Query 046658
Match_columns 413
No_of_seqs 162 out of 1814
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.7 5.1E-19 1.1E-23 154.6 -6.3 214 5-244 98-322 (419)
2 KOG4341 F-box protein containi 99.6 1E-17 2.2E-22 152.8 -8.0 345 7-388 74-441 (483)
3 smart00579 FBD domain in FBox 99.4 4.6E-13 9.9E-18 96.2 8.4 72 341-413 1-72 (72)
4 PF08387 FBD: FBD; InterPro: 99.2 1.1E-11 2.4E-16 81.8 5.1 51 332-382 1-51 (51)
5 PF12937 F-box-like: F-box-lik 98.7 1.6E-08 3.4E-13 65.8 2.8 36 5-40 1-36 (47)
6 PLN00113 leucine-rich repeat r 98.4 3.8E-07 8.3E-12 98.9 7.3 147 108-263 93-243 (968)
7 KOG1909 Ran GTPase-activating 98.3 7E-08 1.5E-12 87.3 -2.7 94 82-193 32-132 (382)
8 PLN00113 leucine-rich repeat r 98.2 1.7E-06 3.6E-11 93.9 6.5 148 108-263 188-339 (968)
9 PF00646 F-box: F-box domain; 98.2 3.6E-07 7.9E-12 59.7 0.7 38 5-42 3-40 (48)
10 KOG3207 Beta-tubulin folding c 98.2 2E-07 4.3E-12 86.8 -1.2 134 108-247 146-283 (505)
11 cd00116 LRR_RI Leucine-rich re 98.1 2.9E-07 6.2E-12 86.6 -2.5 65 129-193 77-149 (319)
12 smart00256 FBOX A Receptor for 98.0 2.1E-06 4.5E-11 53.9 1.6 34 8-41 1-34 (41)
13 cd00116 LRR_RI Leucine-rich re 98.0 2.2E-06 4.7E-11 80.6 1.7 244 108-386 23-291 (319)
14 KOG4194 Membrane glycoprotein 97.8 6.9E-06 1.5E-10 79.5 1.7 27 346-372 440-468 (873)
15 KOG2120 SCF ubiquitin ligase, 97.8 2.3E-06 5E-11 76.1 -1.5 153 82-244 212-372 (419)
16 PLN03210 Resistant to P. syrin 97.8 8.3E-05 1.8E-09 81.8 10.0 105 132-245 610-714 (1153)
17 PLN03210 Resistant to P. syrin 97.8 8.5E-05 1.8E-09 81.7 9.1 81 108-193 634-716 (1153)
18 KOG3207 Beta-tubulin folding c 97.7 3.1E-06 6.7E-11 79.0 -2.5 179 132-320 120-310 (505)
19 PF07723 LRR_2: Leucine Rich R 97.4 0.0002 4.4E-09 39.6 2.9 25 157-181 1-26 (26)
20 KOG4341 F-box protein containi 97.3 4.6E-05 9.9E-10 71.0 -1.0 160 132-319 267-434 (483)
21 KOG1947 Leucine rich repeat pr 97.2 1.2E-05 2.5E-10 80.1 -6.1 189 107-313 187-389 (482)
22 PF14580 LRR_9: Leucine-rich r 97.2 7.5E-05 1.6E-09 63.0 -0.7 124 109-244 20-149 (175)
23 KOG3665 ZYG-1-like serine/thre 97.1 6.7E-05 1.5E-09 77.0 -1.3 157 133-319 122-283 (699)
24 KOG0618 Serine/threonine phosp 97.1 3.6E-05 7.9E-10 78.4 -3.3 139 97-248 255-396 (1081)
25 KOG0444 Cytoskeletal regulator 97.0 5.4E-06 1.2E-10 80.8 -9.7 82 109-192 33-114 (1255)
26 KOG4194 Membrane glycoprotein 97.0 0.00044 9.6E-09 67.4 3.1 107 133-247 173-281 (873)
27 KOG1947 Leucine rich repeat pr 96.9 5.1E-05 1.1E-09 75.5 -4.8 168 131-321 186-372 (482)
28 PF13855 LRR_8: Leucine rich r 96.9 0.00063 1.4E-08 46.7 2.0 59 133-192 1-60 (61)
29 KOG1909 Ran GTPase-activating 96.9 0.00027 5.8E-09 64.6 0.1 44 281-324 236-283 (382)
30 PF14580 LRR_9: Leucine-rich r 96.8 6.2E-05 1.3E-09 63.6 -4.0 122 130-261 16-145 (175)
31 PRK15370 E3 ubiquitin-protein 96.8 0.0026 5.7E-08 66.2 6.7 93 108-214 178-270 (754)
32 KOG2982 Uncharacterized conser 96.8 0.00033 7.2E-09 62.7 -0.2 111 129-245 41-156 (418)
33 KOG2982 Uncharacterized conser 96.5 0.0017 3.7E-08 58.3 2.7 223 108-370 71-307 (418)
34 PRK15370 E3 ubiquitin-protein 96.2 0.005 1.1E-07 64.1 4.2 76 108-193 220-295 (754)
35 PRK15387 E3 ubiquitin-protein 96.1 0.019 4.2E-07 59.8 8.3 112 108-245 201-312 (788)
36 KOG0617 Ras suppressor protein 96.1 0.00029 6.3E-09 58.0 -4.0 70 122-193 45-114 (264)
37 PRK15387 E3 ubiquitin-protein 95.8 0.029 6.2E-07 58.6 7.6 53 108-168 222-274 (788)
38 PF13855 LRR_8: Leucine rich r 95.7 0.0094 2E-07 40.7 2.7 57 109-167 2-60 (61)
39 PF12799 LRR_4: Leucine Rich r 95.2 0.011 2.3E-07 37.5 1.4 35 134-168 2-36 (44)
40 KOG0444 Cytoskeletal regulator 95.2 0.00081 1.7E-08 66.2 -5.5 170 111-297 10-184 (1255)
41 KOG0281 Beta-TrCP (transducin 94.7 0.011 2.3E-07 53.9 0.5 37 2-38 72-112 (499)
42 KOG0618 Serine/threonine phosp 94.2 0.0048 1E-07 63.5 -2.9 65 177-250 426-491 (1081)
43 KOG3665 ZYG-1-like serine/thre 94.2 0.02 4.4E-07 59.1 1.5 132 106-247 120-262 (699)
44 KOG1259 Nischarin, modulator o 94.2 0.029 6.2E-07 50.7 2.1 70 122-193 171-249 (490)
45 KOG1644 U2-associated snRNP A' 93.5 0.17 3.6E-06 43.3 5.2 61 132-193 63-125 (233)
46 PF12799 LRR_4: Leucine Rich r 93.3 0.058 1.3E-06 34.1 1.8 36 156-193 1-36 (44)
47 PLN03150 hypothetical protein; 92.7 0.15 3.3E-06 52.5 4.9 78 135-214 420-498 (623)
48 PLN03215 ascorbic acid mannose 92.6 0.059 1.3E-06 51.0 1.5 37 5-41 4-41 (373)
49 KOG0617 Ras suppressor protein 92.6 0.009 1.9E-07 49.4 -3.4 83 109-193 57-139 (264)
50 KOG1644 U2-associated snRNP A' 92.4 0.37 8.1E-06 41.2 5.8 101 133-244 42-149 (233)
51 KOG2739 Leucine-rich acidic nu 92.3 0.04 8.7E-07 48.8 0.0 81 206-317 65-149 (260)
52 COG5238 RNA1 Ran GTPase-activa 92.0 0.1 2.2E-06 46.6 2.1 43 151-193 87-132 (388)
53 COG5238 RNA1 Ran GTPase-activa 90.8 0.03 6.4E-07 49.9 -2.3 209 82-320 32-281 (388)
54 KOG2997 F-box protein FBX9 [Ge 90.6 0.09 1.9E-06 47.7 0.5 34 5-38 107-145 (366)
55 KOG2739 Leucine-rich acidic nu 90.6 0.07 1.5E-06 47.3 -0.2 106 131-244 41-152 (260)
56 PRK15386 type III secretion pr 88.6 0.84 1.8E-05 44.0 5.4 69 108-190 52-121 (426)
57 PRK15386 type III secretion pr 88.0 1.1 2.3E-05 43.3 5.6 50 155-214 51-102 (426)
58 KOG0472 Leucine-rich repeat pr 87.4 0.028 6.1E-07 52.8 -5.1 176 108-324 362-541 (565)
59 KOG2123 Uncharacterized conser 87.3 0.028 6E-07 50.3 -5.0 58 132-191 40-98 (388)
60 KOG3864 Uncharacterized conser 86.6 0.091 2E-06 44.8 -2.1 63 151-214 120-184 (221)
61 smart00367 LRR_CC Leucine-rich 85.6 0.54 1.2E-05 25.7 1.4 23 155-177 1-24 (26)
62 KOG0274 Cdc4 and related F-box 84.7 0.34 7.3E-06 48.7 0.5 37 2-38 105-141 (537)
63 PLN03150 hypothetical protein; 84.2 1 2.2E-05 46.5 3.8 82 110-193 420-502 (623)
64 PF13516 LRR_6: Leucine Rich r 79.0 1.1 2.4E-05 23.8 1.0 21 155-175 1-21 (24)
65 KOG2123 Uncharacterized conser 77.1 0.25 5.3E-06 44.4 -3.0 83 108-193 41-129 (388)
66 PF13013 F-box-like_2: F-box-l 75.2 1.4 3.1E-05 33.8 1.0 29 5-33 22-50 (109)
67 KOG3864 Uncharacterized conser 73.9 0.79 1.7E-05 39.3 -0.7 64 129-193 121-188 (221)
68 KOG4658 Apoptotic ATPase [Sign 72.8 1.6 3.4E-05 46.8 1.0 44 123-166 585-628 (889)
69 KOG1859 Leucine-rich repeat pr 71.4 8.8 0.00019 39.7 5.7 64 79-145 54-121 (1096)
70 KOG0472 Leucine-rich repeat pr 71.1 2.6 5.6E-05 40.2 1.9 109 127-247 429-540 (565)
71 PF13504 LRR_7: Leucine rich r 69.6 3.6 7.9E-05 19.9 1.4 11 134-144 2-12 (17)
72 KOG4658 Apoptotic ATPase [Sign 69.5 9.2 0.0002 41.2 5.8 80 133-214 523-603 (889)
73 KOG1259 Nischarin, modulator o 67.5 0.93 2E-05 41.3 -1.7 99 108-214 307-407 (490)
74 PF00560 LRR_1: Leucine Rich R 60.1 6.6 0.00014 20.3 1.4 16 134-149 1-16 (22)
75 KOG3926 F-box proteins [Amino 56.4 3 6.5E-05 37.2 -0.5 48 5-52 202-256 (332)
76 KOG0531 Protein phosphatase 1, 51.9 5.7 0.00012 38.8 0.5 59 131-193 93-152 (414)
77 smart00368 LRR_RI Leucine rich 47.9 14 0.0003 20.5 1.5 21 156-176 2-22 (28)
78 COG4886 Leucine-rich repeat (L 46.7 8.9 0.00019 37.0 1.0 103 132-245 115-219 (394)
79 COG4886 Leucine-rich repeat (L 45.9 7.6 0.00016 37.5 0.3 100 109-214 117-217 (394)
80 KOG4579 Leucine-rich repeat (L 45.6 4.9 0.00011 32.5 -0.8 59 133-193 53-112 (177)
81 KOG0531 Protein phosphatase 1, 45.1 7.3 0.00016 38.1 0.1 60 129-193 114-174 (414)
82 PF01827 FTH: FTH domain; Int 40.8 1.5E+02 0.0032 23.4 7.3 117 65-188 2-124 (142)
83 KOG4579 Leucine-rich repeat (L 36.6 12 0.00026 30.4 0.1 61 108-168 51-112 (177)
84 KOG4237 Extracellular matrix p 35.3 42 0.00092 32.2 3.4 43 123-165 80-124 (498)
85 KOG4408 Putative Mg2+ and Co2+ 31.2 14 0.00031 34.1 -0.3 39 5-43 8-46 (386)
86 KOG4237 Extracellular matrix p 28.6 33 0.00072 32.9 1.6 21 362-382 477-497 (498)
87 KOG1859 Leucine-rich repeat pr 28.2 18 0.0004 37.5 -0.2 39 129-168 205-244 (1096)
88 KOG3763 mRNA export factor TAP 25.4 36 0.00079 34.0 1.3 60 131-192 216-281 (585)
89 PF13306 LRR_5: Leucine rich r 23.8 1E+02 0.0023 23.7 3.5 58 130-190 9-67 (129)
90 smart00369 LRR_TYP Leucine-ric 21.5 71 0.0015 16.9 1.5 17 133-149 2-18 (26)
91 smart00370 LRR Leucine-rich re 21.5 71 0.0015 16.9 1.5 17 133-149 2-18 (26)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.1e-19 Score=154.64 Aligned_cols=214 Identities=19% Similarity=0.157 Sum_probs=147.3
Q ss_pred CCCCChHHHHHHhcCCCcccchhhcccchhhHHHHhccC---eeeeecCCCCCCCCccccccchHHHHHHHHHhccCCCC
Q 046658 5 ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLA---NLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHPGN 81 (413)
Q Consensus 5 is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~~~~---~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~ 81 (413)
+..||||++..|||.|+.+|..+.+.|||||.++.+.-. .+++....+.+ .+...+.++ |
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p--------------~~l~~l~~r-g-- 160 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP--------------DVLGRLLSR-G-- 160 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh--------------hHHHHHHhC-C--
Confidence 467999999999999999999999999999997654333 23333333321 122223222 2
Q ss_pred cceEEeeecCCCCcccHHHHHHHH--HhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-CcccCCcc
Q 046658 82 IDSFCLHCSRPIDLSSVNFWLSSA--LMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTM 158 (413)
Q Consensus 82 l~~l~l~~~~~~~~~~~~~wl~~a--~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L 158 (413)
|..|++.-....++ +...++ ++..+++++++...-..-.+...+..|..|+.|+|.|....+.-. ..+.-.+|
T Consensus 161 V~v~Rlar~~~~~p----rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L 236 (419)
T KOG2120|consen 161 VIVFRLARSFMDQP----RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNL 236 (419)
T ss_pred eEEEEcchhhhcCc----hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccc
Confidence 55555553222222 222222 345799999997665444555666779999999999987655321 34567889
Q ss_pred cEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec-CCCCcceEEEecCccceeEEEeeecCCCCCCCC---cceEEEe
Q 046658 159 KVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD-ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEI---DHTVMLK 233 (413)
Q Consensus 159 ~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~-~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~---~~~~~~~ 233 (413)
+.|+|+.+.. +..++.-++++|..|.+|.+.+|.. .+.+...+...+++|+.|+++ +|...-+ ...+.-.
T Consensus 237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls-----G~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 237 VRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS-----GYRRNLQKSHLSTLVRR 311 (419)
T ss_pred eeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh-----hhHhhhhhhHHHHHHHh
Confidence 9999999987 9999999999999999999999987 333433233346899999999 8765421 1223446
Q ss_pred cCceeEEEEee
Q 046658 234 APNLQCLHIIA 244 (413)
Q Consensus 234 ~P~L~~L~~~~ 244 (413)
+|+|..|++++
T Consensus 312 cp~l~~LDLSD 322 (419)
T KOG2120|consen 312 CPNLVHLDLSD 322 (419)
T ss_pred CCceeeecccc
Confidence 78888888887
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.58 E-value=1e-17 Score=152.84 Aligned_cols=345 Identities=17% Similarity=0.178 Sum_probs=221.2
Q ss_pred CCChHHHHHHhcCCCcccchhhcccchhhHHH------HhccCeeeeecCCCCCCCCccccccchHHHHHHHHHhccCCC
Q 046658 7 DLPDAILGRIVSFLPTKNTVATSVLSRRWKHV------WTSLANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHPG 80 (413)
Q Consensus 7 ~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l------~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~ 80 (413)
.||.+++.+|||+|+++..++++.+|+-|..+ |..+.-.+|..+. + ..|-..+..|.|.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv----------~-----g~VV~~~~~Rcgg 138 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV----------D-----GGVVENMISRCGG 138 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC----------C-----CcceehHhhhhcc
Confidence 49999999999999999999999999999975 4444433332211 1 2233444556667
Q ss_pred CcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcc-eeeecCccccccccccEEEeCCccccc-c--CCCcccCC
Q 046658 81 NIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDSDCVIN-A--PCVGTCFP 156 (413)
Q Consensus 81 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~-~--~~~~~~~~ 156 (413)
.++.++++.........+...... ++++++|.+..+.. +.-.+-.....|+.|++|.|.+|.... . ...+.+||
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~--CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASN--CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhh--CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 799999998876655545544444 67898887775432 111122222358899999998874332 1 11466899
Q ss_pred cccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeecCCCCcce--EEEecCccceeEEEeeecCCCCCCCCcceEE--
Q 046658 157 TMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFDADDSRTN--FIIASSTLKHFTLTVVIDTDNHFSEIDHTVM-- 231 (413)
Q Consensus 157 ~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~--~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~-- 231 (413)
+|++|+++++.- .++.++.+..+|..|+++.+++|.. ...+.. ....++-+.++++. .|...++...+.
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e-~~le~l~~~~~~~~~i~~lnl~-----~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE-LELEALLKAAAYCLEILKLNLQ-----HCNQLTDEDLWLIA 290 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc-ccHHHHHHHhccChHhhccchh-----hhccccchHHHHHh
Confidence 999999999987 7788999999999999998888877 222221 22344567777766 775544322222
Q ss_pred EecCceeEEEEeecccce----e-eeecCCCceEEEEEeecceeEEEecccCcccC-CCCCCeeEEEEEeCCCC-hhhHH
Q 046658 232 LKAPNLQCLHIIADRLGS----Y-VLEEMHCLHEAVVHISYAEWSQAVDQCYDNFC-PSFSELTFLEVKLAGSG-WRVLP 304 (413)
Q Consensus 232 ~~~P~L~~L~~~~~~~~~----~-~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~-p~~~~L~~L~l~~~~~~-~~~l~ 304 (413)
-.+..|+.|.++++.... + ...+.++|+.+.+.-+. .++...-.++ ..+..|+.|.+..+... ...+.
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~-----~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ-----QFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc-----hhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence 235667888888754421 1 12456677666553211 0110000111 14667999999998876 44589
Q ss_pred HHHhcCCCCceEEeccc-cceecccccCCccccCccCcccccceeEEEEEeecCCHhHHHHHHHHHhcCCCCceEEEEee
Q 046658 305 IILHSSPNLERLLVDKE-CWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCK 383 (413)
Q Consensus 305 ~ll~~~p~L~~L~i~~~-~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~~~l~~~ll~~a~~Le~l~i~~~ 383 (413)
++-.+||.|+.|.++.. ..++.+ ........|...+|+.+++.+-..... +..+ .+.+.++||++.++..
T Consensus 366 sls~~C~~lr~lslshce~itD~g------i~~l~~~~c~~~~l~~lEL~n~p~i~d--~~Le-~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEG------IRHLSSSSCSLEGLEVLELDNCPLITD--ATLE-HLSICRNLERIELIDC 436 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhh------hhhhhhccccccccceeeecCCCCchH--HHHH-HHhhCcccceeeeech
Confidence 99999999999999841 122221 111223456677888888887765422 2233 4567889999888877
Q ss_pred cccch
Q 046658 384 ALIFK 388 (413)
Q Consensus 384 ~~~~~ 388 (413)
++..+
T Consensus 437 q~vtk 441 (483)
T KOG4341|consen 437 QDVTK 441 (483)
T ss_pred hhhhh
Confidence 76655
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.45 E-value=4.6e-13 Score=96.24 Aligned_cols=72 Identities=25% Similarity=0.530 Sum_probs=64.5
Q ss_pred cccccceeEEEEEeecCCHhHHHHHHHHHhcCCCCceEEEEeecccchhhHHHHHHHHhcCcCCCCCceEEeC
Q 046658 341 QCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQRLSHLKRGCDGSELLLL 413 (413)
Q Consensus 341 ~c~~~~L~~v~i~~~~~~~~~~~l~~~ll~~a~~Le~l~i~~~~~~~~~~~~~~~~~l~~~~r~s~~~~~~~~ 413 (413)
+|+.++|++|+|.+|.|...|+++++|++++|+.||+|+|........ ...++.++|..++|||++|+|.|.
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~-~~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDD-EKLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCcc-HHHHHHHHHHhCcCCCCceEEEeC
Confidence 377789999999999999999999999999999999999999776554 446788999999999999999874
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.25 E-value=1.1e-11 Score=81.79 Aligned_cols=51 Identities=37% Similarity=0.692 Sum_probs=48.1
Q ss_pred CccccCccCcccccceeEEEEEeecCCHhHHHHHHHHHhcCCCCceEEEEe
Q 046658 332 GWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINC 382 (413)
Q Consensus 332 ~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~~~l~~~ll~~a~~Le~l~i~~ 382 (413)
.|.++..+++|+.+||+.|+|.+|.|...|+++++|+++||+.||+|+|..
T Consensus 1 ~W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 1 FWIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred CCCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 487888899999999999999999999999999999999999999999963
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.66 E-value=1.6e-08 Score=65.83 Aligned_cols=36 Identities=39% Similarity=0.723 Sum_probs=31.7
Q ss_pred CCCCChHHHHHHhcCCCcccchhhcccchhhHHHHh
Q 046658 5 ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWT 40 (413)
Q Consensus 5 is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~ 40 (413)
|+.||+|++.+||++|+.+|.++++.|||+|+.+..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 678999999999999999999999999999998654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.42 E-value=3.8e-07 Score=98.88 Aligned_cols=147 Identities=14% Similarity=0.195 Sum_probs=79.3
Q ss_pred CCcEEEEEEECcceeeecCcccc-ccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIY-TSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
..++.|+++...- ...+|..++ .+++|++|+|++|...... ....+++|++|+|.++.+... +...+..++.|+.|
T Consensus 93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L 169 (968)
T PLN00113 93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSI-PRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCcccccc-CccccCCCCEEECcCCccccc-CChHHhcCCCCCEE
Confidence 5677777764432 225666655 6777888888777554322 234577777777777765321 22334567777777
Q ss_pred EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc---eeeeecCCCceEEEE
Q 046658 187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG---SYVLEEMHCLHEAVV 263 (413)
Q Consensus 187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i 263 (413)
++.+|........ .....++|+.|.+. +|.............++|+.|++.++... ...+.++++|+.+++
T Consensus 170 ~L~~n~l~~~~p~-~~~~l~~L~~L~L~-----~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 170 DLGGNVLVGKIPN-SLTNLTSLEFLTLA-----SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred ECccCcccccCCh-hhhhCcCCCeeecc-----CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 7777654111111 11234567777776 65433211112224556666666654331 223455566666555
No 7
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.25 E-value=7e-08 Score=87.32 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=59.4
Q ss_pred cceEEeeecCCCCcccHHHHHHHHHhC--CcEEEEEE--ECcceeeecCccccccccccEEEeCCccccccCCCcccCCc
Q 046658 82 IDSFCLHCSRPIDLSSVNFWLSSALMQ--SVRELQLY--LGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPT 157 (413)
Q Consensus 82 l~~l~l~~~~~~~~~~~~~wl~~a~~~--~v~~L~l~--~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 157 (413)
+..+.+. ...-+....+|+....+. .+++..++ +..+....+|..+-.. .....++|+
T Consensus 32 ~~~l~ls--gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l----------------~~aL~~~~~ 93 (382)
T KOG1909|consen 32 LTKLDLS--GNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML----------------SKALLGCPK 93 (382)
T ss_pred eEEEecc--CCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH----------------HHHHhcCCc
Confidence 5555554 344556788998877653 44544444 1222233333321100 003456778
Q ss_pred ccEEEeeeeEe---ChhhHHHHhccCCccceEEEEeeec
Q 046658 158 MKVLHMQLQNL---DNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 158 L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
|++|+|++..+ +...++.++++|..|++|.|.+|..
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 88888888887 4456889999999999999999987
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.22 E-value=1.7e-06 Score=93.95 Aligned_cols=148 Identities=17% Similarity=0.155 Sum_probs=88.3
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccc-cCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVIN-APCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
.+++.|++..+.- ...+|..+..+++|++|+|.+|.... .|.....+++|++|+|.++.+... +...+..++.|+.|
T Consensus 188 ~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L 265 (968)
T PLN00113 188 TSLEFLTLASNQL-VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYL 265 (968)
T ss_pred cCCCeeeccCCCC-cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc-cChhHhCCCCCCEE
Confidence 5778888875432 23467777778888888888876543 343566788888888887766322 33345667888888
Q ss_pred EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc---eeeeecCCCceEEEE
Q 046658 187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG---SYVLEEMHCLHEAVV 263 (413)
Q Consensus 187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i 263 (413)
.+.+|...+.... .....++|+.|.+. +|.............++|+.|++.++... ...+.++++|+.+.+
T Consensus 266 ~L~~n~l~~~~p~-~l~~l~~L~~L~Ls-----~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 266 FLYQNKLSGPIPP-SIFSLQKLISLDLS-----DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred ECcCCeeeccCch-hHhhccCcCEEECc-----CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 8887765111111 11223567777777 66543222222234566777776664332 223455666666655
No 9
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.21 E-value=3.6e-07 Score=59.68 Aligned_cols=38 Identities=42% Similarity=0.746 Sum_probs=31.6
Q ss_pred CCCCChHHHHHHhcCCCcccchhhcccchhhHHHHhcc
Q 046658 5 ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSL 42 (413)
Q Consensus 5 is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~~~ 42 (413)
|++||+|++.+||++|+.+|.++++.|||+|+.+....
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 56899999999999999999999999999999876543
No 10
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2e-07 Score=86.75 Aligned_cols=134 Identities=21% Similarity=0.194 Sum_probs=87.4
Q ss_pred CCcEEEEEEECc-ceeeecCccccccccccEEEeCCccccccCC--CcccCCcccEEEeeeeEeChhhHHHHhccCCccc
Q 046658 108 QSVRELQLYLGQ-QNRVQLLETIYTSTTLEVLKLDSDCVINAPC--VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLE 184 (413)
Q Consensus 108 ~~v~~L~l~~~~-~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 184 (413)
.++++|+++..- .....+-..+-..|+|+.|+|+.+....+-. ....+++||+|.|.+|.++..++.+++..||.|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 466666666211 1122222223345889999998876543321 3457899999999999999999999999999999
Q ss_pred eEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCc-ceEEEecCceeEEEEeeccc
Q 046658 185 ELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEID-HTVMLKAPNLQCLHIIADRL 247 (413)
Q Consensus 185 ~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~-~~~~~~~P~L~~L~~~~~~~ 247 (413)
.|.++.+.. --....-.-...+|++|++. +....+.. .......|+|..|.++.+..
T Consensus 226 ~L~L~~N~~-~~~~~~~~~i~~~L~~LdLs-----~N~li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 226 VLYLEANEI-ILIKATSTKILQTLQELDLS-----NNNLIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred Hhhhhcccc-cceecchhhhhhHHhhcccc-----CCcccccccccccccccchhhhhccccCc
Confidence 999999854 10111001123579999999 76654322 23445678888887777533
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.09 E-value=2.9e-07 Score=86.55 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=31.9
Q ss_pred ccccccccEEEeCCcccccc-CCCcccC---CcccEEEeeeeEeChhhHHH---HhccC-CccceEEEEeeec
Q 046658 129 IYTSTTLEVLKLDSDCVINA-PCVGTCF---PTMKVLHMQLQNLDNSLTEK---MFSAC-PCLEELSVHAYFD 193 (413)
Q Consensus 129 ~~~~~~L~~L~L~~~~~~~~-~~~~~~~---~~L~~L~L~~~~~~~~~l~~---l~~~c-p~Le~L~l~~~~~ 193 (413)
+..+++|+.|++.+|..... +.....+ ++|++|++.++.+++..... .+..+ +.|++|.+.+|..
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 33455666666666544311 1111122 33666666666664333322 23334 6666666666654
No 12
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.04 E-value=2.1e-06 Score=53.88 Aligned_cols=34 Identities=44% Similarity=0.732 Sum_probs=31.6
Q ss_pred CChHHHHHHhcCCCcccchhhcccchhhHHHHhc
Q 046658 8 LPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTS 41 (413)
Q Consensus 8 LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~~ 41 (413)
||+|++.+||++|+.+|.++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987643
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.00 E-value=2.2e-06 Score=80.57 Aligned_cols=244 Identities=14% Similarity=0.098 Sum_probs=123.3
Q ss_pred CCcEEEEEEECcc---eeeecCccccccccccEEEeCCccccccC-------CCcccCCcccEEEeeeeEeC---hhhHH
Q 046658 108 QSVRELQLYLGQQ---NRVQLLETIYTSTTLEVLKLDSDCVINAP-------CVGTCFPTMKVLHMQLQNLD---NSLTE 174 (413)
Q Consensus 108 ~~v~~L~l~~~~~---~~~~lp~~~~~~~~L~~L~L~~~~~~~~~-------~~~~~~~~L~~L~L~~~~~~---~~~l~ 174 (413)
.+++++.+....- ....++..+...++|++|.+.++.....+ .....+++|++|++.++.+. ...+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 3477777775432 22345555556677888888776433101 02334668888888877763 23344
Q ss_pred HHhccCCccceEEEEeeecC-CCCcce--EEEec-CccceeEEEeeecCCCCCCCCc----ceEEEecCceeEEEEeecc
Q 046658 175 KMFSACPCLEELSVHAYFDA-DDSRTN--FIIAS-STLKHFTLTVVIDTDNHFSEID----HTVMLKAPNLQCLHIIADR 246 (413)
Q Consensus 175 ~l~~~cp~Le~L~l~~~~~~-~~~~~~--~~i~~-~~L~~L~i~~~~~~~~~~~~~~----~~~~~~~P~L~~L~~~~~~ 246 (413)
.+... |.|++|.+.+|... .+.... ..... ++|+.|.+. +|...... .......++|++|++.++.
T Consensus 103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~-----~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG-----RNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC-----CCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 44444 66888888877661 111110 00122 677777777 66543110 0011123456666655532
Q ss_pred cceeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCC---hhhHHHHHhcCCCCceEEeccccc
Q 046658 247 LGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKECW 323 (413)
Q Consensus 247 ~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~i~~~~~ 323 (413)
.....+ +.+ ...++.+++|++|.+..+... ...+...+..+|+|+.|.+.....
T Consensus 177 l~~~~~---~~l--------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 177 IGDAGI---RAL--------------------AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred CchHHH---HHH--------------------HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 210000 000 001234457888888877543 344666677788888888877332
Q ss_pred eecccccCCccccCccCcccccceeEEEEEeec-CCHhHHHHHHHHHhcCCCCceEEEEeeccc
Q 046658 324 FEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQ-GDEDEQRVIEYFLQQCKCLEVMIINCKALI 386 (413)
Q Consensus 324 ~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~-~~~~~~~l~~~ll~~a~~Le~l~i~~~~~~ 386 (413)
+..+.... . ..... ....|+.+.+.+.. ...+...++++ +.+.+.|+.+.+..+.-.
T Consensus 234 ~~~~~~~l--~--~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 234 TDAGAAAL--A--SALLS-PNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFG 291 (319)
T ss_pred chHHHHHH--H--HHHhc-cCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCc
Confidence 21110000 0 00000 12567777776544 22233444454 344477888777765544
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.82 E-value=6.9e-06 Score=79.46 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=19.0
Q ss_pred ceeEEEEE--eecCCHhHHHHHHHHHhcC
Q 046658 346 RVKKIEII--RVQGDEDEQRVIEYFLQQC 372 (413)
Q Consensus 346 ~L~~v~i~--~~~~~~~~~~l~~~ll~~a 372 (413)
+||++.|. +|-++++-..+..++.++.
T Consensus 440 ~Lk~Lv~nSssflCDCql~Wl~qWl~~~~ 468 (873)
T KOG4194|consen 440 ELKELVMNSSSFLCDCQLKWLAQWLYRRK 468 (873)
T ss_pred hhhhhhhcccceEEeccHHHHHHHHHhcc
Confidence 68887775 4557777777777777654
No 15
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=2.3e-06 Score=76.12 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=103.3
Q ss_pred cceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcc-eeeecCccccccccccEEEeCCccccccCC---CcccCCc
Q 046658 82 IDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDSDCVINAPC---VGTCFPT 157 (413)
Q Consensus 82 l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~---~~~~~~~ 157 (413)
++.++++...-.| ++.. ..|-..+++++.++.+.+ ....+...+.+|+.|..|+|+.|....... ...--+.
T Consensus 212 Lk~lSlEg~~LdD--~I~~--~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 212 LKNLSLEGLRLDD--PIVN--TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred hhhccccccccCc--HHHH--HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 7777777543222 1222 223347899999997765 344455556789999999999985433211 2334678
Q ss_pred ccEEEeeeeEe--ChhhHHHHhccCCccceEEEEeeec-CCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEE-e
Q 046658 158 MKVLHMQLQNL--DNSLTEKMFSACPCLEELSVHAYFD-ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVML-K 233 (413)
Q Consensus 158 L~~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~~~~-~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~-~ 233 (413)
|+.|+|++++- ....+..+...||.|.+|+|++|.. .+++-. .....+.|++|.++ .|+.......+.+ +
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSls-----RCY~i~p~~~~~l~s 361 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLS-----RCYDIIPETLLELNS 361 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcchheeeehh-----hhcCCChHHeeeecc
Confidence 99999998865 7778999999999999999999987 222222 22355789999999 8886543223332 5
Q ss_pred cCceeEEEEee
Q 046658 234 APNLQCLHIIA 244 (413)
Q Consensus 234 ~P~L~~L~~~~ 244 (413)
.|.|.+|++.|
T Consensus 362 ~psl~yLdv~g 372 (419)
T KOG2120|consen 362 KPSLVYLDVFG 372 (419)
T ss_pred CcceEEEEecc
Confidence 67777777776
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.81 E-value=8.3e-05 Score=81.81 Aligned_cols=105 Identities=11% Similarity=0.022 Sum_probs=52.7
Q ss_pred cccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcccee
Q 046658 132 STTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHF 211 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L 211 (413)
..+|+.|++.++....++.....+++|+.|+|.++..- ..+.. ++.+++|+.|.+.+|..-..+.. ..-..++|+.|
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccch-hhhccCCCCEE
Confidence 45566666666554444434455667777777654320 00111 45567777777777755111111 11123566777
Q ss_pred EEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658 212 TLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 212 ~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~ 245 (413)
.+. +|....... ..+..++|+.|.+.++
T Consensus 687 ~L~-----~c~~L~~Lp-~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 687 DMS-----RCENLEILP-TGINLKSLYRLNLSGC 714 (1153)
T ss_pred eCC-----CCCCcCccC-CcCCCCCCCEEeCCCC
Confidence 776 665432111 1124556666666664
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.76 E-value=8.5e-05 Score=81.72 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=40.5
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccc-cccCCCcccCCcccEEEeeeeEe-ChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCV-INAPCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~ 185 (413)
.+++.++++.... ...+|. +..+++|++|.|.+|.. ..+|.....+++|+.|++.+|.. +. +..-+ +++.|+.
T Consensus 634 ~~Lk~L~Ls~~~~-l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~--Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 634 TGLRNIDLRGSKN-LKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI--LPTGI-NLKSLYR 708 (1153)
T ss_pred CCCCEEECCCCCC-cCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc--cCCcC-CCCCCCE
Confidence 4566666654321 223332 44456777777776643 23343445666677777766532 10 00000 3455556
Q ss_pred EEEEeeec
Q 046658 186 LSVHAYFD 193 (413)
Q Consensus 186 L~l~~~~~ 193 (413)
|.+.+|..
T Consensus 709 L~Lsgc~~ 716 (1153)
T PLN03210 709 LNLSGCSR 716 (1153)
T ss_pred EeCCCCCC
Confidence 65555543
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=3.1e-06 Score=79.00 Aligned_cols=179 Identities=19% Similarity=0.158 Sum_probs=106.3
Q ss_pred cccccEEEeCCccccccCC--CcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658 132 STTLEVLKLDSDCVINAPC--VGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL 208 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 208 (413)
.++|+...|.++..-..+. .+..||+++.|+|+..-+ ....+..++...|.||.|.++.+.......+...-..++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 4678888888876554442 566799999999998877 6777888888899999999988876111111122356789
Q ss_pred ceeEEEeeecCCCCCC-CCcceEEEecCceeEEEEeeccc-c--eeeeecCCCceEEEEEeecceeEEEecccCcccCCC
Q 046658 209 KHFTLTVVIDTDNHFS-EIDHTVMLKAPNLQCLHIIADRL-G--SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPS 284 (413)
Q Consensus 209 ~~L~i~~~~~~~~~~~-~~~~~~~~~~P~L~~L~~~~~~~-~--~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~ 284 (413)
|.|.+. +|..+ .....+....|+|+.|.+.++.. . ..+......|++++++-.. -+.+. .-.....
T Consensus 200 K~L~l~-----~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~---li~~~--~~~~~~~ 269 (505)
T KOG3207|consen 200 KQLVLN-----SCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN---LIDFD--QGYKVGT 269 (505)
T ss_pred heEEec-----cCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc---ccccc--ccccccc
Confidence 999999 88765 22334566788888888887421 1 2222233345555542100 00000 0011224
Q ss_pred CCCeeEEEEEeCCCC-----hhhHHHHHhcCCCCceEEecc
Q 046658 285 FSELTFLEVKLAGSG-----WRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 285 ~~~L~~L~l~~~~~~-----~~~l~~ll~~~p~L~~L~i~~ 320 (413)
|++|..|.+..++.. ..........+|.|+.|.+..
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence 556666666655432 112333455666666666554
No 19
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.39 E-value=0.0002 Score=39.57 Aligned_cols=25 Identities=32% Similarity=0.707 Sum_probs=22.9
Q ss_pred cccEEEeeeeEe-ChhhHHHHhccCC
Q 046658 157 TMKVLHMQLQNL-DNSLTEKMFSACP 181 (413)
Q Consensus 157 ~L~~L~L~~~~~-~~~~l~~l~~~cp 181 (413)
+||+|+|..+.+ ++..+++++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 6668999999998
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.26 E-value=4.6e-05 Score=71.03 Aligned_cols=160 Identities=14% Similarity=0.078 Sum_probs=87.8
Q ss_pred cccccEEEeCCccccccCC---CcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec--CCCCcceEEEec
Q 046658 132 STTLEVLKLDSDCVINAPC---VGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD--ADDSRTNFIIAS 205 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~--~~~~~~~~~i~~ 205 (413)
|..+..+++..|....-.. ....+..|+.|..+++.. ++..+..+..+|++|..|.+..|.. ...+.. +.-.+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~-l~rn~ 345 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM-LGRNC 345 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh-hhcCC
Confidence 4556666665663322111 234566777777777766 7777777777777777777777765 112222 33455
Q ss_pred CccceeEEEeeecCCCCCCCC--cceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcccCC
Q 046658 206 STLKHFTLTVVIDTDNHFSEI--DHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCP 283 (413)
Q Consensus 206 ~~L~~L~i~~~~~~~~~~~~~--~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p 283 (413)
+.|+.|.+. +|..... ......++|.|+.|.++-+.. ..+.+|.. +.. ..-
T Consensus 346 ~~Le~l~~e-----~~~~~~d~tL~sls~~C~~lr~lslshce~----------itD~gi~~--------l~~----~~c 398 (483)
T KOG4341|consen 346 PHLERLDLE-----ECGLITDGTLASLSRNCPRLRVLSLSHCEL----------ITDEGIRH--------LSS----SSC 398 (483)
T ss_pred hhhhhhccc-----ccceehhhhHhhhccCCchhccCChhhhhh----------hhhhhhhh--------hhh----ccc
Confidence 777777777 6654321 233455677777776553211 11101100 000 001
Q ss_pred CCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEec
Q 046658 284 SFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVD 319 (413)
Q Consensus 284 ~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~ 319 (413)
....|..|++.+++...+...+.+..||+||.+++.
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 233466666666666666666667777777775543
No 21
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.20 E-value=1.2e-05 Score=80.13 Aligned_cols=189 Identities=19% Similarity=0.164 Sum_probs=116.4
Q ss_pred hCCcEEEEEEECcc-eeeecCccccccccccEEEeCCc-ccccc-----CCCcccCCcccEEEeeeeE-eChhhHHHHhc
Q 046658 107 MQSVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDSD-CVINA-----PCVGTCFPTMKVLHMQLQN-LDNSLTEKMFS 178 (413)
Q Consensus 107 ~~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~-~~~~~-----~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~ 178 (413)
..+++++.+..... ....+-.....|+.|+.|.+.++ ..... ......+++|+.|++..+. +++..+..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 46777777775432 11124444567899999999873 22111 1144567899999999988 58899999999
Q ss_pred cCCccceEEEEeeec--CCCCcceEEEecCccceeEEEeeecCCCCCCCC--cceEEEecCceeEEEEeecccceeeeec
Q 046658 179 ACPCLEELSVHAYFD--ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEI--DHTVMLKAPNLQCLHIIADRLGSYVLEE 254 (413)
Q Consensus 179 ~cp~Le~L~l~~~~~--~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~--~~~~~~~~P~L~~L~~~~~~~~~~~~~~ 254 (413)
.||.||.|.+..|.. ..++.. +...+|.|++|.+. .|....+ ...+...+|+|+.|.+.....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~-----~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------- 333 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLS-----GCHGLTDSGLEALLKNCPNLRELKLLSLNG------- 333 (482)
T ss_pred hCCCcceEccCCCCccchhHHHH-HHHhcCcccEEeee-----cCccchHHHHHHHHHhCcchhhhhhhhcCC-------
Confidence 999999999888884 334444 44567889999999 8876421 122334577777766555211
Q ss_pred CCCceEEEEEeecceeEEEec--ccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCC
Q 046658 255 MHCLHEAVVHISYAEWSQAVD--QCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNL 313 (413)
Q Consensus 255 ~~~L~~~~i~~~~~~l~l~~~--~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L 313 (413)
++.++...+... .... .........+++++++.+..+.....+...++..||+|
T Consensus 334 c~~l~~~~l~~~-----~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 334 CPSLTDLSLSGL-----LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred CccHHHHHHHHh-----hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 223333222100 0000 00011123567888888888773355567788899988
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.15 E-value=7.5e-05 Score=63.05 Aligned_cols=124 Identities=23% Similarity=0.245 Sum_probs=43.2
Q ss_pred CcEEEEEEECcceeeecCcccc-ccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 109 SVRELQLYLGQQNRVQLLETIY-TSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 109 ~v~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
+.++|++....-... . .+. .+.+|+.|+|++|.+..++ +...+++|++|++++..++.-. +.+...||+|++|.
T Consensus 20 ~~~~L~L~~n~I~~I--e-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--E-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C-HHHHHH-TT--EEE
T ss_pred ccccccccccccccc--c-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEE
Confidence 456666665543221 1 222 3578999999999887777 6777899999999988883311 23335689999999
Q ss_pred EEeeecCCCCcceEE--EecCccceeEEEeeecCCCCCCCCc---ceEEEecCceeEEEEee
Q 046658 188 VHAYFDADDSRTNFI--IASSTLKHFTLTVVIDTDNHFSEID---HTVMLKAPNLQCLHIIA 244 (413)
Q Consensus 188 l~~~~~~~~~~~~~~--i~~~~L~~L~i~~~~~~~~~~~~~~---~~~~~~~P~L~~L~~~~ 244 (413)
+.++.. .++.. +. ...|+|+.|++. ++...... ..+....|+|+.|+...
T Consensus 95 L~~N~I-~~l~~-l~~L~~l~~L~~L~L~-----~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNKI-SDLNE-LEPLSSLPKLRVLSLE-----GNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS----SCCC-CGGGGG-TT--EEE-T-----T-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCcC-CChHH-hHHHHcCCCcceeecc-----CCcccchhhHHHHHHHHcChhheeCCEE
Confidence 988877 33332 11 135778888887 66544211 11222456666665554
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.15 E-value=6.7e-05 Score=77.01 Aligned_cols=157 Identities=20% Similarity=0.325 Sum_probs=102.2
Q ss_pred ccccEEEeCCccccc--cCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEe-cCcc
Q 046658 133 TTLEVLKLDSDCVIN--APC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIA-SSTL 208 (413)
Q Consensus 133 ~~L~~L~L~~~~~~~--~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~-~~~L 208 (413)
..|++|+++|..... .|. ...-||+|++|.+.+..+..+++..+..++|+|..|+++++.. .++.. ++ -++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl~G---IS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNLSG---ISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCcHH---HhccccH
Confidence 678889988853321 111 3456999999999999997677999999999999999999987 33322 22 2677
Q ss_pred ceeEEEeeecCCCCCCC-CcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCC
Q 046658 209 KHFTLTVVIDTDNHFSE-IDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSE 287 (413)
Q Consensus 209 ~~L~i~~~~~~~~~~~~-~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~ 287 (413)
+.|.+. +-.... ..-.-.+...+|+.|+++........ ...+.++. + -..+++
T Consensus 198 q~L~mr-----nLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----~ii~qYle------------c----~~~Lpe 251 (699)
T KOG3665|consen 198 QVLSMR-----NLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----KIIEQYLE------------C----GMVLPE 251 (699)
T ss_pred HHHhcc-----CCCCCchhhHHHHhcccCCCeeeccccccccch-----HHHHHHHH------------h----cccCcc
Confidence 777776 543322 11223445677888888873221110 11111110 0 113668
Q ss_pred eeEEEEEeCCCChhhHHHHHhcCCCCceEEec
Q 046658 288 LTFLEVKLAGSGWRVLPIILHSSPNLERLLVD 319 (413)
Q Consensus 288 L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~ 319 (413)
|+.|+.+....+...+..++..-|+|+.+..-
T Consensus 252 LrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 252 LRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred ccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 99998886655677788888889998888643
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.12 E-value=3.6e-05 Score=78.37 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=84.7
Q ss_pred cHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeC--hhhHH
Q 046658 97 SVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLD--NSLTE 174 (413)
Q Consensus 97 ~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~~l~ 174 (413)
.+..|+.. +.+++.+...... ...+|..++...+|++|+...|.....|+...++.+|++|+|....+. .+.+
T Consensus 255 ~lp~wi~~--~~nle~l~~n~N~--l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~- 329 (1081)
T KOG0618|consen 255 NLPEWIGA--CANLEALNANHNR--LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNF- 329 (1081)
T ss_pred cchHHHHh--cccceEecccchh--HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHH-
Confidence 34577776 4566666665443 356677777778888888887776666656778999999999988761 2222
Q ss_pred HHhccCCc-cceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc
Q 046658 175 KMFSACPC-LEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG 248 (413)
Q Consensus 175 ~l~~~cp~-Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~ 248 (413)
+..-+. |+.|....... ......-.-..+.|+.|.+. +....+........+++|+.|+++++...
T Consensus 330 --l~v~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~Lyla-----nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 330 --LAVLNASLNTLNVSSNKL-STLPSYEENNHAALQELYLA-----NNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred --HhhhhHHHHHHhhhhccc-cccccccchhhHHHHHHHHh-----cCcccccchhhhccccceeeeeecccccc
Confidence 121222 44444443333 11222011234678888887 76655443445567889999999885443
No 25
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.03 E-value=5.4e-06 Score=80.79 Aligned_cols=82 Identities=18% Similarity=0.103 Sum_probs=44.3
Q ss_pred CcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEE
Q 046658 109 SVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSV 188 (413)
Q Consensus 109 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 188 (413)
.++.|.+.-. ....+|..+..|..|++|++..+....+-+..+.+|+|+.+.++...+....+..=+-....|..|+|
T Consensus 33 ~~~WLkLnrt--~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 33 QMTWLKLNRT--KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred heeEEEechh--hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 4455554432 24556777777777777777776665554456666777766666655532222222222334444444
Q ss_pred Eeee
Q 046658 189 HAYF 192 (413)
Q Consensus 189 ~~~~ 192 (413)
+.+.
T Consensus 111 ShNq 114 (1255)
T KOG0444|consen 111 SHNQ 114 (1255)
T ss_pred chhh
Confidence 4443
No 26
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.02 E-value=0.00044 Score=67.35 Aligned_cols=107 Identities=16% Similarity=0.256 Sum_probs=60.2
Q ss_pred ccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEE-ecCccce
Q 046658 133 TTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFII-ASSTLKH 210 (413)
Q Consensus 133 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i-~~~~L~~ 210 (413)
..+++|.|.++.+.++.. .+.++.+|.+|.|.+.+++.- -...+++.|.||.|+|..+.. .-++. +.. .-++|+.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~i-rive~-ltFqgL~Sl~n 249 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNRI-RIVEG-LTFQGLPSLQN 249 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchhhhhhccccce-eeehh-hhhcCchhhhh
Confidence 667777777776665542 455666777777777766221 134456677788777777655 21222 222 2366666
Q ss_pred eEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccc
Q 046658 211 FTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRL 247 (413)
Q Consensus 211 L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~ 247 (413)
|.+. ......-..+....+.+++.|++..+..
T Consensus 250 lklq-----rN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 250 LKLQ-----RNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred hhhh-----hcCcccccCcceeeecccceeecccchh
Confidence 6666 4433211123444456666666666433
No 27
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.89 E-value=5.1e-05 Score=75.54 Aligned_cols=168 Identities=18% Similarity=0.118 Sum_probs=110.2
Q ss_pred ccccccEEEeCCcccccc---CCCcccCCcccEEEeeee-Ee---ChhhHHHHhccCCccceEEEEeeec-C-CCCcceE
Q 046658 131 TSTTLEVLKLDSDCVINA---PCVGTCFPTMKVLHMQLQ-NL---DNSLTEKMFSACPCLEELSVHAYFD-A-DDSRTNF 201 (413)
Q Consensus 131 ~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~-~~---~~~~l~~l~~~cp~Le~L~l~~~~~-~-~~~~~~~ 201 (413)
.++.|+.|++.+|..... .+....+++|+.|++.++ .. .......+...|+.|+.|.+..|.. . ..+.. +
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~-l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA-L 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH-H
Confidence 379999999998854432 125667999999999872 22 3333455778899999999999984 2 22333 3
Q ss_pred EEecCccceeEEEeeecCCCCCC--CCcceEEEecCceeEEEEeecccc------eeeeecCCCceEEEEEeecceeEEE
Q 046658 202 IIASSTLKHFTLTVVIDTDNHFS--EIDHTVMLKAPNLQCLHIIADRLG------SYVLEEMHCLHEAVVHISYAEWSQA 273 (413)
Q Consensus 202 ~i~~~~L~~L~i~~~~~~~~~~~--~~~~~~~~~~P~L~~L~~~~~~~~------~~~~~~~~~L~~~~i~~~~~~l~l~ 273 (413)
.-.+|+|+.|.+. +|... .+...+.-.+|+|++|+++++..- .. ..++++++.+.+..
T Consensus 265 ~~~c~~L~~L~l~-----~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~-------- 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLS-----NCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLS-------- 330 (482)
T ss_pred HhhCCCcceEccC-----CCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhh--------
Confidence 3458999999988 88843 333345557899999999985431 11 33455555533211
Q ss_pred ecccCcccCCCCCCeeEEEEEeCCCC--hhhHHHHHhcCCCCceEEeccc
Q 046658 274 VDQCYDNFCPSFSELTFLEVKLAGSG--WRVLPIILHSSPNLERLLVDKE 321 (413)
Q Consensus 274 ~~~~~~~~~p~~~~L~~L~l~~~~~~--~~~l~~ll~~~p~L~~L~i~~~ 321 (413)
++.+.+++.+.+..+... .......++.||+|+.+.+...
T Consensus 331 --------~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~ 372 (482)
T KOG1947|consen 331 --------LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC 372 (482)
T ss_pred --------cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh
Confidence 222445666655554332 2456667889999999998874
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.86 E-value=0.00063 Score=46.67 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=38.8
Q ss_pred ccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeee
Q 046658 133 TTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYF 192 (413)
Q Consensus 133 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~ 192 (413)
++|++|.+.+|.+...|. .+.++++|++|++.+..++.- -...+.++|.|+.|.+.+|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 467778887776666654 455678888888877766211 12346677888888777663
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.86 E-value=0.00027 Score=64.58 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=32.0
Q ss_pred cCCCCCCeeEEEEEeCCCC----hhhHHHHHhcCCCCceEEeccccce
Q 046658 281 FCPSFSELTFLEVKLAGSG----WRVLPIILHSSPNLERLLVDKECWF 324 (413)
Q Consensus 281 ~~p~~~~L~~L~l~~~~~~----~~~l~~ll~~~p~L~~L~i~~~~~~ 324 (413)
.+|.+++|+.|.+.+|... ...+..+-+..|+|+.|.+.+...+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 3667788999999998754 2334455667899999998885443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.83 E-value=6.2e-05 Score=63.57 Aligned_cols=122 Identities=15% Similarity=0.241 Sum_probs=39.0
Q ss_pred cccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658 130 YTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL 208 (413)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 208 (413)
-++..++.|+|.|+.+.........+.+|+.|+|+++.+ +-+. +..++.|++|.+.++.. ..+...+....|+|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRI-SSISEGLDKNLPNL 90 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCC-CccccchHHhCCcC
Confidence 345678999999998777662233688999999999988 3333 45579999999999987 33321011236899
Q ss_pred ceeEEEeeecCCCCCCCC-cceEEEecCceeEEEEeecccc------eeeeecCCCceEE
Q 046658 209 KHFTLTVVIDTDNHFSEI-DHTVMLKAPNLQCLHIIADRLG------SYVLEEMHCLHEA 261 (413)
Q Consensus 209 ~~L~i~~~~~~~~~~~~~-~~~~~~~~P~L~~L~~~~~~~~------~~~~~~~~~L~~~ 261 (413)
++|.+. +.....- .-......|+|++|.+.+++.. .+.+..+|+|+.+
T Consensus 91 ~~L~L~-----~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 91 QELYLS-----NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp -EEE-T-----TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred CEEECc-----CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhee
Confidence 999998 6654320 0011125788888888885442 3345556666554
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.79 E-value=0.0026 Score=66.15 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=48.1
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.+..++.+.... ...+|..+. ++|+.|.|.+|.+..+|. .-+++|++|+|.++.++. +..- -.+.|+.|.
T Consensus 178 ~~~~~L~L~~~~--LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~--~l~~nL~~L~Ls~N~Lts--LP~~--l~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILG--LTTIPACIP--EQITTLILDNNELKSLPE--NLQGNIKTLYANSNQLTS--IPAT--LPDTIQEME 247 (754)
T ss_pred cCceEEEeCCCC--cCcCCcccc--cCCcEEEecCCCCCcCCh--hhccCCCEEECCCCcccc--CChh--hhccccEEE
Confidence 345555554332 334555432 467788887776665552 223577777777665521 1111 123567777
Q ss_pred EEeeecCCCCcceEEEecCccceeEEE
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLT 214 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~ 214 (413)
+.+|.. ..+.. .-..+|+.|.+.
T Consensus 248 Ls~N~L-~~LP~---~l~s~L~~L~Ls 270 (754)
T PRK15370 248 LSINRI-TELPE---RLPSALQSLDLF 270 (754)
T ss_pred CcCCcc-CcCCh---hHhCCCCEEECc
Confidence 776655 22221 012356666665
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.00033 Score=62.68 Aligned_cols=111 Identities=18% Similarity=0.257 Sum_probs=76.0
Q ss_pred ccccccccEEEeCCccccccCC---CcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeecCCCCcceEEEe
Q 046658 129 IYTSTTLEVLKLDSDCVINAPC---VGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIA 204 (413)
Q Consensus 129 ~~~~~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~ 204 (413)
+++...+.-|.+.+|.+..... ....+..++.|+|.+..+ +...+..++...|.|+.|.+.++.....+.. +...
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p 119 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLP 119 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-Cccc
Confidence 3444456677777776544321 345678899999999999 7788999999999999999999887444544 4445
Q ss_pred cCccceeEEEeeecCCCCCC-CCcceEEEecCceeEEEEeec
Q 046658 205 SSTLKHFTLTVVIDTDNHFS-EIDHTVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 205 ~~~L~~L~i~~~~~~~~~~~-~~~~~~~~~~P~L~~L~~~~~ 245 (413)
..+|+.|.+. +.... .......-..|.+..|+++++
T Consensus 120 ~~nl~~lVLN-----gT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 120 LKNLRVLVLN-----GTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccceEEEEEc-----CCCCChhhhhhhhhcchhhhhhhhccc
Confidence 5678888888 54432 111233345677777777763
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.0017 Score=58.31 Aligned_cols=223 Identities=15% Similarity=0.193 Sum_probs=128.1
Q ss_pred CCcEEEEEEECcc-eeeecCccccccccccEEEeCCcccccc-CCCcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDSDCVINA-PCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
..++++++....- ++-.+-..+-..|.|+.|+|+.+..... ........+|++|.|.+...+.......++..|.+.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 5788888885321 2333444445668999999987744221 1012356689999999998888888999999999999
Q ss_pred EEEEeeec---CCCCcceEEEecCccceeEEEeeecCCCCCCC--CcceEEEecCceeEEEEeecccceeeeecCCCceE
Q 046658 186 LSVHAYFD---ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSE--IDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHE 260 (413)
Q Consensus 186 L~l~~~~~---~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~--~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~ 260 (413)
|+++.+.. ..+-.+ ..-.+|.++.|.+. .|.... ....+.--.||+..+.+.+++... +.
T Consensus 151 lHmS~N~~rq~n~Dd~c-~e~~s~~v~tlh~~-----~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~--------~s- 215 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNC-IEDWSTEVLTLHQL-----PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT--------ES- 215 (418)
T ss_pred hhhccchhhhhcccccc-ccccchhhhhhhcC-----CcHHHHHHHHHhHHhhcccchheeeecCcccc--------hh-
Confidence 99988733 111112 33345677777777 775421 111222235666666555521100 00
Q ss_pred EEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEeccccceecccccCCccccCcc
Q 046658 261 AVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCV 339 (413)
Q Consensus 261 ~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~ 339 (413)
. +.....++.+--|.|+....+ |.++-. +..+|.|..|.+..-+..+.- .+ ......
T Consensus 216 ---------------~--ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~Pl~d~l-~~---~err~l 273 (418)
T KOG2982|consen 216 ---------------S--EKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSENPLSDPL-RG---GERRFL 273 (418)
T ss_pred ---------------h--cccCCCCCcchhhhhcccccccHHHHHH-HcCCchhheeeccCCcccccc-cC---CcceEE
Confidence 0 111112333345666665554 777664 789999999988763221100 00 111111
Q ss_pred CcccccceeEEEEEeec------CCHhHHHHHHHHHh
Q 046658 340 PQCLLQRVKKIEIIRVQ------GDEDEQRVIEYFLQ 370 (413)
Q Consensus 340 ~~c~~~~L~~v~i~~~~------~~~~~~~l~~~ll~ 370 (413)
+...|..|++.|-. ....|..|++|.+.
T Consensus 274 ---lIaRL~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 274 ---LIARLTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred ---EEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 12456666666543 23468889999886
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.17 E-value=0.005 Score=64.13 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=40.2
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.+++.|.+..+. ...+|..+. ++|+.|+|.+|....+|... ..+|+.|+|++..++. +.. .-++.|+.|.
T Consensus 220 ~nL~~L~Ls~N~--LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N~L~~--LP~--~l~~sL~~L~ 289 (754)
T PRK15370 220 GNIKTLYANSNQ--LTSIPATLP--DTIQEMELSINRITELPERL--PSALQSLDLFHNKISC--LPE--NLPEELRYLS 289 (754)
T ss_pred cCCCEEECCCCc--cccCChhhh--ccccEEECcCCccCcCChhH--hCCCCEEECcCCccCc--ccc--ccCCCCcEEE
Confidence 467777766433 224554332 36777777777655554211 2457777776555421 111 1124666666
Q ss_pred EEeeec
Q 046658 188 VHAYFD 193 (413)
Q Consensus 188 l~~~~~ 193 (413)
+.+|..
T Consensus 290 Ls~N~L 295 (754)
T PRK15370 290 VYDNSI 295 (754)
T ss_pred CCCCcc
Confidence 666654
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.14 E-value=0.019 Score=59.78 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=64.1
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.+-..|++.... ...+|..+. ++|+.|.+.++.+..+|. ..++|++|+|.++.++. +.. ..+.|++|.
T Consensus 201 ~~~~~LdLs~~~--LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCC--CCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccceee
Confidence 445566665443 335777554 478888888877666652 35788888888776631 111 235777777
Q ss_pred EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~ 245 (413)
+.++.. ..+.. ..++|+.|.+. ++... .+....|+|+.|+++++
T Consensus 269 Ls~N~L-~~Lp~----lp~~L~~L~Ls-----~N~Lt----~LP~~p~~L~~LdLS~N 312 (788)
T PRK15387 269 IFSNPL-THLPA----LPSGLCKLWIF-----GNQLT----SLPVLPPGLQELSVSDN 312 (788)
T ss_pred ccCCch-hhhhh----chhhcCEEECc-----CCccc----cccccccccceeECCCC
Confidence 777654 22221 12456666666 55432 11112356777766664
No 36
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.12 E-value=0.00029 Score=58.00 Aligned_cols=70 Identities=21% Similarity=0.335 Sum_probs=50.3
Q ss_pred eeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 122 RVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
...+|+.+....+|+.|++.++.+..+|...+++|.|+.|++...+. ..+..-+.++|.||.|++..+..
T Consensus 45 l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 45 LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhcccccc
Confidence 45667777888888888888888878876777888888888764433 22233345678888888877765
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.78 E-value=0.029 Score=58.56 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=34.2
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL 168 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 168 (413)
.+++.|.+.... ...+|.. .++|++|+|.+|.+..+|. ..++|++|+|.+..+
T Consensus 222 ~~L~~L~L~~N~--Lt~LP~l---p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 222 AHITTLVIPDNN--LTSLPAL---PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL 274 (788)
T ss_pred cCCCEEEccCCc--CCCCCCC---CCCCcEEEecCCccCcccC---cccccceeeccCCch
Confidence 367777776543 2345542 4788999998887666652 246778887776654
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.72 E-value=0.0094 Score=40.73 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=42.5
Q ss_pred CcEEEEEEECcceeeecCccc-cccccccEEEeCCccccccCC-CcccCCcccEEEeeeeE
Q 046658 109 SVRELQLYLGQQNRVQLLETI-YTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQN 167 (413)
Q Consensus 109 ~v~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~ 167 (413)
+++.|++.... ...+|... ..+++|++|+++++....+++ .+.++++|++|++.++.
T Consensus 2 ~L~~L~l~~n~--l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK--LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST--ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC--CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666543 45677644 457999999999998777664 56889999999998764
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.18 E-value=0.011 Score=37.47 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=21.1
Q ss_pred cccEEEeCCccccccCCCcccCCcccEEEeeeeEe
Q 046658 134 TLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL 168 (413)
Q Consensus 134 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 168 (413)
+|++|.+.++.+.++|+....+++|++|++++..+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 56677777766666653356666677776666655
No 40
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.18 E-value=0.00081 Score=66.16 Aligned_cols=170 Identities=16% Similarity=0.087 Sum_probs=93.6
Q ss_pred EEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEe
Q 046658 111 RELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHA 190 (413)
Q Consensus 111 ~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~ 190 (413)
+-++++..+-....+|..+-....++.|+|.....-.+|...+.+.+|++|++.+..+ ..+..=++..|.|+.+.++.
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhHHHhhhc
Confidence 3344444433335678887788899999998766556665678899999999987654 22333357789999999888
Q ss_pred eec-CCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeecce
Q 046658 191 YFD-ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAE 269 (413)
Q Consensus 191 ~~~-~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~ 269 (413)
+.. ..+++. -...-..|..|+++ .... .+...-.-.|.|+-.|.++.+....+.-.-+-+|.++
T Consensus 88 N~LKnsGiP~-diF~l~dLt~lDLS-----hNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL-------- 152 (1255)
T KOG0444|consen 88 NNLKNSGIPT-DIFRLKDLTILDLS-----HNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL-------- 152 (1255)
T ss_pred cccccCCCCc-hhcccccceeeecc-----hhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH--------
Confidence 766 222332 11222334444444 3221 1111222356677777777643222111112223222
Q ss_pred eEEEecccCcccCC----CCCCeeEEEEEeCC
Q 046658 270 WSQAVDQCYDNFCP----SFSELTFLEVKLAG 297 (413)
Q Consensus 270 l~l~~~~~~~~~~p----~~~~L~~L~l~~~~ 297 (413)
+.++++.....++| .+.+|+.|.|+.++
T Consensus 153 LfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred hhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence 23334433333344 45566666666654
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.66 E-value=0.011 Score=53.91 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=34.6
Q ss_pred CccCCCCC----hHHHHHHhcCCCcccchhhcccchhhHHH
Q 046658 2 GYRISDLP----DAILGRIVSFLPTKNTVATSVLSRRWKHV 38 (413)
Q Consensus 2 ~D~is~LP----d~lL~~Ils~L~~~d~~r~s~lSrrWr~l 38 (413)
.|.|+.|| |++..+|||+|+..+..++-.|||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 47899999 99999999999999999999999999863
No 42
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.24 E-value=0.0048 Score=63.50 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=33.7
Q ss_pred hccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcc-eEEEecCceeEEEEeeccccee
Q 046658 177 FSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDH-TVMLKAPNLQCLHIIADRLGSY 250 (413)
Q Consensus 177 ~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~-~~~~~~P~L~~L~~~~~~~~~~ 250 (413)
+..|+.|+.|...++.. ..++. ....|.|+.++++ |...+... .....-|+|++|+++|+....+
T Consensus 426 va~~~~L~tL~ahsN~l-~~fPe--~~~l~qL~~lDlS------~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~ 491 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQL-LSFPE--LAQLPQLKVLDLS------CNNLSEVTLPEALPSPNLKYLDLSGNTRLVF 491 (1081)
T ss_pred HHhhhhhHHHhhcCCce-eechh--hhhcCcceEEecc------cchhhhhhhhhhCCCcccceeeccCCccccc
Confidence 44566666665555444 22221 1235677777775 33332111 1112237999999999654433
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.23 E-value=0.02 Score=59.11 Aligned_cols=132 Identities=15% Similarity=0.136 Sum_probs=69.2
Q ss_pred HhCCcEEEEEEECcceeeecCcccc-ccccccEEEeCCcccccc--CCCcccCCcccEEEeeeeEeChhhHHHHhccCCc
Q 046658 106 LMQSVRELQLYLGQQNRVQLLETIY-TSTTLEVLKLDSDCVINA--PCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPC 182 (413)
Q Consensus 106 ~~~~v~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~ 182 (413)
.+.++++|+++.........|..++ .+|+|++|.+.|-.+... .....+||+|..|++++..++.- .-++..++
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lkn 196 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKN 196 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhcccc
Confidence 3456677776654333333333332 247777777766433211 11345677777777777766322 33456677
Q ss_pred cceEEEEeeec--CCCCcceEEEecCccceeEEEeeecCCCCCCCCc------ceEEEecCceeEEEEeeccc
Q 046658 183 LEELSVHAYFD--ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEID------HTVMLKAPNLQCLHIIADRL 247 (413)
Q Consensus 183 Le~L~l~~~~~--~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~------~~~~~~~P~L~~L~~~~~~~ 247 (413)
|+.|.+.+... .+++.. + ..-.+|+.|+|+ ........ -......|+|+.|+.+|+..
T Consensus 197 Lq~L~mrnLe~e~~~~l~~-L-F~L~~L~vLDIS-----~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLID-L-FNLKKLRVLDIS-----RDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHHhccCCCCCchhhHHH-H-hcccCCCeeecc-----ccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 77777777655 122222 1 123567777776 33222110 01112378899998888544
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.20 E-value=0.029 Score=50.68 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=35.7
Q ss_pred eeecCccccccccccEEEeCCccc--------cc-cCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeee
Q 046658 122 RVQLLETIYTSTTLEVLKLDSDCV--------IN-APCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYF 192 (413)
Q Consensus 122 ~~~lp~~~~~~~~L~~L~L~~~~~--------~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~ 192 (413)
.+.+...+--|..|+.|.+++..- .. +|.....|++|+++.++.| +.+.+..+...=|.|..+.+.+..
T Consensus 171 k~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~--~~~~i~~~~~~kptl~t~~v~~s~ 248 (490)
T KOG1259|consen 171 KYDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSAL--STENIVDIELLKPTLQTICVHNTT 248 (490)
T ss_pred ccchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeecc--chhheeceeecCchhheeeeeccc
Confidence 444444444456777777765311 11 1223445666666666555 233444444455666666655544
Q ss_pred c
Q 046658 193 D 193 (413)
Q Consensus 193 ~ 193 (413)
.
T Consensus 249 ~ 249 (490)
T KOG1259|consen 249 I 249 (490)
T ss_pred c
Confidence 3
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.46 E-value=0.17 Score=43.32 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=33.5
Q ss_pred cccccEEEeCCccccccCCC-cccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec
Q 046658 132 STTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
.+.|.+|-|.++++....+. ..-+|+|+.|.|.+..+ .-.+++. +..||.|++|.+.++..
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPV 125 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCch
Confidence 45666666666655544332 33456666666666655 3333333 24566666666665554
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.26 E-value=0.058 Score=34.06 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=28.5
Q ss_pred CcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 156 PTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 156 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
++|++|+|.+..+++ +...++.||.|+.|.+.++..
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCC
Confidence 579999999998853 555578999999999999976
No 47
>PLN03150 hypothetical protein; Provisional
Probab=92.73 E-value=0.15 Score=52.52 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=48.3
Q ss_pred ccEEEeCCccccc-cCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEE
Q 046658 135 LEVLKLDSDCVIN-APCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTL 213 (413)
Q Consensus 135 L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i 213 (413)
++.|+|.++.... .|.....+++|+.|+|.+..+... +...+..++.|+.|+|.+|.....+.. ..-..++|+.|.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCCEEEC
Confidence 6777777765542 233456778888888887766322 333456778888888888766222222 1123467888888
Q ss_pred E
Q 046658 214 T 214 (413)
Q Consensus 214 ~ 214 (413)
.
T Consensus 498 s 498 (623)
T PLN03150 498 N 498 (623)
T ss_pred c
Confidence 7
No 48
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.60 E-value=0.059 Score=50.99 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=33.2
Q ss_pred CCCCChHHHHHHhcCCC-cccchhhcccchhhHHHHhc
Q 046658 5 ISDLPDAILGRIVSFLP-TKNTVATSVLSRRWKHVWTS 41 (413)
Q Consensus 5 is~LPd~lL~~Ils~L~-~~d~~r~s~lSrrWr~l~~~ 41 (413)
.++||+|+|..|..+|+ .-|.+|.+.|||.||..-..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 47899999999999997 78999999999999986554
No 49
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=92.58 E-value=0.009 Score=49.43 Aligned_cols=83 Identities=20% Similarity=0.187 Sum_probs=59.9
Q ss_pred CcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEE
Q 046658 109 SVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSV 188 (413)
Q Consensus 109 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 188 (413)
+++.+.+.+.. ...+|..+.+.+.|+.|++.-++....|.++++||.|+.|+|......+..+..-+-....|+-|.+
T Consensus 57 nlevln~~nnq--ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 57 NLEVLNLSNNQ--IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred hhhhhhcccch--hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 44445444443 5789999999999999999988877788789999999999999887755444332333344666667
Q ss_pred Eeeec
Q 046658 189 HAYFD 193 (413)
Q Consensus 189 ~~~~~ 193 (413)
.++..
T Consensus 135 ~dndf 139 (264)
T KOG0617|consen 135 GDNDF 139 (264)
T ss_pred cCCCc
Confidence 66655
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.37 E-value=0.37 Score=41.24 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=62.0
Q ss_pred ccccEEEeCCccccccCCCcccCCcccEEEeeeeEeC--hhhHHHHhccCCccceEEEEeeec--CCCCcceEEEecCcc
Q 046658 133 TTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLD--NSLTEKMFSACPCLEELSVHAYFD--ADDSRTNFIIASSTL 208 (413)
Q Consensus 133 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~~~~--~~~~~~~~~i~~~~L 208 (413)
.....++|+.+.....+ .+..++.|.+|.|....++ +..+.. ..|+|..|.+.++.. -.++.. .+.+|+|
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDP--LASCPKL 115 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcch--hccCCcc
Confidence 45667778777665555 5667888999999988872 333333 358899999988766 122221 2467888
Q ss_pred ceeEEEeeecCCCCCCCC--c-ceEEEecCceeEEEEee
Q 046658 209 KHFTLTVVIDTDNHFSEI--D-HTVMLKAPNLQCLHIIA 244 (413)
Q Consensus 209 ~~L~i~~~~~~~~~~~~~--~-~~~~~~~P~L~~L~~~~ 244 (413)
+.|++- +...... - ..+.-..|+|+.|++..
T Consensus 116 ~~Ltll-----~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLL-----GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeec-----CCchhcccCceeEEEEecCcceEeehhh
Confidence 888887 6544311 0 11222445555555554
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.25 E-value=0.04 Score=48.75 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=46.3
Q ss_pred CccceeEEEeeecCCC--CCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcccCC
Q 046658 206 STLKHFTLTVVIDTDN--HFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCP 283 (413)
Q Consensus 206 ~~L~~L~i~~~~~~~~--~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p 283 (413)
|+||.|.++ .. ....+...+...+|+|+++.++++.... +++. ..++
T Consensus 65 p~LkkL~ls-----dn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl------------------------~pl~ 113 (260)
T KOG2739|consen 65 PKLKKLELS-----DNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL------------------------RPLK 113 (260)
T ss_pred chhhhhccc-----CCcccccccceehhhhCCceeEEeecCCcccc--cccc------------------------chhh
Confidence 566666666 44 3333444555667888888888732211 1111 1134
Q ss_pred CCCCeeEEEEEeCCCC--hhhHHHHHhcCCCCceEE
Q 046658 284 SFSELTFLEVKLAGSG--WRVLPIILHSSPNLERLL 317 (413)
Q Consensus 284 ~~~~L~~L~l~~~~~~--~~~l~~ll~~~p~L~~L~ 317 (413)
.+.||+.|.+.+|... ..-=..++...|.|..|.
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 6678888888887643 222334555667777665
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.96 E-value=0.1 Score=46.64 Aligned_cols=43 Identities=9% Similarity=-0.016 Sum_probs=32.6
Q ss_pred CcccCCcccEEEeeeeEe---ChhhHHHHhccCCccceEEEEeeec
Q 046658 151 VGTCFPTMKVLHMQLQNL---DNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 151 ~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
....||+|++.+|+...+ ....+..++++...|++|.+.+|..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 344577777777777666 3456788888888999999999977
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.78 E-value=0.03 Score=49.94 Aligned_cols=209 Identities=14% Similarity=0.102 Sum_probs=116.9
Q ss_pred cceEEeeecCCCCcccHHHHHHHHHh--CCcEEEEEE--ECcceee-------ecCccccccccccEEEeCCccccc-cC
Q 046658 82 IDSFCLHCSRPIDLSSVNFWLSSALM--QSVRELQLY--LGQQNRV-------QLLETIYTSTTLEVLKLDSDCVIN-AP 149 (413)
Q Consensus 82 l~~l~l~~~~~~~~~~~~~wl~~a~~--~~v~~L~l~--~~~~~~~-------~lp~~~~~~~~L~~L~L~~~~~~~-~~ 149 (413)
+..+.++. ..-+.....|+....+ ++++...++ +.....- .+.+.+..||.|+..+|+.+.+-. .|
T Consensus 32 ~~evdLSG--NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 32 LVEVDLSG--NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred eeEEeccC--CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 44555553 3445668889876554 455555554 1121112 233556789999999999875432 22
Q ss_pred C----CcccCCcccEEEeeeeEeC---hhhHH----HH-----hccCCccceEEEEeeecCCCCcce--EEEec-Cccce
Q 046658 150 C----VGTCFPTMKVLHMQLQNLD---NSLTE----KM-----FSACPCLEELSVHAYFDADDSRTN--FIIAS-STLKH 210 (413)
Q Consensus 150 ~----~~~~~~~L~~L~L~~~~~~---~~~l~----~l-----~~~cp~Le~L~l~~~~~~~~~~~~--~~i~~-~~L~~ 210 (413)
. ..++-..|++|.|.++.++ +.-+. .+ .+.-|.||......++........ ....+ ..|+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 2 3456678999999999873 22232 11 345788998887777661111110 11122 46888
Q ss_pred eEEEeeecCCCCCC-CCcce----EEEecCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcccCCCC
Q 046658 211 FTLTVVIDTDNHFS-EIDHT----VMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSF 285 (413)
Q Consensus 211 L~i~~~~~~~~~~~-~~~~~----~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~ 285 (413)
+.|. ....- .|... -...+.+|+.|++.++.+. ..-+..-...+|..
T Consensus 190 vki~-----qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft-----------------------~~gS~~La~al~~W 241 (388)
T COG5238 190 VKIQ-----QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT-----------------------LEGSRYLADALCEW 241 (388)
T ss_pred EEee-----ecCcCcchhHHHHHHHHHHhCcceeeeccccchh-----------------------hhhHHHHHHHhccc
Confidence 8887 43321 11111 1124667777777773220 00000001235667
Q ss_pred CCeeEEEEEeCCCChhhHHHHHh-----cCCCCceEEecc
Q 046658 286 SELTFLEVKLAGSGWRVLPIILH-----SSPNLERLLVDK 320 (413)
Q Consensus 286 ~~L~~L~l~~~~~~~~~l~~ll~-----~~p~L~~L~i~~ 320 (413)
++|++|.+..|-....+...+++ ..|+|+.|..+.
T Consensus 242 ~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 242 NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred chhhhccccchhhccccHHHHHHHhhhhcCCCccccccch
Confidence 78999999998765444444444 457888887665
No 54
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=90.61 E-value=0.09 Score=47.73 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=29.8
Q ss_pred CCCCChHHHHHHhcC-----CCcccchhhcccchhhHHH
Q 046658 5 ISDLPDAILGRIVSF-----LPTKNTVATSVLSRRWKHV 38 (413)
Q Consensus 5 is~LPd~lL~~Ils~-----L~~~d~~r~s~lSrrWr~l 38 (413)
|+.||||||..||.. ++.++..++|.|||.|+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 679999999999965 4679999999999999853
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.58 E-value=0.07 Score=47.28 Aligned_cols=106 Identities=19% Similarity=0.152 Sum_probs=61.2
Q ss_pred ccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeecCCCCcceEEE--ecCc
Q 046658 131 TSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFDADDSRTNFII--ASST 207 (413)
Q Consensus 131 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i--~~~~ 207 (413)
....|+.|++.++...... ..-.+|+||+|.++.... ....+.-++..||+|.+|.+..+.. ..+.+ +.- .-++
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~~lst-l~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-KDLST-LRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-ccccc-cchhhhhcc
Confidence 3456666776665443332 223567888888887755 4455677777889999999988877 33333 211 1245
Q ss_pred cceeEEEeeecCCCCCCCC---cceEEEecCceeEEEEee
Q 046658 208 LKHFTLTVVIDTDNHFSEI---DHTVMLKAPNLQCLHIIA 244 (413)
Q Consensus 208 L~~L~i~~~~~~~~~~~~~---~~~~~~~~P~L~~L~~~~ 244 (413)
|+.|.+. +|....- ...+..-+|.|.+|+..+
T Consensus 118 L~~Ldl~-----n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLF-----NCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcc-----cCCccccccHHHHHHHHhhhhccccccc
Confidence 6677776 6653210 011222356666665554
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=88.63 E-value=0.84 Score=43.98 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=39.4
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccc-cCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVIN-APCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
.+...|+++.+. ...+|. --++|++|.+.+|.... .| .. -.++|++|++.+|.. +..+ -+.|+.|
T Consensus 52 ~~l~~L~Is~c~--L~sLP~---LP~sLtsL~Lsnc~nLtsLP-~~-LP~nLe~L~Ls~Cs~----L~sL---P~sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCD--IESLPV---LPNELTEITIENCNNLTTLP-GS-IPEGLEKLTVCHCPE----ISGL---PESVRSL 117 (426)
T ss_pred cCCCEEEeCCCC--CcccCC---CCCCCcEEEccCCCCcccCC-ch-hhhhhhheEccCccc----cccc---ccccceE
Confidence 678888888653 334452 12468999998875432 22 11 125788888887732 1111 1356777
Q ss_pred EEEe
Q 046658 187 SVHA 190 (413)
Q Consensus 187 ~l~~ 190 (413)
.+..
T Consensus 118 ~L~~ 121 (426)
T PRK15386 118 EIKG 121 (426)
T ss_pred EeCC
Confidence 6653
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=87.99 E-value=1.1 Score=43.29 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=24.4
Q ss_pred CCcccEEEeeeeEeChhhHHHHhccCC-ccceEEEEeeecCCCCcceEE-EecCccceeEEE
Q 046658 155 FPTMKVLHMQLQNLDNSLTEKMFSACP-CLEELSVHAYFDADDSRTNFI-IASSTLKHFTLT 214 (413)
Q Consensus 155 ~~~L~~L~L~~~~~~~~~l~~l~~~cp-~Le~L~l~~~~~~~~~~~~~~-i~~~~L~~L~i~ 214 (413)
++++++|+++++.+.. +. ..| .|++|.+.+|.. +.. +. .-.++|+.|.+.
T Consensus 51 ~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~n---Lts-LP~~LP~nLe~L~Ls 102 (426)
T PRK15386 51 ARASGRLYIKDCDIES--LP----VLPNELTEITIENCNN---LTT-LPGSIPEGLEKLTVC 102 (426)
T ss_pred hcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCC---ccc-CCchhhhhhhheEcc
Confidence 4666666666653311 11 122 466666666655 222 11 112456666666
No 58
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.42 E-value=0.028 Score=52.77 Aligned_cols=176 Identities=14% Similarity=0.137 Sum_probs=86.3
Q ss_pred CCcEEEEEEECcceeeecCcccccccc---ccEEEeCCccccccCCCcccCCcc-cEEEeeeeEeChhhHHHHhccCCcc
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTT---LEVLKLDSDCVINAPCVGTCFPTM-KVLHMQLQNLDNSLTEKMFSACPCL 183 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~---L~~L~L~~~~~~~~~~~~~~~~~L-~~L~L~~~~~~~~~l~~l~~~cp~L 183 (413)
+..+.++++... ...+|..+|.... ..+.+++++....+|.....+..+ +.+.++...+ ..+...++..++|
T Consensus 362 i~tkiL~~s~~q--lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i--sfv~~~l~~l~kL 437 (565)
T KOG0472|consen 362 ITTKILDVSDKQ--LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI--SFVPLELSQLQKL 437 (565)
T ss_pred hhhhhhcccccc--cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc--ccchHHHHhhhcc
Confidence 345555555332 3456666666644 667777777666665322222222 2233332222 2345556777888
Q ss_pred ceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEE
Q 046658 184 EELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVV 263 (413)
Q Consensus 184 e~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i 263 (413)
.-|.++++.. .+++. -.-.--+|+.|.++ ...+-. ...+.-....|+.+-.+.. .
T Consensus 438 t~L~L~NN~L-n~LP~-e~~~lv~Lq~LnlS-----~NrFr~-lP~~~y~lq~lEtllas~n-----------q------ 492 (565)
T KOG0472|consen 438 TFLDLSNNLL-NDLPE-EMGSLVRLQTLNLS-----FNRFRM-LPECLYELQTLETLLASNN-----------Q------ 492 (565)
T ss_pred eeeecccchh-hhcch-hhhhhhhhheeccc-----cccccc-chHHHhhHHHHHHHHhccc-----------c------
Confidence 8888887765 33322 11112236666666 322110 0000000000111100100 0
Q ss_pred EeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccce
Q 046658 264 HISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWF 324 (413)
Q Consensus 264 ~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~ 324 (413)
+...+...+..+.||+.|++..+ +...++.++.+|.+|++|.+.+.+++
T Consensus 493 ----------i~~vd~~~l~nm~nL~tLDL~nN--dlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 ----------IGSVDPSGLKNMRNLTTLDLQNN--DLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ----------ccccChHHhhhhhhcceeccCCC--chhhCChhhccccceeEEEecCCccC
Confidence 00000111334566777776553 37788899999999999999886554
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.27 E-value=0.028 Score=50.28 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=38.1
Q ss_pred cccccEEEeCCccccccCCCcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEee
Q 046658 132 STTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAY 191 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~ 191 (413)
.+.|++|.|+-+.+..+. ....|.+|+.|+|+...+ +-+.+.. +.+.|+|+.|+|..+
T Consensus 40 Mp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDEN 98 (388)
T ss_pred cccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccC
Confidence 356777777766555554 456677788888877777 4444444 356777888877664
No 60
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.63 E-value=0.091 Score=44.83 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=42.2
Q ss_pred CcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec-CCCCcceEEEecCccceeEEE
Q 046658 151 VGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD-ADDSRTNFIIASSTLKHFTLT 214 (413)
Q Consensus 151 ~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~-~~~~~~~~~i~~~~L~~L~i~ 214 (413)
...++++++.|.+.+|.. ++..++.+-...|+|+.|+|+.|.- .+..-. .-...++|+.|.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLY 184 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhc
Confidence 445677788888888877 8888888877788888888888876 221111 11234566666665
No 61
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.56 E-value=0.54 Score=25.69 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=13.8
Q ss_pred CCcccEEEeeeeEe-ChhhHHHHh
Q 046658 155 FPTMKVLHMQLQNL-DNSLTEKMF 177 (413)
Q Consensus 155 ~~~L~~L~L~~~~~-~~~~l~~l~ 177 (413)
+|+|++|+|.+|.. ++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 45666666666654 666665543
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=84.66 E-value=0.34 Score=48.73 Aligned_cols=37 Identities=27% Similarity=0.457 Sum_probs=34.9
Q ss_pred CccCCCCChHHHHHHhcCCCcccchhhcccchhhHHH
Q 046658 2 GYRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHV 38 (413)
Q Consensus 2 ~D~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l 38 (413)
.|.|+.||-++..+||++|+.++.+..+.+|+.|+.+
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 5789999999999999999999999999999999864
No 63
>PLN03150 hypothetical protein; Provisional
Probab=84.23 E-value=1 Score=46.50 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=61.1
Q ss_pred cEEEEEEECcceeeecCccccccccccEEEeCCcccc-ccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEE
Q 046658 110 VRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVI-NAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSV 188 (413)
Q Consensus 110 v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 188 (413)
+..|.+.... -...+|..+..+++|+.|+|.+|.+. ..|.....+++|+.|+|.++.+... +...+..++.|+.|.|
T Consensus 420 v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQG-LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCC-ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence 4445544332 23467778888899999999998765 3454677899999999999887432 3445678999999999
Q ss_pred Eeeec
Q 046658 189 HAYFD 193 (413)
Q Consensus 189 ~~~~~ 193 (413)
.+|..
T Consensus 498 s~N~l 502 (623)
T PLN03150 498 NGNSL 502 (623)
T ss_pred cCCcc
Confidence 99876
No 64
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.97 E-value=1.1 Score=23.79 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=11.1
Q ss_pred CCcccEEEeeeeEeChhhHHH
Q 046658 155 FPTMKVLHMQLQNLDNSLTEK 175 (413)
Q Consensus 155 ~~~L~~L~L~~~~~~~~~l~~ 175 (413)
+++|++|+|+++.++++.+..
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHH
Confidence 356677777766665555544
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.13 E-value=0.25 Score=44.45 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=59.5
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC--CcccCCcccEEEeeeeEe----ChhhHHHHhccCC
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC--VGTCFPTMKVLHMQLQNL----DNSLTEKMFSACP 181 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~----~~~~l~~l~~~cp 181 (413)
++++.|.++..... .| ..+-.|..|+.|.|..+.+.++.. +..++|+|++|.|..... +.+--..++...|
T Consensus 41 p~lEVLsLSvNkIs--sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 41 PLLEVLSLSVNKIS--SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred ccceeEEeeccccc--cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 68899999876531 12 224569999999998876665431 677999999999997766 2333456678899
Q ss_pred ccceEEEEeeec
Q 046658 182 CLEELSVHAYFD 193 (413)
Q Consensus 182 ~Le~L~l~~~~~ 193 (413)
+|++|+=.....
T Consensus 118 nLkKLDnv~Vte 129 (388)
T KOG2123|consen 118 NLKKLDNVPVTE 129 (388)
T ss_pred cchhccCccccH
Confidence 999997555433
No 66
>PF13013 F-box-like_2: F-box-like domain
Probab=75.19 E-value=1.4 Score=33.83 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=25.7
Q ss_pred CCCCChHHHHHHhcCCCcccchhhcccch
Q 046658 5 ISDLPDAILGRIVSFLPTKNTVATSVLSR 33 (413)
Q Consensus 5 is~LPd~lL~~Ils~L~~~d~~r~s~lSr 33 (413)
+.+||+|++..|+.+-...+.......++
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 67899999999999999999988777776
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.85 E-value=0.79 Score=39.28 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=45.7
Q ss_pred ccccccccEEEeCCccccccCC---CcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec
Q 046658 129 IYTSTTLEVLKLDSDCVINAPC---VGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 129 ~~~~~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
+..++++++|++.+|..++--. .....|+|+.|+|++|+- ++..+..+ ..+++|+.|.+.+-..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLYDLPY 188 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHHHHhcCchh
Confidence 3456888888888875543211 223678999999998865 88877665 5578888888887766
No 68
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=72.84 E-value=1.6 Score=46.85 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=20.1
Q ss_pred eecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeee
Q 046658 123 VQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQ 166 (413)
Q Consensus 123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~ 166 (413)
..||..+...-+|++|+|.+.....+|.....+..|.+|++...
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccc
Confidence 34444444444444444444444444434444444444444433
No 69
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=71.41 E-value=8.8 Score=39.68 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=36.8
Q ss_pred CCCcceEEeeecCCCCcccHHHH---HHHHHhCCcEEEEEEECcc-eeeecCccccccccccEEEeCCccc
Q 046658 79 PGNIDSFCLHCSRPIDLSSVNFW---LSSALMQSVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDSDCV 145 (413)
Q Consensus 79 ~~~l~~l~l~~~~~~~~~~~~~w---l~~a~~~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~ 145 (413)
|++++.|....+...+...+... +... ...+.+.+..... +.+. |-.+|...+|++|.|.+|.+
T Consensus 54 g~~~~~f~a~~s~~ads~vl~qLq~i~d~l--qkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 54 GAPVDYFRAYVSDNADSRVLEQLQRILDFL--QKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDL 121 (1096)
T ss_pred CCCCceeEEecCCcccchHHHHHHHHHHHH--hhheeeeecccCCCCCCC-CceeccccceeeEEecCcch
Confidence 44688888776655444333222 2221 2333444443322 2333 77788889999999998754
No 70
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=71.15 E-value=2.6 Score=40.18 Aligned_cols=109 Identities=13% Similarity=0.131 Sum_probs=62.1
Q ss_pred ccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe--ChhhHHHHhccCCccceEEEEeeecCCCCcceE-EE
Q 046658 127 ETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL--DNSLTEKMFSACPCLEELSVHAYFDADDSRTNF-II 203 (413)
Q Consensus 127 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~-~i 203 (413)
..+...+.|..|+|+++..-+.|...+++-.|++|+++..+| -++.+.. -..||.+..+++.. ..+.. - ..
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~----lq~lEtllas~nqi-~~vd~-~~l~ 502 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYE----LQTLETLLASNNQI-GSVDP-SGLK 502 (565)
T ss_pred HHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhh----HHHHHHHHhccccc-cccCh-HHhh
Confidence 344455788888888877667776677777788888887766 2222211 12344444444433 11111 0 00
Q ss_pred ecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccc
Q 046658 204 ASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRL 247 (413)
Q Consensus 204 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~ 247 (413)
.-.+|+.|++. +... .......-.+.||+.|.++|..+
T Consensus 503 nm~nL~tLDL~-----nNdl-q~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 503 NMRNLTTLDLQ-----NNDL-QQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhhcceeccC-----CCch-hhCChhhccccceeEEEecCCcc
Confidence 11345566664 4332 23345566788899999888655
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=69.57 E-value=3.6 Score=19.89 Aligned_cols=11 Identities=27% Similarity=0.449 Sum_probs=5.4
Q ss_pred cccEEEeCCcc
Q 046658 134 TLEVLKLDSDC 144 (413)
Q Consensus 134 ~L~~L~L~~~~ 144 (413)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45666666654
No 72
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=69.53 E-value=9.2 Score=41.18 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=41.7
Q ss_pred ccccEEEeCCccccccCCCcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcccee
Q 046658 133 TTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHF 211 (413)
Q Consensus 133 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L 211 (413)
...+.+.+.++.....+ ....+|.|++|-+..... -...-...+...|.|..|++++|.....++. ..-.--+|+.|
T Consensus 523 ~~~rr~s~~~~~~~~~~-~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA-GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhcc-CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcc
Confidence 45666666666554444 445566777777766532 1111122345567777777776655122222 11112356666
Q ss_pred EEE
Q 046658 212 TLT 214 (413)
Q Consensus 212 ~i~ 214 (413)
++.
T Consensus 601 ~L~ 603 (889)
T KOG4658|consen 601 DLS 603 (889)
T ss_pred ccc
Confidence 665
No 73
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=67.48 E-value=0.93 Score=41.28 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=62.2
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L 186 (413)
+.++.|.++...-.. + ..+...++|+.|+|+++......+--..+-+.|+|.|.+..+ +-.++.++- .|+.|
T Consensus 307 Pkir~L~lS~N~i~~--v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLY----SLvnL 379 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRT--V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLY----SLVNL 379 (490)
T ss_pred cceeEEeccccceee--e-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhh----hheec
Confidence 466777776544211 1 123446789999999986554442233567788898887776 555566654 38888
Q ss_pred EEEeeecCCCCcceEEEe-cCccceeEEE
Q 046658 187 SVHAYFDADDSRTNFIIA-SSTLKHFTLT 214 (413)
Q Consensus 187 ~l~~~~~~~~~~~~~~i~-~~~L~~L~i~ 214 (413)
+++++.. ..+...-.|. -|.|+.+.+.
T Consensus 380 Dl~~N~I-e~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 380 DLSSNQI-EELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred cccccch-hhHHHhcccccccHHHHHhhc
Confidence 8888776 3333311132 3788888887
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=60.11 E-value=6.6 Score=20.30 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=10.1
Q ss_pred cccEEEeCCccccccC
Q 046658 134 TLEVLKLDSDCVINAP 149 (413)
Q Consensus 134 ~L~~L~L~~~~~~~~~ 149 (413)
+|++|+|++|.+..+|
T Consensus 1 ~L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIP 16 (22)
T ss_dssp TESEEEETSSEESEEG
T ss_pred CccEEECCCCcCEeCC
Confidence 4677777777554444
No 75
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=56.39 E-value=3 Score=37.20 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=37.1
Q ss_pred CCCCChHHHHHHhcCCC-cccchhhcccchhh------HHHHhccCeeeeecCCC
Q 046658 5 ISDLPDAILGRIVSFLP-TKNTVATSVLSRRW------KHVWTSLANLSFDDRLC 52 (413)
Q Consensus 5 is~LPd~lL~~Ils~L~-~~d~~r~s~lSrrW------r~l~~~~~~L~~~~~~~ 52 (413)
+.+||.+++..|+.+++ -+|...++.+-..- +.+|+.+-..+|.+..+
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 78999999999999998 89999988773222 45677776677765553
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=51.94 E-value=5.7 Score=38.76 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=35.4
Q ss_pred ccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec
Q 046658 131 TSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 131 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
...+|..|.+.++.+.........+++|++|+|+...+ +-..+.. ++.|+.|.+.++..
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGNLI 152 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccchhh----ccchhhheeccCcc
Confidence 34667777777766555541255677777777776666 3333333 33477777777665
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.85 E-value=14 Score=20.46 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=14.5
Q ss_pred CcccEEEeeeeEeChhhHHHH
Q 046658 156 PTMKVLHMQLQNLDNSLTEKM 176 (413)
Q Consensus 156 ~~L~~L~L~~~~~~~~~l~~l 176 (413)
++|++|+|++..++++....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 567888888887766555444
No 78
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=46.68 E-value=8.9 Score=37.01 Aligned_cols=103 Identities=18% Similarity=0.247 Sum_probs=62.0
Q ss_pred cccccEEEeCCccccccCCCcccCC-cccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccce
Q 046658 132 STTLEVLKLDSDCVINAPCVGTCFP-TMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKH 210 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~ 210 (413)
.+.+..|.+.++...+.++....++ +|+.|++.+..+.. +..-+..+|.|+.|.+.++.. .++.. .....+.|+.
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l-~~l~~-~~~~~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDL-SDLPK-LLSNLSNLNN 190 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchh-hhhhh-hhhhhhhhhh
Confidence 3568888888877777663444443 78888888776522 113356788888888888877 33333 2225677888
Q ss_pred eEEEeeecCCCCCCCCcceEEEecCc-eeEEEEeec
Q 046658 211 FTLTVVIDTDNHFSEIDHTVMLKAPN-LQCLHIIAD 245 (413)
Q Consensus 211 L~i~~~~~~~~~~~~~~~~~~~~~P~-L~~L~~~~~ 245 (413)
|.+. +..... -...+..++ |++|.+...
T Consensus 191 L~ls-----~N~i~~--l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLS-----GNKISD--LPPEIELLSALEELDLSNN 219 (394)
T ss_pred eecc-----CCcccc--CchhhhhhhhhhhhhhcCC
Confidence 8887 654321 011112344 777766663
No 79
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=45.86 E-value=7.6 Score=37.49 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=66.9
Q ss_pred CcEEEEEEECcceeeecCccccccc-cccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 109 SVRELQLYLGQQNRVQLLETIYTST-TLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 109 ~v~~L~l~~~~~~~~~lp~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.+..+.+.... ...+|+.....+ .|+.|.+.++.....|.....+++|+.|.+....+.+ +.......+.|+.|.
T Consensus 117 ~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLD 192 (394)
T ss_pred ceeEEecCCcc--cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhee
Confidence 34455544333 456666655564 8999999998887775467889999999999887632 233333678999999
Q ss_pred EEeeecCCCCcceEEEecCccceeEEE
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLT 214 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~ 214 (413)
+.++.. ..+.. ..-....|++|.+.
T Consensus 193 ls~N~i-~~l~~-~~~~~~~L~~l~~~ 217 (394)
T COG4886 193 LSGNKI-SDLPP-EIELLSALEELDLS 217 (394)
T ss_pred ccCCcc-ccCch-hhhhhhhhhhhhhc
Confidence 999887 33332 11122348888887
No 80
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=45.59 E-value=4.9 Score=32.50 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=28.1
Q ss_pred ccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 133 TTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 133 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
..|...+|+++.+.++|. ....||.+++|+|.+..+.+--.+ ++..|.|+.|.++.+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPL 112 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcc
Confidence 344455555555555443 223345555555555544221111 34445555555555544
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=45.10 E-value=7.3 Score=38.05 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=38.3
Q ss_pred ccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec
Q 046658 129 IYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 129 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
+-.+++|++|+|+++.+.+.. ....++.|+.|++.+..+ +-..+.. ++.|+.|.+.++..
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~----l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLES----LKSLKLLDLSYNRI 174 (414)
T ss_pred hhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCcc----chhhhcccCCcchh
Confidence 344677888888777666655 555666677777777766 3333322 56666666666655
No 82
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=40.84 E-value=1.5e+02 Score=23.45 Aligned_cols=117 Identities=10% Similarity=0.126 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhccCCC-CcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCc--cccccccccEEEeC
Q 046658 65 GFVDFVQTVLLRTHPG-NIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLE--TIYTSTTLEVLKLD 141 (413)
Q Consensus 65 ~~~~~v~~~L~~~~~~-~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~ 141 (413)
.|.+.+..++.. ..+ .+++|.+.. .+...+...+...-...+++|.+. .......+.. .+-..++++.+.+.
T Consensus 2 ~~~~~l~~~l~s-~~~l~vk~l~i~~---~~~~~~~~iL~~l~p~~L~~i~i~-~~~~~~~~~~i~~~eqWk~~k~~~i~ 76 (142)
T PF01827_consen 2 KFFEKLQEILKS-KHKLKVKKLKINS---LNQSEVLSILPFLDPGVLEEIRIN-DEEEEEDFDEIVELEQWKNAKEFKIG 76 (142)
T ss_pred hHHHHHHHHHcC-CCCeeEEEEEEEc---CCHHHHHHHHhcCCCCcCEEEECc-CcccccchhheeehHHhceeheeEec
Confidence 356677777777 443 688888776 344677788888766778999992 1111111111 11124788888887
Q ss_pred CccccccCCCcccCCcccEEEeeeeEeChhhHHHHh---ccCCccceEEE
Q 046658 142 SDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMF---SACPCLEELSV 188 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~---~~cp~Le~L~l 188 (413)
+...... ....|.++....+.--.++.+++..+. ...|.++.-.+
T Consensus 77 ~~~~~~~--~l~~f~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 77 GFVIDSF--PLENFSHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred ccccccH--HHHhCCCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEE
Confidence 7543211 255677777777755455655554443 44555555555
No 83
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=36.59 E-value=12 Score=30.36 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=46.0
Q ss_pred CCcEEEEEEECcceeeecCcccc-ccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe
Q 046658 108 QSVRELQLYLGQQNRVQLLETIY-TSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL 168 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 168 (413)
++.+-..++..+.....+|..+. ..++.+.|+|.++.+.++|......|.|+.|+++...+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence 45555455555555666776533 33689999999999889887788999999999998877
No 84
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=35.25 E-value=42 Score=32.23 Aligned_cols=43 Identities=9% Similarity=0.015 Sum_probs=21.0
Q ss_pred eecCccccc-cccccEEEeCCccccccCC-CcccCCcccEEEeee
Q 046658 123 VQLLETIYT-STTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQL 165 (413)
Q Consensus 123 ~~lp~~~~~-~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~ 165 (413)
-.+|+..|. .+.|++|+|+.+.+....+ .+.++++|.+|.+.+
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence 344544433 3556666666554443321 344555555555554
No 85
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=31.21 E-value=14 Score=34.15 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=34.3
Q ss_pred CCCCChHHHHHHhcCCCcccchhhcccchhhHHHHhccC
Q 046658 5 ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLA 43 (413)
Q Consensus 5 is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~~~~ 43 (413)
+..+|+++++.|++|+.-+++++.+.+|+|-..+....|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 346899999999999999999999999999987766555
No 86
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=28.60 E-value=33 Score=32.90 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCCCceEEEEe
Q 046658 362 QRVIEYFLQQCKCLEVMIINC 382 (413)
Q Consensus 362 ~~l~~~ll~~a~~Le~l~i~~ 382 (413)
..+..+.+.+++.|-+++|++
T Consensus 477 ~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 477 SSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred ehhhcccccchhhhheeEEec
Confidence 344566666777777777665
No 87
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=28.16 E-value=18 Score=37.49 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=18.7
Q ss_pred ccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEe
Q 046658 129 IYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNL 168 (413)
Q Consensus 129 ~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~ 168 (413)
+..|+.|++|+|+.|....+|. ...+|. |..|.|++..+
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred HHhcccccccccccchhccccccchhhhh-heeeeecccHH
Confidence 3445566666665554444432 223333 55555555444
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.39 E-value=36 Score=34.01 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred ccccccEEEeCCccccccCC---CcccCCcccEEEeeee--Ee-ChhhHHHHhccCCccceEEEEeee
Q 046658 131 TSTTLEVLKLDSDCVINAPC---VGTCFPTMKVLHMQLQ--NL-DNSLTEKMFSACPCLEELSVHAYF 192 (413)
Q Consensus 131 ~~~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~--~~-~~~~l~~l~~~cp~Le~L~l~~~~ 192 (413)
+.+.+.++.|.+++...+.. .+...|+|++|+|++. .+ ++..+.+ -+.+-||+|.+.++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNP 281 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCc
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=23.81 E-value=1e+02 Score=23.70 Aligned_cols=58 Identities=17% Similarity=0.358 Sum_probs=25.1
Q ss_pred cccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEe
Q 046658 130 YTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHA 190 (413)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~ 190 (413)
..|..|+.+.+... ....+. .+.++++|+.+++... +.. .-...+..|+.|+.+.+.+
T Consensus 9 ~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 9 YNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEETS
T ss_pred hCCCCCCEEEECCC-eeEeChhhccccccccccccccc-ccc-cceeeeecccccccccccc
Confidence 34567777777643 222221 4556667777777642 200 0123356676777777743
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=21.46 E-value=71 Score=16.87 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=11.6
Q ss_pred ccccEEEeCCccccccC
Q 046658 133 TTLEVLKLDSDCVINAP 149 (413)
Q Consensus 133 ~~L~~L~L~~~~~~~~~ 149 (413)
++|++|+|.+|.+..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 46777888777665555
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=21.46 E-value=71 Score=16.87 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=11.6
Q ss_pred ccccEEEeCCccccccC
Q 046658 133 TTLEVLKLDSDCVINAP 149 (413)
Q Consensus 133 ~~L~~L~L~~~~~~~~~ 149 (413)
++|++|+|.+|.+..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 46777888777665555
Done!