYNGHDMNE----FVPQRTA---AYISQH 206 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~------------~~~~~~~~G~V~~~G~~~~~----~~~~~~~---~yv~Q~ 206 (1326)
.+++|..++|+|+||+|||||+++|+|. ..|+ .|.|.++|..+.. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 5678999999999999999999999993 2344 8999999843311 2233333 467777
Q ss_pred CCCCCCCCHHHHH--HhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 207 DVHIGEMTVRETL--AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 207 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
+-+....+..|.+ .|-+.++.. +.++..++..
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~--- 126 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF--- 126 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC---
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc---
Confidence 7777666665544 332221110 0001111111
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCC--ccceEecCCCCCCHHHHHHHHHHHHHH-HHhcCCEEEEEEecChhhHH
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPA--LALFMDEISNGLDSSTTFHIVNSLRQN-IHILNGTAVISLLQPAPETY 361 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~--~illLDEptsgLD~~t~~~i~~~l~~~-~~~~~~t~ii~i~q~~~~~~ 361 (1326)
++..+..+||+. +| +++++|||+.++|.......++.++.. .. ++++++ .|...++.
T Consensus 127 ----~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~--~g~ti~--sh~~~~~~ 186 (392)
T 1ni3_A 127 ----DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR--GANTLE--MKAKKEEQ 186 (392)
T ss_dssp ----CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--SSCSSS--HHHHHHHH
T ss_pred ----ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh--cCCccc--cccHHHHH
Confidence 123334467653 88 999999999999999999988888875 32 344443 78888999
Q ss_pred hhCCeEE-EecCC-eEEEEcChh
Q 046656 362 DLFDDII-LLSDG-QIVYQGPCE 382 (1326)
Q Consensus 362 ~~~D~vi-lL~~G-~iv~~G~~~ 382 (1326)
++||++. +|.+| ++++.|+.+
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHhccCCceeecCCCC
Confidence 9999999 99999 888777654
No 256
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.81 E-value=2.3e-12 Score=138.67 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=43.3
Q ss_pred HHH-HhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 306 TGE-MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 306 ia~-al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 455 7889999999999999999999999999888765421 1223 1 1 57899988875
No 257
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.79 E-value=2.9e-09 Score=126.01 Aligned_cols=62 Identities=6% Similarity=-0.016 Sum_probs=42.8
Q ss_pred cCCccceEecCCCCCCHHHH------------HHHHHHHHHHHHhcCCEEEEEEecCh-------------------hhH
Q 046656 312 GPALALFMDEISNGLDSSTT------------FHIVNSLRQNIHILNGTAVISLLQPA-------------------PET 360 (1326)
Q Consensus 312 ~~~~illLDEptsgLD~~t~------------~~i~~~l~~~~~~~~~t~ii~i~q~~-------------------~~~ 360 (1326)
.+|+++++|||++.+|+... .++++.|+++++..+.++ ++++|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitV-Ilv~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEE-EEEEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEE-EEEEeecccCCccccccCCCccCCchhHH
Confidence 47999999999999996533 567888888887655554 4456651 224
Q ss_pred HhhCCeEEEecCCe
Q 046656 361 YDLFDDIILLSDGQ 374 (1326)
Q Consensus 361 ~~~~D~vilL~~G~ 374 (1326)
.+.+|.++.|+.|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999997653
No 258
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.78 E-value=2.9e-11 Score=131.13 Aligned_cols=148 Identities=13% Similarity=0.059 Sum_probs=78.9
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCC-CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhh
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 923 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr 923 (1326)
.++|++++|+||||||||||+++|+|...+ |...|.|.+||....... .+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~--------------------~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL--------------------LEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH--------------------HGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH--------------------HHHhcccccCC
Confidence 578999999999999999999999997642 123566666665432211 11110000000
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH-HHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 046656 924 LRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 1002 (1326)
Q Consensus 924 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia-~aL~~~p~illLDEPtsgLD~~~~~~i~~ 1002 (1326)
.+...+.. ...+.+..+...+..+..... ...++|+||+||++++ ++++.++.++++|||.. .
T Consensus 79 ~~~~~~~~----~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~ 142 (208)
T 3c8u_A 79 APETFDFE----GFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R 142 (208)
T ss_dssp SGGGBCHH----HHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G
T ss_pred CCchhhHH----HHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H
Confidence 00011111 122223322111111111111 1235799999999987 77777777777787731 1
Q ss_pred HHHHHHhcCCEEEEEecCCcHHHHHHhce
Q 046656 1003 TVKNTVETGRTVVCTIHQPSIDIFEAFDE 1031 (1326)
Q Consensus 1003 ~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1031 (1326)
.+++. --.++++.+.....+.....|
T Consensus 143 ~l~~~---~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 143 DLTAI---WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGGT---CSEEEEECCCHHHHHHHHHHH
T ss_pred HHHHh---cCEEEEEeCCHHHHHHHHHHH
Confidence 12222 236777877755444455555
No 259
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.78 E-value=8.4e-12 Score=146.91 Aligned_cols=170 Identities=10% Similarity=0.080 Sum_probs=112.8
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCC----------CCCeeEEEEEEcCccCCc----ccccceE---EEeecCCCC
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYISGNITISGYPKKQ----ETFTRIS---GYCEQNDIH 906 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~~---gyv~Q~~~~ 906 (1326)
.+++|+.++|+|+||||||||+|+|+|.. +..+..|.+.++|..... ...++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 46789999999999999999999999932 113568999998843210 0011222 466677766
Q ss_pred CCCCCHHHHH--HHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC--cE
Q 046656 907 SPLVTVYESL--LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANP--SI 982 (1326)
Q Consensus 907 ~~~~Tv~E~l--~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p--~i 982 (1326)
.+..+..|.+ .|.+.++.. +.++..++..+ +..+ ..++++ .+| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~~i-----~~v~~~------------~dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DAEI-----IHVEGD------------VDPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TTCS-----SCCSSS------------SCHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--ccee-----eeeccc------------cCcchhh
Confidence 6666665554 343333210 11111111111 1111 124443 289 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEecCCcHHHHHHhceee-EEecCc-EEEEEcCCC
Q 046656 983 IFMDEPTSGLDARAAAIVMRTVKNT-VETGRTVVCTIHQPSIDIFEAFDELF-LMKRGG-QEIYVGPLG 1048 (1326)
Q Consensus 983 llLDEPtsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~D~v~-~l~~gg-~~~~~G~~~ 1048 (1326)
+++|||+.++|+......++.+++. .+.|.||+ +|... ++.+.||++. +|.+ | +.++.|+..
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCC
Confidence 9999999999999999999999988 66677864 99865 6788899999 8875 6 777777663
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.77 E-value=1.6e-10 Score=125.19 Aligned_cols=30 Identities=37% Similarity=0.471 Sum_probs=28.2
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 261
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.72 E-value=3.6e-10 Score=130.05 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=59.5
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccC--CCCceeeEEEE---CCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhh
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLD--SSLKVSGRVTY---NGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFS 222 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 222 (1326)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|..... ..++.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8899999999999999999999999987 76 899999 8876432 123456788 777777889999999886
Q ss_pred hhh
Q 046656 223 ARC 225 (1326)
Q Consensus 223 ~~~ 225 (1326)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 262
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.71 E-value=1.6e-08 Score=103.18 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=29.4
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45666 8999999999999999999999998864
No 263
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.71 E-value=1.3e-10 Score=133.77 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=73.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEE-------------------eCCeEEEEeccCCCChhhHHhhhcC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i-------------------~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
++++||++.+. ++++++++.+ ++|+++||+|+||||||||+++|+|
T Consensus 38 i~~~~v~~~y~---------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 38 LSLEEVAEIYL---------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCHHHHHHTHH---------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred cchHhHHHHHH---------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 56677765542 3778888877 8999999999999999999999999
Q ss_pred CCCCCeeEEEEEE---cCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhh
Q 046656 871 RKTGGYISGNITI---SGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 923 (1326)
Q Consensus 871 ~~~~~~~~G~i~i---~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr 923 (1326)
.....+.+|+|.+ ||...... .++.+|++ |...+.+.+|+.+++.+...++
T Consensus 103 ~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 103 LLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 6541123789999 88775432 23456888 7777778889999988765543
No 264
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.69 E-value=1.2e-09 Score=124.57 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=66.4
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEE---cCccCCcc-cccce-EEEeecCCCCCC----CCCHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI---SGYPKKQE-TFTRI-SGYCEQNDIHSP----LVTVY 913 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~Q~~~~~~----~~Tv~ 913 (1326)
+.+.+|++++|+|+||+|||||+|+|+|... +.+|+|.+ +|...... ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 4567899999999999999999999999866 45899998 77654321 12222 699999987655 6789
Q ss_pred HHHH--HHHH------hhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 914 ESLL--YSAW------LRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 914 E~l~--f~~~------lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
|++. |... ++........+....++++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 3311 111111111122345889999999976443222 136777766
No 265
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.68 E-value=2.4e-09 Score=122.75 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=51.1
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEE---CCccCCCCCc---cceEEEEccCCC-----------
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTY---NGHDMNEFVP---QRTAAYISQHDV----------- 208 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~---~~~~~yv~Q~d~----------- 208 (1326)
.+.+|++++|+|||||||||||++|+|...|. +|+|.+ +|.+++.... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999987 999999 8987754321 135799999864
Q ss_pred -----CCCCCCHHHHHHhh
Q 046656 209 -----HIGEMTVRETLAFS 222 (1326)
Q Consensus 209 -----~~~~lTV~E~l~f~ 222 (1326)
++|++|+ ||+.|+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5888899 888875
No 266
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.67 E-value=1.8e-10 Score=134.30 Aligned_cols=156 Identities=21% Similarity=0.230 Sum_probs=95.0
Q ss_pred cceeecceeEEEeCc-------eEEEEecCCCCChhHHHHHHhcccCCCC-ceeeEEEECCccCCCC---CccceEEEEc
Q 046656 136 HLTILKDVSGIIKPG-------RMTLLLGPPSSGKTTLLLALAGQLDSSL-KVSGRVTYNGHDMNEF---VPQRTAAYIS 204 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G-------~~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~---~~~~~~~yv~ 204 (1326)
...++++++..+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..+|.++... ..++.+.|+.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 345777888888776 8899999999999999999999984221 1366666655443211 1235689999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|.+.+.+ ++.|++.......+. +.. .... .....++..+..++|.. +
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~----~i~--~~~~------------------------~~~~~i~~~l~~~~li~-a 156 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQI----DIM--IGKG------------------------PSAKSIRIDIQPFTLVG-A 156 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-E
T ss_pred chhhcCH--HHHHHHHHHHHhccc----cee--eccC------------------------cccccccccCCCeEEEE-e
Confidence 9876554 788888543221110 000 0000 00011222233344433 4
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHIL 345 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~ 345 (1326)
++. +..||+|+|||+.++ .+||+.+..++.+.|++.+...
T Consensus 157 t~~-----~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~ 196 (334)
T 1in4_A 157 TTR-----SGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLM 196 (334)
T ss_dssp ESC-----GGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT
T ss_pred cCC-----cccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc
Confidence 433 346999999998544 7888888889999998876543
No 267
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=1.9e-08 Score=117.93 Aligned_cols=135 Identities=14% Similarity=0.118 Sum_probs=67.7
Q ss_pred EEEecCCCCChhHHHHHHhc-ccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHHHHHhhhhhccCCc
Q 046656 153 TLLLGPPSSGKTTLLLALAG-QLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 230 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G-~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 230 (1326)
++|.||||+|||||+++|+| ...+. .|++.++|.+...... ...++|++|.+.+..+.+ ..+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS----------DMGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh----------hcCCcc
Confidence 89999999999999999999 56665 7999999876543221 346778888654211100 000000
Q ss_pred cchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHh
Q 046656 231 RYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMM 310 (1326)
Q Consensus 231 ~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al 310 (1326)
+ . ......+.+.+..++.. .. .+|| +
T Consensus 106 ~-----~----------------------------~~~~~i~~~~~~~~~~~---------~~-~ls~-----------l 131 (354)
T 1sxj_E 106 R-----I----------------------------VIQELLKEVAQMEQVDF---------QD-SKDG-----------L 131 (354)
T ss_dssp H-----H----------------------------HHHHHHHHHTTTTC-------------------------------
T ss_pred h-----H----------------------------HHHHHHHHHHHhccccc---------cc-cccc-----------c
Confidence 0 0 00000111111111110 01 3566 7
Q ss_pred hcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChh
Q 046656 311 VGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAP 358 (1326)
Q Consensus 311 ~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 358 (1326)
.++|+++++|||++ ||..+...+.+.+.+.. .++++|.++|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCEEEEEeCCHH
Confidence 78999999999999 99999999999888742 3566666666543
No 268
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.65 E-value=1e-11 Score=133.49 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=41.9
Q ss_pred HHH-HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 972 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 972 ia~-aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..+. +..+|.+ ..+|++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 677888888889999999999999999998876543 2345621 4589988775
No 269
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.64 E-value=2.9e-09 Score=117.98 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=43.6
Q ss_pred hCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHH-------HHHHhceeeEEec
Q 046656 978 ANPSIIFMDEPTSGL--DARAAAIVMRTVKNTV-ETGRTVVCTIHQPSID-------IFEAFDELFLMKR 1037 (1326)
Q Consensus 978 ~~p~illLDEPtsgL--D~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~-------~~~~~D~v~~l~~ 1037 (1326)
.+|+++++|+|++.+ |+.....++..+.+++ +.|+|||+++|..... +.+.+|.++.|.+
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 5544445555555554 5699999999986521 4567899999975
No 270
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.64 E-value=1.5e-08 Score=123.12 Aligned_cols=179 Identities=13% Similarity=0.133 Sum_probs=107.5
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEE-EEEEcCccCCccccc-ceEEEeecCCCCCCCCCHH
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISG-NITISGYPKKQETFT-RISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~-~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
..|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+.+...+..... |..+.... ...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-
Confidence 368888888999999999999999999999999874321 112 233322221111100 00000000 000
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCC
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSG 991 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPtsg 991 (1326)
+ .++. ..+...+ ..++.+.++.++..++.-.. ..++|.+|.+ ..++.++ .+|+++++|+++.-
T Consensus 261 ~------~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 Q------NLRT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp H------HHHT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred H------HHhc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 0 0111 1223222 23455566665544332111 1258999987 5667776 67999999999987
Q ss_pred CCH--------HHHHHHHHHHHHHHhc-CCEEEEEec---------C--CcH-------HHHHHhceeeEEecCc
Q 046656 992 LDA--------RAAAIVMRTVKNTVET-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 992 LD~--------~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~D~v~~l~~gg 1039 (1326)
.+. .....+.+.|++++++ |++||+++| + |.. .+...+|.|++|.++.
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 742 3346677888888754 999999999 2 431 3566799999998753
No 271
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.62 E-value=1.3e-09 Score=124.93 Aligned_cols=101 Identities=15% Similarity=0.228 Sum_probs=64.7
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEE---cCccCCccc--c-cceEEEeecCCC-------------
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI---SGYPKKQET--F-TRISGYCEQNDI------------- 905 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~gyv~Q~~~------------- 905 (1326)
+.+|++++|+||||||||||+++|+|... +.+|+|.+ +|.+..... . .+.+||++|.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 45689999999999999999999999876 45899999 887654211 1 135799999874
Q ss_pred ---CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccc
Q 046656 906 ---HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLV 954 (1326)
Q Consensus 906 ---~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v 954 (1326)
++|.+|+ ||+.|.. .+. ..+....++++|+.++|. +..+...
T Consensus 244 ~~~l~~~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4788888 8888752 111 112234588999999995 5555543
No 272
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.61 E-value=2.7e-10 Score=132.83 Aligned_cols=150 Identities=17% Similarity=0.082 Sum_probs=92.6
Q ss_pred eEeeecceeEEeCC-------eEEEEeccCCCChhhHHhhhcCCCCC--CeeEEEEEEcCccCCc---ccccceEEEeec
Q 046656 835 LVLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYISGNITISGYPKKQ---ETFTRISGYCEQ 902 (1326)
Q Consensus 835 ~~vL~~vs~~i~~G-------e~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q 902 (1326)
..+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.+... ...++.++++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34788888888876 88999999999999999999996521 1345665555443211 111346889998
Q ss_pred CCCCCCCCCHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 046656 903 NDIHSPLVTVYESLLYSAWLRLRTEV--DSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANP 980 (1326)
Q Consensus 903 ~~~~~~~~Tv~E~l~f~~~lr~~~~~--~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p 980 (1326)
.+.+.+ ++.|++....... ..+. ......+.+++.++.+++.. +++.. ..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE-------
T ss_pred hhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce-------
Confidence 776655 7888875432211 1000 01111223444444455543 33333 35999999998655
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 046656 981 SIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009 (1326)
Q Consensus 981 ~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1009 (1326)
.+||+.+...+.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 78888888899999988764
No 273
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.61 E-value=7e-09 Score=118.16 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=44.2
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEE---CCccCCCCCcc-ce-EEEEccCCCCCC----CCCH
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTY---NGHDMNEFVPQ-RT-AAYISQHDVHIG----EMTV 215 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~~-~~-~~yv~Q~d~~~~----~lTV 215 (1326)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+..... +. .+|+.|++.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 446689999999999999999999999999876 899998 88766533211 22 699999986654 6899
Q ss_pred HHHHH
Q 046656 216 RETLA 220 (1326)
Q Consensus 216 ~E~l~ 220 (1326)
|++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8884
No 274
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.59 E-value=3.2e-11 Score=136.37 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=86.9
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCC-CCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---TFTRISGYCEQND-IHSPLV 910 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~-~~~~~~ 910 (1326)
..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.+.... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45899999999999 99999999999999999999764 26899999765322 1234567777764 445566
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 046656 911 TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990 (1326)
Q Consensus 911 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts 990 (1326)
++.|++.+.+..+. .. ... .+....+... ..|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~-----~~----~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRS-----DR----ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccC-----CC----cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 66666643221110 00 000 1222233333 248999999999999999999975 88864
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.54 E-value=2.4e-08 Score=114.05 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=75.0
Q ss_pred ceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHH
Q 046656 841 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSA 920 (1326)
Q Consensus 841 vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~ 920 (1326)
+++..++|++++|+|+|||||||++..|++... ...|+|.+.+.+.... + ..|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~------~-------------a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA------A-------------AIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH------H-------------HHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH------H-------------HHHH-----
Confidence 455567899999999999999999999999654 2245676655432100 0 0111
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH---HHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 046656 921 WLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 997 (1326)
Q Consensus 921 ~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl---~ia~aL~~~p~illLDEPtsgLD~~~~ 997 (1326)
.....+.+++..+ ...|+|+.+++ +|++++..+|+++|+|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 2233444555321 13688999999 89999999999999999974 2334
Q ss_pred HHHHHHHHHH
Q 046656 998 AIVMRTVKNT 1007 (1326)
Q Consensus 998 ~~i~~~l~~~ 1007 (1326)
..+++.++++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 276
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.52 E-value=1.4e-07 Score=107.42 Aligned_cols=127 Identities=18% Similarity=0.092 Sum_probs=84.4
Q ss_pred ecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHH
Q 046656 839 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLY 918 (1326)
Q Consensus 839 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f 918 (1326)
+++++. +|++++++|+||+||||+...|++... ...|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh------------------HH-HHH--
Confidence 678887 999999999999999999999999654 23567777665432100 00 000
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC-CCCCCHHHH
Q 046656 919 SAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 997 (1326)
Q Consensus 919 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP-tsgLD~~~~ 997 (1326)
..+.+..++.-+.. + .+-...+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01223344432211 0 12345566788999988899999999999 999998888
Q ss_pred HHHHHHHHHHHhcCCEEEEE
Q 046656 998 AIVMRTVKNTVETGRTVVCT 1017 (1326)
Q Consensus 998 ~~i~~~l~~~~~~g~tvi~~ 1017 (1326)
..+.+..+... ...+++++
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~ 218 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVL 218 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEE
Confidence 77777766543 23344433
No 277
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.51 E-value=2.3e-08 Score=120.26 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=49.2
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE 193 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 193 (1326)
..+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 4579999999999 999999999999999999999999988 8999999987754
No 278
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.49 E-value=1.6e-10 Score=127.38 Aligned_cols=38 Identities=32% Similarity=0.253 Sum_probs=22.9
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhc-CCCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 873 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g~~~ 873 (1326)
+..+++|+++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4678999999999999999999999999999999 9754
No 279
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.49 E-value=1e-07 Score=108.85 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=77.8
Q ss_pred eeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhh
Q 046656 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFS 222 (1326)
Q Consensus 143 vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 222 (1326)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. |. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 45556899999999999999999999999998765 677776553311 00 000111
Q ss_pred hhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhH
Q 046656 223 ARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKK 302 (1326)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkq 302 (1326)
..+++.+|++. ....|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE----------ECCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE----------EecCCccCHH
Confidence 11233445542 2246899999
Q ss_pred HH---HHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHH
Q 046656 303 RL---TTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNI 342 (1326)
Q Consensus 303 Rv---sia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~ 342 (1326)
++ ++++++..+++++++|+|.. ......+++.|+++.
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 99 89999999999999999974 344556666666543
No 280
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.47 E-value=2.6e-07 Score=107.75 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhC--CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhcCCEEEEEecCCcH-----
Q 046656 968 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVKNT----VETGRTVVCTIHQPSI----- 1023 (1326)
Q Consensus 968 qrl~ia~aL~~~--p~illLDEPtsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1023 (1326)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|+|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 1222344444444 3559999999996431
Q ss_pred ----------HHHHHhceeeEEecCcEEEEEcC
Q 046656 1024 ----------DIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 1024 ----------~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 14456788888876 34444443
No 281
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.46 E-value=2e-07 Score=106.25 Aligned_cols=142 Identities=15% Similarity=0.166 Sum_probs=86.2
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQG 227 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 227 (1326)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 479999999999999999999999998653 35 24566666532 3455555543221
Q ss_pred CCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHH
Q 046656 228 VGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTG 307 (1326)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia 307 (1326)
..|++... ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~~----------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLEV----------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCCB----------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeEe----------cCC-HHHHHHHHH
Confidence 11222100 012 233355565
Q ss_pred HHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEE-EecChhhHHhhCCeEEEecCCeEEEE
Q 046656 308 EMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHI--LNGTAVIS-LLQPAPETYDLFDDIILLSDGQIVYQ 378 (1326)
Q Consensus 308 ~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~--~~~t~ii~-i~q~~~~~~~~~D~vilL~~G~iv~~ 378 (1326)
+ +.+++++|+| |+|+|+.....+.+ +.+.... ...++++. .+|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDE-LKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 99999876544433 3333210 11223332 36666777777887766677777753
No 282
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.45 E-value=5.3e-07 Score=99.62 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=42.6
Q ss_pred cCCccceEecCCCCC--CHHHHHHHHHHHHHHHHhcCCEEEEEEecChhh--------HHhhCCeEEEecC
Q 046656 312 GPALALFMDEISNGL--DSSTTFHIVNSLRQNIHILNGTAVISLLQPAPE--------TYDLFDDIILLSD 372 (1326)
Q Consensus 312 ~~~~illLDEptsgL--D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~--------~~~~~D~vilL~~ 372 (1326)
.+|+++++|+|++.+ |.....+++..+.+.++..+ .+++.++|...+ +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~-~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTG-CTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTT-CEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCC-CeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 478999999999988 66556677777777766554 445556665544 4678899999964
No 283
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.45 E-value=6.6e-10 Score=126.06 Aligned_cols=77 Identities=25% Similarity=0.355 Sum_probs=55.7
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCC-CCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHD-VHIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 212 (1326)
..+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++..... .+.+++++|+. ...+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 45799999999999 99999999999999999999875 6889998866432111 12345556552 23455
Q ss_pred CCHHHHHH
Q 046656 213 MTVRETLA 220 (1326)
Q Consensus 213 lTV~E~l~ 220 (1326)
+++.|++.
T Consensus 135 i~~iDeid 142 (278)
T 1iy2_A 135 IVFIDEID 142 (278)
T ss_dssp EEEEETHH
T ss_pred EEehhhhH
Confidence 56666663
No 284
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.44 E-value=1.4e-08 Score=127.80 Aligned_cols=161 Identities=18% Similarity=0.232 Sum_probs=99.9
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCC-------
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHD------- 207 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d------- 207 (1326)
+...++++++..+++|+.++|+||||+|||||+++|+|.+++. ..|.+.+++.+.+... ..++|++|..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~ 120 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEK 120 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHH
Confidence 3455789999999999999999999999999999999999875 2488999887766543 3588887742
Q ss_pred ---------------CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHH
Q 046656 208 ---------------VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTD 272 (1326)
Q Consensus 208 ---------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~ 272 (1326)
+.+..+++.+|+.... +... +.+.+.. .. .
T Consensus 121 ~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~~~--------------------~~~~v~~-------~~-------~ 165 (604)
T 3k1j_A 121 YREKAKSQESVKSSNMRLKSTVLVPKLLVDN-CGRT--------------------KAPFIDA-------TG-------A 165 (604)
T ss_dssp HHHHHHHHTCC-----------CCCEEEECC-TTCS--------------------SCCEEEC-------TT-------C
T ss_pred HHHhhccchhhhhhcccccccccccceeecc-ccCC--------------------CCCEEEc-------CC-------C
Confidence 1112222222221100 0000 0000000 00 0
Q ss_pred HHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHH
Q 046656 273 YYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQ 340 (1326)
Q Consensus 273 ~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~ 340 (1326)
...+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 166 ~~~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 166 HAGALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CHHhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 0112222211111 1124699999999999999999999999999988 898887777777654
No 285
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.43 E-value=9.9e-10 Score=122.78 Aligned_cols=76 Identities=25% Similarity=0.361 Sum_probs=54.1
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCC-CCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHD-VHIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 212 (1326)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++..... .+.+++++|+. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 45799999999999 99999999999999999999875 6889988865432111 12344555542 23444
Q ss_pred CCHHHHH
Q 046656 213 MTVRETL 219 (1326)
Q Consensus 213 lTV~E~l 219 (1326)
+++.|++
T Consensus 111 i~~~Dei 117 (254)
T 1ixz_A 111 IVFIDEI 117 (254)
T ss_dssp EEEEETH
T ss_pred EEEehhh
Confidence 5555555
No 286
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.42 E-value=4e-07 Score=103.70 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=82.5
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhcc
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR 925 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~ 925 (1326)
++|++++++|+||+||||++..|++.... ..| +.+.++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47899999999999999999999986531 123 12455555442 234455543321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 046656 926 TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005 (1326)
Q Consensus 926 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~ 1005 (1326)
+..++... . ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----~------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----V------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----B------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----e------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11222110 0 1232 23344555 45999999999 99999876655554433
Q ss_pred HHH---hcCCEEEE-EecCCcHHHHHHhceeeEEecCcEEE
Q 046656 1006 NTV---ETGRTVVC-TIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 1006 ~~~---~~g~tvi~-~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
-+. ..+.++++ ++|... ++.+.+|++-.+..+|.++
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEE
Confidence 322 12333444 378754 6777788777776654443
No 287
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.41 E-value=3.6e-08 Score=104.96 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~ 1007 (1326)
+...+|++++.+|+++++| ||++|..+...+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999888753
No 288
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.34 E-value=2.6e-08 Score=107.06 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=48.6
Q ss_pred eEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---ccceEEEEccCCCCCCCCCHHHHHH
Q 046656 144 SGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---PQRTAAYISQHDVHIGEMTVRETLA 220 (1326)
Q Consensus 144 s~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 220 (1326)
|+.+++|++++|+||||||||||+++|+|.++ .+.++|....... .++.++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56678999999999999999999999999863 2445554433221 1345789999877666666666554
Q ss_pred h
Q 046656 221 F 221 (1326)
Q Consensus 221 f 221 (1326)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
No 289
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.32 E-value=4.9e-08 Score=117.45 Aligned_cols=51 Identities=20% Similarity=0.112 Sum_probs=46.4
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
.+|+|+|++|++ ++++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 479999999999 9999999999999999999999876 45899999998764
No 290
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.31 E-value=1.1e-08 Score=124.03 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=91.9
Q ss_pred ceeEEeCCeEEEEeccCCCChhhHHhhhcC--CCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC-CC-CCHHHHH
Q 046656 841 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHS-PL-VTVYESL 916 (1326)
Q Consensus 841 vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~-~~-~Tv~E~l 916 (1326)
+++.+.++..+.|.|.|||||||+++.|.. .... ..|++.+.+.+.+...+.. | ..-+.+. +- ..+.+..
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~a~ 233 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKDAA 233 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhhh---h-ccCCcccceeecCHHHHH
Confidence 567778899999999999999999999875 2221 1244555444433222211 0 0001111 00 1122222
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHcCCccccccc--ccCCCCCCCCHHHHHHH----------HHHHHHhhCCc-EE
Q 046656 917 LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL--VGLPGESGLSTEQRKRL----------TIAVELVANPS-II 983 (1326)
Q Consensus 917 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~--vg~~~~~~LSgGqrqrl----------~ia~aL~~~p~-il 983 (1326)
..-.++ ..+.+++ .++++..|+.++.+.. +. ..+|+||+|+. ++++++...|. ++
T Consensus 234 ~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 234 NALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 111111 1222333 3678888887654321 11 13677776642 35566677898 78
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh----cCCEEEEEecCCc
Q 046656 984 FMDEPTSGLDARAAAIVMRTVKNTVE----TGRTVVCTIHQPS 1022 (1326)
Q Consensus 984 lLDEPtsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~ 1022 (1326)
++||++.-+|.. ...+.+.+.++++ .|.++|++||+|+
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999988843 3445555555543 2779999999997
No 291
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.28 E-value=3e-07 Score=111.60 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=105.7
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
...|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~~ 245 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSAQ 245 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCHH
Confidence 45789999899999999999999999999999999876431 22 124454432 3333
Q ss_pred HHHHhh-hhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 217 ETLAFS-ARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 217 E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
+...-. +...+... .++ . .+...+.+ . ..+...++.++.... .+-+ ..+
T Consensus 246 ~l~~r~~~~~~~~~~-----~~l----~-~g~l~~~~--------------~-~~~~~a~~~l~~~~l---~i~d--~~~ 295 (454)
T 2r6a_A 246 QLVMRMLCAEGNINA-----QNL----R-TGKLTPED--------------W-GKLTMAMGSLSNAGI---YIDD--TPS 295 (454)
T ss_dssp HHHHHHHHHHHTCCH-----HHH----H-TSCCCHHH--------------H-HHHHHHHHHHHSSCE---EEEC--CTT
T ss_pred HHHHHHHHHHcCCCH-----HHH----h-cCCCCHHH--------------H-HHHHHHHHHHhcCCE---EEEC--CCC
Confidence 222110 00001100 000 0 00000000 0 011222333332221 1111 236
Q ss_pred CChhhhHHHHHHHHhh--cCCccceEecCCCCCCH--------HHHHHHHHHHHHHHHhcCCEEEEEEec----------
Q 046656 296 ISGGQKKRLTTGEMMV--GPALALFMDEISNGLDS--------STTFHIVNSLRQNIHILNGTAVISLLQ---------- 355 (1326)
Q Consensus 296 LSGGqkqRvsia~al~--~~~~illLDEptsgLD~--------~t~~~i~~~l~~~~~~~~~t~ii~i~q---------- 355 (1326)
+|++|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+.+++..+.+ |+.++|
T Consensus 296 ~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~-vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 296 IRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVP-VIALSQLSRSVEQRQD 372 (454)
T ss_dssp CCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCC-EEEEECCCTTSTTC--
T ss_pred CCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCe-EEEEecCCcccccCCC
Confidence 8999987 4556665 68999999999998743 23367788888888766544 555666
Q ss_pred --Ch-------hhHHhhCCeEEEecCCeE
Q 046656 356 --PA-------PETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 356 --~~-------~~~~~~~D~vilL~~G~i 375 (1326)
|. ..+...+|.|++|..++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987654
No 292
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.27 E-value=1.4e-07 Score=100.31 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=36.5
Q ss_pred CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHH
Q 046656 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQN 341 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~ 341 (1326)
|..-..+++.+|++++.+|+++++| ||++|.....++++.+.+.
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4333345678999999999999999 9999999999999988753
No 293
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.27 E-value=9.6e-08 Score=115.72 Aligned_cols=167 Identities=11% Similarity=0.031 Sum_probs=88.9
Q ss_pred eeEEEeCceEEEEecCCCCChhHHHHHHhc-c-cCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCC--CHHHH
Q 046656 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAG-Q-LDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEM--TVRET 218 (1326)
Q Consensus 143 vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G-~-~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E~ 218 (1326)
+++.+..+..++|.|++||||||+|++|.. . ...+ .|+|.+.+.+..... .+.-..+|++ +|.++
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~e--------l~~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLE--------LSVYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSG--------GGGGTTCTTBSSSCBCS
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhh--------hhhhccCCcccceeecC
Confidence 677888899999999999999999999876 2 2322 466665554432110 0100112221 22222
Q ss_pred HHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCCh
Q 046656 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISG 298 (1326)
Q Consensus 219 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 298 (1326)
...+.+... ....+ .+.+ ...++..|+.+..+.. ......+||
T Consensus 229 ~~~a~~~L~-----~~~~E-----------------------------merR-~~ll~~~Gv~~i~~yn--~~~~~~~s~ 271 (512)
T 2ius_A 229 MKDAANALR-----WCVNE-----------------------------MERR-YKLMSALGVRNLAGYN--EKIAEADRM 271 (512)
T ss_dssp HHHHHHHHH-----HHHHH-----------------------------HHHH-HHHHHHTTCSSHHHHH--HHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHH-----------------------------HHHH-HHHHHHcCCccHHHHH--HHHHHHhhc
Confidence 221111000 00011 1111 2346667766543210 001124799
Q ss_pred hhhHHH----------HHHHHhhcCCc-cceEecCCCCCCHHHHHHHHHHHHHHHHhcC--CEEEEEEecChh
Q 046656 299 GQKKRL----------TTGEMMVGPAL-ALFMDEISNGLDSSTTFHIVNSLRQNIHILN--GTAVISLLQPAP 358 (1326)
Q Consensus 299 GqkqRv----------sia~al~~~~~-illLDEptsgLD~~t~~~i~~~l~~~~~~~~--~t~ii~i~q~~~ 358 (1326)
||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++++..+ |..++..+|...
T Consensus 272 G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 272 MRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp TCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred CCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 998863 24555667787 89999999988843 3445555555544322 455555666544
No 294
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.27 E-value=1.8e-06 Score=98.34 Aligned_cols=117 Identities=19% Similarity=0.105 Sum_probs=79.0
Q ss_pred cceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHH
Q 046656 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLA 220 (1326)
Q Consensus 141 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 220 (1326)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+... . + ++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~-----~-~------------~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR-----P-A------------AR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC-----H-H------------HH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc-----H-h------------HH-HHHH
Confidence 678887 99999999999999999999999998765 6888877654311 0 0 00 0000
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
.+.+..|++.... +. +-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~~----~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---MD----GESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---CT----TCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---CC----CCCHHH
Confidence 0112234432210 00 122334
Q ss_pred hHHHHHHHHhhcCCccceEecC-CCCCCHHHHHHHHHHHHH
Q 046656 301 KKRLTTGEMMVGPALALFMDEI-SNGLDSSTTFHIVNSLRQ 340 (1326)
Q Consensus 301 kqRvsia~al~~~~~illLDEp-tsgLD~~t~~~i~~~l~~ 340 (1326)
.+|.+++++...+++++++||| +.++|......+.+..+.
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 5688999988889999999999 999998877777766554
No 295
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.26 E-value=1.8e-08 Score=126.80 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=98.3
Q ss_pred ceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 046656 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 834 ~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
...+++++++.+++|+.+.|+||||+|||||+++|++..... ..|.+.+++.+... ....++|+++.... .+.
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~----~~~ 118 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGR----RIV 118 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHH----HHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHH----HHH
Confidence 345889999999999999999999999999999999976532 34888888876543 23457888764210 011
Q ss_pred HHHHHHHHhhccCCCCHHHHHHH-------------------------HHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMF-------------------------IEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~-------------------------v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
|...-.+.... ... ..+... ....-+.+|..+..... ..++|+|++|
T Consensus 119 e~~~~~~~~~~--~~r-~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~-----~g~~~~g~~~ 190 (604)
T 3k1j_A 119 EKYREKAKSQE--SVK-SSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ-----SGGLGTPAHE 190 (604)
T ss_dssp HHHHHHHHHHT--CC------------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---------CCCCGGG
T ss_pred HHHHHhhccch--hhh-hhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh-----cCCccccccc
Confidence 11111110000 000 000000 00011112211111111 1358999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 1006 (1326)
++..++....++.+|||||... |++.....+.+.|.+
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999999988 899888888888774
No 296
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.26 E-value=1.1e-09 Score=124.20 Aligned_cols=124 Identities=16% Similarity=0.183 Sum_probs=80.3
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---TFTRISGYCEQNDI-HSPLV 910 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~-~~~~~ 910 (1326)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+.... ...+.+++++|... ..+.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 35789999999999 89999999999999999998654 57888887653211 11234566777643 45667
Q ss_pred CHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 046656 911 TVYESLLYSAWLRLRT-EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSI 982 (1326)
Q Consensus 911 Tv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~i 982 (1326)
++.|++...+..+... .....+..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh
Confidence 7777774322111100 0011112222333221 3789999999999999998875
No 297
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.25 E-value=5e-08 Score=104.85 Aligned_cols=61 Identities=25% Similarity=0.190 Sum_probs=40.4
Q ss_pred eeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCCCCC
Q 046656 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---TFTRISGYCEQNDIHSP 908 (1326)
Q Consensus 842 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~~~~ 908 (1326)
|+++++|++++|+||||||||||+++|+|..+ .+.+++...... ..++.++|++|+...++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQ 64 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHH
Confidence 46678999999999999999999999999753 345555433211 12345688888654433
No 298
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.23 E-value=8e-07 Score=103.22 Aligned_cols=41 Identities=32% Similarity=0.410 Sum_probs=33.3
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEE-EECC
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRV-TYNG 188 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V-~~~G 188 (1326)
+-+++|+++.|.||||||||||+..+++...+. .|.| .+++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~ 97 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDA 97 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 468999999999999999999999999987543 4554 4444
No 299
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.22 E-value=1.5e-09 Score=121.18 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=81.4
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---TFTRISGYCEQNDI-HSPLV 910 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~-~~~~~ 910 (1326)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|... ..+.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 35789999999999 89999999999999999998654 57788887653211 11233566677642 45667
Q ss_pred CHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 046656 911 TVYESLLYSAWLRLRT-EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 988 (1326)
Q Consensus 911 Tv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 988 (1326)
++.|++...+..+... .....+..+.+.+++. .|||||+||+.|++++..+|++ +|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 7777774322111100 0011122222333322 3788999999999999999886 4543
No 300
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.21 E-value=1e-06 Score=102.74 Aligned_cols=31 Identities=39% Similarity=0.562 Sum_probs=27.5
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+-+++|+++.|.||||||||||+..++....
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999988887653
No 301
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.15 E-value=3.6e-07 Score=97.73 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=31.9
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046656 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1008 (1326)
Q Consensus 970 l~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~ 1008 (1326)
...|++++.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 34589999999999999 99999999998888887653
No 302
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.11 E-value=7e-07 Score=98.03 Aligned_cols=40 Identities=25% Similarity=0.210 Sum_probs=23.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHh-cccCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALA-GQLDS 176 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~-G~~~~ 176 (1326)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35689999999999999999999999999999999 98753
No 303
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.07 E-value=1.3e-07 Score=103.21 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=40.4
Q ss_pred eEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-----------ccceEEEEccC
Q 046656 144 SGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-----------PQRTAAYISQH 206 (1326)
Q Consensus 144 s~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----------~~~~~~yv~Q~ 206 (1326)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 799999999999999999999999987 899999998762211 13457888874
No 304
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.03 E-value=5e-06 Score=100.43 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hcCCEEEEEecCCc
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVKNTV----ETGRTVVCTIHQPS 1022 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEP----------tsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1022 (1326)
+++++|-.++++....|.|||+||+ ++|.|......+.+++..+- ..+..||.+||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6788888899999999999999999 44677776666667776652 34778999999975
No 305
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.01 E-value=3.8e-06 Score=98.47 Aligned_cols=157 Identities=15% Similarity=0.067 Sum_probs=86.7
Q ss_pred EEEEecCCCCChhHHHHHHhcccCCC-------C-ceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH---HHHH
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLDSS-------L-KVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR---ETLA 220 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~~~-------~-~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~---E~l~ 220 (1326)
.++|+|+||||||||++.|+|..... . ..+|.|.++|.++. .....|++.|.+ ...|. .++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 48999999999999999999986411 0 24789999885432 123455555422 11221 1221
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
........-.-++. + .|+.. ..+....+..+++.+++.+..--.|+|. ..-+|+|+
T Consensus 254 ~~~~aD~il~VvD~----s--------~~~~~-----------~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~ 309 (364)
T 2qtf_A 254 EAKYSDALILVIDS----T--------FSENL-----------LIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDL 309 (364)
T ss_dssp GGGGSSEEEEEEET----T--------SCHHH-----------HHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCH
T ss_pred HHHhCCEEEEEEEC----C--------CCcch-----------HHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchH
Confidence 11000000000000 0 00000 0011122455677777765543444543 33478888
Q ss_pred hHHHHHH----HHh-hcCCccceEecCCCCCCHHHHHHHHHHHHHHHH
Q 046656 301 KKRLTTG----EMM-VGPALALFMDEISNGLDSSTTFHIVNSLRQNIH 343 (1326)
Q Consensus 301 kqRvsia----~al-~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~ 343 (1326)
++|+.++ +.+ ..++++ +|+|++|......+.+.+.+...
T Consensus 310 ~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 310 YKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 8988877 554 333343 89999999999999998887644
No 306
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.99 E-value=2.6e-06 Score=98.95 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=27.1
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+-+++|+++.|.||+|+|||||+..+++..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999999998753
No 307
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.97 E-value=2.3e-06 Score=100.32 Aligned_cols=150 Identities=15% Similarity=0.105 Sum_probs=85.3
Q ss_pred CeE-EEEeccCCCChhhHHhhhcCCCCC---------CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH---
Q 046656 848 GVL-TALMGVSGAGKTTLMDVLAGRKTG---------GYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE--- 914 (1326)
Q Consensus 848 Ge~-~al~G~nGaGKSTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E--- 914 (1326)
|-. ++|+|++|||||||++.|+|.... ++..|.+.++|.+. .+....|++.+.+. ..+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~----~lve~f~~ 250 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPP----QIVDAFFV 250 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCG----GGHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCH----HHHHHHHH
Confidence 444 999999999999999999996431 14578999988543 12233465544221 11111
Q ss_pred HHHHHH--H--hh-cc-CCCC--HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH----HHH-hhCCc
Q 046656 915 SLLYSA--W--LR-LR-TEVD--SETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIA----VEL-VANPS 981 (1326)
Q Consensus 915 ~l~f~~--~--lr-~~-~~~~--~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia----~aL-~~~p~ 981 (1326)
.+.... . +. .. .+.. ..+..+.+.++++.+++.+..--.++.. ..-+|+|+++|+.++ +++ ..+|+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 111000 0 00 00 1111 1222334567788877654431111110 123677788888877 555 33445
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 046656 982 IIFMDEPTSGLDARAAAIVMRTVKNTVE 1009 (1326)
Q Consensus 982 illLDEPtsgLD~~~~~~i~~~l~~~~~ 1009 (1326)
+ +|+|++|......+.+.|.+...
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999888654
No 308
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.97 E-value=4e-07 Score=97.69 Aligned_cols=72 Identities=14% Similarity=0.061 Sum_probs=49.4
Q ss_pred eEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC--ccceEEEEccCCCCCCCCCHHHHHHh
Q 046656 144 SGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRTAAYISQHDVHIGEMTVRETLAF 221 (1326)
Q Consensus 144 s~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 221 (1326)
....++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|++...+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3556789999999999999999999999975 77888887654211 11245788887555555566666654
Q ss_pred h
Q 046656 222 S 222 (1326)
Q Consensus 222 ~ 222 (1326)
.
T Consensus 96 ~ 96 (200)
T 4eun_A 96 A 96 (200)
T ss_dssp H
T ss_pred H
Confidence 3
No 309
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.91 E-value=5.4e-07 Score=96.61 Aligned_cols=56 Identities=25% Similarity=0.181 Sum_probs=37.6
Q ss_pred eeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCccc--ccceEEEeecC
Q 046656 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET--FTRISGYCEQN 903 (1326)
Q Consensus 842 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~--~~~~~gyv~Q~ 903 (1326)
....++|++++|+|+||||||||+++|++.. |.+.++|.+..... .+...|+++|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 3556789999999999999999999999854 67888886653211 11234666664
No 310
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.89 E-value=2.9e-07 Score=100.35 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=39.3
Q ss_pred eeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-----------ccccceEEEeecC
Q 046656 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-----------ETFTRISGYCEQN 903 (1326)
Q Consensus 842 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~Q~ 903 (1326)
++++.+ ++++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999998763 47899998876521 1124567888874
No 311
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.86 E-value=8.5e-06 Score=93.93 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=80.9
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESL 916 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l 916 (1326)
-|+.+.+-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.= .++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~-------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--N-------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--H-------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--H-------cC---------CeEEEEeC------CCCHHHHH
Confidence 5667777799999999999999999999988875321 0 11 11233221 12322211
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 046656 917 LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996 (1326)
Q Consensus 917 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~ 996 (1326)
.++......+++..+.+ | .||.++.+|+..|...+.++++.+.|+|...+|
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred ------------------HHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 11111122222222222 2 499999999999999999999999999875533
Q ss_pred HHHHHHHHHHHHhc--CCEEEEEec
Q 046656 997 AAIVMRTVKNTVET--GRTVVCTIH 1019 (1326)
Q Consensus 997 ~~~i~~~l~~~~~~--g~tvi~~~H 1019 (1326)
.|...++++.++ |..+|++-|
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEec
Confidence 455566666543 677777743
No 312
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.86 E-value=6.9e-06 Score=105.66 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEE-ecCCcHHHHHHhceeeEE
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCT-IHQPSIDIFEAFDELFLM 1035 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~D~v~~l 1035 (1326)
-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.+.....++|+++ ||++. .+.+.+++.-++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 379999999999999999999999999996 999877766666666554445677775 88764 566677654333
No 313
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.82 E-value=3.4e-05 Score=93.17 Aligned_cols=34 Identities=38% Similarity=0.668 Sum_probs=30.0
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++++++.+++| ++|.||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 567788888877 8899999999999999999975
No 314
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.79 E-value=1.2e-05 Score=85.85 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHH
Q 046656 303 RLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNI 342 (1326)
Q Consensus 303 Rvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~ 342 (1326)
....|++++.+|++.++| ||++|.....++++.+.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 356789999999999999 99999999999998887643
No 315
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.78 E-value=6.4e-07 Score=108.85 Aligned_cols=49 Identities=37% Similarity=0.569 Sum_probs=43.0
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE 193 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 193 (1326)
.+++++++.+++| ++|.||||+|||||+++|+|... .|.+.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 4689999999999 99999999999999999999875 6789999876543
No 316
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.78 E-value=9.4e-06 Score=85.28 Aligned_cols=36 Identities=28% Similarity=0.262 Sum_probs=33.1
Q ss_pred cceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC
Q 046656 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS 177 (1326)
Q Consensus 141 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~ 177 (1326)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 7889999999 99999999999999999999987654
No 317
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.76 E-value=3.8e-05 Score=89.95 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe--cCCc
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVKNTVETGRTVVCTI--HQPS 1022 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLD-EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~~ 1022 (1326)
.+|++++|++. +.+...++-++++| +|++|+|......+.+.+.+... +..+|++. ||..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 47999998876 55555677788999 99999999988888777776543 77888888 7653
No 318
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.72 E-value=5.8e-06 Score=95.07 Aligned_cols=81 Identities=14% Similarity=0.026 Sum_probs=61.0
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---------c---cceEEEE-cc
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---------P---QRTAAYI-SQ 205 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~---~~~~~yv-~Q 205 (1326)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998765 789998877653211 1 3457888 77
Q ss_pred CCCCCCCCCHHHHHHhh
Q 046656 206 HDVHIGEMTVRETLAFS 222 (1326)
Q Consensus 206 ~d~~~~~lTV~E~l~f~ 222 (1326)
.....|..++++++...
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555667776653
No 319
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.71 E-value=1.1e-05 Score=86.51 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=28.0
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccCCC
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS 177 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~ 177 (1326)
.+++|++++|+||||||||||++.|++.+.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998554
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.62 E-value=1.3e-05 Score=84.79 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=25.0
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
|++++|+||||||||||+++|+|.+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 578999999999999999999999864
No 321
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.61 E-value=1.8e-05 Score=84.66 Aligned_cols=40 Identities=25% Similarity=0.066 Sum_probs=25.6
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
...+++|||+.+++|++++|+|||||||||+.+.|++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4568999999999999999999999999999999998763
No 322
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.61 E-value=5.3e-06 Score=92.36 Aligned_cols=62 Identities=19% Similarity=0.073 Sum_probs=45.8
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHh---cccCCCCceeeEEE--------ECCccCCCCC----ccceEEEE
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALA---GQLDSSLKVSGRVT--------YNGHDMNEFV----PQRTAAYI 203 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~--------~~G~~~~~~~----~~~~~~yv 203 (1326)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.+. .+|.++.+.. ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 887666 89998 8888774321 12457788
Q ss_pred ccC
Q 046656 204 SQH 206 (1326)
Q Consensus 204 ~Q~ 206 (1326)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 775
No 323
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.61 E-value=9.1e-05 Score=85.15 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=30.9
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
.-|+++.+-+++|+++.|.|++|+|||||...++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 35777777899999999999999999999888874
No 324
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.61 E-value=3.4e-06 Score=90.36 Aligned_cols=52 Identities=23% Similarity=0.334 Sum_probs=42.5
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEE--EECCccC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRV--TYNGHDM 191 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V--~~~G~~~ 191 (1326)
..+..++++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchh
Confidence 3445667777778999999999999999999999999986 2 5776 7777554
No 325
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.61 E-value=9.7e-05 Score=85.14 Aligned_cols=139 Identities=18% Similarity=0.203 Sum_probs=87.1
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
...-|+.+.+-+.+|+++.|.|+||+|||||+.-++..... .| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 34568888888999999999999999999999999876431 11 13455432 3443
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
.+... |+ ... ..+ +.+.+..+ | .
T Consensus 87 ~ql~~---Rl-------------ls~--~~~-------------------------------v~~~~l~~---g-----~ 109 (338)
T 4a1f_A 87 EQLAL---RA-------------LSD--LTS-------------------------------INMHDLES---G-----R 109 (338)
T ss_dssp HHHHH---HH-------------HHH--HHC-------------------------------CCHHHHHH---T-----C
T ss_pred HHHHH---HH-------------HHH--hhC-------------------------------CCHHHHhc---C-----C
Confidence 33221 00 000 000 00000000 1 4
Q ss_pred CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
||+++++|++.|...+.++++++.|+|...+ .+|...++++....++..+|++ |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-----~~i~~~ir~l~~~~gg~~lIVI-----------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-----EQIRLQLRKLKSQHKELGIAFI-----------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----HHHHHHHHHHHHHCTTEEEEEE-----------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----HHHHHHHHHHHHhcCCCCEEEE-----------echHHhcC
Confidence 9999999999998888888999999986442 3566666666544324444443 77777754
No 326
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.61 E-value=4.4e-06 Score=92.58 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=35.4
Q ss_pred eEEEecc-cceeccchhhhccccccCceEeeecceeEEeC---CeEEEEeccCCCChhhHHhhhcCCC
Q 046656 809 SLTFDDV-TYSADMPKEMKLKGVHEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 809 ~l~~~~v-~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~---Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++++|+ ++.++ +...+|+|+|+.|++ |++++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4778888 77652 124599999999999 9999999999999999999999754
No 327
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.54 E-value=4.5e-05 Score=98.16 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=57.2
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCC-CCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISN-GLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++.+++...+.+++++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 44589999999999999999999999999996 9998877777776665421 22455556688877777888753
No 328
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.53 E-value=2.8e-05 Score=83.20 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.4
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
++++|++++|+|+||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999764
No 329
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.51 E-value=2.9e-05 Score=98.30 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=72.0
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCCCCCCCCHHHHHHHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---TFTRISGYCEQNDIHSPLVTVYESLLYS 919 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~ 919 (1326)
+.+++|..++|+|++|+|||||++.|++........|+| .+|...... ..++.+++..|...+... ++
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~------- 74 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GH------- 74 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TE-------
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CE-------
Confidence 457789999999999999999999999643211234666 455433211 112223333332111100 00
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 046656 920 AWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999 (1326)
Q Consensus 920 ~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~ 999 (1326)
...+.|+ ||...++ .......-..+.-++++| |+.|+|+.+...
T Consensus 75 --------------------------~~nliDT----pG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~ 118 (665)
T 2dy1_A 75 --------------------------RVFLLDA----PGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERA 118 (665)
T ss_dssp --------------------------EEEEEEC----CCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH
T ss_pred --------------------------EEEEEeC----CCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHH
Confidence 0011221 2211222 112222335677889999 999999887743
Q ss_pred HHHHHHHHHhcCCEEEEEecCCcH
Q 046656 1000 VMRTVKNTVETGRTVVCTIHQPSI 1023 (1326)
Q Consensus 1000 i~~~l~~~~~~g~tvi~~~H~~~~ 1023 (1326)
+ +.+.+.+.++|+++|..+.
T Consensus 119 ~----~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 119 W----TVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp H----HHHHHTTCCEEEEEECGGG
T ss_pred H----HHHHHccCCEEEEecCCch
Confidence 2 3333458889999997653
No 330
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.51 E-value=7.5e-06 Score=90.69 Aligned_cols=41 Identities=39% Similarity=0.479 Sum_probs=36.7
Q ss_pred ccceeecceeEEEeC---ceEEEEecCCCCChhHHHHHHhcccC
Q 046656 135 KHLTILKDVSGIIKP---GRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~---G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
...++|+|+|+.+++ |+.++|+|++||||||+.++|++.+.
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345699999999999 99999999999999999999999764
No 331
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.48 E-value=3.9e-05 Score=80.57 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=30.9
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEEC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYN 187 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~ 187 (1326)
.+|++++|+||||||||||++.|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 368999999999999999999999987642 35666543
No 332
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.45 E-value=1.9e-05 Score=90.74 Aligned_cols=50 Identities=20% Similarity=0.146 Sum_probs=41.0
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
+++++++.+++|++++|+|+||+||||++..|++... ...|+|.+.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 3478999999999999999999999999999999654 2357888877664
No 333
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.42 E-value=3.5e-05 Score=80.87 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=30.2
Q ss_pred ecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 839 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 839 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+++++.+.+| +++|+|+||||||||+++|.+..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 6788999999 99999999999999999998754
No 334
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.42 E-value=8.5e-07 Score=107.73 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=80.3
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCccc---ccceEEEeecCCC-CCCCCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET---FTRISGYCEQNDI-HSPLVT 911 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~---~~~~~gyv~Q~~~-~~~~~T 911 (1326)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+..... ..+.+..++|... ..|.++
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 4788999999999 89999999999999999998653 467888886643211 1123445565543 344455
Q ss_pred HHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 046656 912 VYESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990 (1326)
Q Consensus 912 v~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts 990 (1326)
+.|++......+.. ......+..+.+.+++. .|||||+|+..|+++...+|++ |||+..
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 55555321111110 00112233333444443 2677777888888888888887 788765
No 335
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.38 E-value=1.5e-05 Score=88.65 Aligned_cols=57 Identities=23% Similarity=0.133 Sum_probs=44.9
Q ss_pred eCCeEEEEeccCCCChhhHHhhhc---CCCCCCeeEEEEE--------EcCccCCc----ccccceEEEeecCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYISGNIT--------ISGYPKKQ----ETFTRISGYCEQND 904 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~Q~~ 904 (1326)
++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 8755 5678888 88876632 13445678888754
No 336
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.36 E-value=0.00027 Score=80.61 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=82.7
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEE-cCccCCcccccceEEEeecCCCCCC-CCCHHHHHHHHHHhhcc
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI-SGYPKKQETFTRISGYCEQNDIHSP-LVTVYESLLYSAWLRLR 925 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i-~g~~~~~~~~~~~~gyv~Q~~~~~~-~~Tv~E~l~f~~~lr~~ 925 (1326)
+..++|+|++|+|||||++.|.|... .+ .+.+ ..+..+..|++.+++..+. .-|+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~--------~i~s~~~--~tTr~~~~gi~~~~~~~i~~iDTp------------- 64 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKI--------SITSRKA--QTTRHRIVGIHTEGAYQAIYVDTP------------- 64 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSE--------EECCCCS--SCCSSCEEEEEEETTEEEEEESSS-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc--------cccCCCC--CcceeeEEEEEEECCeeEEEEECc-------------
Confidence 34899999999999999999998642 11 1222 1223455677777643211 0011
Q ss_pred CCCCHHHHHHHHHHHHHHcCCc--cccccccc-CCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCCCHHH-HHH
Q 046656 926 TEVDSETRKMFIEEIMELVELK--PLRQSLVG-LPGESGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAI 999 (1326)
Q Consensus 926 ~~~~~~~~~~~v~~~l~~l~l~--~~~~~~vg-~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPtsgLD~~~-~~~ 999 (1326)
....+.. ....+.+...-.. ...|..+= ..... +|.|++ .+++.+. ..|.++++ +.+|... ...
T Consensus 65 -G~~~~~~-~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 65 -GLHMEEK-RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp -SCCHHHH-HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred -CCCccch-hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 0110000 0011111000000 01111110 01123 899987 4566666 67999998 7899876 566
Q ss_pred HHHHHHHHHhc-CC--EEEEEecCCcHHHHHHhceeeE
Q 046656 1000 VMRTVKNTVET-GR--TVVCTIHQPSIDIFEAFDELFL 1034 (1326)
Q Consensus 1000 i~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~D~v~~ 1034 (1326)
+.+.++++.+. |. .+.+++|+-. .+.+++|.+.-
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~~ 171 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVRK 171 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHHH
Confidence 77888877653 43 5666777654 46667776653
No 337
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.36 E-value=0.00025 Score=83.08 Aligned_cols=57 Identities=11% Similarity=0.160 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEec
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG-RTVVCTIH 1019 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1019 (1326)
.+..++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| ++|++.++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764334445433 34455666655445 57777766
No 338
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.36 E-value=3e-05 Score=81.86 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.8
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
|++++|+||||||||||+++|+|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999764
No 339
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=6.9e-05 Score=79.97 Aligned_cols=38 Identities=29% Similarity=0.150 Sum_probs=24.4
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
...++|||+.+++|++++|+|++||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999754
No 340
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.33 E-value=0.00035 Score=82.29 Aligned_cols=44 Identities=9% Similarity=0.039 Sum_probs=35.2
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEecCCc
Q 046656 978 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE---TGRTVVCTIHQPS 1022 (1326)
Q Consensus 978 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1022 (1326)
.+|.+|++||+..- |......+.+.+.+... .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888777766554 5788999999874
No 341
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.31 E-value=4.8e-05 Score=83.29 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=35.5
Q ss_pred eeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccC
Q 046656 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191 (1326)
Q Consensus 143 vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 191 (1326)
-++..++|++++|.|++|||||||+++|+|. .|+|.+.|.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445579999999999999999999999997 47788887654
No 342
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.29 E-value=2.8e-05 Score=83.45 Aligned_cols=70 Identities=6% Similarity=0.044 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHH-HHHHhceeeEEe
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSID-IFEAFDELFLMK 1036 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~D~v~~l~ 1036 (1326)
+.|+.+|..++..+..+|+.+..+ ++.++|.....+.+.++.. .+.++|+.+|..... +...||.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678888889988888887643322 3345555555555444332 356888888865321 245578777775
No 343
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.29 E-value=4.5e-05 Score=83.51 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=34.3
Q ss_pred eeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 842 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
++..++|++++|.|+||||||||+++|+|. .|+|.+++.|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 344578999999999999999999999986 36688887664
No 344
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.27 E-value=4.4e-05 Score=89.51 Aligned_cols=44 Identities=36% Similarity=0.338 Sum_probs=39.4
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEE
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTY 186 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 186 (1326)
..+|+++++.+++|++++|+||||||||||+++|+|.. +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999964 577654
No 345
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.27 E-value=3.8e-05 Score=90.14 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=27.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
..+|+++++.++ .++|+|++|||||||+++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
No 346
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.20 E-value=0.00015 Score=78.05 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=27.3
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
No 347
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.19 E-value=0.00012 Score=76.86 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=29.7
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG 885 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 885 (1326)
+|++++|+||||||||||++.|++.... ...|.|....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~tt 41 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHTT 41 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeeccC
Confidence 6899999999999999999999986542 1345555443
No 348
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.18 E-value=8.4e-05 Score=79.48 Aligned_cols=41 Identities=27% Similarity=0.121 Sum_probs=34.4
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
.++|++++|+|+||||||||++.|++.+++. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 5689999999999999999999999998654 6777665543
No 349
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.17 E-value=0.00078 Score=77.32 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=33.8
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
...-|+++.+-+++|+++.|.|+||+|||||+..++...
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345688888889999999999999999999998888653
No 350
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.16 E-value=0.00014 Score=77.25 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=26.5
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999999875
No 351
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.13 E-value=0.00033 Score=74.95 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=38.0
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhH--HhhCCeEEEec
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPET--YDLFDDIILLS 371 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~--~~~~D~vilL~ 371 (1326)
+.|+.+|..+++.+..+|+.+.++ .+.+++.....+.+.++.. .++.+|+ -.+...+. ...||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~-~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLF-VVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEE-ECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEE-EechhhhcCcHhhCCEEEEEE
Confidence 678999999999988888765444 3345666655555544331 2344443 34444343 56788877763
No 352
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.13 E-value=0.0017 Score=73.50 Aligned_cols=60 Identities=27% Similarity=0.297 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----cCCEEEEEecCCc
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVKNTVE----TGRTVVCTIHQPS 1022 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~~~ 1022 (1326)
+++++.|..++.+...+|.+||+||+.+-++.. ....++..+..... .+..||+++++|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 457777777888888899999999998776532 22233333333211 2356788898764
No 353
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.13 E-value=0.0013 Score=76.27 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=28.7
Q ss_pred eecce-eEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 838 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 838 L~~vs-~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
|+.+- +-+++|+++.|.|++|+|||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44443 57999999999999999999999988863
No 354
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.12 E-value=0.00015 Score=75.42 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=30.2
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
.+|++++|+|||||||||+++.|++.+ |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 468999999999999999999999974 566676643
No 355
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.09 E-value=0.0015 Score=75.25 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=28.6
Q ss_pred eeecce-eEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 837 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 837 vL~~vs-~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
.|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 344443 5799999999999999999999998875
No 356
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.07 E-value=0.00028 Score=75.61 Aligned_cols=30 Identities=30% Similarity=0.190 Sum_probs=27.3
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+++|++++|+|+||||||||++.|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999999999763
No 357
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.06 E-value=5.3e-05 Score=86.77 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=31.8
Q ss_pred ceeecceeEEEeCce------EEEEecCCCCChhHHHHHHhcccCC
Q 046656 137 LTILKDVSGIIKPGR------MTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~------~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
...|++++..+..++ +++|+||||||||||+++|.+.+..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345566666655554 9999999999999999999999863
No 358
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.06 E-value=0.0014 Score=76.60 Aligned_cols=57 Identities=9% Similarity=0.174 Sum_probs=42.2
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEe-cCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMD-EISNGLDSSTTFHIVNSLRQNIHILNGTAVISL 353 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLD-EptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i 353 (1326)
..+|+||+|++. +.+...++-++++| ++.+|+|......+++.+..... +.+++++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 358999998876 55556778889999 99999999988888877776432 34554443
No 359
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.05 E-value=0.003 Score=71.49 Aligned_cols=27 Identities=44% Similarity=0.691 Sum_probs=24.3
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++.-++|.||||+|||||++++++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999975
No 360
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.02 E-value=9.1e-05 Score=79.09 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=39.6
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEE--EEcCccC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNI--TISGYPK 888 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i--~i~g~~~ 888 (1326)
...++.++..++|++++|+|+||||||||.++|++... ..|.+ .++|.+.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 35566777778999999999999999999999998653 23555 7877554
No 361
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.01 E-value=0.0032 Score=73.04 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=30.0
Q ss_pred eeccee-EEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 139 ILKDVS-GIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 139 iL~~vs-~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 57999999999999999999999999886
No 362
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.00 E-value=0.0024 Score=73.57 Aligned_cols=36 Identities=33% Similarity=0.368 Sum_probs=30.5
Q ss_pred eeccee-EEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 139 ILKDVS-GIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 139 iL~~vs-~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.|+.+- +-+++|+++.|.||||||||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 455543 679999999999999999999999998764
No 363
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.00 E-value=0.00011 Score=86.18 Aligned_cols=37 Identities=22% Similarity=0.089 Sum_probs=34.7
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.+|+++++.+++|++++|+||||||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4899999999999999999999999999999999853
No 364
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.97 E-value=0.00028 Score=75.85 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.0
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999764
No 365
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.96 E-value=0.00012 Score=92.72 Aligned_cols=47 Identities=32% Similarity=0.273 Sum_probs=34.9
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE 193 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 193 (1326)
+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|....+
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTD 50 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccccc
Confidence 457789999999999999999999999876431 236777 56655443
No 366
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.95 E-value=0.0014 Score=78.96 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=92.0
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC--CCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
-|+.+.+-+++|+++.|.|++|+|||||..-++.... .+ ..-+.++.. ++..+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~slE-----------------------~~~~~ 243 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSLE-----------------------MPAAQ 243 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEESS-----------------------SCHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEECC-----------------------CCHHH
Confidence 4666667799999999999999999999988875321 01 001122211 12111
Q ss_pred HHH-H-HHHhhcc------CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCcEEE
Q 046656 915 SLL-Y-SAWLRLR------TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV--ANPSIIF 984 (1326)
Q Consensus 915 ~l~-f-~~~lr~~------~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~--~~p~ill 984 (1326)
-.. + +.....+ ..++..+ ..++.+.++.+.-.++. +-. ..++|..+- .+.++.+. .+|++++
T Consensus 244 l~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIv 315 (444)
T 2q6t_A 244 LTLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLII 315 (444)
T ss_dssp HHHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEE
T ss_pred HHHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEE
Confidence 110 0 0000000 1122222 22333444443222211 111 124777765 34556665 4799999
Q ss_pred EeCCCCCCCH----------HHHHHHHHHHHHHHhc-CCEEEEEecC-----------CcH-------HHHHHhceeeEE
Q 046656 985 MDEPTSGLDA----------RAAAIVMRTVKNTVET-GRTVVCTIHQ-----------PSI-------DIFEAFDELFLM 1035 (1326)
Q Consensus 985 LDEPtsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H~-----------~~~-------~~~~~~D~v~~l 1035 (1326)
+|..+.=.+. .....+.+.|+.++++ |++||+++|- |.. .+...+|.+++|
T Consensus 316 ID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L 395 (444)
T 2q6t_A 316 IDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFI 395 (444)
T ss_dssp EECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEE
T ss_pred EcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEE
Confidence 9998754322 1224677778887754 9999999983 210 234567888888
Q ss_pred ec
Q 046656 1036 KR 1037 (1326)
Q Consensus 1036 ~~ 1037 (1326)
.+
T Consensus 396 ~r 397 (444)
T 2q6t_A 396 YR 397 (444)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 367
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.91 E-value=0.00019 Score=88.16 Aligned_cols=42 Identities=33% Similarity=0.400 Sum_probs=35.9
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccCCCCceee-EEE-ECCcc
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSG-RVT-YNGHD 190 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~-~~G~~ 190 (1326)
.+++|++++|+|+||||||||+++|+|.+.+. +| ++. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57899999999999999999999999999875 55 674 77743
No 368
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.83 E-value=0.0045 Score=72.70 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=25.0
Q ss_pred Cce--EEEEecCCCCChhHHHHHHhcccCC
Q 046656 149 PGR--MTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 149 ~G~--~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
++. .++|.||+|+|||||++.+++.+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445 8999999999999999999998865
No 369
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.83 E-value=0.00039 Score=71.95 Aligned_cols=27 Identities=41% Similarity=0.562 Sum_probs=24.6
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
No 370
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.83 E-value=0.00061 Score=69.11 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=25.4
Q ss_pred cceeEEEeCceEEEEecCCCCChhHHHHHHhc
Q 046656 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 141 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G 172 (1326)
++.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445566665 999999999999999999974
No 371
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.82 E-value=0.0006 Score=73.01 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=26.6
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.+++|++++|+|++||||||+.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999865
No 372
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.82 E-value=0.00027 Score=73.40 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=29.7
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
.+|++++|+|+|||||||+.+.|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999999753 456676644
No 373
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.80 E-value=0.00055 Score=82.37 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=48.4
Q ss_pred hCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeE-EecCcEEEEEcCCC
Q 046656 978 ANPSIIFMDEPTSGLDA-RAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFL-MKRGGQEIYVGPLG 1048 (1326)
Q Consensus 978 ~~p~illLDEPtsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~-l~~gg~~~~~G~~~ 1048 (1326)
.+|++||+||+..-.+. .++..+..++..+.+.|+.||+++|.+..++....+++.- +. .|.++..+++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887664 6777888999888878999999999864322112222222 22 35777777764
No 374
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.76 E-value=0.00058 Score=69.27 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=23.8
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhc
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 869 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 869 (1326)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 334455565 89999999999999999986
No 375
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.74 E-value=0.0017 Score=77.27 Aligned_cols=26 Identities=38% Similarity=0.379 Sum_probs=23.6
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
++.+++++|++|+||||++..|++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999754
No 376
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.74 E-value=0.00024 Score=75.98 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=31.9
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
.++|++++|+|+||||||||++.|++... ...|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 57899999999999999999999998653 124566665443
No 377
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.67 E-value=0.00011 Score=84.20 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=33.9
Q ss_pred CceEeeecceeEEeCCe------EEEEeccCCCChhhHHhhhcCCCC
Q 046656 833 DKLVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge------~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
+....|++++..+..++ ++||+||||||||||+++|.+...
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34457778887777776 999999999999999999998653
No 378
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.64 E-value=0.00061 Score=72.24 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=25.2
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
.+|++++|+||||||||||++.|++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999998643
No 379
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.64 E-value=0.0005 Score=80.74 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.8
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999999753
No 380
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.62 E-value=0.0014 Score=84.76 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=27.8
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
+.+++|+.+.|+||||+|||||+++|++...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999999999998753
No 381
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.61 E-value=0.00022 Score=82.93 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=40.4
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNG 188 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 188 (1326)
..+++++++..++|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 35778888888999999999999999999999999988654 55555433
No 382
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.57 E-value=0.00046 Score=79.62 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=42.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeee--------------cceeEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~--------------~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+.|+|+++.++. .+..|+ |+.+.+.+|+.++|+|++|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4678888776642 234677 89999999999999999999999999999874
No 383
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.57 E-value=0.00058 Score=79.54 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=33.7
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 191 (1326)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecC
Confidence 467899999999999999999999987665 67777665443
No 384
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.48 E-value=0.0015 Score=74.49 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.8
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46788899999999999999999999754
No 385
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.47 E-value=0.0007 Score=81.43 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=39.2
Q ss_pred cCCccceEecCCCCCCH-HHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE-ecCCeEEEEcCh
Q 046656 312 GPALALFMDEISNGLDS-STTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL-LSDGQIVYQGPC 381 (1326)
Q Consensus 312 ~~~~illLDEptsgLD~-~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil-L~~G~iv~~G~~ 381 (1326)
.++++|++||+..-.+. .+...+++.+..+.. .+..+|++.+.+..++..+.+++.- +..|.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 37899999999887764 567778887776533 3445555444344332222222222 344555544443
No 386
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.44 E-value=0.0048 Score=73.33 Aligned_cols=35 Identities=29% Similarity=0.190 Sum_probs=29.3
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEE
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTY 186 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 186 (1326)
++.+++++||+||||||++..|++.+.+. .++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEE
Confidence 68999999999999999999999988654 455544
No 387
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.43 E-value=0.0011 Score=72.27 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=27.8
Q ss_pred ecceeEEEe---CceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 140 LKDVSGIIK---PGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 140 L~~vs~~i~---~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
|.++|+.+. +|.+++|.||+||||||+++.|+..+.+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 677777776 8999999999999999999999998863
No 388
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.42 E-value=0.00038 Score=85.99 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=40.0
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNG 188 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 188 (1326)
..+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 34667777777 89999999999999999999999998764 67776655
No 389
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.41 E-value=0.00042 Score=85.20 Aligned_cols=42 Identities=38% Similarity=0.532 Sum_probs=33.8
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEE-EEE-EcCcc
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISG-NIT-ISGYP 887 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~-i~g~~ 887 (1326)
.+++|++++|+|+||||||||+++|+|+..+ ..| ++. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 4689999999999999999999999997642 244 564 77754
No 390
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.39 E-value=0.0028 Score=65.49 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.3
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
No 391
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.39 E-value=0.0083 Score=68.21 Aligned_cols=28 Identities=43% Similarity=0.508 Sum_probs=24.9
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
|...++|.||||+||||+.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4568999999999999999999998754
No 392
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.36 E-value=0.001 Score=68.73 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.5
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999864
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.35 E-value=0.00094 Score=69.67 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=30.2
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceee--EEEECCc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSG--RVTYNGH 189 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~ 189 (1326)
++|++++|+|++||||||+++.|++.+.+ .| .+.++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECCh
Confidence 47999999999999999999999998743 24 4555553
No 394
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.35 E-value=0.0022 Score=76.11 Aligned_cols=46 Identities=24% Similarity=0.099 Sum_probs=36.6
Q ss_pred ecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 839 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 839 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
+++++. +|++++++|+||+||||++..|++.... ..|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 577777 8999999999999999999999986542 246777766553
No 395
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.25 E-value=0.012 Score=64.26 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhce
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDE 1031 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1031 (1326)
+.|.-.+.. ...+.+-+++++||+-. ++|......+++.+.+....-+++++++--+.....+.|+.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456655553 33578899999999966 67776664444444443333356666655444344445543
No 396
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.25 E-value=0.00036 Score=81.68 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=36.9
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 214 (1326)
..+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.............+..|.+.....++
T Consensus 28 ~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~ 98 (361)
T 2qag_A 28 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLT 98 (361)
T ss_dssp HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEE
T ss_pred CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceE
Confidence 3455788888876 999999999999999998874432 3444333322211100112344444433333456
Q ss_pred HHHHHHh
Q 046656 215 VRETLAF 221 (1326)
Q Consensus 215 V~E~l~f 221 (1326)
+.++.-+
T Consensus 99 i~DTpG~ 105 (361)
T 2qag_A 99 VVDTPGY 105 (361)
T ss_dssp EEC----
T ss_pred EEEeccc
Confidence 6666555
No 397
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.25 E-value=0.0037 Score=64.61 Aligned_cols=27 Identities=41% Similarity=0.656 Sum_probs=23.5
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999974
No 398
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.21 E-value=0.00098 Score=71.66 Aligned_cols=40 Identities=30% Similarity=0.353 Sum_probs=33.5
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccCCCCceee--EEEECCc
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSG--RVTYNGH 189 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~ 189 (1326)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 5678999999999999999999999998643 56 6777653
No 399
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.20 E-value=0.0034 Score=75.47 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=39.3
Q ss_pred eEEEEecCCCCChhHHHHHHhcccCC------C---CceeeEEEECCccCCCCC---ccceEEEEccCCCCCCCCCHHHH
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLDS------S---LKVSGRVTYNGHDMNEFV---PQRTAAYISQHDVHIGEMTVRET 218 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~~------~---~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~ 218 (1326)
-.++|+|+||+|||||++.|+|.... . -..+|.+.++|.++.-.+ .++...+.+|....+..++..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 47899999999999999999998531 0 023789999997642211 12233344343333444444455
Q ss_pred HHh
Q 046656 219 LAF 221 (1326)
Q Consensus 219 l~f 221 (1326)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 400
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.19 E-value=0.0018 Score=75.80 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=25.6
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
.+++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45779999999999999999999998743
No 401
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.16 E-value=0.052 Score=63.01 Aligned_cols=30 Identities=43% Similarity=0.614 Sum_probs=26.9
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+-+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999999888764
No 402
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.14 E-value=0.0028 Score=67.76 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=25.0
Q ss_pred ceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 142 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
+.++.+.+| +++|+|||||||||++.+|.-.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 445556665 9999999999999999998643
No 403
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.12 E-value=0.00048 Score=80.01 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=34.6
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..+++++++.+++|.+++|+|++|||||||++.|++..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999854
No 404
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.11 E-value=0.0038 Score=65.62 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=21.1
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999988887 7799999999999999999973
No 405
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.10 E-value=0.0024 Score=68.30 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=23.7
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhc
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 869 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 869 (1326)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 334555665 99999999999999999985
No 406
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.09 E-value=0.0054 Score=73.63 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=29.1
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
-|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4666666689999999999999999999887775
No 407
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.03 E-value=0.0044 Score=74.51 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=30.1
Q ss_pred EEEEeccCCCChhhHHhhhcCCCC----------CCeeEEEEEEcCcc
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRKT----------GGYISGNITISGYP 887 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~~----------~~~~~G~i~i~g~~ 887 (1326)
.++|+|+||+|||||++.|+|... .++..|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999642 11346888898874
No 408
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.01 E-value=0.025 Score=61.77 Aligned_cols=42 Identities=10% Similarity=0.107 Sum_probs=28.4
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEEec
Q 046656 978 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE--TGRTVVCTIH 1019 (1326)
Q Consensus 978 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1019 (1326)
.+|+++++..+.+.++......+...++.... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999998888888665555544443321 1358888888
No 409
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.00 E-value=0.00062 Score=79.64 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=32.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.+.+++++..+. ++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 17 ~v~~~~l~~~~~-------------~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVH-------------RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHH-------------THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhC-------------CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 356677765432 244778888866 999999999999999998853
No 410
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.00 E-value=0.018 Score=62.77 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.3
Q ss_pred EEEEecCCCCChhHHHHHHhcccCC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5789999999999999999997653
No 411
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.98 E-value=0.0024 Score=68.16 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=26.4
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46889999999999999999999998874
No 412
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.97 E-value=0.0043 Score=65.21 Aligned_cols=34 Identities=38% Similarity=0.463 Sum_probs=21.0
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 788999988887 5689999999999999999984
No 413
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.97 E-value=0.0075 Score=67.73 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.8
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+.++.-+.|.||+|+|||||.++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3556679999999999999999999754
No 414
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.96 E-value=0.0032 Score=65.48 Aligned_cols=40 Identities=28% Similarity=0.239 Sum_probs=30.4
Q ss_pred eEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999999865432224777776644
No 415
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.96 E-value=0.0026 Score=68.93 Aligned_cols=37 Identities=32% Similarity=0.365 Sum_probs=27.8
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEE
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTY 186 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 186 (1326)
+.+++|+|||||||||+.+.|++.+.-..--+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999976311011566654
No 416
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.91 E-value=0.024 Score=65.87 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.4
Q ss_pred eecce--eEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 838 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 838 L~~vs--~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44443 3589999999999999999999988875
No 417
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.89 E-value=0.0031 Score=66.10 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=26.6
Q ss_pred ceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 142 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999986
No 418
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.88 E-value=0.0015 Score=76.11 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=30.9
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
+++.+++|+|++|||||||++.|+|... +..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeec
Confidence 4688999999999999999999998543 124566665544
No 419
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.86 E-value=0.0033 Score=68.54 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=26.3
Q ss_pred eeecceeEEe---CCeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 837 LLNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 837 vL~~vs~~i~---~Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
-|.++++++. +|.+++|.|++||||||+++.|+....
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3566667666 899999999999999999999998654
No 420
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.82 E-value=0.0017 Score=80.27 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=39.8
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
.+++++++.+ +|+.+.|+||||+|||||+++|++... ...|.|.++|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 4677888887 899999999999999999999998764 346888777643
No 421
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.81 E-value=0.0028 Score=66.49 Aligned_cols=30 Identities=43% Similarity=0.571 Sum_probs=26.9
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
.++|.++.|+|++||||||+.+.|++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999999998764
No 422
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.79 E-value=0.0023 Score=67.89 Aligned_cols=35 Identities=34% Similarity=0.478 Sum_probs=30.4
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47888888888875 689999999999999999874
No 423
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.77 E-value=0.011 Score=63.86 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=41.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------CCcHHHHHHhceeeEEe
Q 046656 979 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH---------QPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 979 ~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~D~v~~l~ 1036 (1326)
+|+++++||.-. |+.. +.+.++.+++.|.+||++-| .++.++.+.+|+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 6543 45566777767999999999 56678888899998875
No 424
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.71 E-value=0.0028 Score=70.24 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=32.2
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|-.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHH
Confidence 456788999999999999999999999874 2456666643
No 425
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.65 E-value=0.0035 Score=74.34 Aligned_cols=45 Identities=24% Similarity=0.128 Sum_probs=38.5
Q ss_pred cceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 141 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 577777 89999999999999999999999998765 6778776644
No 426
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.64 E-value=0.003 Score=66.97 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.6
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788888888887 5789999999999999999874
No 427
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.61 E-value=0.0023 Score=69.96 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHhhcCCccceEecCCC-CCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 298 GGQKKRLTTGEMMVGPALALFMDEISN-GLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 298 GGqkqRvsia~al~~~~~illLDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.|.-.+.. .....+-+++++||.-. ++|.......++.+..... ...+++++.+.+.+...++|++
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 34444442 33578889999999966 6877666555555544321 1235556666666666666654
No 428
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.58 E-value=0.025 Score=63.31 Aligned_cols=29 Identities=45% Similarity=0.705 Sum_probs=24.9
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
++++.-++|.||||+|||||+++++..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34566799999999999999999999763
No 429
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.57 E-value=0.0077 Score=63.86 Aligned_cols=113 Identities=13% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT 926 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~ 926 (1326)
+...+.|.||+|+|||||+++|+.... .....+.+ .+..+.+.-........
T Consensus 53 ~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~ 104 (202)
T 2w58_A 53 KMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLI--------------------------VYVPELFRELKHSLQDQ 104 (202)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEE--------------------------EEHHHHHHHHHHC---C
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEE--------------------------EEhHHHHHHHHHHhccc
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC--CCCCCHHHHHHHHHHH
Q 046656 927 EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP--TSGLDARAAAIVMRTV 1004 (1326)
Q Consensus 927 ~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP--tsgLD~~~~~~i~~~l 1004 (1326)
. ..+.++.+ .++++|++||+ ...-|......+...+
T Consensus 105 ~---------~~~~~~~~---------------------------------~~~~~lilDei~~~~~~~~~~~~ll~~~l 142 (202)
T 2w58_A 105 T---------MNEKLDYI---------------------------------KKVPVLMLDDLGAEAMSSWVRDDVFGPIL 142 (202)
T ss_dssp C---------CHHHHHHH---------------------------------HHSSEEEEEEECCC---CCGGGTTHHHHH
T ss_pred h---------HHHHHHHh---------------------------------cCCCEEEEcCCCCCcCCHHHHHHHHHHHH
Q ss_pred HHHHhcCCEEEEEecCCcHHHHHHh
Q 046656 1005 KNTVETGRTVVCTIHQPSIDIFEAF 1029 (1326)
Q Consensus 1005 ~~~~~~g~tvi~~~H~~~~~~~~~~ 1029 (1326)
......+..+|++|+.+..++...+
T Consensus 143 ~~~~~~~~~~i~tsn~~~~~l~~~~ 167 (202)
T 2w58_A 143 QYRMFENLPTFFTSNFDMQQLAHHL 167 (202)
T ss_dssp HHHHHTTCCEEEEESSCHHHHHHHS
T ss_pred HHHHhCCCCEEEEcCCCHHHHHHHH
No 430
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.57 E-value=0.055 Score=61.93 Aligned_cols=124 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhc--------------CCCCCCee-EEEEEEcCccCCcccccceEEEeecCCCCCCC
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLA--------------GRKTGGYI-SGNITISGYPKKQETFTRISGYCEQNDIHSPL 909 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~--------------g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ 909 (1326)
+++|+++.|.|++|+|||||...++ |...++.. ..-++++....-.
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~------------------- 155 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR------------------- 155 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC-------------------
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCC-------------------
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc--------cccccccCCCCCCCCHHHHHHHHHHHHHhhC--
Q 046656 910 VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP--------LRQSLVGLPGESGLSTEQRKRLTIAVELVAN-- 979 (1326)
Q Consensus 910 ~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--------~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~-- 979 (1326)
.+++.+.++.+++.. +.+.. =+..+.+.+..++.++.+
T Consensus 156 ------------------------~~~l~~~~~~~g~~~~~~~~~l~~~~~~--------~~~~~~~~l~~l~~~~~~~~ 203 (322)
T 2i1q_A 156 ------------------------PERIMQMAEHAGIDGQTVLDNTFVARAY--------NSDMQMLFAEKIEDLIQEGN 203 (322)
T ss_dssp ------------------------HHHHHHHHHHHTCCHHHHHHTEEEEECS--------SHHHHHHHHHTHHHHHHTTC
T ss_pred ------------------------HHHHHHHHHHcCCCHHHHhcCEEEEeCC--------CHHHHHHHHHHHHHHHhhcc
Q ss_pred -CcEEEEeCCCCCCCH------------HHHHHHHHHHHHHHhc-CCEEEEEec
Q 046656 980 -PSIIFMDEPTSGLDA------------RAAAIVMRTVKNTVET-GRTVVCTIH 1019 (1326)
Q Consensus 980 -p~illLDEPtsgLD~------------~~~~~i~~~l~~~~~~-g~tvi~~~H 1019 (1326)
++++++|.-+.-... .....+++.|++++++ |++||++.|
T Consensus 204 ~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 204 NIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp EEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
No 431
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.56 E-value=0.0015 Score=75.05 Aligned_cols=37 Identities=27% Similarity=0.463 Sum_probs=32.2
Q ss_pred eecceeEEEeCceE--EEEecCCCCChhHHHHHHhcccC
Q 046656 139 ILKDVSGIIKPGRM--TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 139 iL~~vs~~i~~G~~--~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
++++++..+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56777777788887 99999999999999999999864
No 432
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.54 E-value=0.0026 Score=72.14 Aligned_cols=46 Identities=26% Similarity=0.159 Sum_probs=37.1
Q ss_pred cc-eeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 141 KD-VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 141 ~~-vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 45 777766 9999999999999999999999998654 5667665433
No 433
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.54 E-value=0.005 Score=64.07 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.2
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999854
No 434
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.53 E-value=0.0054 Score=71.87 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=26.0
Q ss_pred eeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 143 vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3345677888999999999999999999997
No 435
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.48 E-value=0.012 Score=60.21 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 436
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.44 E-value=0.0052 Score=66.46 Aligned_cols=56 Identities=21% Similarity=0.075 Sum_probs=37.4
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCCCC-CeeEEEEEE--------cCccCCc----ccccceEEEeecC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRKTG-GYISGNITI--------SGYPKKQ----ETFTRISGYCEQN 903 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~Q~ 903 (1326)
+.+++|+|++||||||+.+.|++.... .+..|++.. +|.+... ..+++.+|+++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 468999999999999999999975321 134566665 5554431 1233456777765
No 437
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.42 E-value=0.042 Score=63.94 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.9
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
++..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999998643
No 438
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.41 E-value=0.0097 Score=68.29 Aligned_cols=45 Identities=4% Similarity=0.093 Sum_probs=34.2
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 046656 977 VANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1021 (1326)
Q Consensus 977 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1021 (1326)
..++.+||+||+-. .-|..++..+...+....+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999865 2344777888888888777777788877754
No 439
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.39 E-value=0.0054 Score=65.38 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.9
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999999998754
No 440
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.38 E-value=0.0075 Score=66.70 Aligned_cols=45 Identities=38% Similarity=0.645 Sum_probs=30.2
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
.++++++..++| ++|.||||+|||||+++|++.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHH
Confidence 355666666665 8899999999999999999987522 35566543
No 441
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.30 E-value=0.035 Score=66.65 Aligned_cols=38 Identities=26% Similarity=0.554 Sum_probs=33.2
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
..-|+.+.+-+++|+++.|.|+||+|||||+..++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577777789999999999999999999999888764
No 442
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.25 E-value=0.015 Score=60.47 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 443
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.21 E-value=0.0071 Score=63.30 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.0
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777888999999999999999999999864
No 444
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.20 E-value=0.0075 Score=64.10 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhHHHHHHhc
Q 046656 152 MTLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G 172 (1326)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
No 445
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.17 E-value=0.0092 Score=62.24 Aligned_cols=27 Identities=41% Similarity=0.679 Sum_probs=23.8
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998754
No 446
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.12 E-value=0.0074 Score=68.64 Aligned_cols=65 Identities=9% Similarity=0.008 Sum_probs=38.6
Q ss_pred CChhhhHHHHHHHHhh--cCCccceEecCCCCCCHHH-HHHHHHHHHHHHHhcCC-EEEEEEecChhhHHhhCCeE
Q 046656 296 ISGGQKKRLTTGEMMV--GPALALFMDEISNGLDSST-TFHIVNSLRQNIHILNG-TAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 296 LSGGqkqRvsia~al~--~~~~illLDEptsgLD~~t-~~~i~~~l~~~~~~~~~-t~ii~i~q~~~~~~~~~D~v 367 (1326)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++....+. .++.+..+....+.+++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 888886 4566666 68889888 7888766 55666777766543332 23332333333444444443
No 447
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.12 E-value=0.026 Score=65.91 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.1
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998643
No 448
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.12 E-value=0.0064 Score=64.61 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCChhHHHHHHhccc
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
No 449
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.10 E-value=0.0093 Score=61.72 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.8
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999999875
No 450
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.09 E-value=0.0084 Score=65.03 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT 926 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~ 926 (1326)
++..+.|.||+|+|||||++.++.... .....+.+-....-.....+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------------------------- 99 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHASISTALL----------------------------- 99 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGGGSCGGGG-----------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHHHHHHHHH-----------------------------
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH--HHHHHHHH
Q 046656 927 EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA--AAIVMRTV 1004 (1326)
Q Consensus 927 ~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~--~~~i~~~l 1004 (1326)
..+.+|.+|++|| ...++... ...+.+.+
T Consensus 100 ------------------------------------------------~~~~~~~vliiDe-~~~~~~~~~~~~~l~~~l 130 (242)
T 3bos_A 100 ------------------------------------------------EGLEQFDLICIDD-VDAVAGHPLWEEAIFDLY 130 (242)
T ss_dssp ------------------------------------------------TTGGGSSEEEEET-GGGGTTCHHHHHHHHHHH
T ss_pred ------------------------------------------------HhccCCCEEEEec-cccccCCHHHHHHHHHHH
Q ss_pred HHHHhcCCE-EEEEecCC
Q 046656 1005 KNTVETGRT-VVCTIHQP 1021 (1326)
Q Consensus 1005 ~~~~~~g~t-vi~~~H~~ 1021 (1326)
....+.+.. +|++++.+
T Consensus 131 ~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 131 NRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp HHHHHHCSCEEEEEESSC
T ss_pred HHHHHcCCCeEEEEcCCC
No 451
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.08 E-value=0.0026 Score=73.67 Aligned_cols=41 Identities=29% Similarity=0.633 Sum_probs=35.4
Q ss_pred cceeecceeEEEeCceE--EEEecCCCCChhHHHHHHhcccCC
Q 046656 136 HLTILKDVSGIIKPGRM--TLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~--~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
...+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34577778888888988 999999999999999999998754
No 452
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.01 E-value=0.0086 Score=61.43 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.8
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998754
No 453
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.00 E-value=0.0092 Score=69.95 Aligned_cols=44 Identities=18% Similarity=0.383 Sum_probs=32.9
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCCC---------CCeeEEEEEEcCc
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYISGNITISGY 886 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---------~~~~~G~i~i~g~ 886 (1326)
+.++.|..++|+|++|+|||||++.|+|... .++..|.+.+.|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3567888999999999999999999999621 1245677777663
No 454
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.96 E-value=0.0042 Score=66.64 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=30.9
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEE--EEEEcC
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISG--NITISG 885 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G--~i~i~g 885 (1326)
+++|.+++|+|++||||||+.+.|++... +..| .+.++|
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECC
Confidence 56899999999999999999999998653 1235 566664
No 455
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.95 E-value=0.15 Score=62.25 Aligned_cols=34 Identities=21% Similarity=0.082 Sum_probs=28.2
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
-|+.+.+-+++|+++.|.|++|+|||||..-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 3555555689999999999999999999877764
No 456
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.95 E-value=0.012 Score=66.32 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=28.7
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNG 188 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 188 (1326)
..|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3578999999999999999999998763 24455554
No 457
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.91 E-value=0.012 Score=61.25 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=20.6
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 458
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.91 E-value=0.0079 Score=69.48 Aligned_cols=33 Identities=36% Similarity=0.639 Sum_probs=31.7
Q ss_pred ceeEEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 142 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999875
No 459
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.91 E-value=0.033 Score=60.11 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=37.0
Q ss_pred CCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEe---------cChhhHHhhCCeEEEec
Q 046656 313 PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLL---------QPAPETYDLFDDIILLS 371 (1326)
Q Consensus 313 ~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~---------q~~~~~~~~~D~vilL~ 371 (1326)
+++++++||.-. |+.. +++.++.++. .+.++|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 579999999964 6643 4555566655 3455555443 45678889999999875
No 460
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.84 E-value=0.013 Score=59.86 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=21.3
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 461
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.83 E-value=0.0093 Score=63.33 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 462
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.76 E-value=0.13 Score=59.89 Aligned_cols=27 Identities=41% Similarity=0.632 Sum_probs=23.7
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++..-++|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355678999999999999999999875
No 463
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.71 E-value=0.0039 Score=71.71 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=33.2
Q ss_pred EeeecceeEEeCCeE--EEEeccCCCChhhHHhhhcCCC
Q 046656 836 VLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.+++++++.+++|+. ++|+|++||||||+.++|++..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 378888888999988 9999999999999999999853
No 464
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.68 E-value=0.014 Score=66.28 Aligned_cols=30 Identities=37% Similarity=0.605 Sum_probs=26.9
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.++++.-++|.||||+|||||.++|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 357888999999999999999999999864
No 465
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.68 E-value=0.013 Score=60.82 Aligned_cols=38 Identities=34% Similarity=0.326 Sum_probs=28.5
Q ss_pred eEEEEeccCCCChhhHHhhhcCCCC-CCeeEEEEEEcCc
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGRKT-GGYISGNITISGY 886 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~ 886 (1326)
.+++|+|+||||||||++.|.+... .+...|.|..+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999998532 1233567776654
No 466
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.65 E-value=0.012 Score=64.05 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=22.0
Q ss_pred eEEEEecCCCCChhHHHHHHhccc
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
No 467
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.64 E-value=0.014 Score=61.15 Aligned_cols=27 Identities=41% Similarity=0.573 Sum_probs=24.2
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998765
No 468
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.62 E-value=0.16 Score=58.14 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=23.6
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..|..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3455678899999999999999999754
No 469
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.58 E-value=0.014 Score=64.64 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.4
Q ss_pred eEEEEecCCCCChhHHHHHHhcccC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.49 E-value=0.014 Score=63.78 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=25.0
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.-++|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999999865
No 471
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.47 E-value=0.017 Score=60.27 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.4
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998654
No 472
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.43 E-value=0.015 Score=60.75 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=25.6
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
...+|.++.|+|++||||||+.+.|++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999999754
No 473
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.37 E-value=0.077 Score=63.57 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=32.5
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
..-|+.+.+-+.+|+++.|.|+||+|||||+.-++...
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 44577777779999999999999999999998887653
No 474
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.33 E-value=0.0056 Score=69.40 Aligned_cols=46 Identities=26% Similarity=0.160 Sum_probs=34.7
Q ss_pred ec-ceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 839 NG-VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 839 ~~-vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
++ +++..+ |++++++|++|+||||++..|++... ...|++.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecC
Confidence 45 777766 99999999999999999999998643 123556655443
No 475
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.27 E-value=0.02 Score=60.63 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.6
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999876
No 476
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.23 E-value=0.02 Score=59.62 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 477
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.18 E-value=0.02 Score=60.81 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=25.1
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999988753
No 478
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.15 E-value=0.02 Score=59.53 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 479
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.12 E-value=0.022 Score=59.24 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCChhHHHHHHhccc
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46688999999999999999999865
No 480
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.11 E-value=0.022 Score=58.28 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=18.3
Q ss_pred EEEEecCCCCChhHHHHHH
Q 046656 152 MTLLLGPPSSGKTTLLLAL 170 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L 170 (1326)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 481
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.10 E-value=0.015 Score=61.58 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.0
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..+++|+|++||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998753
No 482
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.09 E-value=0.074 Score=62.02 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.5
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
..+..++|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998763
No 483
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.06 E-value=0.025 Score=58.38 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.5
Q ss_pred eEEEEecCCCCChhHHHHHHhc
Q 046656 151 RMTLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G 172 (1326)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 484
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.06 E-value=0.091 Score=57.76 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhc
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 924 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~ 924 (1326)
+++..-+.|.||+|+|||||.+.++.... .--+.+++.+.....
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~~~~~~-------------------------------- 79 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAEFVEVI-------------------------------- 79 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTTTSSSS--------------------------------
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHHHHhhc--------------------------------
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC-----------C
Q 046656 925 RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL-----------D 993 (1326)
Q Consensus 925 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL-----------D 993 (1326)
.-.+..+.+-.+..+.-..|.+||+||.-.=. +
T Consensus 80 ------------------------------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~ 123 (262)
T 2qz4_A 80 ------------------------------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123 (262)
T ss_dssp ------------------------------------TTHHHHHHHHHHHHHHHTCSEEEEEECC----------------
T ss_pred ------------------------------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccc
Q ss_pred HHHHHHHHHHHHHHHh----cCCEEEEEecCCc---HHHHH--HhceeeEEe
Q 046656 994 ARAAAIVMRTVKNTVE----TGRTVVCTIHQPS---IDIFE--AFDELFLMK 1036 (1326)
Q Consensus 994 ~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~~~--~~D~v~~l~ 1036 (1326)
......+.+++..+.. .+..+|.+++.+. ..+.. .||+.+.+.
T Consensus 124 ~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 124 TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp ---CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
No 485
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.05 E-value=0.02 Score=59.57 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999985
No 486
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.03 E-value=0.019 Score=60.26 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.3
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987764
No 487
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.01 E-value=0.021 Score=60.37 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.9
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 579999999999999999999764
No 488
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.00 E-value=0.018 Score=74.38 Aligned_cols=32 Identities=41% Similarity=0.569 Sum_probs=28.8
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
+.+++|+-++|.||||+|||||+++|+|++..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999998753
No 489
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.98 E-value=0.02 Score=59.20 Aligned_cols=24 Identities=46% Similarity=0.535 Sum_probs=21.5
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+.|+|+|||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998753
No 490
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.97 E-value=0.0094 Score=65.92 Aligned_cols=45 Identities=31% Similarity=0.386 Sum_probs=33.2
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCc
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY 886 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 886 (1326)
++++.+ ..+++.++.|+|++||||||+.+.|+..... +.+.+++-
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D 66 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGD 66 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecH
Confidence 334443 4677899999999999999999999975431 34566664
No 491
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.96 E-value=0.022 Score=58.64 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=23.1
Q ss_pred eEEEEecCCCCChhHHHHHHhcccCC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999998753
No 492
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.90 E-value=0.023 Score=58.99 Aligned_cols=26 Identities=42% Similarity=0.367 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCChhHHHHHHhccc
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.+..+.|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 56788999999999999999999664
No 493
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.79 E-value=0.46 Score=55.16 Aligned_cols=120 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhc
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 924 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~ 924 (1326)
+++|+++.|.|++|+|||||...++... ......+.|+.-+....
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~------------------~~~g~~vlyi~~E~s~~----------------- 115 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQA------------------QKAGGTCAFIDAEHALD----------------- 115 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH------------------HHTTCCEEEEESSCCCC-----------------
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHH------------------HHCCCeEEEEECCCChh-----------------
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCC----------
Q 046656 925 RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL---------- 992 (1326)
Q Consensus 925 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPtsgL---------- 992 (1326)
....+.+++..-.-..... -+. .+.+.+++.++ .+++++++|..++=.
T Consensus 116 -------------~~~a~~~g~d~~~l~i~~~-----~~~--e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~g 175 (366)
T 1xp8_A 116 -------------PVYARALGVNTDELLVSQP-----DNG--EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMG 175 (366)
T ss_dssp -------------HHHHHHTTCCGGGCEEECC-----SSH--HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC-----
T ss_pred -------------HHHHHHcCCCHHHceeecC-----CcH--HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccc
Q ss_pred CH---HHHHHHHHHHHHH----HhcCCEEEEEec
Q 046656 993 DA---RAAAIVMRTVKNT----VETGRTVVCTIH 1019 (1326)
Q Consensus 993 D~---~~~~~i~~~l~~~----~~~g~tvi~~~H 1019 (1326)
|. ..++.+.+.++++ .+.+++||++.|
T Consensus 176 d~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 176 DSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
No 494
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.74 E-value=0.029 Score=59.76 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.4
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998765
No 495
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.73 E-value=0.027 Score=59.09 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.0
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 496
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.72 E-value=0.0069 Score=70.08 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=33.5
Q ss_pred eEeeecceeEEeCCeE--EEEeccCCCChhhHHhhhcCCC
Q 046656 835 LVLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3477888888899988 9999999999999999999854
No 497
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.70 E-value=0.031 Score=59.95 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=21.9
Q ss_pred CceEEEEecCCCCChhHHHHHHhc
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G 172 (1326)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 498
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.66 E-value=0.03 Score=57.81 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
|.++.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999754
No 499
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.66 E-value=0.026 Score=61.59 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.9
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999964
No 500
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.59 E-value=0.029 Score=57.38 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
Done!