Query 046658
Match_columns 413
No_of_seqs 162 out of 1814
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 04:55:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.8 7.7E-20 2.6E-24 185.3 7.4 218 3-244 7-252 (592)
2 2p1m_B Transport inhibitor res 99.8 5.3E-21 1.8E-25 193.8 -1.8 220 2-244 3-244 (594)
3 2ast_B S-phase kinase-associat 99.7 1.4E-19 4.8E-24 170.2 -4.4 232 4-263 8-254 (336)
4 4fcg_A Uncharacterized protein 99.1 2.1E-10 7.2E-15 107.1 9.1 202 102-320 75-286 (328)
5 3ogk_B Coronatine-insensitive 98.9 5E-10 1.7E-14 113.0 6.0 238 127-384 264-524 (592)
6 2p1m_B Transport inhibitor res 98.9 5E-09 1.7E-13 105.7 9.4 109 80-191 105-221 (594)
7 2ast_B S-phase kinase-associat 98.8 8.7E-11 3E-15 109.9 -5.4 107 133-245 70-178 (336)
8 4fcg_A Uncharacterized protein 98.8 3.9E-09 1.3E-13 98.5 4.9 228 71-320 72-310 (328)
9 2z80_A TOLL-like receptor 2, v 98.7 4.8E-08 1.7E-12 91.9 10.9 173 134-320 53-231 (353)
10 4fmz_A Internalin; leucine ric 98.7 1.1E-08 3.7E-13 96.0 5.3 83 284-385 241-323 (347)
11 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 9.9E-09 3.4E-13 67.8 3.5 38 3-40 7-44 (53)
12 2z80_A TOLL-like receptor 2, v 98.7 1.1E-07 3.6E-12 89.5 11.0 79 285-373 248-331 (353)
13 1ozn_A Reticulon 4 receptor; N 98.6 1.1E-08 3.6E-13 93.4 3.5 37 130-166 53-90 (285)
14 2ca6_A RAN GTPase-activating p 98.6 3.1E-09 1.1E-13 101.4 -0.9 246 108-385 32-315 (386)
15 3o6n_A APL1; leucine-rich repe 98.6 3.4E-09 1.2E-13 101.2 -1.4 103 108-214 69-173 (390)
16 1o6v_A Internalin A; bacterial 98.6 1.2E-07 4.1E-12 92.7 9.4 183 108-320 90-274 (466)
17 2o6q_A Variable lymphocyte rec 98.6 2.3E-08 8E-13 90.4 3.8 60 133-193 37-97 (270)
18 2id5_A Lingo-1, leucine rich r 98.6 1.6E-08 5.5E-13 99.3 2.4 198 108-320 56-257 (477)
19 1o6v_A Internalin A; bacterial 98.6 1.1E-07 3.6E-12 93.1 8.2 160 80-263 90-250 (466)
20 3rgz_A Protein brassinosteroid 98.5 7.5E-09 2.6E-13 107.8 -0.8 147 108-264 100-255 (768)
21 3zyi_A Leucine-rich repeat-con 98.5 3.3E-08 1.1E-12 96.4 3.8 38 284-322 264-301 (452)
22 2id5_A Lingo-1, leucine rich r 98.5 7.2E-08 2.5E-12 94.6 5.9 177 130-320 125-305 (477)
23 2z81_A CD282 antigen, TOLL-lik 98.5 4.4E-07 1.5E-11 90.5 11.1 93 282-382 168-260 (549)
24 2z66_A Variable lymphocyte rec 98.5 5E-09 1.7E-13 96.6 -3.0 77 282-369 195-274 (306)
25 1ogq_A PGIP-2, polygalacturona 98.5 3E-08 1E-12 91.8 1.7 85 108-193 76-161 (313)
26 3t6q_A CD180 antigen; protein- 98.5 2.7E-08 9.2E-13 100.6 1.3 82 109-193 255-337 (606)
27 3zyj_A Leucine-rich repeat-con 98.5 6.6E-08 2.3E-12 93.9 4.0 199 108-327 88-295 (440)
28 3v47_A TOLL-like receptor 5B a 98.5 1.4E-08 4.9E-13 98.9 -1.0 86 284-384 321-406 (455)
29 3o53_A Protein LRIM1, AGAP0063 98.4 9.2E-08 3.2E-12 88.6 3.9 199 95-321 19-224 (317)
30 1h6u_A Internalin H; cell adhe 98.4 4.6E-07 1.6E-11 83.5 8.6 187 107-322 40-228 (308)
31 3oja_A Leucine-rich immune mol 98.4 6.5E-08 2.2E-12 95.2 2.8 185 109-321 35-224 (487)
32 2z66_A Variable lymphocyte rec 98.4 9.4E-09 3.2E-13 94.7 -3.1 233 122-384 19-259 (306)
33 3zyi_A Leucine-rich repeat-con 98.4 3.5E-08 1.2E-12 96.2 0.3 237 108-370 75-317 (452)
34 3vq2_A TLR4, TOLL-like recepto 98.4 2.7E-08 9.2E-13 100.7 -0.6 234 107-368 327-570 (606)
35 3rfs_A Internalin B, repeat mo 98.4 8.9E-08 3.1E-12 86.6 3.0 127 108-245 41-167 (272)
36 4ecn_A Leucine-rich repeat pro 98.4 4.7E-08 1.6E-12 102.2 1.2 144 108-263 548-704 (876)
37 2z63_A TOLL-like receptor 4, v 98.4 3.6E-08 1.2E-12 98.8 0.3 79 110-193 259-337 (570)
38 1ogq_A PGIP-2, polygalacturona 98.4 1.4E-07 4.9E-12 87.2 4.3 197 108-320 50-253 (313)
39 4fmz_A Internalin; leucine ric 98.4 3.5E-07 1.2E-11 85.6 7.0 252 80-382 88-342 (347)
40 1h6u_A Internalin H; cell adhe 98.4 3.7E-07 1.3E-11 84.2 6.8 166 107-297 62-228 (308)
41 1ozn_A Reticulon 4 receptor; N 98.4 2.1E-07 7.2E-12 84.7 5.0 183 122-320 23-210 (285)
42 4eco_A Uncharacterized protein 98.4 3.3E-08 1.1E-12 100.7 -0.6 144 108-263 305-464 (636)
43 3zyj_A Leucine-rich repeat-con 98.4 1.2E-07 4.2E-12 91.9 3.4 238 108-371 64-307 (440)
44 1z7x_W Ribonuclease inhibitor; 98.4 6.3E-09 2.1E-13 101.6 -5.9 283 81-384 4-324 (461)
45 3rfs_A Internalin B, repeat mo 98.4 3.9E-08 1.3E-12 89.0 -0.2 64 129-193 81-145 (272)
46 3bz5_A Internalin-J, INLJ; leu 98.4 4.5E-07 1.5E-11 88.4 7.2 179 108-320 64-242 (457)
47 2z81_A CD282 antigen, TOLL-lik 98.4 3.8E-07 1.3E-11 91.0 6.7 103 108-214 310-418 (549)
48 3o6n_A APL1; leucine-rich repe 98.4 7.3E-07 2.5E-11 84.9 8.2 193 108-320 93-304 (390)
49 4ezg_A Putative uncharacterize 98.3 1.5E-07 5.1E-12 80.7 2.7 58 132-193 43-100 (197)
50 1xku_A Decorin; proteoglycan, 98.3 2.6E-07 8.8E-12 86.0 4.1 192 108-321 76-273 (330)
51 3oja_B Anopheles plasmodium-re 98.3 2E-07 6.8E-12 94.2 3.6 126 108-245 75-202 (597)
52 3bz5_A Internalin-J, INLJ; leu 98.3 7.9E-07 2.7E-11 86.7 7.6 199 80-320 64-263 (457)
53 3t6q_A CD180 antigen; protein- 98.3 9.2E-08 3.1E-12 96.7 1.0 240 108-373 325-577 (606)
54 1z7x_W Ribonuclease inhibitor; 98.3 8.5E-09 2.9E-13 100.6 -6.8 277 81-376 143-458 (461)
55 4ecn_A Leucine-rich repeat pro 98.3 1.5E-07 5.1E-12 98.5 2.2 189 108-320 491-706 (876)
56 3oja_B Anopheles plasmodium-re 98.3 9.5E-07 3.2E-11 89.2 7.6 83 108-193 99-183 (597)
57 2z62_A TOLL-like receptor 4, v 98.3 1.6E-07 5.5E-12 85.0 1.7 200 108-325 28-238 (276)
58 4ezg_A Putative uncharacterize 98.3 1.9E-07 6.5E-12 80.1 1.7 81 108-193 44-124 (197)
59 1p9a_G Platelet glycoprotein I 98.2 2E-07 6.7E-12 85.2 1.2 14 154-167 53-66 (290)
60 3goz_A Leucine-rich repeat-con 98.2 2.6E-08 8.9E-13 94.2 -4.8 93 286-384 196-295 (362)
61 1xku_A Decorin; proteoglycan, 98.2 6.5E-07 2.2E-11 83.2 4.6 219 80-322 76-304 (330)
62 2ca6_A RAN GTPase-activating p 98.2 8.2E-08 2.8E-12 91.5 -1.6 177 80-263 32-251 (386)
63 4eco_A Uncharacterized protein 98.2 5.2E-07 1.8E-11 91.8 3.7 195 108-320 330-545 (636)
64 3vq2_A TLR4, TOLL-like recepto 98.2 1.2E-06 4.1E-11 88.5 6.2 197 108-320 32-238 (606)
65 3rgz_A Protein brassinosteroid 98.2 7.8E-07 2.7E-11 92.5 5.0 182 122-320 89-278 (768)
66 2ell_A Acidic leucine-rich nuc 98.2 2.2E-07 7.4E-12 77.5 0.2 129 108-244 24-156 (168)
67 1h6t_A Internalin B; cell adhe 98.2 1.1E-06 3.7E-11 80.3 4.8 120 108-244 46-165 (291)
68 3g06_A SSPH2 (leucine-rich rep 98.2 3.8E-06 1.3E-10 84.8 9.1 53 108-168 61-113 (622)
69 2o6q_A Variable lymphocyte rec 98.2 5.1E-07 1.7E-11 81.5 2.3 180 108-324 37-218 (270)
70 3v47_A TOLL-like receptor 5B a 98.2 4.2E-07 1.4E-11 88.4 1.9 143 206-370 275-422 (455)
71 1wwl_A Monocyte differentiatio 98.2 5.2E-07 1.8E-11 83.3 2.3 37 132-168 94-133 (312)
72 2z63_A TOLL-like receptor 4, v 98.2 1.5E-07 5.1E-12 94.4 -1.5 146 107-263 324-477 (570)
73 2ft3_A Biglycan; proteoglycan, 98.2 2.7E-07 9.3E-12 85.9 0.4 194 108-322 78-275 (332)
74 2xwt_C Thyrotropin receptor; s 98.2 2.5E-06 8.7E-11 75.3 6.7 34 286-320 179-214 (239)
75 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 2.4E-05 8.3E-10 78.2 14.3 38 283-320 374-412 (562)
76 1m9s_A Internalin B; cell inva 98.1 8E-07 2.7E-11 89.5 3.4 121 108-245 43-163 (605)
77 3j0a_A TOLL-like receptor 5; m 98.1 4.3E-06 1.5E-10 87.9 9.0 85 108-193 73-160 (844)
78 4glp_A Monocyte differentiatio 98.1 5.5E-07 1.9E-11 83.0 1.9 216 82-320 66-303 (310)
79 2z7x_B TOLL-like receptor 1, v 98.1 3.4E-06 1.2E-10 83.4 7.3 128 124-263 14-145 (520)
80 3m19_A Variable lymphocyte rec 98.1 7.7E-07 2.6E-11 79.3 2.4 68 123-193 27-95 (251)
81 2je0_A Acidic leucine-rich nuc 98.1 1.2E-07 4.2E-12 77.3 -2.8 102 109-214 18-121 (149)
82 1ziw_A TOLL-like receptor 3; i 98.1 1.1E-06 3.8E-11 90.1 3.6 83 108-192 381-465 (680)
83 1xeu_A Internalin C; cellular 98.1 1.4E-06 4.9E-11 78.2 3.4 103 129-246 37-139 (263)
84 2z7x_B TOLL-like receptor 1, v 98.1 4.8E-06 1.6E-10 82.4 7.3 62 132-193 323-386 (520)
85 2ft3_A Biglycan; proteoglycan, 98.1 1.1E-06 3.7E-11 81.8 2.4 194 108-322 102-305 (332)
86 3goz_A Leucine-rich repeat-con 98.0 8.1E-08 2.8E-12 90.7 -6.0 36 286-321 225-263 (362)
87 3a79_B TLR6, VLRB.59, TOLL-lik 98.0 1.3E-05 4.3E-10 80.3 9.7 104 134-246 332-439 (562)
88 2ra8_A Uncharacterized protein 98.0 1.6E-06 5.5E-11 81.5 2.5 139 152-320 135-288 (362)
89 3e4g_A ATP synthase subunit S, 98.0 1.4E-06 4.8E-11 72.5 1.8 97 122-225 50-153 (176)
90 3oja_A Leucine-rich immune mol 98.0 5.1E-06 1.7E-10 81.6 6.0 163 131-321 32-201 (487)
91 3g06_A SSPH2 (leucine-rich rep 98.0 2.2E-05 7.4E-10 79.3 10.1 113 108-246 40-152 (622)
92 3o53_A Protein LRIM1, AGAP0063 98.0 4.8E-06 1.6E-10 76.9 4.9 164 131-321 32-201 (317)
93 1ziw_A TOLL-like receptor 3; i 97.9 7.6E-07 2.6E-11 91.3 -1.5 35 108-143 329-363 (680)
94 2ell_A Acidic leucine-rich nuc 97.9 1.9E-06 6.4E-11 71.7 1.0 104 132-245 23-130 (168)
95 1h6t_A Internalin B; cell adhe 97.9 5.3E-06 1.8E-10 75.7 3.7 123 107-246 67-189 (291)
96 1m9s_A Internalin B; cell inva 97.9 4.5E-06 1.6E-10 84.0 3.0 139 108-263 65-204 (605)
97 2o6s_A Variable lymphocyte rec 97.9 3.1E-06 1.1E-10 73.0 1.3 88 123-214 20-108 (208)
98 4glp_A Monocyte differentiatio 97.9 9.7E-06 3.3E-10 74.6 4.6 63 131-193 143-209 (310)
99 2z62_A TOLL-like receptor 4, v 97.9 1.4E-06 4.7E-11 78.8 -1.2 115 122-245 19-134 (276)
100 1p9a_G Platelet glycoprotein I 97.8 4.5E-06 1.5E-10 76.1 1.6 129 108-247 31-160 (290)
101 1wwl_A Monocyte differentiatio 97.8 2.3E-05 7.8E-10 72.1 6.3 61 133-193 149-213 (312)
102 2e31_A FBS1, F-box only protei 97.8 9E-06 3.1E-10 73.2 3.3 36 4-39 50-86 (297)
103 3m19_A Variable lymphocyte rec 97.8 3.9E-06 1.3E-10 74.7 0.6 128 108-244 35-164 (251)
104 3j0a_A TOLL-like receptor 5; m 97.8 5.3E-05 1.8E-09 79.6 9.3 179 133-320 266-460 (844)
105 3l2o_B F-box only protein 4; s 97.8 4.1E-06 1.4E-10 74.6 0.5 35 4-38 4-38 (312)
106 2ra8_A Uncharacterized protein 97.7 6.2E-06 2.1E-10 77.5 0.8 223 65-320 92-339 (362)
107 2je0_A Acidic leucine-rich nuc 97.7 2.7E-06 9.1E-11 69.2 -1.6 107 132-247 16-125 (149)
108 3cvr_A Invasion plasmid antige 97.7 0.00012 4.1E-09 73.0 9.9 70 132-214 99-168 (571)
109 1jl5_A Outer protein YOPM; leu 97.6 0.00013 4.6E-09 70.8 8.5 33 177-214 233-265 (454)
110 2o6s_A Variable lymphocyte rec 97.6 1.2E-05 4.1E-10 69.2 0.8 102 109-214 29-132 (208)
111 2v9t_B SLIT homolog 2 protein 97.6 1.7E-05 6E-10 69.0 1.5 154 122-311 23-181 (220)
112 3e6j_A Variable lymphocyte rec 97.6 1.4E-05 4.8E-10 70.1 0.8 131 123-263 32-166 (229)
113 3e6j_A Variable lymphocyte rec 97.6 2.7E-05 9.2E-10 68.2 2.5 149 135-298 21-171 (229)
114 1ds9_A Outer arm dynein; leuci 97.5 1.4E-06 4.7E-11 74.7 -6.0 63 128-193 43-105 (198)
115 4g8a_A TOLL-like receptor 4; l 97.5 2.6E-05 8.9E-10 78.8 2.3 130 108-247 52-185 (635)
116 3v7d_B Cell division control p 97.5 2.3E-05 8E-10 75.8 0.9 40 2-41 12-51 (464)
117 4ay9_X Follicle-stimulating ho 97.5 0.00016 5.5E-09 67.6 6.6 16 178-193 101-116 (350)
118 3e4g_A ATP synthase subunit S, 97.4 7.8E-05 2.7E-09 61.9 3.5 84 108-193 61-151 (176)
119 2v9t_B SLIT homolog 2 protein 97.4 2.3E-05 7.9E-10 68.2 0.4 129 108-245 32-162 (220)
120 1jl5_A Outer protein YOPM; leu 97.4 0.00019 6.5E-09 69.7 6.6 117 108-245 131-247 (454)
121 2v70_A SLIT-2, SLIT homolog 2 97.4 3.4E-05 1.2E-09 67.1 0.6 30 234-263 128-160 (220)
122 2v70_A SLIT-2, SLIT homolog 2 97.4 7.3E-05 2.5E-09 65.0 2.8 67 124-193 25-93 (220)
123 1a9n_A U2A', U2A'; complex (nu 97.4 2.4E-05 8.1E-10 65.5 -0.4 80 130-214 16-96 (176)
124 1xeu_A Internalin C; cellular 97.4 3.3E-05 1.1E-09 69.2 0.5 120 108-245 41-160 (263)
125 3un9_A NLR family member X1; l 97.3 1.3E-06 4.5E-11 82.6 -9.6 40 284-323 209-251 (372)
126 2xwt_C Thyrotropin receptor; s 97.3 3.3E-05 1.1E-09 68.0 -0.2 168 107-296 54-236 (239)
127 4g8a_A TOLL-like receptor 4; l 97.3 0.00028 9.6E-09 71.1 6.6 114 122-244 43-157 (635)
128 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.00012 4.2E-09 70.4 3.2 37 2-38 16-52 (445)
129 2o6r_A Variable lymphocyte rec 97.1 9.9E-05 3.4E-09 61.6 1.1 88 123-214 20-108 (177)
130 1p22_A F-BOX/WD-repeat protein 97.1 6.8E-05 2.3E-09 72.1 -0.1 37 2-38 8-48 (435)
131 2wfh_A SLIT homolog 2 protein 97.1 8.7E-05 3E-09 63.1 0.4 68 123-193 23-90 (193)
132 2xot_A Amphoterin-induced prot 97.1 7.9E-05 2.7E-09 70.0 0.0 67 124-193 32-100 (361)
133 1a9n_A U2A', U2A'; complex (nu 97.1 0.00012 4.1E-09 61.1 1.1 104 134-245 43-150 (176)
134 1w8a_A SLIT protein; signaling 97.0 0.0001 3.4E-09 62.6 0.2 69 122-193 20-90 (192)
135 2xot_A Amphoterin-induced prot 97.0 0.00044 1.5E-08 64.9 4.1 131 108-247 39-175 (361)
136 3cvr_A Invasion plasmid antige 96.9 0.0016 5.5E-08 64.9 7.9 174 107-321 58-240 (571)
137 1dce_A Protein (RAB geranylger 96.9 0.00024 8.2E-09 71.0 1.3 79 109-193 442-520 (567)
138 4ay9_X Follicle-stimulating ho 96.8 0.0071 2.4E-07 56.2 10.4 33 134-166 31-64 (350)
139 4b8c_D Glucose-repressible alc 96.7 0.00017 6E-09 74.2 -1.2 110 126-245 217-326 (727)
140 4b8c_D Glucose-repressible alc 96.7 0.00021 7.1E-09 73.7 -0.9 106 108-224 224-329 (727)
141 1dce_A Protein (RAB geranylger 96.6 0.00059 2E-08 68.1 1.9 84 107-193 462-545 (567)
142 2wfh_A SLIT homolog 2 protein 96.6 0.00067 2.3E-08 57.5 2.0 83 108-193 31-114 (193)
143 2o6r_A Variable lymphocyte rec 96.5 0.00094 3.2E-08 55.5 2.0 103 108-214 28-132 (177)
144 1ds9_A Outer arm dynein; leuci 96.4 0.00095 3.2E-08 56.7 1.7 105 107-223 47-152 (198)
145 3g39_A Variable lymphocyte rec 96.4 0.0014 4.8E-08 54.2 2.6 69 122-193 21-90 (170)
146 1w8a_A SLIT protein; signaling 96.3 0.00065 2.2E-08 57.5 -0.2 101 136-244 11-111 (192)
147 2r9u_A Variable lymphocyte rec 96.2 0.0021 7.1E-08 53.4 2.6 68 123-193 25-93 (174)
148 1io0_A Tropomodulin; LRR prote 96.1 0.0028 9.5E-08 53.2 3.0 34 155-188 92-128 (185)
149 3sb4_A Hypothetical leucine ri 96.1 0.0021 7.3E-08 59.3 2.2 78 234-320 225-306 (329)
150 2r9u_A Variable lymphocyte rec 95.9 0.0046 1.6E-07 51.3 3.4 83 108-193 33-117 (174)
151 3un9_A NLR family member X1; l 95.8 0.00012 4.1E-09 69.1 -7.6 158 81-245 73-249 (372)
152 3g39_A Variable lymphocyte rec 95.6 0.0071 2.4E-07 49.9 3.4 83 108-193 30-114 (170)
153 2ifg_A High affinity nerve gro 95.6 0.0043 1.5E-07 57.5 2.1 88 123-214 22-111 (347)
154 1io0_A Tropomodulin; LRR prote 93.6 0.016 5.3E-07 48.5 0.6 62 131-192 91-162 (185)
155 4fdw_A Leucine rich hypothetic 93.1 0.017 6E-07 54.7 0.1 36 282-319 296-331 (401)
156 3rw6_A Nuclear RNA export fact 93.0 0.032 1.1E-06 49.6 1.7 38 130-168 193-232 (267)
157 2ifg_A High affinity nerve gro 93.0 0.052 1.8E-06 50.1 3.2 82 108-193 31-115 (347)
158 3sb4_A Hypothetical leucine ri 91.3 0.2 6.7E-06 45.8 4.9 33 132-164 225-258 (329)
159 4fdw_A Leucine rich hypothetic 89.3 0.29 9.8E-06 46.3 4.3 185 108-320 157-354 (401)
160 3rw6_A Nuclear RNA export fact 88.9 0.16 5.5E-06 45.0 2.1 40 154-193 168-208 (267)
161 1pgv_A TMD-1, tropomodulin TMD 74.1 1.5 5.2E-05 36.7 2.3 59 133-191 70-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 70.6 0.83 2.8E-05 38.3 -0.2 60 131-190 96-166 (197)
163 3rfe_A Platelet glycoprotein I 64.2 6.4 0.00022 30.2 3.8 43 124-168 24-67 (130)
164 4gt6_A Cell surface protein; l 57.9 7.6 0.00026 36.1 3.9 15 249-263 350-364 (394)
165 4gt6_A Cell surface protein; l 43.3 24 0.00083 32.5 4.8 79 129-214 284-365 (394)
166 4h09_A Hypothetical leucine ri 36.4 19 0.00064 33.0 2.8 55 130-189 260-318 (379)
167 4fs7_A Uncharacterized protein 33.8 26 0.00089 32.3 3.3 80 128-214 292-374 (394)
168 4fs7_A Uncharacterized protein 30.0 45 0.0016 30.6 4.3 58 129-191 316-376 (394)
169 4h09_A Hypothetical leucine ri 20.7 85 0.0029 28.4 4.2 81 128-214 235-318 (379)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=7.7e-20 Score=185.26 Aligned_cols=218 Identities=17% Similarity=0.147 Sum_probs=116.6
Q ss_pred ccCC----CCChHHHHHHhcCC-CcccchhhcccchhhHHHHhccCeeeeecCCCCCCCCccccccchHHHHHHHHHhcc
Q 046658 3 YRIS----DLPDAILGRIVSFL-PTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRT 77 (413)
Q Consensus 3 D~is----~LPd~lL~~Ils~L-~~~d~~r~s~lSrrWr~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~ 77 (413)
||++ .||||+|.+||+|| +++|+++++.|||||++++...+...+....+ ......++.+.
T Consensus 7 ~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~--------------~~~~~~~~~~~ 72 (592)
T 3ogk_B 7 KRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCY--------------TATPDRLSRRF 72 (592)
T ss_dssp -----CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGG--------------GSCHHHHHHHC
T ss_pred hhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeecc--------------ccChHHHHHhC
Confidence 4555 89999999999999 89999999999999999865544221111111 01122232222
Q ss_pred CCCCcceEEeeecCC---------CCcccHHHHHHHHH--hCCcEEEEEEECcceeeecCccccc-ccc-ccEEEeCCcc
Q 046658 78 HPGNIDSFCLHCSRP---------IDLSSVNFWLSSAL--MQSVRELQLYLGQQNRVQLLETIYT-STT-LEVLKLDSDC 144 (413)
Q Consensus 78 ~~~~l~~l~l~~~~~---------~~~~~~~~wl~~a~--~~~v~~L~l~~~~~~~~~lp~~~~~-~~~-L~~L~L~~~~ 144 (413)
+.++++.+..... ........|+.... .+++++|+++...-.... +..+.. +++ |++|+|.+|.
T Consensus 73 --~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 73 --PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD-LDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp --TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHH-HHHHHHHHGGGCCEEEEESCE
T ss_pred --CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHH-HHHHHHhccccCcEEECcCCC
Confidence 3378888765321 11233455665544 257777777744211111 111212 334 7777777664
Q ss_pred cccc---CCCcccCCcccEEEeeeeEeCh---hhHHHHhccCCccceEEEEeeecC----CCCcceEEEecCccceeEEE
Q 046658 145 VINA---PCVGTCFPTMKVLHMQLQNLDN---SLTEKMFSACPCLEELSVHAYFDA----DDSRTNFIIASSTLKHFTLT 214 (413)
Q Consensus 145 ~~~~---~~~~~~~~~L~~L~L~~~~~~~---~~l~~l~~~cp~Le~L~l~~~~~~----~~~~~~~~i~~~~L~~L~i~ 214 (413)
.... +....++++|++|+|.++.+++ ..+..+...||.|++|.+.++... ..+.. +...+++|+.|.+.
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVG 228 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECS
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEecc
Confidence 2211 1122356777777777776622 225566667777777777655441 01111 11234667777776
Q ss_pred eeecCCCCCCCCcceEEEecCceeEEEEee
Q 046658 215 VVIDTDNHFSEIDHTVMLKAPNLQCLHIIA 244 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~ 244 (413)
+|.... ........|+|++|.+..
T Consensus 229 -----~~~~~~-l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 229 -----DFEILE-LVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp -----SCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred -----CccHHH-HHHHHhhhhHHHhhcccc
Confidence 654321 112222456666666653
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=5.3e-21 Score=193.85 Aligned_cols=220 Identities=15% Similarity=0.161 Sum_probs=128.2
Q ss_pred CccCCCCChHHHHHHhcCCC-cccchhhcccchhhHHHHhc-cCeeeeecCCCCCCCCccccccchHHHHHHHHHhccCC
Q 046658 2 GYRISDLPDAILGRIVSFLP-TKNTVATSVLSRRWKHVWTS-LANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHP 79 (413)
Q Consensus 2 ~D~is~LPd~lL~~Ils~L~-~~d~~r~s~lSrrWr~l~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~ 79 (413)
.|+++.||||+|.+||+||+ .+|+++++.|||||+++... ...+.+...... . ....+ +..
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--------~-------~~~~~--~~~ 65 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV--------S-------PATVI--RRF 65 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--------C-------HHHHH--HHC
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--------C-------HHHHH--hhC
Confidence 58999999999999999999 99999999999999988322 223444322110 0 01112 122
Q ss_pred CCcceEEeeecCCCC---------cccHHHHHHHHHh--CCcEEEEEEECcceeeecCccccccccccEEEeCCcccc-c
Q 046658 80 GNIDSFCLHCSRPID---------LSSVNFWLSSALM--QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVI-N 147 (413)
Q Consensus 80 ~~l~~l~l~~~~~~~---------~~~~~~wl~~a~~--~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~-~ 147 (413)
+.++++.+....... ...+..|+..... .++++|+++...-....+......|++|++|+|.+|... +
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 458888888753210 1345677776543 578888888543211111111125788888888887322 2
Q ss_pred --cCCCcccCCcccEEEeeeeEeC---hhhHHHHhccCCccceEEEEeeec---CCCCcceEEEecCccceeEEEeeecC
Q 046658 148 --APCVGTCFPTMKVLHMQLQNLD---NSLTEKMFSACPCLEELSVHAYFD---ADDSRTNFIIASSTLKHFTLTVVIDT 219 (413)
Q Consensus 148 --~~~~~~~~~~L~~L~L~~~~~~---~~~l~~l~~~cp~Le~L~l~~~~~---~~~~~~~~~i~~~~L~~L~i~~~~~~ 219 (413)
++....++++|++|+|.++.++ ...+..+...||.|++|.+.+|.. ...+.. +...+++|++|.+.
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-l~~~~~~L~~L~L~----- 219 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER-LVTRCPNLKSLKLN----- 219 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH-HHHHCTTCCEEECC-----
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH-HHHhCCCCcEEecC-----
Confidence 2212346888888888877762 334666666788888888887752 011122 22235788888888
Q ss_pred CCCCCCCcceEEEecCceeEEEEee
Q 046658 220 DNHFSEIDHTVMLKAPNLQCLHIIA 244 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~P~L~~L~~~~ 244 (413)
+|....+.......+|+|+.|.+.+
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred CCCcHHHHHHHHhcCCcceEccccc
Confidence 7743322222223567777776544
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=1.4e-19 Score=170.21 Aligned_cols=232 Identities=16% Similarity=0.142 Sum_probs=125.4
Q ss_pred cCCCCChHHHHHHhcCCCcccchhhcccchhhHHHHhc---cCeeeeecCCCCCCCCccccccchHHHHHHHHHhccCCC
Q 046658 4 RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTS---LANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHPG 80 (413)
Q Consensus 4 ~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~~---~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~ 80 (413)
.++.||||++.+||++|+.+|+++++.|||+|+.+... ...+++....+ . ...+...+. +
T Consensus 8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~---------~----~~~~~~~~~----~ 70 (336)
T 2ast_B 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL---------H----PDVTGRLLS----Q 70 (336)
T ss_dssp CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC---------C----HHHHHHHHH----T
T ss_pred ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC---------C----HHHHHhhhh----c
Confidence 48999999999999999999999999999999998642 23444433222 1 112222221 1
Q ss_pred CcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCcccccc-CCCcccCCccc
Q 046658 81 NIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINA-PCVGTCFPTMK 159 (413)
Q Consensus 81 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~ 159 (413)
.++.+.+....-... ... .....++++|+++.+.-....+|..+..+++|++|+|.+|...+. +.....+++|+
T Consensus 71 ~l~~L~l~~n~l~~~--~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 71 GVIAFRCPRSFMDQP--LAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TCSEEECTTCEECSC--CCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred cceEEEcCCcccccc--chh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 255555543211000 000 011245666666544321122555556667777777777644321 11344567777
Q ss_pred EEEeeee-EeChhhHHHHhccCCccceEEEEee-ecCC-CCcceEEEecC-ccceeEEEeeecCCCC--CC-CCcceEEE
Q 046658 160 VLHMQLQ-NLDNSLTEKMFSACPCLEELSVHAY-FDAD-DSRTNFIIASS-TLKHFTLTVVIDTDNH--FS-EIDHTVML 232 (413)
Q Consensus 160 ~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~~-~~~~-~~~~~~~i~~~-~L~~L~i~~~~~~~~~--~~-~~~~~~~~ 232 (413)
+|+|.++ .+++..+..++..||.|++|.+.+| ...+ .+.. .....| +|++|.+. +|. .. .+......
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~-----~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLS-----GYRKNLQKSDLSTLVR 219 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECC-----SCGGGSCHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeC-----CCcccCCHHHHHHHHh
Confidence 7777777 3466666666777777777777777 3310 0111 112345 67777776 663 11 10111122
Q ss_pred ecCceeEEEEeeccc-c---eeeeecCCCceEEEE
Q 046658 233 KAPNLQCLHIIADRL-G---SYVLEEMHCLHEAVV 263 (413)
Q Consensus 233 ~~P~L~~L~~~~~~~-~---~~~~~~~~~L~~~~i 263 (413)
.+|+|++|+++++.. . ...+..+++|+.+++
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 456667766666441 1 223344555555444
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.09 E-value=2.1e-10 Score=107.08 Aligned_cols=202 Identities=17% Similarity=0.155 Sum_probs=127.9
Q ss_pred HHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCC
Q 046658 102 LSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACP 181 (413)
Q Consensus 102 l~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp 181 (413)
+..+...+++.|++....- ..+|..++.+++|++|+|.++.+...|.....+++|++|+|.++.+. .+..-+..++
T Consensus 75 l~~~~~~~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~ 150 (328)
T 4fcg_A 75 LEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLN 150 (328)
T ss_dssp HHHHTSTTCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCT
T ss_pred HhcccccceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCc
Confidence 3344447888888886653 37888888999999999999877777756788999999999998775 3445578899
Q ss_pred ccceEEEEeeecCCCCcceE--------EEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc--eee
Q 046658 182 CLEELSVHAYFDADDSRTNF--------IIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG--SYV 251 (413)
Q Consensus 182 ~Le~L~l~~~~~~~~~~~~~--------~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~--~~~ 251 (413)
.|+.|.+.+|.....+...+ ....++|+.|.+. ++.... ........++|++|+++++... ...
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~-----~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-----WTGIRS-LPASIANLQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEE-----EECCCC-CCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECc-----CCCcCc-chHhhcCCCCCCEEEccCCCCCcCchh
Confidence 99999999986612122101 1136788888888 665431 1111224677888888875443 223
Q ss_pred eecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 252 LEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 252 ~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
+..+++|+.+++.... +.......+..+++|++|.+..+... ..++..+..+|+|+.|.+..
T Consensus 225 l~~l~~L~~L~Ls~n~------~~~~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCT------ALRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp GGGCTTCCEEECTTCT------TCCBCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTT
T ss_pred hccCCCCCEEECcCCc------chhhhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCC
Confidence 5666777766552200 00000112335667777777665432 12222356777777777776
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.95 E-value=5e-10 Score=113.02 Aligned_cols=238 Identities=12% Similarity=0.089 Sum_probs=139.1
Q ss_pred ccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecC
Q 046658 127 ETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASS 206 (413)
Q Consensus 127 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~ 206 (413)
..+..+++|++|.+.++.....|.....+++|++|+|.++.+++..+..++..||+|++|.+.++.....+.. +.-.++
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~ 342 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-LAQYCK 342 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH-HHHHCT
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH-HHHhCC
Confidence 3444556666666665433334434557889999999988887777888889999999999985544122222 222457
Q ss_pred ccceeEEEeeecCC----------CCCCCC--cceEEEecCceeEEEEeecccc---eeeee-cCCCceEEEEEeeccee
Q 046658 207 TLKHFTLTVVIDTD----------NHFSEI--DHTVMLKAPNLQCLHIIADRLG---SYVLE-EMHCLHEAVVHISYAEW 270 (413)
Q Consensus 207 ~L~~L~i~~~~~~~----------~~~~~~--~~~~~~~~P~L~~L~~~~~~~~---~~~~~-~~~~L~~~~i~~~~~~l 270 (413)
+|++|.+. + |....+ ...+...+|+|++|.+...... ...+. .+++|+.+.+.....
T Consensus 343 ~L~~L~L~-----~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~-- 415 (592)
T 3ogk_B 343 QLKRLRIE-----RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR-- 415 (592)
T ss_dssp TCCEEEEE-----CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC--
T ss_pred CCCEEEee-----cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC--
Confidence 89999998 6 544321 1111224789999988553332 11233 378888877742100
Q ss_pred EEEeccc--C---cccCCCCCCeeEEEEEeCCC--ChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCccc
Q 046658 271 SQAVDQC--Y---DNFCPSFSELTFLEVKLAGS--GWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCL 343 (413)
Q Consensus 271 ~l~~~~~--~---~~~~p~~~~L~~L~l~~~~~--~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~ 343 (413)
.-.+... + ...+..+++|++|.+..|.. ....+..+...+|+|+.|.+.....+..+. ......|
T Consensus 416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-------~~~~~~~- 487 (592)
T 3ogk_B 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL-------MEFSRGC- 487 (592)
T ss_dssp CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH-------HHHHTCC-
T ss_pred CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH-------HHHHhcC-
Confidence 0000000 0 00012367888888887553 355666677778888888887632211100 0001123
Q ss_pred ccceeEEEEEeecCCHhHHHHHHHHHhcCCCCceEEEEeec
Q 046658 344 LQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKA 384 (413)
Q Consensus 344 ~~~L~~v~i~~~~~~~~~~~l~~~ll~~a~~Le~l~i~~~~ 384 (413)
.+|+++.+.+..-. ..-+..++.+.+.|+.+.+..+.
T Consensus 488 -~~L~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 488 -PNLQKLEMRGCCFS---ERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp -TTCCEEEEESCCCB---HHHHHHHHHHCSSCCEEEEESCB
T ss_pred -cccCeeeccCCCCc---HHHHHHHHHhcCccCeeECcCCc
Confidence 67888888766521 12234455678888988888765
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.85 E-value=5e-09 Score=105.66 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=74.9
Q ss_pred CCcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcc-eeeecCccccccccccEEEeCCccccccC-----CCcc
Q 046658 80 GNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDSDCVINAP-----CVGT 153 (413)
Q Consensus 80 ~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~~-----~~~~ 153 (413)
+.++.+.+.... .....+..... ...++++|++..+.. ....++.....|++|++|+|.+|.+.+.. ....
T Consensus 105 ~~L~~L~L~~~~-~~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 105 TWLEEIRLKRMV-VTDDCLELIAK--SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp TTCCEEEEESCB-CCHHHHHHHHH--HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCeEEeeCcE-EcHHHHHHHHH--hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 358999998654 33322222221 247899999986632 22335555557899999999988644321 1234
Q ss_pred cCCcccEEEeeeeE--eChhhHHHHhccCCccceEEEEee
Q 046658 154 CFPTMKVLHMQLQN--LDNSLTEKMFSACPCLEELSVHAY 191 (413)
Q Consensus 154 ~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~~ 191 (413)
.+++|++|+|.++. +++..+..++..||.|+.|.+.+|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 67899999999886 477888888888999999999887
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.80 E-value=8.7e-11 Score=109.89 Aligned_cols=107 Identities=12% Similarity=0.066 Sum_probs=53.2
Q ss_pred ccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeE
Q 046658 133 TTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFT 212 (413)
Q Consensus 133 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~ 212 (413)
+.++.|++.++.....++....+++|++|+|.++.+++..+..++..||.|++|.+.+|...+.... .....++|++|.
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEE
Confidence 4566666666544443334445666666666666665555556666666666666666644100000 001235566666
Q ss_pred EEeeecCCCCCCCC--cceEEEecCceeEEEEeec
Q 046658 213 LTVVIDTDNHFSEI--DHTVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 213 i~~~~~~~~~~~~~--~~~~~~~~P~L~~L~~~~~ 245 (413)
+. +|....+ .......+|+|++|++.++
T Consensus 149 L~-----~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 149 LS-----GCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CT-----TCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CC-----CCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 66 5522110 1111223556666666553
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.77 E-value=3.9e-09 Score=98.47 Aligned_cols=228 Identities=12% Similarity=0.047 Sum_probs=150.3
Q ss_pred HHHHhccCCCCcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC
Q 046658 71 QTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC 150 (413)
Q Consensus 71 ~~~L~~~~~~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~ 150 (413)
...+.....+.+..+.+....-. .+...+.. -.+++.|+++...-. .+|..+..+++|++|+|.+|.+...|.
T Consensus 72 ~~~l~~~~~~~l~~L~L~~n~l~---~lp~~l~~--l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~ 144 (328)
T 4fcg_A 72 ADLLEDATQPGRVALELRSVPLP---QFPDQAFR--LSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPA 144 (328)
T ss_dssp HHHHHHHTSTTCCEEEEESSCCS---SCCSCGGG--GTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCG
T ss_pred HHHHhcccccceeEEEccCCCch---hcChhhhh--CCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcH
Confidence 33343333455888888864421 12121211 368999999876543 788888899999999999997777776
Q ss_pred CcccCCcccEEEeeeeEeChh---hH-----HHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCC
Q 046658 151 VGTCFPTMKVLHMQLQNLDNS---LT-----EKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNH 222 (413)
Q Consensus 151 ~~~~~~~L~~L~L~~~~~~~~---~l-----~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~ 222 (413)
....+++|++|+|.++..... .+ ...+.+++.|++|.+.+|.. ..+.. .....++|+.|.+. ++.
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~-~l~~l~~L~~L~L~-----~N~ 217 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPA-SIANLQNLKSLKIR-----NSP 217 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCG-GGGGCTTCCEEEEE-----SSC
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchH-hhcCCCCCCEEEcc-----CCC
Confidence 678899999999999755211 11 11234699999999999987 33333 11235789999999 887
Q ss_pred CCCCcceEEEecCceeEEEEeeccc-c--eeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCC
Q 046658 223 FSEIDHTVMLKAPNLQCLHIIADRL-G--SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG 299 (413)
Q Consensus 223 ~~~~~~~~~~~~P~L~~L~~~~~~~-~--~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~ 299 (413)
...- .......|+|++|+++++.. + ...+..+++|+.+++.... ....-...+..+++|++|+|+.|..
T Consensus 218 l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~------~~~~~p~~~~~l~~L~~L~L~~n~~- 289 (328)
T 4fcg_A 218 LSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS------NLLTLPLDIHRLTQLEKLDLRGCVN- 289 (328)
T ss_dssp CCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT------TCCBCCTTGGGCTTCCEEECTTCTT-
T ss_pred CCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC------chhhcchhhhcCCCCCEEeCCCCCc-
Confidence 5431 11123568999999998544 2 3356778889887763210 0000011233677899999987653
Q ss_pred hhhHHHHHhcCCCCceEEecc
Q 046658 300 WRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 300 ~~~l~~ll~~~p~L~~L~i~~ 320 (413)
...++..+..+|+|+.+.+..
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCG
T ss_pred hhhccHHHhhccCceEEeCCH
Confidence 334555678899999998876
No 9
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.73 E-value=4.8e-08 Score=91.90 Aligned_cols=173 Identities=14% Similarity=0.181 Sum_probs=77.2
Q ss_pred cccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeE
Q 046658 134 TLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFT 212 (413)
Q Consensus 134 ~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~ 212 (413)
+|++|++.++.....+. ....+++|++|+|.+..++.- ....+..++.|++|.+.++.. ..+........++|+.|.
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEE
Confidence 45555555554444432 244455555555554444211 011234455555555555544 111110001124555555
Q ss_pred EEeeecCCCCCCCCcc-eEEEecCceeEEEEeecc-cce---eeeecCCCceEEEEEeecceeEEEecccCcccCCCCCC
Q 046658 213 LTVVIDTDNHFSEIDH-TVMLKAPNLQCLHIIADR-LGS---YVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSE 287 (413)
Q Consensus 213 i~~~~~~~~~~~~~~~-~~~~~~P~L~~L~~~~~~-~~~---~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~ 287 (413)
+. ++....-.. ...-..++|++|++.++. ... ..+..+++|+.+++.... +.- .....+..+++
T Consensus 131 L~-----~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~----~~~~~l~~l~~ 199 (353)
T 2z80_A 131 LL-----GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD--LQS----YEPKSLKSIQN 199 (353)
T ss_dssp CT-----TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCE----ECTTTTTTCSE
T ss_pred CC-----CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC--cCc----cCHHHHhcccc
Confidence 55 443221000 011234556666665531 221 123445555555543210 000 00122445667
Q ss_pred eeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 288 LTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 288 L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
|++|.+..+... .....++..+++|+.|.+..
T Consensus 200 L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 200 VSHLILHMKQHI-LLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp EEEEEEECSCST-THHHHHHHHTTTEEEEEEES
T ss_pred CCeecCCCCccc-cchhhhhhhcccccEEECCC
Confidence 888888776532 11223455678888888776
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.69 E-value=1.1e-08 Score=96.05 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=41.7
Q ss_pred CCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeecCCHhHHH
Q 046658 284 SFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQR 363 (413)
Q Consensus 284 ~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~~~ 363 (413)
.+++|++|.+..+.... + ..+..+|+|+.|.+....... + .... ...+|+.+.+.+-.-...
T Consensus 241 ~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~-------~---~~~~--~l~~L~~L~L~~n~l~~~--- 302 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISD-------I---SVLN--NLSQLNSLFLNNNQLGNE--- 302 (347)
T ss_dssp TCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCC-------C---GGGG--GCTTCSEEECCSSCCCGG---
T ss_pred cCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCC-------C---hhhc--CCCCCCEEECcCCcCCCc---
Confidence 45556666665543321 1 124556666666665521110 0 0111 126778877765432211
Q ss_pred HHHHHHhcCCCCceEEEEeecc
Q 046658 364 VIEYFLQQCKCLEVMIINCKAL 385 (413)
Q Consensus 364 l~~~ll~~a~~Le~l~i~~~~~ 385 (413)
....+...+.|+++.+..+.-
T Consensus 303 -~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 303 -DMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp -GHHHHHTCTTCSEEECCSSSC
T ss_pred -ChhHhhccccCCEEEccCCcc
Confidence 123346678888888877553
No 11
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.69 E-value=9.9e-09 Score=67.77 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=34.1
Q ss_pred ccCCCCChHHHHHHhcCCCcccchhhcccchhhHHHHh
Q 046658 3 YRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWT 40 (413)
Q Consensus 3 D~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~ 40 (413)
+.++.||+|++.+||++|+.+|.++++.|||+|+.+..
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999998654
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.66 E-value=1.1e-07 Score=89.53 Aligned_cols=79 Identities=11% Similarity=0.018 Sum_probs=46.5
Q ss_pred CCCeeEEEEEeCCCC---hhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEe--ecCCH
Q 046658 285 FSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIR--VQGDE 359 (413)
Q Consensus 285 ~~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~--~~~~~ 359 (413)
...++.+.+...... ...++..+..+|+|+.|++.....+.. +.... ....+|+.+.+.+ +.+..
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i---------~~~~~-~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV---------PDGIF-DRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC---------CTTTT-TTCTTCCEEECCSSCBCCCH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc---------CHHHH-hcCCCCCEEEeeCCCccCcC
Confidence 445666666665443 335667788999999999987332210 01110 1126788888875 34666
Q ss_pred hHHHHHHHHHhcCC
Q 046658 360 DEQRVIEYFLQQCK 373 (413)
Q Consensus 360 ~~~~l~~~ll~~a~ 373 (413)
..+..+...++...
T Consensus 318 ~~l~~l~~~~~~~~ 331 (353)
T 2z80_A 318 PRIDYLSRWLNKNS 331 (353)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHhcc
Confidence 66666655555443
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.64 E-value=1.1e-08 Score=93.38 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=16.2
Q ss_pred cccccccEEEeCCccccccC-CCcccCCcccEEEeeee
Q 046658 130 YTSTTLEVLKLDSDCVINAP-CVGTCFPTMKVLHMQLQ 166 (413)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~ 166 (413)
..+++|++|+|.++.....+ .....+++|++|+|.+.
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 33445555555444333331 12334455555555444
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.61 E-value=3.1e-09 Score=101.38 Aligned_cols=246 Identities=14% Similarity=0.085 Sum_probs=116.2
Q ss_pred CCcEEEEEEECcc---eeeecCccccccccccEEEeCCcccccc----CCC-------cccCCcccEEEeeeeEeChh--
Q 046658 108 QSVRELQLYLGQQ---NRVQLLETIYTSTTLEVLKLDSDCVINA----PCV-------GTCFPTMKVLHMQLQNLDNS-- 171 (413)
Q Consensus 108 ~~v~~L~l~~~~~---~~~~lp~~~~~~~~L~~L~L~~~~~~~~----~~~-------~~~~~~L~~L~L~~~~~~~~-- 171 (413)
.+++.|+++.+.- ....++..+..+++|++|+|.+|..-.+ |.. ...+++|++|+|+++.+++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 4677777664321 1222334455567777777776532211 111 13567777777777766433
Q ss_pred -hHHHHhccCCccceEEEEeeecC-CCCcceEE---Eec---------CccceeEEEeeecCCCCCCC-Ccc---eEEEe
Q 046658 172 -LTEKMFSACPCLEELSVHAYFDA-DDSRTNFI---IAS---------STLKHFTLTVVIDTDNHFSE-IDH---TVMLK 233 (413)
Q Consensus 172 -~l~~l~~~cp~Le~L~l~~~~~~-~~~~~~~~---i~~---------~~L~~L~i~~~~~~~~~~~~-~~~---~~~~~ 233 (413)
.+...+..|+.|+.|.+.+|... ..... +. ... ++|+.|.+. +|.... +.. .....
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-l~~~l~~l~~~~~~~~~~~L~~L~L~-----~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAK-IARALQELAVNKKAKNAPPLRSIICG-----RNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHH-HHHHHHHHHHHHHHHTCCCCCEEECC-----SSCCTGGGHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHH-HHHHHHHHhhhhhcccCCCCcEEECC-----CCCCCcHHHHHHHHHHHh
Confidence 34445566777777777776540 00000 00 001 566666666 554431 101 01113
Q ss_pred cCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCC---hhhHHHHHhcC
Q 046658 234 APNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG---WRVLPIILHSS 310 (413)
Q Consensus 234 ~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~---~~~l~~ll~~~ 310 (413)
.++|++|.+.++......+. ......+..+++|++|.|+.+... ...++..+..+
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~----------------------~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIE----------------------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHH----------------------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred CCCcCEEECcCCCCCHhHHH----------------------HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 44566665555322100000 000002334566777777665543 24456667777
Q ss_pred CCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeecCCHhHH-HHHHHHHhcCCCCceEEEEeecc
Q 046658 311 PNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQ-RVIEYFLQQCKCLEVMIINCKAL 385 (413)
Q Consensus 311 p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~~-~l~~~ll~~a~~Le~l~i~~~~~ 385 (413)
|+|+.|.+.....+..+... -......+...+|+.+.+.+-.-....+ .+...+..+.+.|+.+.+..+.-
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~----l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAA----VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHH----HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCcCEEECCCCCCchhhHHH----HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 77777777663222111000 0000000112567776665433222222 34444446677777777766543
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.59 E-value=3.4e-09 Score=101.24 Aligned_cols=103 Identities=20% Similarity=0.240 Sum_probs=51.3
Q ss_pred CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
++++.|++.... ...++. .+..+++|++|+|.++.....++ ....+++|++|+|.++.++. .-..++..++.|++
T Consensus 69 ~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 69 RQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred ccCcEEECCCCc--ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcE
Confidence 456666655332 122332 34455666666666665554433 24556666666666665531 11223455666666
Q ss_pred EEEEeeecCCCCcceEEEecCccceeEEE
Q 046658 186 LSVHAYFDADDSRTNFIIASSTLKHFTLT 214 (413)
Q Consensus 186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~ 214 (413)
|.+.++.. ..+........++|+.|.+.
T Consensus 146 L~L~~n~l-~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 146 LSMSNNNL-ERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp EECCSSCC-CBCCTTTTSSCTTCCEEECC
T ss_pred EECCCCcc-CccChhhccCCCCCCEEECC
Confidence 66666654 11110000123566666666
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.58 E-value=1.2e-07 Score=92.73 Aligned_cols=183 Identities=17% Similarity=0.194 Sum_probs=90.6
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.++++|++....- ..++. +..+++|++|+|.+|.....+ ....+++|++|++.++.+.+- . -+..++.|++|.
T Consensus 90 ~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~ 162 (466)
T 1o6v_A 90 TKLVDILMNNNQI--ADITP-LANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI--S-ALSGLTSLQQLS 162 (466)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEEEEEEECCC--G-GGTTCTTCSEEE
T ss_pred ccCCEEECCCCcc--ccChh-hcCCCCCCEEECCCCCCCCCh-HHcCCCCCCEEECCCCccCCC--h-hhccCCcccEee
Confidence 4555555553321 22233 445566666666666554444 355566666666666665221 1 145566666666
Q ss_pred EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-eeeeecCCCceEEEEEee
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVVHIS 266 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i~~~ 266 (413)
+.++.. .... ....++|+.|.+. ++....- . .....++|++|++.++... ...+..+++|+.+.+...
T Consensus 163 l~~~~~--~~~~--~~~l~~L~~L~l~-----~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 163 FGNQVT--DLKP--LANLTTLERLDIS-----SNKVSDI-S-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 231 (466)
T ss_dssp EEESCC--CCGG--GTTCTTCCEEECC-----SSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCCccc--Cchh--hccCCCCCEEECc-----CCcCCCC-h-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCC
Confidence 653322 1111 0123567777777 6654321 1 1124577888877775442 223556777777666321
Q ss_pred cceeEEEecccCcccCCCCCCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEecc
Q 046658 267 YAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 267 ~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~ 320 (413)
. + .. ...+..+++|++|.+..+... ... +..+++|+.|.+..
T Consensus 232 ~--l----~~--~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 232 Q--L----KD--IGTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGA 274 (466)
T ss_dssp C--C----CC--CGGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCS
T ss_pred C--c----cc--chhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCC
Confidence 1 0 00 011234455666666554432 111 45556666665554
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.58 E-value=2.3e-08 Score=90.36 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=32.6
Q ss_pred ccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 133 TTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 133 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
++|++|+|.++.+...+. ....+++|++|+|.+..++. .-..++..++.|++|.+.++..
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcC
Confidence 456666666665544443 34556666666666555421 1122335566666666666554
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.56 E-value=1.6e-08 Score=99.25 Aligned_cols=198 Identities=16% Similarity=0.074 Sum_probs=107.3
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
.++++|+++...- ....|..+..+++|++|+|.++.....|. ...++++|++|+|.+..+... ....+..++.|++|
T Consensus 56 ~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 133 (477)
T 2id5_A 56 PHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSL 133 (477)
T ss_dssp TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcc-CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEE
Confidence 4677777764432 11224556667888888888876666653 346778888888887665221 12334667888888
Q ss_pred EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc---eeeeecCCCceEEEE
Q 046658 187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG---SYVLEEMHCLHEAVV 263 (413)
Q Consensus 187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i 263 (413)
.+.++.. ..+........++|+.|.+. ++....-........++|+.|++.++... ...+..+++|+.+.+
T Consensus 134 ~l~~n~l-~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 134 EVGDNDL-VYISHRAFSGLNSLEQLTLE-----KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp EECCTTC-CEECTTSSTTCTTCCEEEEE-----SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred ECCCCcc-ceeChhhccCCCCCCEEECC-----CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 8877654 11000000123678888888 76543211111224577888888775442 234566777777766
Q ss_pred EeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 264 HISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 264 ~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
..... .-.+. .......+|++|.+..+... ..-...+..+++|+.|.+..
T Consensus 208 ~~~~~--~~~~~----~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 208 SHWPY--LDTMT----PNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp ECCTT--CCEEC----TTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCS
T ss_pred CCCcc--ccccC----cccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCC
Confidence 43110 00000 00112236677777665432 11112455667777776665
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.56 E-value=1.1e-07 Score=93.13 Aligned_cols=160 Identities=18% Similarity=0.199 Sum_probs=94.9
Q ss_pred CCcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCccc
Q 046658 80 GNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMK 159 (413)
Q Consensus 80 ~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~ 159 (413)
+.++.+.+....-... .. .....+++.|++....- ..++. +..+++|++|++.+|.....+ ....+++|+
T Consensus 90 ~~L~~L~l~~n~l~~~---~~---~~~l~~L~~L~L~~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~ 159 (466)
T 1o6v_A 90 TKLVDILMNNNQIADI---TP---LANLTNLTGLTLFNNQI--TDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQ 159 (466)
T ss_dssp TTCCEEECCSSCCCCC---GG---GTTCTTCCEEECCSSCC--CCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCS
T ss_pred ccCCEEECCCCccccC---hh---hcCCCCCCEEECCCCCC--CCChH-HcCCCCCCEEECCCCccCCCh-hhccCCccc
Confidence 3477777765432211 11 22346899999986542 33444 677899999999999776665 567788888
Q ss_pred EEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeE
Q 046658 160 VLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQC 239 (413)
Q Consensus 160 ~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~ 239 (413)
+|++.....+.. . +..++.|++|.+.+|.. ..+.. + ...++|+.|.+. +|....... ....++|+.
T Consensus 160 ~L~l~~~~~~~~---~-~~~l~~L~~L~l~~n~l-~~~~~-l-~~l~~L~~L~l~-----~n~l~~~~~--~~~l~~L~~ 225 (466)
T 1o6v_A 160 QLSFGNQVTDLK---P-LANLTTLERLDISSNKV-SDISV-L-AKLTNLESLIAT-----NNQISDITP--LGILTNLDE 225 (466)
T ss_dssp EEEEEESCCCCG---G-GTTCTTCCEEECCSSCC-CCCGG-G-GGCTTCSEEECC-----SSCCCCCGG--GGGCTTCCE
T ss_pred EeecCCcccCch---h-hccCCCCCEEECcCCcC-CCChh-h-ccCCCCCEEEec-----CCccccccc--ccccCCCCE
Confidence 888864222211 1 56778888888887766 33322 1 133667777777 665432111 113566777
Q ss_pred EEEeecccc-eeeeecCCCceEEEE
Q 046658 240 LHIIADRLG-SYVLEEMHCLHEAVV 263 (413)
Q Consensus 240 L~~~~~~~~-~~~~~~~~~L~~~~i 263 (413)
|++.++... ...+..+++|+.+++
T Consensus 226 L~l~~n~l~~~~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 226 LSLNGNQLKDIGTLASLTNLTDLDL 250 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred EECCCCCcccchhhhcCCCCCEEEC
Confidence 777664332 123445666666555
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.54 E-value=7.5e-09 Score=107.80 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=92.8
Q ss_pred CCcEEEEEEECcceeeecCc--cccccccccEEEeCCcccccc-CCC-cccCCcccEEEeeeeEeChhhH--HHHhccCC
Q 046658 108 QSVRELQLYLGQQNRVQLLE--TIYTSTTLEVLKLDSDCVINA-PCV-GTCFPTMKVLHMQLQNLDNSLT--EKMFSACP 181 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~-~~~-~~~~~~L~~L~L~~~~~~~~~l--~~l~~~cp 181 (413)
.+++.|+++...- ...+|. .+..+++|++|+|.+|..... |.. ...+++|++|+|.++.++.... ...+..|+
T Consensus 100 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 4677777765432 223555 677788888888888765433 212 2578888888888887733222 23367888
Q ss_pred ccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc---eeeeecCCCc
Q 046658 182 CLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG---SYVLEEMHCL 258 (413)
Q Consensus 182 ~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L 258 (413)
.|++|.+.+|.. .+... . ...++|+.|.+. ++........ ....++|++|++.++... ...+.++++|
T Consensus 179 ~L~~L~Ls~n~l-~~~~~-~-~~l~~L~~L~Ls-----~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 249 (768)
T 3rgz_A 179 ELKHLAISGNKI-SGDVD-V-SRCVNLEFLDVS-----SNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249 (768)
T ss_dssp TCCEEECCSSEE-ESCCB-C-TTCTTCCEEECC-----SSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSC
T ss_pred CCCEEECCCCcc-cccCC-c-ccCCcCCEEECc-----CCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCC
Confidence 888888888876 21111 1 234778888888 7765432222 335678888888875442 2345677777
Q ss_pred eEEEEE
Q 046658 259 HEAVVH 264 (413)
Q Consensus 259 ~~~~i~ 264 (413)
+.+++.
T Consensus 250 ~~L~Ls 255 (768)
T 3rgz_A 250 KLLNIS 255 (768)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 777663
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.53 E-value=3.3e-08 Score=96.39 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=18.0
Q ss_pred CCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecccc
Q 046658 284 SFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKEC 322 (413)
Q Consensus 284 ~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 322 (413)
.+++|++|+|..+... ......+..+++|+.|.+.+.+
T Consensus 264 ~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 GLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCC
Confidence 4455666666554322 1111233455666666665543
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.52 E-value=7.2e-08 Score=94.57 Aligned_cols=177 Identities=14% Similarity=0.072 Sum_probs=73.6
Q ss_pred cccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658 130 YTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL 208 (413)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 208 (413)
..+++|++|+|.++.....++ ...++++|++|+|.++.++.- ....+..++.|+.|.+.++.. ..+........++|
T Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L 202 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRL 202 (477)
T ss_dssp TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCC-CEECTTCSCSCTTC
T ss_pred cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcC-cEeChhhcccCccc
Confidence 334455555555443333221 334455555555555544211 122344555555555555543 10000000123456
Q ss_pred ceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccce---eeeecCCCceEEEEEeecceeEEEecccCcccCCCC
Q 046658 209 KHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS---YVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSF 285 (413)
Q Consensus 209 ~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~---~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~ 285 (413)
+.|.+. +|.............++|++|+++++.... ..+..+++|+.+++... .+. ......+..+
T Consensus 203 ~~L~l~-----~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~----~~~~~~~~~l 271 (477)
T 2id5_A 203 KVLEIS-----HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN--PIS----TIEGSMLHEL 271 (477)
T ss_dssp CEEEEE-----CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS--CCC----EECTTSCTTC
T ss_pred ceeeCC-----CCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC--cCC----ccChhhcccc
Confidence 666665 543321100001112356666666543321 12445566665554221 000 0001123345
Q ss_pred CCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 286 SELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 286 ~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
++|++|.+..+... ...+..+..+|+|+.|.+..
T Consensus 272 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp TTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCS
T ss_pred ccCCEEECCCCccc-eECHHHhcCcccCCEEECCC
Confidence 56666666554322 01122345666666666655
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.50 E-value=4.4e-07 Score=90.49 Aligned_cols=93 Identities=13% Similarity=0.050 Sum_probs=45.3
Q ss_pred CCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeecCCHhH
Q 046658 282 CPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDE 361 (413)
Q Consensus 282 ~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~ 361 (413)
+..+.+|++|.+..+... .....++..+++|+.|.+.......... . +... .-...+|+.+.+.+-.-....
T Consensus 168 l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~-~~~~-~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQF-----S-PLPV-DEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp TTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCC-----C-CCSS-CCCCCCCCEEEEESCEEEHHH
T ss_pred hhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccc-----c-ccch-hhhhhcccceeccccccchhH
Confidence 445667888888765432 1112234568888888887632211000 0 0000 001256777776654433233
Q ss_pred HHHHHHHHhcCCCCceEEEEe
Q 046658 362 QRVIEYFLQQCKCLEVMIINC 382 (413)
Q Consensus 362 ~~l~~~ll~~a~~Le~l~i~~ 382 (413)
..-+...+.+.+.|+.+.+..
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEES
T ss_pred HHHHHHHhhhhcccccccccc
Confidence 333333445556666666553
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.50 E-value=5e-09 Score=96.59 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=42.0
Q ss_pred CCCCCCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEe--ecCC
Q 046658 282 CPSFSELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIR--VQGD 358 (413)
Q Consensus 282 ~p~~~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~--~~~~ 358 (413)
+..+++|++|.++.+... ... ..+..+|+|+.|++.......... ..... ...+|+.+.+.+ +.+.
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~-~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDT--FPYKCLNSLQVLDYSLNHIMTSKK--------QELQH-FPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCS--GGGTTCTTCCEEECTTSCCCBCSS--------SSCCC-CCTTCCEEECTTCCEECS
T ss_pred hcCCCCCCEEECCCCccCccCh--hhccCcccCCEeECCCCCCcccCH--------HHHHh-hhccCCEEEccCCCeecc
Confidence 445677888888766532 111 125678899999888733221110 01101 114678887764 3455
Q ss_pred HhHHHHHHHHH
Q 046658 359 EDEQRVIEYFL 369 (413)
Q Consensus 359 ~~~~~l~~~ll 369 (413)
.....+.+++-
T Consensus 264 c~~~~~~~~l~ 274 (306)
T 2z66_A 264 CEHQSFLQWIK 274 (306)
T ss_dssp GGGHHHHHHHH
T ss_pred cChHHHHHHHH
Confidence 55556666543
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.48 E-value=3e-08 Score=91.77 Aligned_cols=85 Identities=15% Similarity=0.041 Sum_probs=42.8
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCcccc-ccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVI-NAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
..++.|+++........+|..+..+++|++|+|.++.+. ..|.....+++|++|+|.+..+... +...+..++.|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeE
Confidence 455666665311112344555555566666666655444 2332345566666666665555211 12233455666666
Q ss_pred EEEeeec
Q 046658 187 SVHAYFD 193 (413)
Q Consensus 187 ~l~~~~~ 193 (413)
.+.++..
T Consensus 155 ~L~~N~l 161 (313)
T 1ogq_A 155 TFDGNRI 161 (313)
T ss_dssp ECCSSCC
T ss_pred ECcCCcc
Confidence 6665543
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.47 E-value=2.7e-08 Score=100.65 Aligned_cols=82 Identities=20% Similarity=0.198 Sum_probs=44.7
Q ss_pred CcEEEEEEECcceeeecCcc-ccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 109 SVRELQLYLGQQNRVQLLET-IYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 109 ~v~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.++.+++.... ...++.. +..+++|++|++.++.....|.....+++|++|++.++.+... ....+..+|.|+.|.
T Consensus 255 ~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHY--FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCC--CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEE
T ss_pred ceeEEEeecCc--cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEE
Confidence 44555544322 2233332 3445677777777766555554555667777777776655321 122345566666666
Q ss_pred EEeeec
Q 046658 188 VHAYFD 193 (413)
Q Consensus 188 l~~~~~ 193 (413)
+.+|..
T Consensus 332 l~~n~~ 337 (606)
T 3t6q_A 332 IKGNTK 337 (606)
T ss_dssp CCSCSS
T ss_pred CCCCCc
Confidence 666643
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.47 E-value=6.6e-08 Score=93.88 Aligned_cols=199 Identities=15% Similarity=0.137 Sum_probs=100.8
Q ss_pred CCcEEEEEEECcceeeecC-ccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
.+++.|+++...- ..++ ..+..+++|++|+|.+|.+...+. ....+++|++|+|.+..++.- ....+..++.|++
T Consensus 88 ~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 88 RHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRR 164 (440)
T ss_dssp SSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCE
Confidence 4566666654332 1222 334445667777777665555543 345666777777766655211 1123455677777
Q ss_pred EEEEeeecCCCCcceEE----EecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccce---eeeecCCCc
Q 046658 186 LSVHAYFDADDSRTNFI----IASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS---YVLEEMHCL 258 (413)
Q Consensus 186 L~l~~~~~~~~~~~~~~----i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~---~~~~~~~~L 258 (413)
|.+.+|.. +.. +. ...++|+.|.+. ++....- . .....++|+.|+++++.... ..+.++++|
T Consensus 165 L~l~~~~~---l~~-i~~~~~~~l~~L~~L~L~-----~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 233 (440)
T 3zyj_A 165 LDLGELKR---LSY-ISEGAFEGLSNLRYLNLA-----MCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233 (440)
T ss_dssp EECCCCTT---CCE-ECTTTTTTCSSCCEEECT-----TSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred eCCCCCCC---cce-eCcchhhcccccCeecCC-----CCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccC
Confidence 77766543 111 11 013567777776 5543321 1 11234567777776654322 234556666
Q ss_pred eEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecc
Q 046658 259 HEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEIT 327 (413)
Q Consensus 259 ~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~ 327 (413)
+.+.+... ++. ......+..+++|++|+|..+... ......+..+++|+.|.+.+.++..+|
T Consensus 234 ~~L~L~~n--~l~----~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 234 QKLWMIQS--QIQ----VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CEEECTTC--CCC----EECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred CEEECCCC--cee----EEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCccCCC
Confidence 66554210 000 000122445667777777665432 111234566778888887775554433
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.46 E-value=1.4e-08 Score=98.88 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=40.0
Q ss_pred CCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeecCCHhHHH
Q 046658 284 SFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQR 363 (413)
Q Consensus 284 ~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~~~ 363 (413)
.+++|++|.++.+... ......+..+++|+.|.+......... +..... ..+|+.+.+.+-.-. .
T Consensus 321 ~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~--l~~L~~L~L~~N~l~----~ 385 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALG--------DQSFLG--LPNLKELALDTNQLK----S 385 (455)
T ss_dssp TCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEEC--------TTTTTT--CTTCCEEECCSSCCS----C
T ss_pred CcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccC--------hhhccc--cccccEEECCCCccc----c
Confidence 4556666666554321 111234456666666666652211110 011111 256777766542211 0
Q ss_pred HHHHHHhcCCCCceEEEEeec
Q 046658 364 VIEYFLQQCKCLEVMIINCKA 384 (413)
Q Consensus 364 l~~~ll~~a~~Le~l~i~~~~ 384 (413)
+....+...+.|+++.+..+.
T Consensus 386 ~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 386 VPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred CCHhHhccCCcccEEEccCCC
Confidence 111234667778887777654
No 29
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.44 E-value=9.2e-08 Score=88.59 Aligned_cols=199 Identities=16% Similarity=0.124 Sum_probs=123.3
Q ss_pred cccHHHHHHHHHh--CCcEEEEEEECcceeeecC-ccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChh
Q 046658 95 LSSVNFWLSSALM--QSVRELQLYLGQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNS 171 (413)
Q Consensus 95 ~~~~~~wl~~a~~--~~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 171 (413)
...+...+..... .++++|+++...- ..++ ..+..+++|++|+|.+|.....+ ....+++|++|+|.++.++.
T Consensus 19 ~~~l~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~- 94 (317)
T 3o53_A 19 DSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE- 94 (317)
T ss_dssp TTTHHHHHHHHHTTGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEECCSSEEEE-
T ss_pred ccchhhhHHHHhccCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEECcCCcccc-
Confidence 3445555544433 4677877775432 2233 45566788999999888766555 36778899999998887732
Q ss_pred hHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceee
Q 046658 172 LTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYV 251 (413)
Q Consensus 172 ~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~ 251 (413)
+..+|.|+.|.+.++.. . .. .....++|+.|.+. ++.............++|++|+++++......
T Consensus 95 -----l~~~~~L~~L~l~~n~l-~--~~-~~~~~~~L~~L~l~-----~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 95 -----LLVGPSIETLHAANNNI-S--RV-SCSRGQGKKNIYLA-----NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp -----EEECTTCCEEECCSSCC-S--EE-EECCCSSCEEEECC-----SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred -----ccCCCCcCEEECCCCcc-C--Cc-CccccCCCCEEECC-----CCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 12458899999888876 1 11 22335778888888 77654311112234688999988886553222
Q ss_pred ----eecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccc
Q 046658 252 ----LEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKE 321 (413)
Q Consensus 252 ----~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 321 (413)
...+++|+.+++... .++-. .....+++|++|.++.+... .++.-+..+|+|+.|.+...
T Consensus 161 ~~~~~~~l~~L~~L~L~~N--~l~~~------~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYN--FIYDV------KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp GGGGGGGTTTCCEEECTTS--CCCEE------ECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTS
T ss_pred HHHHhhccCcCCEEECCCC--cCccc------ccccccccCCEEECCCCcCC--cchhhhcccCcccEEECcCC
Confidence 235678887766321 11000 11124678999999887644 22222678899999999874
No 30
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.44 E-value=4.6e-07 Score=83.53 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=122.6
Q ss_pred hCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
-.++++|++....- ..+| .+..+++|++|+|.+|...+.+ ....+++|++|+|.++.+++- . -+..++.|+.|
T Consensus 40 l~~L~~L~l~~~~i--~~l~-~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCc--cCch-hhhccCCCCEEEccCCcCCCCh-hHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEE
Confidence 35788888765432 2344 4567899999999998777776 377889999999998888332 1 36778999999
Q ss_pred EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-eeeeecCCCceEEEEEe
Q 046658 187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVVHI 265 (413)
Q Consensus 187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i~~ 265 (413)
.+.+|.. ..+.. + ...++|+.|.+. ++....- .. ....++|++|+++++... ...+..+++|+.+.+..
T Consensus 113 ~l~~n~l-~~~~~-l-~~l~~L~~L~l~-----~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 113 DLTSTQI-TDVTP-L-AGLSNLQVLYLD-----LNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182 (308)
T ss_dssp ECTTSCC-CCCGG-G-TTCTTCCEEECC-----SSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred ECCCCCC-CCchh-h-cCCCCCCEEECC-----CCccCcC-cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCC
Confidence 9999877 33333 1 234789999998 7765421 11 224678999988886443 22266777787776632
Q ss_pred ecceeEEEecccCcccCCCCCCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEecccc
Q 046658 266 SYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDKEC 322 (413)
Q Consensus 266 ~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~~~ 322 (413)
.. +.. ...+..+++|++|.++.+... ... +..+|+|+.|.+....
T Consensus 183 n~------l~~--~~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 183 NK------ISD--ISPLASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQT 228 (308)
T ss_dssp SC------CCC--CGGGGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEE
T ss_pred Cc------cCc--ChhhcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCe
Confidence 10 000 011335667888888776543 221 5788888888887743
No 31
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.43 E-value=6.5e-08 Score=95.17 Aligned_cols=185 Identities=15% Similarity=0.132 Sum_probs=114.4
Q ss_pred CcEEEEEEECcceeeec-CccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 109 SVRELQLYLGQQNRVQL-LETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 109 ~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
+++.|+++...- ..+ |..+..+++|++|+|++|.+...+ ....+++|++|+|+++.+++- ...|.|+.|.
T Consensus 35 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~l------~~~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQEL------LVGPSIETLH 105 (487)
T ss_dssp GCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSEEEEE------EECTTCCEEE
T ss_pred CccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCcCCCC------CCCCCcCEEE
Confidence 677777775442 223 345566788888888888765554 367788888888888876321 2348888888
Q ss_pred EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccccee---ee-ecCCCceEEEE
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSY---VL-EEMHCLHEAVV 263 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~---~~-~~~~~L~~~~i 263 (413)
+.+|.. ..+ .....++|+.|.+. ++.............++|+.|+++++..... .+ .++++|+.+++
T Consensus 106 L~~N~l-~~~---~~~~l~~L~~L~L~-----~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 106 AANNNI-SRV---SCSRGQGKKNIYLA-----NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp CCSSCC-CCE---EECCCSSCEEEECC-----SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCCcC-CCC---CccccCCCCEEECC-----CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 888876 221 22234778888888 7765432122223467888888888655322 22 25678877766
Q ss_pred EeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccc
Q 046658 264 HISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKE 321 (413)
Q Consensus 264 ~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 321 (413)
... .++-. .....+++|+.|.++.+... .++.-+..+|+|+.|.+...
T Consensus 177 s~N--~l~~~------~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 177 QYN--FIYDV------KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp TTS--CCCEE------ECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTS
T ss_pred CCC--ccccc------cccccCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecCC
Confidence 321 01000 11224678999998876643 22222668899999998873
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.42 E-value=9.4e-09 Score=94.73 Aligned_cols=233 Identities=13% Similarity=0.135 Sum_probs=135.8
Q ss_pred eeecCccccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeCh-hhHHHHhccCCccceEEEEeeecCCCCcc
Q 046658 122 RVQLLETIYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDN-SLTEKMFSACPCLEELSVHAYFDADDSRT 199 (413)
Q Consensus 122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~~~~~~~~~~ 199 (413)
...+|..++ ++|++|+|.++.....|.. ...+++|++|+|.+..++. ......+..++.|++|.+.++.. ..+..
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l~~ 95 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSS 95 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEEEE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccChh
Confidence 445565443 6899999999877777643 5688999999999887732 21223344689999999998876 22222
Q ss_pred eEEEecCccceeEEEeeecCCCCCCCCcc-eEEEecCceeEEEEeecccc---eeeeecCCCceEEEEEeecceeEEEec
Q 046658 200 NFIIASSTLKHFTLTVVIDTDNHFSEIDH-TVMLKAPNLQCLHIIADRLG---SYVLEEMHCLHEAVVHISYAEWSQAVD 275 (413)
Q Consensus 200 ~~~i~~~~L~~L~i~~~~~~~~~~~~~~~-~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i~~~~~~l~l~~~ 275 (413)
.....++|+.|.+. ++....... ......++|++|+++++... ...+..+++|+.+.+... . +.
T Consensus 96 -~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~----l~ 163 (306)
T 2z66_A 96 -NFLGLEQLEHLDFQ-----HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN--S----FQ 163 (306)
T ss_dssp -EEETCTTCCEEECT-----TSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC--E----EG
T ss_pred -hcCCCCCCCEEECC-----CCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC--c----cc
Confidence 22345789999888 654321111 11224678999988885443 223566788887766321 0 00
Q ss_pred c-cCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEe
Q 046658 276 Q-CYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIR 354 (413)
Q Consensus 276 ~-~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~ 354 (413)
. .....+..+++|++|.++.+... ...+..+..+|+|+.|.+.......... .... ...+|+.+.+.+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~--~l~~L~~L~L~~ 232 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDT--------FPYK--CLNSLQVLDYSL 232 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCS--------GGGT--TCTTCCEEECTT
T ss_pred cccchhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccCh--------hhcc--CcccCCEeECCC
Confidence 0 00122456778999999876533 1123456788999999998733221110 0011 126788877653
Q ss_pred ecCCHhHHHHHHHHHhcC-CCCceEEEEeec
Q 046658 355 VQGDEDEQRVIEYFLQQC-KCLEVMIINCKA 384 (413)
Q Consensus 355 ~~~~~~~~~l~~~ll~~a-~~Le~l~i~~~~ 384 (413)
-.-.. .....+... +.|+.+.+..+.
T Consensus 233 N~l~~----~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 233 NHIMT----SKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SCCCB----CSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCcc----cCHHHHHhhhccCCEEEccCCC
Confidence 22100 001112344 489988887654
No 33
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.41 E-value=3.5e-08 Score=96.22 Aligned_cols=237 Identities=14% Similarity=0.062 Sum_probs=122.2
Q ss_pred CCcEEEEEEECcceeeec-CccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQL-LETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
.+++.|+++...- ..+ |..+..+++|++|+|.++.+...++ .+.++++|++|+|.+..++.- ....+..++.|++
T Consensus 75 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCE
T ss_pred CCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCE
Confidence 4566666664432 222 3445566777777777776555442 455677777777777665311 1233456777777
Q ss_pred EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcce-EEEecCceeEEEEeecccc-eeeeecCCCceEEEE
Q 046658 186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHT-VMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVV 263 (413)
Q Consensus 186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~-~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i 263 (413)
|.+.++.. ..+........++|+.|.+. +|........ ..-..++|++|+++++... ...+..+++|+.+++
T Consensus 152 L~L~~N~l-~~~~~~~~~~l~~L~~L~l~-----~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 152 LWLRNNPI-ESIPSYAFNRVPSLMRLDLG-----ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM 225 (452)
T ss_dssp EECCSCCC-CEECTTTTTTCTTCCEEECC-----CCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEEC
T ss_pred EECCCCCc-ceeCHhHHhcCCcccEEeCC-----CCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEEC
Confidence 77777765 11100000123667777777 6543210000 0113467777777765442 223455666666555
Q ss_pred EeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCccc
Q 046658 264 HISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCL 343 (413)
Q Consensus 264 ~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~ 343 (413)
... .+. ......+..+++|+.|.+..+... ......+..+|+|+.|.+.....+... ..... .
T Consensus 226 s~N--~l~----~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~--~ 288 (452)
T 3zyi_A 226 SGN--HFP----EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLP--------HDLFT--P 288 (452)
T ss_dssp TTS--CCS----EECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCCC--------TTSST--T
T ss_pred cCC--cCc----ccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEECCCCcCCccC--------hHHhc--c
Confidence 210 000 000122445667777777665432 111233567788888888763221100 00111 1
Q ss_pred ccceeEEEEEe--ecCCHhHHHHHHHHHh
Q 046658 344 LQRVKKIEIIR--VQGDEDEQRVIEYFLQ 370 (413)
Q Consensus 344 ~~~L~~v~i~~--~~~~~~~~~l~~~ll~ 370 (413)
..+|+.+.+.+ +.+++....+..++-+
T Consensus 289 l~~L~~L~L~~Np~~CdC~~~~l~~~l~~ 317 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDCDILWLAWWLRE 317 (452)
T ss_dssp CTTCCEEECCSSCEECSTTTHHHHHHHHH
T ss_pred ccCCCEEEccCCCcCCCCCchHHHHHHHH
Confidence 26788887764 3455555555555444
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.41 E-value=2.7e-08 Score=100.66 Aligned_cols=234 Identities=10% Similarity=0.066 Sum_probs=133.5
Q ss_pred hCCcEEEEEEECcceeeecCccccccccccEEEeCCcccccc---CCCcccCCcccEEEeeeeEeChhhHHHHhccCCcc
Q 046658 107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINA---PCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCL 183 (413)
Q Consensus 107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 183 (413)
...++++++...... ... .+..+++|++|++.+|..... +.....+++|++|+|.++.+.. +...+..++.|
T Consensus 327 l~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~l~~L 401 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGS-ISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEEL 401 (606)
T ss_dssp CSSCCEEEEESCSSC-EEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE--ECCCCTTCTTC
T ss_pred CCccceeeccCCcCc-cch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc--chhhccCCCCC
Confidence 467888888865321 111 345678899999988865544 3245678888888888876622 12445678888
Q ss_pred ceEEEEeeecCCCCc-ceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc----eeeeecCCCc
Q 046658 184 EELSVHAYFDADDSR-TNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG----SYVLEEMHCL 258 (413)
Q Consensus 184 e~L~l~~~~~~~~~~-~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~----~~~~~~~~~L 258 (413)
+.|.+.+|....... . .....++|+.|.+. +|.............++|++|++.++... ...+..+++|
T Consensus 402 ~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFS-AFLSLEKLLYLDIS-----YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475 (606)
T ss_dssp CEEECTTSEEESTTTTT-TTTTCTTCCEEECT-----TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CeeECCCCccCCccChh-hhhccccCCEEECc-----CCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence 888888876511011 0 01134678888887 76543211111224578888888875442 2245677888
Q ss_pred eEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCc
Q 046658 259 HEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDC 338 (413)
Q Consensus 259 ~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~ 338 (413)
+.+++... .++- .....+..+++|++|.++.+... ...+..+..+++|+.|++.....+... ..
T Consensus 476 ~~L~Ls~n--~l~~----~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~p---------~~ 539 (606)
T 3vq2_A 476 TFLDLSKC--QLEQ----ISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETSK---------GI 539 (606)
T ss_dssp CEEECTTS--CCCE----ECTTTTTTCTTCCEEECCSSCCS-CEEGGGTTTCTTCCEEECTTSCCCCEE---------SC
T ss_pred CEEECCCC--cCCc----cChhhhcccccCCEEECCCCcCC-CcCHHHccCCCcCCEEECCCCcCcccC---------Hh
Confidence 87766321 0110 00122446778888888776432 122445677888888888773322100 00
Q ss_pred cCcccccceeEEEEEe--ecCCHhHHHHHHHH
Q 046658 339 VPQCLLQRVKKIEIIR--VQGDEDEQRVIEYF 368 (413)
Q Consensus 339 ~~~c~~~~L~~v~i~~--~~~~~~~~~l~~~l 368 (413)
. .....+|+.+.+.+ +.+.+....++.++
T Consensus 540 ~-~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 540 L-QHFPKSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp G-GGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred H-hhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence 0 11113577777764 33444545555543
No 35
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.41 E-value=8.9e-08 Score=86.62 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=69.5
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
..++++.+....- ..+ ..+..+++|++|+|.++...+.+ ....+++|++|+|.++.++.- ....+..++.|++|.
T Consensus 41 ~~L~~L~l~~~~i--~~~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDI--KSV-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCC--CCC-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCc--ccc-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence 5566666654331 122 23556777888888777655544 566777788888877766321 123346677788887
Q ss_pred EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~ 245 (413)
+.+|.. ..+........++|+.|.+. ++....-.....-..++|+.|+++++
T Consensus 116 L~~n~l-~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 116 LVENQL-QSLPDGVFDKLTNLTYLNLA-----HNQLQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp CTTSCC-CCCCTTTTTTCTTCCEEECC-----SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcC-CccCHHHhccCCCCCEEECC-----CCccCccCHHHhccCccCCEEECCCC
Confidence 777765 21111000123567777776 65433211111113466666666664
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=4.7e-08 Score=102.22 Aligned_cols=144 Identities=8% Similarity=0.068 Sum_probs=85.4
Q ss_pred CCcEEEEEEECcceeeecCc--cccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCc-cc
Q 046658 108 QSVRELQLYLGQQNRVQLLE--TIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPC-LE 184 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~-Le 184 (413)
.+++.|++....-. .+|. .+..+++|+.|+|.+|.+..+| ....+++|++|+|.++.+. .+..-+..++. |+
T Consensus 548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVE 622 (876)
T ss_dssp TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCC
T ss_pred CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc--cchHHHhhccccCC
Confidence 36777777755432 6776 6777788888888877666666 6667788888888877664 33344566777 88
Q ss_pred eEEEEeeecCCCCcceEEE--ecCccceeEEEeeecCCCCCCCCcceE-----EEecCceeEEEEeeccccee---eeec
Q 046658 185 ELSVHAYFDADDSRTNFII--ASSTLKHFTLTVVIDTDNHFSEIDHTV-----MLKAPNLQCLHIIADRLGSY---VLEE 254 (413)
Q Consensus 185 ~L~l~~~~~~~~~~~~~~i--~~~~L~~L~i~~~~~~~~~~~~~~~~~-----~~~~P~L~~L~~~~~~~~~~---~~~~ 254 (413)
.|.+.+|.. ..+.. ... ..++|+.|.+. ++........+ .+..++|+.|+++++..... .+..
T Consensus 623 ~L~Ls~N~L-~~lp~-~~~~~~~~~L~~L~Ls-----~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~ 695 (876)
T 4ecn_A 623 GLGFSHNKL-KYIPN-IFNAKSVYVMGSVDFS-----YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695 (876)
T ss_dssp EEECCSSCC-CSCCS-CCCTTCSSCEEEEECC-----SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHT
T ss_pred EEECcCCCC-CcCch-hhhccccCCCCEEECc-----CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHcc
Confidence 888887766 23322 111 11347777777 66543211111 01234677777776544311 1235
Q ss_pred CCCceEEEE
Q 046658 255 MHCLHEAVV 263 (413)
Q Consensus 255 ~~~L~~~~i 263 (413)
+++|+.+.+
T Consensus 696 l~~L~~L~L 704 (876)
T 4ecn_A 696 GSPISTIIL 704 (876)
T ss_dssp TCCCSEEEC
T ss_pred CCCCCEEEC
Confidence 566666655
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.40 E-value=3.6e-08 Score=98.85 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=39.0
Q ss_pred cEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEE
Q 046658 110 VRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVH 189 (413)
Q Consensus 110 v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~ 189 (413)
++++.+..........|..+..+++|++|++.++.....|.....+ +|++|++.++.+.. +.. ..+|.|+.|.+.
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~ 333 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFT 333 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEE
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCc
Confidence 4445544432223334444455566666666665554444333444 56666666555421 111 245555666555
Q ss_pred eeec
Q 046658 190 AYFD 193 (413)
Q Consensus 190 ~~~~ 193 (413)
++..
T Consensus 334 ~n~~ 337 (570)
T 2z63_A 334 SNKG 337 (570)
T ss_dssp SCBS
T ss_pred CCcc
Confidence 5544
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.40 E-value=1.4e-07 Score=87.16 Aligned_cols=197 Identities=13% Similarity=0.037 Sum_probs=114.2
Q ss_pred CCcEEEEEEECcc-eeeecCccccccccccEEEeCC-cccc-ccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccc
Q 046658 108 QSVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDS-DCVI-NAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLE 184 (413)
Q Consensus 108 ~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~-~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 184 (413)
..+++|++....- ....+|..+..+++|++|+|.+ +... ..|.....+++|++|+|.+..++.. +...+..++.|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCC
Confidence 4688888886543 2236888888999999999995 5444 3454677899999999999877421 233467789999
Q ss_pred eEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecC-ceeEEEEeecccc---eeeeecCCCceE
Q 046658 185 ELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAP-NLQCLHIIADRLG---SYVLEEMHCLHE 260 (413)
Q Consensus 185 ~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P-~L~~L~~~~~~~~---~~~~~~~~~L~~ 260 (413)
+|.+.++........ .....++|+.|.+. ++.............+ +|++|+++++... ...+..+. |+.
T Consensus 129 ~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~-----~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 129 TLDFSYNALSGTLPP-SISSLPNLVGITFD-----GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp EEECCSSEEESCCCG-GGGGCTTCCEEECC-----SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred EEeCCCCccCCcCCh-HHhcCCCCCeEECc-----CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 999999876111221 11235789999998 7754311111111233 7888888875332 11233333 555
Q ss_pred EEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 261 AVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 261 ~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
+++.. +.+.-.. ...+..+++|+.|.+..+... .....+..+|+|+.|++..
T Consensus 202 L~Ls~--N~l~~~~----~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 202 VDLSR--NMLEGDA----SVLFGSDKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp EECCS--SEEEECC----GGGCCTTSCCSEEECCSSEEC--CBGGGCCCCTTCCEEECCS
T ss_pred EECcC--CcccCcC----CHHHhcCCCCCEEECCCCcee--eecCcccccCCCCEEECcC
Confidence 54421 1111000 122345556666666554322 1111145566666666655
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.40 E-value=3.5e-07 Score=85.60 Aligned_cols=252 Identities=13% Similarity=0.134 Sum_probs=153.2
Q ss_pred CCcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCccc
Q 046658 80 GNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMK 159 (413)
Q Consensus 80 ~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~ 159 (413)
+.++.+.+....-.+ +.. .....++++|++....- ..++. +..+++|++|++.+|.....++....+++|+
T Consensus 88 ~~L~~L~L~~n~i~~---~~~---~~~l~~L~~L~l~~n~i--~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~ 158 (347)
T 4fmz_A 88 VKLTNLYIGTNKITD---ISA---LQNLTNLRELYLNEDNI--SDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLN 158 (347)
T ss_dssp TTCCEEECCSSCCCC---CGG---GTTCTTCSEEECTTSCC--CCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCC
T ss_pred CcCCEEEccCCcccC---chH---HcCCCcCCEEECcCCcc--cCchh-hccCCceeEEECCCCCCcccccchhhCCCCc
Confidence 357777777543222 111 12236788888875442 23444 6678999999999985444333577899999
Q ss_pred EEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeE
Q 046658 160 VLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQC 239 (413)
Q Consensus 160 ~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~ 239 (413)
+|++.++.+.+..- +..++.|++|.+.+|.. .++.. ....++|+.|.+. ++....... ....++|++
T Consensus 159 ~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~-----~n~l~~~~~--~~~~~~L~~ 225 (347)
T 4fmz_A 159 YLTVTESKVKDVTP---IANLTDLYSLSLNYNQI-EDISP--LASLTSLHYFTAY-----VNQITDITP--VANMTRLNS 225 (347)
T ss_dssp EEECCSSCCCCCGG---GGGCTTCSEEECTTSCC-CCCGG--GGGCTTCCEEECC-----SSCCCCCGG--GGGCTTCCE
T ss_pred EEEecCCCcCCchh---hccCCCCCEEEccCCcc-ccccc--ccCCCccceeecc-----cCCCCCCch--hhcCCcCCE
Confidence 99999887732211 67899999999998876 33332 1234778888888 765432111 235678999
Q ss_pred EEEeecccc-eeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEe
Q 046658 240 LHIIADRLG-SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLV 318 (413)
Q Consensus 240 L~~~~~~~~-~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i 318 (413)
|+++++... ...+..+++|+.+++.... +.. ...+..+++|++|.+..+.... + ..+..+|+|+.|.+
T Consensus 226 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~------l~~--~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 226 LKIGNNKITDLSPLANLSQLTWLEIGTNQ------ISD--INAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFL 294 (347)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSC------CCC--CGGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEEC
T ss_pred EEccCCccCCCcchhcCCCCCEEECCCCc------cCC--ChhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEEC
Confidence 999886553 2226778888887764311 000 1224467788888887765431 1 24678888888888
Q ss_pred ccccceecccccCCccccCccCcccccceeEEEEEeec--CCHhHHHHHHHHHhcCCCCceEEEEe
Q 046658 319 DKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQ--GDEDEQRVIEYFLQQCKCLEVMIINC 382 (413)
Q Consensus 319 ~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~--~~~~~~~l~~~ll~~a~~Le~l~i~~ 382 (413)
.......... ..... ..+|+.+.+.+-. +... +...+.|+++.+..
T Consensus 295 ~~n~l~~~~~--------~~l~~--l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 295 NNNQLGNEDM--------EVIGG--LTNLTTLFLSQNHITDIRP--------LASLSKMDSADFAN 342 (347)
T ss_dssp CSSCCCGGGH--------HHHHT--CTTCSEEECCSSSCCCCGG--------GGGCTTCSEESSSC
T ss_pred cCCcCCCcCh--------hHhhc--cccCCEEEccCCccccccC--------hhhhhccceeehhh
Confidence 7732221110 00111 2567777765432 2111 56677777776654
No 40
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.39 E-value=3.7e-07 Score=84.15 Aligned_cols=166 Identities=13% Similarity=0.154 Sum_probs=104.7
Q ss_pred hCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
..+++.|+++...- ..++. +..+++|++|+|.+|.....+ ....+++|++|+|.++.+++- .. +..++.|++|
T Consensus 62 l~~L~~L~L~~n~i--~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L 134 (308)
T 1h6u_A 62 LNNLIGLELKDNQI--TDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVL 134 (308)
T ss_dssp CTTCCEEECCSSCC--CCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEE
T ss_pred cCCCCEEEccCCcC--CCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEE
Confidence 36788888875542 33444 666788888888888766655 566788888888888877331 12 6778888888
Q ss_pred EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-eeeeecCCCceEEEEEe
Q 046658 187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVVHI 265 (413)
Q Consensus 187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i~~ 265 (413)
.+.+|.. ..+.. + ...++|+.|.+. +|....- .. ....++|+.|+++++... ...+..+++|+.+++..
T Consensus 135 ~l~~n~l-~~~~~-l-~~l~~L~~L~l~-----~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 135 YLDLNQI-TNISP-L-AGLTNLQYLSIG-----NAQVSDL-TP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKN 204 (308)
T ss_dssp ECCSSCC-CCCGG-G-GGCTTCCEEECC-----SSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTT
T ss_pred ECCCCcc-CcCcc-c-cCCCCccEEEcc-----CCcCCCC-hh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccC
Confidence 8888876 33322 1 134678888888 7754321 11 224678888888875443 22366777887776632
Q ss_pred ecceeEEEecccCcccCCCCCCeeEEEEEeCC
Q 046658 266 SYAEWSQAVDQCYDNFCPSFSELTFLEVKLAG 297 (413)
Q Consensus 266 ~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~ 297 (413)
.. +.. ...+..+++|+.|.+..+.
T Consensus 205 N~------l~~--~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 205 NQ------ISD--VSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp SC------CCB--CGGGTTCTTCCEEEEEEEE
T ss_pred Cc------cCc--cccccCCCCCCEEEccCCe
Confidence 10 000 0123466788888887754
No 41
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.39 E-value=2.1e-07 Score=84.67 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=107.8
Q ss_pred eeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeee-cCCCCcc
Q 046658 122 RVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYF-DADDSRT 199 (413)
Q Consensus 122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~-~~~~~~~ 199 (413)
...+|..+ .++|++|+|.++.....++ ....+++|++|+|.+..++.- ....+..++.|++|.+.++. . ..+..
T Consensus 23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l-~~~~~ 98 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQL-RSVDP 98 (285)
T ss_dssp CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTC-CCCCT
T ss_pred cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCc-cccCH
Confidence 34455543 3689999999987777664 467899999999998876321 12345778999999999996 3 11211
Q ss_pred eEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccccee---eeecCCCceEEEEEeecceeEEEecc
Q 046658 200 NFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSY---VLEEMHCLHEAVVHISYAEWSQAVDQ 276 (413)
Q Consensus 200 ~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~---~~~~~~~L~~~~i~~~~~~l~l~~~~ 276 (413)
......++|+.|.+. ++..........-..++|++|+++++..... .+..+++|+.+++... .++ .
T Consensus 99 ~~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~----~ 167 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLD-----RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--RIS----S 167 (285)
T ss_dssp TTTTTCTTCCEEECT-----TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCC----E
T ss_pred HHhcCCcCCCEEECC-----CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC--ccc----c
Confidence 011134789999998 7764321111122467888888887544322 2455667766655321 000 0
Q ss_pred cCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 277 CYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 277 ~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
.....+..+++|++|.+..+... ...+..+..+|+|+.|.+..
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred cCHHHhcCccccCEEECCCCccc-ccCHhHccCcccccEeeCCC
Confidence 00112344566777776665432 11123345667777777665
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.38 E-value=3.3e-08 Score=100.67 Aligned_cols=144 Identities=10% Similarity=0.116 Sum_probs=88.1
Q ss_pred CCcEEEEEEECcceeeecCc--cccccccccEEEeCCcccc-ccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCc-c
Q 046658 108 QSVRELQLYLGQQNRVQLLE--TIYTSTTLEVLKLDSDCVI-NAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPC-L 183 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~-L 183 (413)
..+++|++....-. .+|. .+..+++|++|+|.+|... ..| ....+++|++|+|.++.+. .+..-+..++. |
T Consensus 305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L 379 (636)
T 4eco_A 305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQV 379 (636)
T ss_dssp GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTC
T ss_pred CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccC
Confidence 57777877765432 6777 6777788888888887766 566 6677788888888877764 33334666777 8
Q ss_pred ceEEEEeeecCCCCcceEEEe--cCccceeEEEeeecCCCCCCCCcce-------EEEecCceeEEEEeeccccee---e
Q 046658 184 EELSVHAYFDADDSRTNFIIA--SSTLKHFTLTVVIDTDNHFSEIDHT-------VMLKAPNLQCLHIIADRLGSY---V 251 (413)
Q Consensus 184 e~L~l~~~~~~~~~~~~~~i~--~~~L~~L~i~~~~~~~~~~~~~~~~-------~~~~~P~L~~L~~~~~~~~~~---~ 251 (413)
+.|.+.++.. ..+.. .... .++|+.|.+. ++........ ..+..++|++|+++++..... .
T Consensus 380 ~~L~Ls~N~l-~~lp~-~~~~~~l~~L~~L~Ls-----~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~ 452 (636)
T 4eco_A 380 ENLSFAHNKL-KYIPN-IFDAKSVSVMSAIDFS-----YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452 (636)
T ss_dssp CEEECCSSCC-SSCCS-CCCTTCSSCEEEEECC-----SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH
T ss_pred cEEEccCCcC-cccch-hhhhcccCccCEEECc-----CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHH
Confidence 8888888776 23332 1111 2367777777 6654321111 011345777777777544311 1
Q ss_pred eecCCCceEEEE
Q 046658 252 LEEMHCLHEAVV 263 (413)
Q Consensus 252 ~~~~~~L~~~~i 263 (413)
+..+++|+.+.+
T Consensus 453 ~~~l~~L~~L~L 464 (636)
T 4eco_A 453 FSTGSPLSSINL 464 (636)
T ss_dssp HHTTCCCSEEEC
T ss_pred HccCCCCCEEEC
Confidence 234566666655
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.38 E-value=1.2e-07 Score=91.93 Aligned_cols=238 Identities=13% Similarity=0.052 Sum_probs=119.5
Q ss_pred CCcEEEEEEECcceeeecC-ccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
.+++.|+++...- ..++ ..+..+++|++|+|.++.+...+. .+.++++|++|+|.+..++.- ....+..++.|++
T Consensus 64 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCE
T ss_pred CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCce
Confidence 4556666554332 2222 344556777777777775554442 345677777777776655311 1223456677777
Q ss_pred EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcce-EEEecCceeEEEEeecccc-eeeeecCCCceEEEE
Q 046658 186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHT-VMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVV 263 (413)
Q Consensus 186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~-~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i 263 (413)
|.+.++.. ..+........++|+.|.+. ++........ ..-..++|++|+++++... ...+..+++|+.+++
T Consensus 141 L~L~~N~i-~~~~~~~~~~l~~L~~L~l~-----~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 141 LWLRNNPI-ESIPSYAFNRIPSLRRLDLG-----ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDL 214 (440)
T ss_dssp EECCSCCC-CEECTTTTTTCTTCCEEECC-----CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEEC
T ss_pred eeCCCCcc-cccCHHHhhhCcccCEeCCC-----CCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEEC
Confidence 77777655 11100000123567777776 6443210000 0113567777777765442 223455566666554
Q ss_pred EeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCccc
Q 046658 264 HISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCL 343 (413)
Q Consensus 264 ~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~ 343 (413)
... .++- .....+..+++|++|.+..+... ......+..+|+|+.|++.....+... ..... .
T Consensus 215 s~N--~l~~----~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~--~ 277 (440)
T 3zyj_A 215 SGN--HLSA----IRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLP--------HDLFT--P 277 (440)
T ss_dssp TTS--CCCE----ECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCC--------TTTTS--S
T ss_pred CCC--ccCc----cChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccC--------hhHhc--c
Confidence 210 0000 00122445667777777665432 111234567788888887763222110 00111 1
Q ss_pred ccceeEEEEEe--ecCCHhHHHHHHHHHhc
Q 046658 344 LQRVKKIEIIR--VQGDEDEQRVIEYFLQQ 371 (413)
Q Consensus 344 ~~~L~~v~i~~--~~~~~~~~~l~~~ll~~ 371 (413)
..+|+.+.+.+ +.+++....+..++-+.
T Consensus 278 l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~ 307 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNCDILWLSWWIKDM 307 (440)
T ss_dssp CTTCCEEECCSSCEECSSTTHHHHHHHHTT
T ss_pred ccCCCEEEcCCCCccCCCCchHHHHHHHhc
Confidence 26788887764 34555555666555443
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.38 E-value=6.3e-09 Score=101.58 Aligned_cols=283 Identities=16% Similarity=0.153 Sum_probs=157.0
Q ss_pred CcceEEeeecCCCCcccHHHHHH-HHHhCCcEEEEEEECcce---eeecCccccccccccEEEeCCccccccCC--Cccc
Q 046658 81 NIDSFCLHCSRPIDLSSVNFWLS-SALMQSVRELQLYLGQQN---RVQLLETIYTSTTLEVLKLDSDCVINAPC--VGTC 154 (413)
Q Consensus 81 ~l~~l~l~~~~~~~~~~~~~wl~-~a~~~~v~~L~l~~~~~~---~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~ 154 (413)
.++.+.+.... .... .|.. ....++++.|+++.+.-. ...++..+..+++|++|+|+++...+... ....
T Consensus 4 ~l~~L~Ls~~~-l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 4 DIQSLDIQCEE-LSDA---RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEESCC-CCHH---HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred cceehhhhhcc-cCch---hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 36777776533 2222 2443 333578999999966532 22567777788999999999986543211 1233
Q ss_pred CC----cccEEEeeeeEeChh---hHHHHhccCCccceEEEEeeec-CCCCcce---EEEecCccceeEEEeeecCCCCC
Q 046658 155 FP----TMKVLHMQLQNLDNS---LTEKMFSACPCLEELSVHAYFD-ADDSRTN---FIIASSTLKHFTLTVVIDTDNHF 223 (413)
Q Consensus 155 ~~----~L~~L~L~~~~~~~~---~l~~l~~~cp~Le~L~l~~~~~-~~~~~~~---~~i~~~~L~~L~i~~~~~~~~~~ 223 (413)
++ +|++|+|.++.+++. .+...+..||.|++|.+.+|.. ....... +....++|++|.+. +|..
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~-----~n~l 154 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE-----YCSL 154 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT-----TSCC
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC-----CCCC
Confidence 44 799999999988553 5667788999999999999876 1111110 00113479999999 8865
Q ss_pred CCCc----ceEEEecCceeEEEEeeccccee---ee-----ecCCCceEEEEEeecceeEEEecccC----cccCCCCCC
Q 046658 224 SEID----HTVMLKAPNLQCLHIIADRLGSY---VL-----EEMHCLHEAVVHISYAEWSQAVDQCY----DNFCPSFSE 287 (413)
Q Consensus 224 ~~~~----~~~~~~~P~L~~L~~~~~~~~~~---~~-----~~~~~L~~~~i~~~~~~l~l~~~~~~----~~~~p~~~~ 287 (413)
.... ....-..|+|++|+++++..... .+ ...++|+.+.+.... +.... ...+..+++
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~------l~~~~~~~l~~~l~~~~~ 228 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG------VTSDNCRDLCGIVASKAS 228 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC------CBTTHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC------CcHHHHHHHHHHHHhCCC
Confidence 4211 11111358999999988644211 11 124566665552200 00000 001123567
Q ss_pred eeEEEEEeCCCChhhH----HHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeecCC-HhHH
Q 046658 288 LTFLEVKLAGSGWRVL----PIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGD-EDEQ 362 (413)
Q Consensus 288 L~~L~l~~~~~~~~~l----~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~-~~~~ 362 (413)
|++|+++.+.....++ ..+...+++|+.|.+.....+..+.. .-......+ .+|+.+.+.+-.-. ....
T Consensus 229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~----~l~~~l~~~--~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG----DLCRVLRAK--ESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH----HHHHHHHHC--TTCCEEECTTCCCHHHHHH
T ss_pred ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH----HHHHHHhhC--CCcceEECCCCCCchHHHH
Confidence 7777777764332222 22333577888887776322111000 000001112 56787777543322 2223
Q ss_pred HHHHHHHhcCCCCceEEEEeec
Q 046658 363 RVIEYFLQQCKCLEVMIINCKA 384 (413)
Q Consensus 363 ~l~~~ll~~a~~Le~l~i~~~~ 384 (413)
.+...+....+.|+++.+....
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHhccCCccceeeEcCCCC
Confidence 4455555556788888887654
No 45
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.38 E-value=3.9e-08 Score=88.98 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=30.5
Q ss_pred ccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 129 IYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 129 ~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
+..+++|++|+|.+|.....++ ....+++|++|+|.++.++.- ....+..++.|+.|.+.+|..
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQL 145 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCcc
Confidence 3445555555555554444432 134455555555555544210 112234455555555555543
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.37 E-value=4.5e-07 Score=88.40 Aligned_cols=179 Identities=14% Similarity=0.065 Sum_probs=87.0
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.+++.|+++...-.. +| +..+++|++|+|.+|.+...+ ...+++|++|++.+..++.- . +..++.|++|.
T Consensus 64 ~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEE
Confidence 455555555332111 22 334455555555555444432 44555566666655554221 1 44555566666
Q ss_pred EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeec
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISY 267 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~ 267 (413)
+.++.. ..+. .-..++|+.|.+. ++...... -....++|+.|+++++......+..+++|+.+.+...
T Consensus 134 l~~N~l-~~l~---l~~l~~L~~L~l~-----~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N- 201 (457)
T 3bz5_A 134 CARNTL-TEID---VSHNTQLTELDCH-----LNKKITKL--DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTN- 201 (457)
T ss_dssp CTTSCC-SCCC---CTTCTTCCEEECT-----TCSCCCCC--CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSS-
T ss_pred CCCCcc-ceec---cccCCcCCEEECC-----CCCccccc--ccccCCcCCEEECCCCccceeccccCCCCCEEECcCC-
Confidence 555544 1111 0123456666665 55322111 1113456666666665443334555666665544220
Q ss_pred ceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 268 AEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 268 ~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
......+..+++|+.|+++.+.... ++ +..+|+|+.|.+..
T Consensus 202 --------~l~~~~l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 202 --------NITKLDLNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp --------CCSCCCCTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCS
T ss_pred --------cCCeeccccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeC
Confidence 0001123456677777777654331 22 56778888888776
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.37 E-value=3.8e-07 Score=90.98 Aligned_cols=103 Identities=12% Similarity=0.184 Sum_probs=54.0
Q ss_pred CCcEEEEEEECcceeeecCcccc-ccccccEEEeCCcccccc----CCCcccCCcccEEEeeeeEeCh-hhHHHHhccCC
Q 046658 108 QSVRELQLYLGQQNRVQLLETIY-TSTTLEVLKLDSDCVINA----PCVGTCFPTMKVLHMQLQNLDN-SLTEKMFSACP 181 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp 181 (413)
..++.+++.... ...+|..++ .+++|++|+|.+|...+. +.....+++|++|+|.++.++. ......+..++
T Consensus 310 ~~L~~L~l~~n~--l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 310 EKVKRITVENSK--VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp TTCCEEEEESSC--CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred ccceEEEeccCc--cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 345555555433 234555543 466677777766654321 1123456677777777666622 22234456667
Q ss_pred ccceEEEEeeecCCCCcceEEEecCccceeEEE
Q 046658 182 CLEELSVHAYFDADDSRTNFIIASSTLKHFTLT 214 (413)
Q Consensus 182 ~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~ 214 (413)
.|++|++.+|.. ..+.. .....++|+.|.+.
T Consensus 388 ~L~~L~Ls~N~l-~~lp~-~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 388 NLTSLDISRNTF-HPMPD-SCQWPEKMRFLNLS 418 (549)
T ss_dssp TCCEEECTTCCC-CCCCS-CCCCCTTCCEEECT
T ss_pred CCCEEECCCCCC-ccCCh-hhcccccccEEECC
Confidence 777777766655 22222 11123566666666
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.36 E-value=7.3e-07 Score=84.95 Aligned_cols=193 Identities=15% Similarity=0.111 Sum_probs=95.9
Q ss_pred CCcEEEEEEECcceeeecC-ccccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
.+++.|++....- ..+| ..+..+++|++|+|.++.....|.. ...+++|++|+|.+..+..- ....+..++.|++
T Consensus 93 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 93 HTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQN 169 (390)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCE
T ss_pred CCcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCE
Confidence 4667776664432 2233 3345567777777777766555533 35677777777776655221 1223455677777
Q ss_pred EEEEeeecCCCCc--c-----eEE---------EecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-
Q 046658 186 LSVHAYFDADDSR--T-----NFI---------IASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG- 248 (413)
Q Consensus 186 L~l~~~~~~~~~~--~-----~~~---------i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~- 248 (413)
|.+.++.. .... . .+. ...++|+.|.+. ++.... .-....++|+.|++.++...
T Consensus 170 L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~-----~n~l~~---~~~~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 170 LQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS-----HNSINV---VRGPVNVELTILKLQHNNLTD 240 (390)
T ss_dssp EECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECC-----SSCCCE---EECCCCSSCCEEECCSSCCCC
T ss_pred EECCCCcC-CccccccccccceeecccccccccCCCCcceEEECC-----CCeeee---ccccccccccEEECCCCCCcc
Confidence 77766654 1110 0 000 112345555555 443321 00011345666666664332
Q ss_pred eeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 249 SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 249 ~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
...+..+++|+.+++.... +.-.. ...+..+++|++|.+..+... .+......+|+|+.|.+..
T Consensus 241 ~~~l~~l~~L~~L~Ls~n~--l~~~~----~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 241 TAWLLNYPGLVEVDLSYNE--LEKIM----YHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp CGGGGGCTTCSEEECCSSC--CCEEE----SGGGTTCSSCCEEECCSSCCC--EEECSSSCCTTCCEEECCS
T ss_pred cHHHcCCCCccEEECCCCc--CCCcC----hhHccccccCCEEECCCCcCc--ccCcccCCCCCCCEEECCC
Confidence 2335566667666553210 00000 112335567777777665432 1222235667777777766
No 49
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.34 E-value=1.5e-07 Score=80.75 Aligned_cols=58 Identities=17% Similarity=0.051 Sum_probs=33.0
Q ss_pred cccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 132 STTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
+++|++|++.++.+.+.| ....+++|++|++.++.+..- . .+..+|.|++|.+.+|..
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l 100 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDV 100 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCcc
Confidence 456666666666555555 455666666666666644211 1 344566666666666554
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.33 E-value=2.6e-07 Score=85.99 Aligned_cols=192 Identities=13% Similarity=0.115 Sum_probs=115.9
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.+++.|++....- ....|..+..+++|++|+|.++.....|. ..+++|++|++.++.++.- ....+..++.|+.|.
T Consensus 76 ~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~--~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 76 KNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVE 151 (330)
T ss_dssp TTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCSBCCS--SCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEE
T ss_pred CCCCEEECCCCcC-CeeCHHHhcCCCCCCEEECCCCcCCccCh--hhcccccEEECCCCccccc-CHhHhcCCccccEEE
Confidence 5677777765432 11225566677888888888876666552 2247888888887766322 234467788899998
Q ss_pred EEeeecCCC--C-cceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccce---eeeecCCCceEE
Q 046658 188 VHAYFDADD--S-RTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS---YVLEEMHCLHEA 261 (413)
Q Consensus 188 l~~~~~~~~--~-~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~---~~~~~~~~L~~~ 261 (413)
+.++.. .. . .. .....++|+.|.+. ++....-...+ .++|++|++.++.... ..+..+++|+.+
T Consensus 152 l~~n~l-~~~~~~~~-~~~~l~~L~~L~l~-----~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 152 LGTNPL-KSSGIENG-AFQGMKKLSYIRIA-----DTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp CCSSCC-CGGGBCTT-GGGGCTTCCEEECC-----SSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred CCCCcC-CccCcChh-hccCCCCcCEEECC-----CCccccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 888765 11 0 00 01134678888888 76543211111 2788888888755432 245677788877
Q ss_pred EEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccc
Q 046658 262 VVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKE 321 (413)
Q Consensus 262 ~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 321 (413)
++.... +.- .....+..+++|++|.+..+... .++..+..+|+|+.|.+...
T Consensus 222 ~Ls~n~--l~~----~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 222 GLSFNS--ISA----VDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp ECCSSC--CCE----ECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSS
T ss_pred ECCCCc--Cce----eChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCC
Confidence 663210 000 00112345678888888876533 33334677888998888764
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.33 E-value=2e-07 Score=94.16 Aligned_cols=126 Identities=19% Similarity=0.235 Sum_probs=68.8
Q ss_pred CCcEEEEEEECcceeeecC-ccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
.+++.|++....- ..++ ..+..+++|++|+|.+|.+...++ .+.++++|++|+|.++.++. ....++..++.|+.
T Consensus 75 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 75 RQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred CCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCE
Confidence 5666666654432 2333 245566777777777776655553 34667777777777776531 11233466777777
Q ss_pred EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658 186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~ 245 (413)
|.+.+|.. ..+........++|+.|.+. ++..... -....|+|+.|++.++
T Consensus 152 L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~-----~N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 152 LSMSNNNL-ERIEDDTFQATTSLQNLQLS-----SNRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCC-CBCCTTTTTTCTTCCEEECT-----TSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEeeCCcC-CCCChhhhhcCCcCcEEECc-----CCCCCCc---ChhhhhhhhhhhcccC
Confidence 77777755 11110000123567777776 6543321 0112456666666653
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.32 E-value=7.9e-07 Score=86.67 Aligned_cols=199 Identities=13% Similarity=0.071 Sum_probs=120.9
Q ss_pred CCcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCccc
Q 046658 80 GNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMK 159 (413)
Q Consensus 80 ~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~ 159 (413)
+.++.+.+....-.. + .......+++|+++...-.. +| +..+++|++|++.++.....+ ...+++|+
T Consensus 64 ~~L~~L~Ls~n~l~~---~----~~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~ 130 (457)
T 3bz5_A 64 TGLTKLICTSNNITT---L----DLSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLT 130 (457)
T ss_dssp TTCSEEECCSSCCSC---C----CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCC
T ss_pred CCCCEEEccCCcCCe---E----ccccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCeec--CCCCCcCC
Confidence 347777777543211 1 11123577888877544222 23 556788888888888666554 66788888
Q ss_pred EEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEE-ecCccceeEEEeeecCCCCCCCCcceEEEecCcee
Q 046658 160 VLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFII-ASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQ 238 (413)
Q Consensus 160 ~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~ 238 (413)
+|++.+..++.-. +..++.|++|.+.+|.. ... +.+ ..++|+.|.+. ++.... .. ....++|+
T Consensus 131 ~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~---~~~-~~~~~l~~L~~L~ls-----~n~l~~-l~--l~~l~~L~ 194 (457)
T 3bz5_A 131 YLNCARNTLTEID----VSHNTQLTELDCHLNKK---ITK-LDVTPQTQLTTLDCS-----FNKITE-LD--VSQNKLLN 194 (457)
T ss_dssp EEECTTSCCSCCC----CTTCTTCCEEECTTCSC---CCC-CCCTTCTTCCEEECC-----SSCCCC-CC--CTTCTTCC
T ss_pred EEECCCCccceec----cccCCcCCEEECCCCCc---ccc-cccccCCcCCEEECC-----CCccce-ec--cccCCCCC
Confidence 8888887774321 56788888888888854 222 111 23678888887 665432 11 22457788
Q ss_pred EEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEe
Q 046658 239 CLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLV 318 (413)
Q Consensus 239 ~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i 318 (413)
.|++.++......+..+++|+.+++.... .....+..+++|+.|.+..+.... +. +..+++|+.|.+
T Consensus 195 ~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~---------l~~ip~~~l~~L~~L~l~~N~l~~--~~--~~~l~~L~~L~l 261 (457)
T 3bz5_A 195 RLNCDTNNITKLDLNQNIQLTFLDCSSNK---------LTEIDVTPLTQLTYFDCSVNPLTE--LD--VSTLSKLTTLHC 261 (457)
T ss_dssp EEECCSSCCSCCCCTTCTTCSEEECCSSC---------CSCCCCTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEEC
T ss_pred EEECcCCcCCeeccccCCCCCEEECcCCc---------ccccCccccCCCCEEEeeCCcCCC--cC--HHHCCCCCEEec
Confidence 88888766555567777888877663210 000113356678888887765331 11 456778887776
Q ss_pred cc
Q 046658 319 DK 320 (413)
Q Consensus 319 ~~ 320 (413)
..
T Consensus 262 ~~ 263 (457)
T 3bz5_A 262 IQ 263 (457)
T ss_dssp TT
T ss_pred cC
Confidence 55
No 53
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.32 E-value=9.2e-08 Score=96.71 Aligned_cols=240 Identities=15% Similarity=0.168 Sum_probs=150.9
Q ss_pred CCcEEEEEEECcceeeecCc-cccccccccEEEeCCcccccc---CCCcccCCcccEEEeeeeEeChhhHHHHhccCCcc
Q 046658 108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINA---PCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCL 183 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 183 (413)
..++.|++..... ...+|. .+..+++|++|++.++..... +.....+++|++|++.++.+... ....+..++.|
T Consensus 325 ~~L~~L~l~~n~~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L 402 (606)
T 3t6q_A 325 PSLTHLSIKGNTK-RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQL 402 (606)
T ss_dssp TTCSEEECCSCSS-CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTC
T ss_pred CcCCEEECCCCCc-ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccC
Confidence 6788888876542 224444 366789999999999866544 33567899999999998866221 23345778999
Q ss_pred ceEEEEeeecC-CCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccce------eeeecCC
Q 046658 184 EELSVHAYFDA-DDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS------YVLEEMH 256 (413)
Q Consensus 184 e~L~l~~~~~~-~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~------~~~~~~~ 256 (413)
++|.+.+|... ..... .....++|+.|.+. +|.............|+|++|+++++.... ..+..++
T Consensus 403 ~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 476 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLS-----HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476 (606)
T ss_dssp SEEECTTCCEECCTTCC-TTTTCTTCCEEECT-----TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred CeEECCCCcCCCcccch-hhhCcccCCEEECC-----CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC
Confidence 99999988761 11111 01134789999998 876543212222347899999999865532 3467788
Q ss_pred CceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCcccc
Q 046658 257 CLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIES 336 (413)
Q Consensus 257 ~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~ 336 (413)
+|+.+++... .+. ......+..+++|++|+++.+... ...+..+..+++| .|.+.....+.. .+
T Consensus 477 ~L~~L~Ls~n--~l~----~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L-~L~L~~N~l~~~--------~~ 540 (606)
T 3t6q_A 477 RLEILVLSFC--DLS----SIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGI-YLNLASNHISII--------LP 540 (606)
T ss_dssp TCCEEECTTS--CCC----EECTTTTTTCTTCCEEECCSSCCC-GGGGGGGTTCCSC-EEECCSSCCCCC--------CG
T ss_pred CccEEECCCC--ccC----ccChhhhccccCCCEEECCCCccC-cCChhHhCccccc-EEECcCCccccc--------CH
Confidence 9988776321 010 010123556788999999876533 2234556778888 888776322211 00
Q ss_pred CccCcccccceeEEEEEe--ecCCHhHHHHHHHHHhcCC
Q 046658 337 DCVPQCLLQRVKKIEIIR--VQGDEDEQRVIEYFLQQCK 373 (413)
Q Consensus 337 ~~~~~c~~~~L~~v~i~~--~~~~~~~~~l~~~ll~~a~ 373 (413)
.... ...+|+.+.+.+ +.+.+....++.++-++..
T Consensus 541 ~~~~--~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~ 577 (606)
T 3t6q_A 541 SLLP--ILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQ 577 (606)
T ss_dssp GGHH--HHHTSSEEECTTCCEECSGGGHHHHHHHHHCGG
T ss_pred hhcc--cCCCCCEEeCCCCCccccCCcHHHHHHHHhCcc
Confidence 1111 126788888764 4577777888887776543
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.31 E-value=8.5e-09 Score=100.64 Aligned_cols=277 Identities=15% Similarity=0.124 Sum_probs=143.0
Q ss_pred CcceEEeeecCCCCcccHHHHHHHHH-hCCcEEEEEEECccee---eecCcccc-ccccccEEEeCCcccccc-----CC
Q 046658 81 NIDSFCLHCSRPIDLSSVNFWLSSAL-MQSVRELQLYLGQQNR---VQLLETIY-TSTTLEVLKLDSDCVINA-----PC 150 (413)
Q Consensus 81 ~l~~l~l~~~~~~~~~~~~~wl~~a~-~~~v~~L~l~~~~~~~---~~lp~~~~-~~~~L~~L~L~~~~~~~~-----~~ 150 (413)
.++.+.+.... .............. ...+++|+++...-.. ..+...+. ..++|++|+|.+|...+. +.
T Consensus 143 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 143 RLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred cceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 48898887653 33222222222211 3689999988544211 12222222 235899999998865442 21
Q ss_pred CcccCCcccEEEeeeeEeChhhHHHH----hccCCccceEEEEeeecCCC-----CcceEEEecCccceeEEEeeecCCC
Q 046658 151 VGTCFPTMKVLHMQLQNLDNSLTEKM----FSACPCLEELSVHAYFDADD-----SRTNFIIASSTLKHFTLTVVIDTDN 221 (413)
Q Consensus 151 ~~~~~~~L~~L~L~~~~~~~~~l~~l----~~~cp~Le~L~l~~~~~~~~-----~~~~~~i~~~~L~~L~i~~~~~~~~ 221 (413)
....+++|++|+|.++.+++..+..+ ...++.|++|.+.+|.. .+ +.. .....++|++|.+. ++
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~-~l~~~~~L~~L~Ls-----~n 294 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDLCR-VLRAKESLKELSLA-----GN 294 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-CHHHHHHHHH-HHHHCTTCCEEECT-----TC
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC-CHHHHHHHHH-HHhhCCCcceEECC-----CC
Confidence 34468999999999988865554433 34689999999998866 21 111 11125789999998 77
Q ss_pred CCCCCcceEE-----EecCceeEEEEeecccce-------eeeecCCCceEEEEEeecceeEEEecccCc----ccCC-C
Q 046658 222 HFSEIDHTVM-----LKAPNLQCLHIIADRLGS-------YVLEEMHCLHEAVVHISYAEWSQAVDQCYD----NFCP-S 284 (413)
Q Consensus 222 ~~~~~~~~~~-----~~~P~L~~L~~~~~~~~~-------~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~----~~~p-~ 284 (413)
.......... ...|+|++|++.++.... ..+...++|+.+++.... +..... ..++ .
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~------i~~~~~~~l~~~l~~~ 368 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR------LEDAGVRELCQGLGQP 368 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB------CHHHHHHHHHHHHTST
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc------cccccHHHHHHHHcCC
Confidence 5431100000 012689999998864421 123345666665553210 000000 0011 1
Q ss_pred CCCeeEEEEEeCCCC---hhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeecCCHhH
Q 046658 285 FSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDE 361 (413)
Q Consensus 285 ~~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~ 361 (413)
.++|++|.+..+... ...++..+..+|+|+.|.+.....+..+... .. ...+. ...+|+.+.+.+.......
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~--l~--~~l~~-~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ--LV--ESVRQ-PGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHH--HH--HHHTS-TTCCCCEEECTTCCCCHHH
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHH--HH--HHhcc-CCcchhheeecccccCHHH
Confidence 346777776665543 2345555666777777776653222111000 00 00000 0124566665555554444
Q ss_pred HHHHHHHHhcCCCCc
Q 046658 362 QRVIEYFLQQCKCLE 376 (413)
Q Consensus 362 ~~l~~~ll~~a~~Le 376 (413)
.+.++.+.+.-|.|+
T Consensus 444 ~~~l~~l~~~~p~l~ 458 (461)
T 1z7x_W 444 EDRLQALEKDKPSLR 458 (461)
T ss_dssp HHHHHHHHHHCTTSE
T ss_pred HHHHHHHhccCCCcE
Confidence 445555555555554
No 55
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=1.5e-07 Score=98.48 Aligned_cols=189 Identities=11% Similarity=0.096 Sum_probs=110.4
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCcc-ccc--cCCCc-------ccCCcccEEEeeeeEeChhhHHH--
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDC-VIN--APCVG-------TCFPTMKVLHMQLQNLDNSLTEK-- 175 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~-~~~--~~~~~-------~~~~~L~~L~L~~~~~~~~~l~~-- 175 (413)
.+++.|+++.+.- ...+|..+..+++|++|+|.+|. +.. .|... ..+++|++|+|.++.+. .+..
T Consensus 491 ~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~ 567 (876)
T 4ecn_A 491 KDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASA 567 (876)
T ss_dssp TTCCEEEEESCTT-CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHH
T ss_pred CCCCEEECcCCCC-CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChh
Confidence 5688888876542 34567777788888888888875 332 33212 24558888888887775 3444
Q ss_pred HhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCc-eeEEEEeeccccee--ee
Q 046658 176 MFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPN-LQCLHIIADRLGSY--VL 252 (413)
Q Consensus 176 l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~-L~~L~~~~~~~~~~--~~ 252 (413)
.+..++.|+.|.+.+|.. ..+.. + ...++|+.|.+. ++.... ........++ |+.|+++++....+ .+
T Consensus 568 ~l~~L~~L~~L~Ls~N~l-~~lp~-~-~~L~~L~~L~Ls-----~N~l~~-lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~ 638 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKV-RHLEA-F-GTNVKLTDLKLD-----YNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638 (876)
T ss_dssp HHTTCTTCCEEECTTSCC-CBCCC-C-CTTSEESEEECC-----SSCCSC-CCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred hhhcCCCCCEEECCCCCc-ccchh-h-cCCCcceEEECc-----CCcccc-chHHHhhccccCCEEECcCCCCCcCchhh
Confidence 567788888888888776 22221 1 123678888887 665431 1112234566 88888887544311 11
Q ss_pred ecC--CCceEEEEEeecceeEEEecccCc-ccCC---------CCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 253 EEM--HCLHEAVVHISYAEWSQAVDQCYD-NFCP---------SFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 253 ~~~--~~L~~~~i~~~~~~l~l~~~~~~~-~~~p---------~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
... ++|+.+.+.. ... ...| ...+|+.|.+..+... ..-..++..+|+|+.|.+..
T Consensus 639 ~~~~~~~L~~L~Ls~-----------N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSY-----------NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN 706 (876)
T ss_dssp CTTCSSCEEEEECCS-----------SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred hccccCCCCEEECcC-----------CcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC
Confidence 222 2255554422 100 1112 2237888888776543 11233456788888888776
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.29 E-value=9.5e-07 Score=89.18 Aligned_cols=83 Identities=19% Similarity=0.219 Sum_probs=46.0
Q ss_pred CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
.+++.|++.... ...+|+ .+..+++|++|+|.+|.+...|+. +.++++|++|+|.++.+..- ....+..++.|+.
T Consensus 99 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 175 (597)
T 3oja_B 99 HTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQN 175 (597)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCE
T ss_pred CCCCEEECCCCc--CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcE
Confidence 456666666443 223333 334566777777777665555533 35667777777776655221 1123455666666
Q ss_pred EEEEeeec
Q 046658 186 LSVHAYFD 193 (413)
Q Consensus 186 L~l~~~~~ 193 (413)
|.+.+|..
T Consensus 176 L~L~~N~l 183 (597)
T 3oja_B 176 LQLSSNRL 183 (597)
T ss_dssp EECTTSCC
T ss_pred EECcCCCC
Confidence 66666544
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.29 E-value=1.6e-07 Score=85.00 Aligned_cols=200 Identities=17% Similarity=0.148 Sum_probs=102.2
Q ss_pred CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
.++++|+++... ...++. .+..+++|++|+|.++.....+. ....+++|++|+|.+..++.-. ...+..++.|++
T Consensus 28 ~~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCE
T ss_pred CCccEEECCCCc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccE
Confidence 356666655333 223333 45556778888887776555543 3556777888888777652211 123456777888
Q ss_pred EEEEeeecCCCCcceEEE-ecCccceeEEEeeecCCCCCCCC-cceEEEecCceeEEEEeeccccee---eeecCCCceE
Q 046658 186 LSVHAYFDADDSRTNFII-ASSTLKHFTLTVVIDTDNHFSEI-DHTVMLKAPNLQCLHIIADRLGSY---VLEEMHCLHE 260 (413)
Q Consensus 186 L~l~~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~-~~~~~~~~P~L~~L~~~~~~~~~~---~~~~~~~L~~ 260 (413)
|.+.++.. ..+.. ..+ ..++|+.|.+. ++..... ........++|++|+++++..... .+..+++|+.
T Consensus 105 L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~-----~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 105 LVAVETNL-ASLEN-FPIGHLKTLKELNVA-----HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp EECTTSCC-CCSTT-CCCTTCTTCCEEECC-----SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred EECCCCCc-cccCc-hhcccCCCCCEEECc-----CCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 88777765 22222 111 23677777777 6543320 011122346777777777543221 1222233321
Q ss_pred EEEEeecceeEEEecccCccc----CCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecccccee
Q 046658 261 AVVHISYAEWSQAVDQCYDNF----CPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFE 325 (413)
Q Consensus 261 ~~i~~~~~~l~l~~~~~~~~~----~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~ 325 (413)
+.+ .+.++...... .....+|++|.+..+... .....++..+++|+.|.+...++..
T Consensus 178 l~l-------~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 178 LNL-------SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCE-------EEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cce-------eeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccc
Confidence 110 11111111000 112236888888765532 1112345678888888887754443
No 58
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.27 E-value=1.9e-07 Score=80.06 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=44.0
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.+++.+++....- ..+| .+..+++|++|.+.+|.....+ ....+++|++|++.++.+++.... .+..+|.|+.|.
T Consensus 44 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCC--SCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCCEEE
T ss_pred CCccEEeccCCCc--cChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccCh-hhcCCCCCCEEE
Confidence 4556666654332 2334 3455666666666666443333 455566666666666655332221 234566666666
Q ss_pred EEeeec
Q 046658 188 VHAYFD 193 (413)
Q Consensus 188 l~~~~~ 193 (413)
+.+|..
T Consensus 119 Ls~n~i 124 (197)
T 4ezg_A 119 ISHSAH 124 (197)
T ss_dssp CCSSBC
T ss_pred ecCCcc
Confidence 666654
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.24 E-value=2e-07 Score=85.25 Aligned_cols=14 Identities=7% Similarity=0.256 Sum_probs=6.1
Q ss_pred cCCcccEEEeeeeE
Q 046658 154 CFPTMKVLHMQLQN 167 (413)
Q Consensus 154 ~~~~L~~L~L~~~~ 167 (413)
.+++|++|+|.+..
T Consensus 53 ~l~~L~~L~L~~n~ 66 (290)
T 1p9a_G 53 PYTRLTQLNLDRAE 66 (290)
T ss_dssp TCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCCc
Confidence 34444444444433
No 60
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.24 E-value=2.6e-08 Score=94.16 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=49.5
Q ss_pred CCeeEEEEEeCCCC---hhhHHHHHhc-CCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeec---CC
Q 046658 286 SELTFLEVKLAGSG---WRVLPIILHS-SPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQ---GD 358 (413)
Q Consensus 286 ~~L~~L~l~~~~~~---~~~l~~ll~~-~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~---~~ 358 (413)
.+|++|+++.+... ...+...+.. +++|+.|.+.....+..+...- . .... ...+|+.+.+.+-. -.
T Consensus 196 ~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--~--~~~~--~l~~L~~L~L~~n~l~~i~ 269 (362)
T 3goz_A 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL--K--LLKD--SLKHLQTVYLDYDIVKNMS 269 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH--H--HTTT--TTTTCSEEEEEHHHHTTCC
T ss_pred CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH--H--HHHh--cCCCccEEEeccCCccccC
Confidence 48999999887643 3446666666 5699999998743322211000 0 0001 12679999887654 22
Q ss_pred HhHHHHHHHHHhcCCCCceEEEEeec
Q 046658 359 EDEQRVIEYFLQQCKCLEVMIINCKA 384 (413)
Q Consensus 359 ~~~~~l~~~ll~~a~~Le~l~i~~~~ 384 (413)
...+..+..-+.+.+.|+.+.+..+.
T Consensus 270 ~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 270 KEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHHHhccCCceEEEecCCCc
Confidence 22233333333444445555554443
No 61
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.23 E-value=6.5e-07 Score=83.23 Aligned_cols=219 Identities=12% Similarity=0.074 Sum_probs=138.1
Q ss_pred CCcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-CcccCCcc
Q 046658 80 GNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTM 158 (413)
Q Consensus 80 ~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L 158 (413)
+.++.+.+....-... ....+ ....+++.|+++...- ..+|..++ ++|++|++.++.....+. ...++++|
T Consensus 76 ~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~Ls~n~l--~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 76 KNLHTLILINNKISKI--SPGAF--APLVKLERLYLSKNQL--KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQM 147 (330)
T ss_dssp TTCCEEECCSSCCCCB--CTTTT--TTCTTCCEEECCSSCC--SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred CCCCEEECCCCcCCee--CHHHh--cCCCCCCEEECCCCcC--CccChhhc--ccccEEECCCCcccccCHhHhcCCccc
Confidence 3578888875432110 00111 1135789999876542 35676655 799999999987766653 35679999
Q ss_pred cEEEeeeeEeC-hhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCce
Q 046658 159 KVLHMQLQNLD-NSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNL 237 (413)
Q Consensus 159 ~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L 237 (413)
++|++.+..++ .......+..++.|++|.+.++.. ..+.. ...++|+.|.+. ++.............++|
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~---~~~~~L~~L~l~-----~n~l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ---GLPPSLTELHLD-----GNKITKVDAASLKGLNNL 218 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCS---SCCTTCSEEECT-----TSCCCEECTGGGTTCTTC
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCc---cccccCCEEECC-----CCcCCccCHHHhcCCCCC
Confidence 99999998874 333455678899999999999877 33332 123789999998 776432111112246899
Q ss_pred eEEEEeeccccee---eeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCC---hhhHH--HHHhc
Q 046658 238 QCLHIIADRLGSY---VLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG---WRVLP--IILHS 309 (413)
Q Consensus 238 ~~L~~~~~~~~~~---~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~---~~~l~--~ll~~ 309 (413)
++|+++++..... .+..+++|+.+++.... +. .. ...+..+++|++|.+..+... ...+. .....
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~----~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~ 291 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNK--LV----KV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291 (330)
T ss_dssp CEEECCSSCCCEECTTTGGGSTTCCEEECCSSC--CS----SC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred CEEECCCCcCceeChhhccCCCCCCEEECCCCc--Cc----cC-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccc
Confidence 9999998655422 46778899887774311 00 00 112346788999999887643 11111 11223
Q ss_pred CCCCceEEecccc
Q 046658 310 SPNLERLLVDKEC 322 (413)
Q Consensus 310 ~p~L~~L~i~~~~ 322 (413)
.+.|+.|.+.+.+
T Consensus 292 ~~~l~~l~l~~N~ 304 (330)
T 1xku_A 292 KASYSGVSLFSNP 304 (330)
T ss_dssp SCCCSEEECCSSS
T ss_pred cccccceEeecCc
Confidence 5788899887743
No 62
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.23 E-value=8.2e-08 Score=91.47 Aligned_cols=177 Identities=11% Similarity=0.097 Sum_probs=107.4
Q ss_pred CCcceEEeeecCCCCcccHHHHHHHHH--hCCcEEEEEEECcc--eeeecCcc-------ccccccccEEEeCCccccc-
Q 046658 80 GNIDSFCLHCSRPIDLSSVNFWLSSAL--MQSVRELQLYLGQQ--NRVQLLET-------IYTSTTLEVLKLDSDCVIN- 147 (413)
Q Consensus 80 ~~l~~l~l~~~~~~~~~~~~~wl~~a~--~~~v~~L~l~~~~~--~~~~lp~~-------~~~~~~L~~L~L~~~~~~~- 147 (413)
+.++.+.+.... .... ....+..+. .++++.|+++.... -...+|.. +..+++|++|+|++|.+.+
T Consensus 32 ~~L~~L~L~~n~-i~~~-~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 32 DSVKEIVLSGNT-IGTE-AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp SCCCEEECTTSE-ECHH-HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred CCccEEECCCCC-CCHH-HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 348888887542 2211 122232222 36899999885421 11123333 3678999999999987654
Q ss_pred ----cCCCcccCCcccEEEeeeeEeCh---hhHHHHhccC---------CccceEEEEeeecC-CCCcce--EEEecCcc
Q 046658 148 ----APCVGTCFPTMKVLHMQLQNLDN---SLTEKMFSAC---------PCLEELSVHAYFDA-DDSRTN--FIIASSTL 208 (413)
Q Consensus 148 ----~~~~~~~~~~L~~L~L~~~~~~~---~~l~~l~~~c---------p~Le~L~l~~~~~~-~~~~~~--~~i~~~~L 208 (413)
++.....+++|++|+|.++.+++ ..+...+..+ |.|++|.+.+|... ..+... .....++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 22245678999999999998843 3455555556 99999999999761 122210 01145799
Q ss_pred ceeEEEeeecCCCCCCCC----cce-EEEecCceeEEEEeecccc-------eeeeecCCCceEEEE
Q 046658 209 KHFTLTVVIDTDNHFSEI----DHT-VMLKAPNLQCLHIIADRLG-------SYVLEEMHCLHEAVV 263 (413)
Q Consensus 209 ~~L~i~~~~~~~~~~~~~----~~~-~~~~~P~L~~L~~~~~~~~-------~~~~~~~~~L~~~~i 263 (413)
+.|.+. +|..... ... .....|+|++|+++++..+ ...+..+++|+.+.+
T Consensus 190 ~~L~L~-----~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 190 HTVKMV-----QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp CEEECC-----SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CEEECc-----CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 999999 8865310 000 1224688999999886542 112445566665544
No 63
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.21 E-value=5.2e-07 Score=91.82 Aligned_cols=195 Identities=13% Similarity=0.179 Sum_probs=119.1
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCc-ccEEEeeeeEeChhhHHHHhcc--CCccc
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPT-MKVLHMQLQNLDNSLTEKMFSA--CPCLE 184 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~~~l~~l~~~--cp~Le 184 (413)
..++.|+++...- ...+| .+..+++|++|.|.+|.....|.....+++ |++|+|.+..++ .+...+.. ++.|+
T Consensus 330 ~~L~~L~L~~N~l-~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 330 KKLGMLECLYNQL-EGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMS 405 (636)
T ss_dssp TTCCEEECCSCCC-EEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEE
T ss_pred CCCCEEeCcCCcC-ccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccC
Confidence 5788888875543 22566 667789999999999877777766788888 999999988774 23333433 34899
Q ss_pred eEEEEeeecCCCCcceEE------EecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceee---e---
Q 046658 185 ELSVHAYFDADDSRTNFI------IASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYV---L--- 252 (413)
Q Consensus 185 ~L~l~~~~~~~~~~~~~~------i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~---~--- 252 (413)
.|.+.+|.........+. ...++|+.|.+. ++....-...+.-..++|++|+++++...... +
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls-----~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS-----NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC-----SSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECc-----CCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence 999998876111111010 134578888888 77654211111113578888888885443111 1
Q ss_pred ----ecCCCceEEEEEeecceeEEEecccCcccCC--CCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 253 ----EEMHCLHEAVVHISYAEWSQAVDQCYDNFCP--SFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 253 ----~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p--~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
.++++|+.+++... .++ .+ ...+. .+++|++|.++.+... .++.-+..+++|+.|.+..
T Consensus 481 ~~~~~~l~~L~~L~Ls~N--~l~-~l----p~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFN--KLT-KL----SDDFRATTLPYLVGIDLSYNSFS--KFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp TEECTTGGGCCEEECCSS--CCC-BC----CGGGSTTTCTTCCEEECCSSCCS--SCCCGGGGCSSCCEEECCS
T ss_pred cccccccCCccEEECcCC--cCC-cc----ChhhhhccCCCcCEEECCCCCCC--CcChhhhcCCCCCEEECCC
Confidence 11226776655321 111 00 01122 5678888888776533 2444566788888888854
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.21 E-value=1.2e-06 Score=88.51 Aligned_cols=197 Identities=13% Similarity=0.032 Sum_probs=109.1
Q ss_pred CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
..+++|+++...- ..++. .+..+++|++|+|.+|.....++ .+.++++|++|+|.++.+..- ....+.+++.|++
T Consensus 32 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCE
Confidence 4566666654432 23333 45567788888888776655533 456778888888877766221 1233566788888
Q ss_pred EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCC-CcceEEEecCceeEEEEeecccceee---eecCCCce--
Q 046658 186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSE-IDHTVMLKAPNLQCLHIIADRLGSYV---LEEMHCLH-- 259 (413)
Q Consensus 186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~-~~~~~~~~~P~L~~L~~~~~~~~~~~---~~~~~~L~-- 259 (413)
|.+.+|.. ..+........++|+.|.+. ++.... .........++|++|+++++...... +..+.+|+
T Consensus 109 L~L~~n~l-~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 109 LVAVETKL-ASLESFPIGQLITLKKLNVA-----HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182 (606)
T ss_dssp EECTTSCC-CCSSSSCCTTCTTCCEEECC-----SSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred EEccCCcc-ccccccccCCCCCCCEEeCC-----CCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence 88877765 22221011134677788777 665432 11112224577777777775332221 11111121
Q ss_pred --EEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 260 --EAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 260 --~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
.+.+ ..+.+.- .....+.. .+|++|.+..+.......+..+..+++|+.+.+..
T Consensus 183 l~~L~l--~~n~l~~----~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 183 NLSLDM--SLNPIDF----IQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp CCEEEC--TTCCCCE----ECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred cceeec--cCCCcce----eCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence 2222 1111100 00111222 37999999987766677888899999999988754
No 65
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.21 E-value=7.8e-07 Score=92.55 Aligned_cols=182 Identities=16% Similarity=0.118 Sum_probs=97.2
Q ss_pred eeecCccccccccccEEEeCCccccc-cCC--CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCc
Q 046658 122 RVQLLETIYTSTTLEVLKLDSDCVIN-APC--VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSR 198 (413)
Q Consensus 122 ~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~ 198 (413)
...+|..+..+++|++|+|++|.+.+ .|. ....+++|++|+|.++.+.......++..++.|++|++.+|.. .+..
T Consensus 89 ~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~ 167 (768)
T 3rgz_A 89 INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-SGAN 167 (768)
T ss_dssp EEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC-EEET
T ss_pred cCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc-CCcC
Confidence 34456666677777777777765542 232 4556777777777776663222223335667777777777655 1000
Q ss_pred ceE---EEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc--eeeeecCCCceEEEEEeecceeEEE
Q 046658 199 TNF---IIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG--SYVLEEMHCLHEAVVHISYAEWSQA 273 (413)
Q Consensus 199 ~~~---~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~--~~~~~~~~~L~~~~i~~~~~~l~l~ 273 (413)
... .-..++|+.|.+. ++....... . ...++|++|+++++... ...+.++++|+.+++....
T Consensus 168 ~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~-~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~------ 234 (768)
T 3rgz_A 168 VVGWVLSDGCGELKHLAIS-----GNKISGDVD-V-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK------ 234 (768)
T ss_dssp HHHHHHTTCCTTCCEEECC-----SSEEESCCB-C-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC------
T ss_pred ChhhhhhccCCCCCEEECC-----CCcccccCC-c-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc------
Confidence 000 1123567777777 654332111 1 34577777777775442 2226667777766553210
Q ss_pred ecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 274 VDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 274 ~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
+.......+..+++|++|.+..+.... .++.. .+++|+.|.+..
T Consensus 235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~--~l~~L~~L~L~~ 278 (768)
T 3rgz_A 235 LSGDFSRAISTCTELKLLNISSNQFVG-PIPPL--PLKSLQYLSLAE 278 (768)
T ss_dssp CCSCHHHHTTTCSSCCEEECCSSCCEE-SCCCC--CCTTCCEEECCS
T ss_pred CCCcccHHHhcCCCCCEEECCCCcccC-ccCcc--ccCCCCEEECcC
Confidence 000001123456677777777664320 01111 677888887766
No 66
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.19 E-value=2.2e-07 Score=77.46 Aligned_cols=129 Identities=20% Similarity=0.176 Sum_probs=72.5
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.++++|++....-....+|..+..+++|++|+|.+|.....+ ....+++|++|+|.++.+... +..++..+|.|+.|.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCS-SCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChh-hhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEe
Confidence 345666665443221245666666777888888777655552 566677788888877776332 455556677888888
Q ss_pred EEeeecCCCCcce-EEEecCccceeEEEeeecCCCCCCCCcc---eEEEecCceeEEEEee
Q 046658 188 VHAYFDADDSRTN-FIIASSTLKHFTLTVVIDTDNHFSEIDH---TVMLKAPNLQCLHIIA 244 (413)
Q Consensus 188 l~~~~~~~~~~~~-~~i~~~~L~~L~i~~~~~~~~~~~~~~~---~~~~~~P~L~~L~~~~ 244 (413)
+.+|.. .++... .....++|+.|.+. ++....... ......|+|++|++.+
T Consensus 102 Ls~N~l-~~~~~~~~l~~l~~L~~L~l~-----~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 102 LSGNKL-KDISTLEPLKKLECLKSLDLF-----NCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CBSSSC-CSSGGGGGGSSCSCCCEEECC-----SSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ccCCcc-CcchhHHHHhcCCCCCEEEee-----CCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 877765 322210 11123567777776 554332111 1122345666665555
No 67
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.18 E-value=1.1e-06 Score=80.31 Aligned_cols=120 Identities=14% Similarity=0.158 Sum_probs=65.7
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
..++.|.+....- ..++ .+..+++|++|+|.+|...+.+ ....+++|++|+|.+..+++ +.. +..++.|+.|.
T Consensus 46 ~~L~~L~l~~~~i--~~~~-~~~~l~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEE
T ss_pred CcccEEEccCCCc--ccCh-hHhcCCCCCEEEccCCccCCCc-ccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEE
Confidence 4566666554332 2233 2455677777777777665555 36667777777777776632 111 56677777777
Q ss_pred EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEee
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIA 244 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~ 244 (413)
+.+|.. ..+.. + ...++|+.|.+. ++....- ......++|+.|++++
T Consensus 119 L~~n~i-~~~~~-l-~~l~~L~~L~l~-----~n~l~~~--~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 119 LEHNGI-SDING-L-VHLPQLESLYLG-----NNKITDI--TVLSRLTKLDTLSLED 165 (291)
T ss_dssp CTTSCC-CCCGG-G-GGCTTCCEEECC-----SSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CCCCcC-CCChh-h-cCCCCCCEEEcc-----CCcCCcc--hhhccCCCCCEEEccC
Confidence 777765 32322 1 123567777776 5543221 1111245555555555
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.18 E-value=3.8e-06 Score=84.75 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=25.6
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL 168 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 168 (413)
.+++.|++..+.- ..+|. .+++|++|+|++|.+..+|. .+++|++|+|.++.+
T Consensus 61 ~~L~~L~L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 61 AHITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL 113 (622)
T ss_dssp TTCSEEEECSCCC--SCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC
T ss_pred CCCcEEEecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC
Confidence 3455555554321 23333 23555556665555444441 455555555555544
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.17 E-value=5.1e-07 Score=81.47 Aligned_cols=180 Identities=17% Similarity=0.170 Sum_probs=102.5
Q ss_pred CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
.++++|+++... ...+|. .+..+++|++|+|.++.....+.. +..+++|++|+|.+..+..- ....+..++.|++
T Consensus 37 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCE
T ss_pred CCCCEEECcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCE
Confidence 456777776543 233443 456778999999998877666643 46789999999998877321 1244577899999
Q ss_pred EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEe
Q 046658 186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHI 265 (413)
Q Consensus 186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~ 265 (413)
|.+.++.. ..+........++|+.|.+. ++....-.....-..++|+.|++.++......
T Consensus 114 L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------- 173 (270)
T 2o6q_A 114 LRLDRNQL-KSLPPRVFDSLTKLTYLSLG-----YNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-------------- 173 (270)
T ss_dssp EECCSSCC-CCCCTTTTTTCTTCCEEECC-----SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--------------
T ss_pred EECCCCcc-CeeCHHHhCcCcCCCEEECC-----CCcCCccCHhHccCCcccceeEecCCcCcEeC--------------
Confidence 99988876 22211000124678888887 66433211111113466666666653221100
Q ss_pred ecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccce
Q 046658 266 SYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWF 324 (413)
Q Consensus 266 ~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~ 324 (413)
...+..+++|++|.+..+... ......+..+++|+.|.+...++.
T Consensus 174 -------------~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 -------------EGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp -------------TTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -------------hhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence 112334556666666655322 111123456777777777765443
No 70
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.17 E-value=4.2e-07 Score=88.38 Aligned_cols=143 Identities=13% Similarity=0.140 Sum_probs=83.8
Q ss_pred CccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccccee---eeecCCCceEEEEEeecceeEEEecccCcccC
Q 046658 206 STLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSY---VLEEMHCLHEAVVHISYAEWSQAVDQCYDNFC 282 (413)
Q Consensus 206 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~---~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~ 282 (413)
++|+.|.+. ++.............++|++|+++++..... .+.++++|+.+++... .+. ......+
T Consensus 275 ~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~----~~~~~~~ 343 (455)
T 3v47_A 275 SGVKTCDLS-----KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN--FLG----SIDSRMF 343 (455)
T ss_dssp SCCCEEECC-----SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCC----EECGGGG
T ss_pred cCceEEEec-----CccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC--ccC----CcChhHh
Confidence 579999998 7754321111122468899999988655422 4667888888776431 110 0001234
Q ss_pred CCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEe--ecCCHh
Q 046658 283 PSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIR--VQGDED 360 (413)
Q Consensus 283 p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~--~~~~~~ 360 (413)
..+++|++|.++.+... ...+..+..+|+|+.|.+.....+... ...... ..+|+.+.+.+ +.+...
T Consensus 344 ~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~--l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVP--------DGIFDR--LTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCC--------TTTTTT--CTTCCEEECCSSCBCCCTT
T ss_pred cCcccCCEEECCCCccc-ccChhhccccccccEEECCCCccccCC--------HhHhcc--CCcccEEEccCCCcccCCC
Confidence 56788999999887543 112345678899999999873322110 011112 26788888875 446666
Q ss_pred HHHHHHHHHh
Q 046658 361 EQRVIEYFLQ 370 (413)
Q Consensus 361 ~~~l~~~ll~ 370 (413)
.+......+.
T Consensus 413 ~~~~l~~~l~ 422 (455)
T 3v47_A 413 RIDYLSRWLN 422 (455)
T ss_dssp TTHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 5665544444
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.17 E-value=5.2e-07 Score=83.28 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=16.6
Q ss_pred cccccEEEeCCccccc-cCCCc--ccCCcccEEEeeeeEe
Q 046658 132 STTLEVLKLDSDCVIN-APCVG--TCFPTMKVLHMQLQNL 168 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~~-~~~~~--~~~~~L~~L~L~~~~~ 168 (413)
.++|++|+|.++...+ .|... ..+++|++|+|.+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 4455555555544332 22111 4455555555555444
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.17 E-value=1.5e-07 Score=94.35 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=90.1
Q ss_pred hCCcEEEEEEECcceeeecCccccccccccEEEeCCcccccc---CCCcccCCcccEEEeeeeEeChhhHHHHhccCCcc
Q 046658 107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINA---PCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCL 183 (413)
Q Consensus 107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 183 (413)
..+++.+.+..... ....+. ..+++|++|++.+|..... +....++++|++|++.++.+..-.- . +..|+.|
T Consensus 324 l~~L~~L~l~~n~~-~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~-~~~l~~L 398 (570)
T 2z63_A 324 LKSLKRLTFTSNKG-GNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-N-FLGLEQL 398 (570)
T ss_dssp CSSCCEEEEESCBS-CCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-E-EETCTTC
T ss_pred ccccCEEeCcCCcc-cccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-c-ccccCCC
Confidence 35788888886542 112222 5678999999998865543 2245678999999999887622111 1 6789999
Q ss_pred ceEEEEeeecCCCCc-ceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc----eeeeecCCCc
Q 046658 184 EELSVHAYFDADDSR-TNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG----SYVLEEMHCL 258 (413)
Q Consensus 184 e~L~l~~~~~~~~~~-~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~----~~~~~~~~~L 258 (413)
+.|.+.+|....... . .....++|+.|.+. +|..........-..|+|++|++.++... ...+..+++|
T Consensus 399 ~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFS-VFLSLRNLIYLDIS-----HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp CEEECTTSEEESCTTSC-TTTTCTTCCEEECT-----TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CEEEccCCccccccchh-hhhcCCCCCEEeCc-----CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 999999887611011 1 11234789999998 77643211111224689999999885331 1234445555
Q ss_pred eEEEE
Q 046658 259 HEAVV 263 (413)
Q Consensus 259 ~~~~i 263 (413)
+.+++
T Consensus 473 ~~L~l 477 (570)
T 2z63_A 473 TFLDL 477 (570)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 55444
No 73
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.17 E-value=2.7e-07 Score=85.94 Aligned_cols=194 Identities=11% Similarity=0.066 Sum_probs=109.0
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.+++.|++....- ....|..+..+++|++|+|.++.....|.. .+++|++|++.+..++.- ....+..++.|+.|.
T Consensus 78 ~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 78 QHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHLVEIPPN--LPSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIE 153 (332)
T ss_dssp TTCCEEECCSSCC-CEECGGGSTTCTTCCEEECCSSCCCSCCSS--CCTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEE
T ss_pred CCCcEEECCCCcc-CccCHhHhhCcCCCCEEECCCCcCCccCcc--ccccCCEEECCCCccCcc-CHhHhCCCccCCEEE
Confidence 4677777664432 112244556677888888877766555522 237788888877766311 123356778888888
Q ss_pred EEeeecCC-CCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccce---eeeecCCCceEEEE
Q 046658 188 VHAYFDAD-DSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS---YVLEEMHCLHEAVV 263 (413)
Q Consensus 188 l~~~~~~~-~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~---~~~~~~~~L~~~~i 263 (413)
+.++.... .... ......+|+.|.+. ++....-... -.++|++|+++++.... ..+..+++|+.+++
T Consensus 154 l~~n~l~~~~~~~-~~~~~l~L~~L~l~-----~n~l~~l~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 154 MGGNPLENSGFEP-GAFDGLKLNYLRIS-----EAKLTGIPKD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp CCSCCCBGGGSCT-TSSCSCCCSCCBCC-----SSBCSSCCSS---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred CCCCccccCCCCc-ccccCCccCEEECc-----CCCCCccCcc---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 88775510 0100 00111267777777 6654321111 12678888887754432 23566677776655
Q ss_pred EeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecccc
Q 046658 264 HISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKEC 322 (413)
Q Consensus 264 ~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 322 (413)
.... +.......+..+++|++|.+..+... .++..+..+|+|+.|.+....
T Consensus 225 ~~N~------l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 225 GHNQ------IRMIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CSSC------CCCCCTTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSC
T ss_pred CCCc------CCcCChhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCC
Confidence 3210 00010112345678888888876543 333346788999999988743
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.17 E-value=2.5e-06 Score=75.29 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=20.8
Q ss_pred CCeeEEEEEeCC-CChhhHHHHHhcC-CCCceEEecc
Q 046658 286 SELTFLEVKLAG-SGWRVLPIILHSS-PNLERLLVDK 320 (413)
Q Consensus 286 ~~L~~L~l~~~~-~~~~~l~~ll~~~-p~L~~L~i~~ 320 (413)
.+|++|.+..+. .. ..-...+..+ ++|+.|.+..
T Consensus 179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTT
T ss_pred CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCC
Confidence 467777776653 22 1112345567 8888888876
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.15 E-value=2.4e-05 Score=78.18 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=27.1
Q ss_pred CCCCCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEecc
Q 046658 283 PSFSELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 283 p~~~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~ 320 (413)
..+++|+.|.+..+... ...++..+..+++|+.|++..
T Consensus 374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 35667788877776544 445666778888888888776
No 76
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.15 E-value=8e-07 Score=89.53 Aligned_cols=121 Identities=15% Similarity=0.163 Sum_probs=70.4
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.+++.|.+.... ...+| .+..+++|+.|+|.+|.+...+ ....+++|+.|+|.++.+.+- . -+..++.|+.|.
T Consensus 43 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEE
T ss_pred CCCCEEECcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCCh-hhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEE
Confidence 455555554333 22233 3566777888888777666655 366777888888877766321 1 356677788888
Q ss_pred EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~ 245 (413)
|.+|.. ..+.. + ...++|+.|.+. +|....- ......++|+.|+++++
T Consensus 116 Ls~N~l-~~l~~-l-~~l~~L~~L~Ls-----~N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 116 LEHNGI-SDING-L-VHLPQLESLYLG-----NNKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CTTSCC-CCCGG-G-GGCTTCSEEECC-----SSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred ecCCCC-CCCcc-c-cCCCccCEEECC-----CCccCCc--hhhcccCCCCEEECcCC
Confidence 777766 33322 1 134677777777 6654321 11113456666666654
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.14 E-value=4.3e-06 Score=87.94 Aligned_cols=85 Identities=11% Similarity=-0.004 Sum_probs=50.1
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccc-cCC--CcccCCcccEEEeeeeEeChhhHHHHhccCCccc
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVIN-APC--VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLE 184 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 184 (413)
.+++.|+++...- ....|..+..+++|++|+|.+|...+ .+. ....+++|++|+|+++.+........+..++.|+
T Consensus 73 ~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 73 PNLRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp TTCCEEECTTCCC-CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCEEECCCCcC-cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 4566666654332 12235556667777777777765543 221 2556777777777777664333334456677777
Q ss_pred eEEEEeeec
Q 046658 185 ELSVHAYFD 193 (413)
Q Consensus 185 ~L~l~~~~~ 193 (413)
+|.+.++..
T Consensus 152 ~L~Ls~N~i 160 (844)
T 3j0a_A 152 SIDFSSNQI 160 (844)
T ss_dssp EEEEESSCC
T ss_pred EEECCCCcC
Confidence 777777644
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.14 E-value=5.5e-07 Score=83.01 Aligned_cols=216 Identities=13% Similarity=0.079 Sum_probs=110.3
Q ss_pred cceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccc--cccccccEEEeCCccccccCC-----Cccc
Q 046658 82 IDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETI--YTSTTLEVLKLDSDCVINAPC-----VGTC 154 (413)
Q Consensus 82 l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~~~~-----~~~~ 154 (413)
++.+.+.-.. .....+...........+++|++....- ....|..+ ...++|++|+|.++......+ ....
T Consensus 66 l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 66 VRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred eeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 5666655322 3334455555555556788888875542 12334444 556788888888775543211 1235
Q ss_pred CCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCC--CCc-ceEEEecCccceeEEEeeecCCCCCCCCcce--
Q 046658 155 FPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDAD--DSR-TNFIIASSTLKHFTLTVVIDTDNHFSEIDHT-- 229 (413)
Q Consensus 155 ~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~--~~~-~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~-- 229 (413)
+++|++|+|.++.+... ....+..++.|++|++.+|.... .+. .......++|+.|.+. +|.... ...
T Consensus 144 ~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls-----~N~l~~-l~~~~ 216 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR-----NTGMET-PTGVC 216 (310)
T ss_dssp CSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC-----SSCCCC-HHHHH
T ss_pred ccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC-----CCCCCc-hHHHH
Confidence 77888888887766221 12334567888888888875300 000 0000134677888877 665421 011
Q ss_pred --EEEecCceeEEEEeeccccee---eeecC---CCceEEEEEeecceeEEEecccCcccCC--CCCCeeEEEEEeCCCC
Q 046658 230 --VMLKAPNLQCLHIIADRLGSY---VLEEM---HCLHEAVVHISYAEWSQAVDQCYDNFCP--SFSELTFLEVKLAGSG 299 (413)
Q Consensus 230 --~~~~~P~L~~L~~~~~~~~~~---~~~~~---~~L~~~~i~~~~~~l~l~~~~~~~~~~p--~~~~L~~L~l~~~~~~ 299 (413)
+.-..++|++|+++++..... .+..+ ++|+.+.+.. ..-..+| .+++|++|+++.+...
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-----------N~l~~lp~~~~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-----------AGLEQVPKGLPAKLRVLDLSSNRLN 285 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-----------SCCCSCCSCCCSCCSCEECCSCCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-----------CCCCchhhhhcCCCCEEECCCCcCC
Confidence 111347777777777544221 12222 4555544421 0001112 1246666666655432
Q ss_pred hhhHHHHHhcCCCCceEEecc
Q 046658 300 WRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 300 ~~~l~~ll~~~p~L~~L~i~~ 320 (413)
.++ .+..+|+|+.|.+.+
T Consensus 286 --~~~-~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 286 --RAP-QPDELPEVDNLTLDG 303 (310)
T ss_dssp --SCC-CTTSCCCCSCEECSS
T ss_pred --CCc-hhhhCCCccEEECcC
Confidence 111 135556666666655
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.12 E-value=3.4e-06 Score=83.44 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=59.4
Q ss_pred ecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEE
Q 046658 124 QLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFI 202 (413)
Q Consensus 124 ~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~ 202 (413)
.+|..++ ++|++|+|++|.....++ ...++++|++|+|+++.++.- ....+..++.|++|++.++.. ..+.. .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~~lp~-~- 87 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKL-VKISC-H- 87 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCC-CEEEC-C-
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCce-eecCc-c-
Confidence 3444433 556666666655444432 344556666666665554211 122344556666666666554 22222 1
Q ss_pred EecCccceeEEEeeecCCCCCCC-CcceEEEecCceeEEEEeecccceeeeecCCCc--eEEEE
Q 046658 203 IASSTLKHFTLTVVIDTDNHFSE-IDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCL--HEAVV 263 (413)
Q Consensus 203 i~~~~L~~L~i~~~~~~~~~~~~-~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L--~~~~i 263 (413)
..++|++|.+. ++.... .........++|++|+++++......+..+++| +.+.+
T Consensus 88 -~l~~L~~L~L~-----~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 88 -PTVNLKHLDLS-----FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145 (520)
T ss_dssp -CCCCCSEEECC-----SSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEE
T ss_pred -ccCCccEEecc-----CCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEe
Confidence 33556666665 544321 000111234556666666543333333444444 44444
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.12 E-value=7.7e-07 Score=79.33 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=41.2
Q ss_pred eecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 123 VQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
..+|..+. ++|+.|+|.++.+...++ ....+++|++|+|.+..++.- ....+..++.|+.|.+.++..
T Consensus 27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCC
T ss_pred cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcc
Confidence 34554433 467777777776655543 355677777777777666321 123345667777777777665
No 81
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.11 E-value=1.2e-07 Score=77.28 Aligned_cols=102 Identities=20% Similarity=0.151 Sum_probs=60.4
Q ss_pred CcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEE
Q 046658 109 SVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSV 188 (413)
Q Consensus 109 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 188 (413)
++++|+++...-....+|..+..+++|++|++.+|.....+ ....+++|++|+|.++.++.. +...+..+|.|+.|.+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCT-TCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCch-hhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence 45555555433211245665566777888888777655553 566677788888877776332 4555666777888877
Q ss_pred EeeecCCCCc--ceEEEecCccceeEEE
Q 046658 189 HAYFDADDSR--TNFIIASSTLKHFTLT 214 (413)
Q Consensus 189 ~~~~~~~~~~--~~~~i~~~~L~~L~i~ 214 (413)
.+|.. .++. . .....++|+.|.+.
T Consensus 96 s~N~i-~~~~~~~-~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 96 SGNKI-KDLSTIE-PLKKLENLKSLDLF 121 (149)
T ss_dssp TTSCC-CSHHHHG-GGGGCTTCCEEECT
T ss_pred CCCcC-CChHHHH-HHhhCCCCCEEeCc
Confidence 77765 2221 1 11123566666666
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.11 E-value=1.1e-06 Score=90.06 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=45.5
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccc-cCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVIN-APC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
..++.+++....- ....|..+..+++|+.|+|.++.... .|+ ...++++|++|+|.++.+..- ....+..+|.|+.
T Consensus 381 ~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 381 SPLHILNLTKNKI-SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL-TRNSFALVPSLQR 458 (680)
T ss_dssp SCCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC-CTTTTTTCTTCCE
T ss_pred CcCceEECCCCCC-CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCccee-ChhhhhcCccccc
Confidence 4566776654332 11223445566778888887775532 231 455677777777776654111 0112345666666
Q ss_pred EEEEeee
Q 046658 186 LSVHAYF 192 (413)
Q Consensus 186 L~l~~~~ 192 (413)
|.+.++.
T Consensus 459 L~l~~n~ 465 (680)
T 1ziw_A 459 LMLRRVA 465 (680)
T ss_dssp EECTTSC
T ss_pred chhcccc
Confidence 6666654
No 83
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.08 E-value=1.4e-06 Score=78.23 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=72.2
Q ss_pred ccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658 129 IYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL 208 (413)
Q Consensus 129 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 208 (413)
+..+++|++|++.++.....+ ....+++|++|+|.++.+++-. . +..++.|+.|.+.+|.. ..+.. + ..++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l-~~l~~-~--~~~~L 108 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRL-KNLNG-I--PSACL 108 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCC-SCCTT-C--CCSSC
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCcc-CCcCc-c--ccCcc
Confidence 345688999999998777776 6778899999999988873321 1 77889999999999887 43443 2 12788
Q ss_pred ceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecc
Q 046658 209 KHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADR 246 (413)
Q Consensus 209 ~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~ 246 (413)
+.|.+. ++....- . .....++|+.|+++++.
T Consensus 109 ~~L~L~-----~N~l~~~-~-~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 109 SRLFLD-----NNELRDT-D-SLIHLKNLEILSIRNNK 139 (263)
T ss_dssp CEEECC-----SSCCSBS-G-GGTTCTTCCEEECTTSC
T ss_pred cEEEcc-----CCccCCC-h-hhcCcccccEEECCCCc
Confidence 999888 7754321 1 12245677777777643
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.08 E-value=4.8e-06 Score=82.43 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=26.7
Q ss_pred cccccEEEeCCccccc-cCCCcccCCcccEEEeeeeEeC-hhhHHHHhccCCccceEEEEeeec
Q 046658 132 STTLEVLKLDSDCVIN-APCVGTCFPTMKVLHMQLQNLD-NSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
+++|++|++++|.... .|.....+++|++|+|.++.++ -..+...+..++.|+.|++.+|..
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 3445555554443333 1223344445555555444442 122333344445555555544443
No 85
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.07 E-value=1.1e-06 Score=81.79 Aligned_cols=194 Identities=14% Similarity=0.112 Sum_probs=123.5
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeCh-hhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDN-SLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~ 185 (413)
.+++.|+++... ...+|..++ ++|++|++.++.....+. ...++++|++|++.+..++. ......+..+ .|+.
T Consensus 102 ~~L~~L~L~~n~--l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 102 RKLQKLYISKNH--LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp TTCCEEECCSSC--CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred CCCCEEECCCCc--CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 578899887654 236777655 799999999998777764 36789999999999988743 2223334444 8999
Q ss_pred EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccce---eeeecCCCceEEE
Q 046658 186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS---YVLEEMHCLHEAV 262 (413)
Q Consensus 186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~---~~~~~~~~L~~~~ 262 (413)
|.+.++.. ..+.. ...++|+.|.+. ++.............++|++|+++++.... ..+..+++|+.++
T Consensus 177 L~l~~n~l-~~l~~---~~~~~L~~L~l~-----~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 177 LRISEAKL-TGIPK---DLPETLNELHLD-----HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247 (332)
T ss_dssp CBCCSSBC-SSCCS---SSCSSCSCCBCC-----SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred EECcCCCC-CccCc---cccCCCCEEECC-----CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence 99998877 33322 123689999998 765432111122246889999998865432 2467788888877
Q ss_pred EEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCC---hhhHHH--HHhcCCCCceEEecccc
Q 046658 263 VHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG---WRVLPI--ILHSSPNLERLLVDKEC 322 (413)
Q Consensus 263 i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~---~~~l~~--ll~~~p~L~~L~i~~~~ 322 (413)
+.... ++ .. ...+..+++|+.|.+..+... ...+.. +....+.|+.|.+.+.+
T Consensus 248 L~~N~--l~----~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 248 LDNNK--LS----RV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CCSSC--CC----BC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CCCCc--Ce----ec-ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 64310 11 00 111335678999998876543 111111 11225788899888743
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.04 E-value=8.1e-08 Score=90.73 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=29.7
Q ss_pred CCeeEEEEEeCCCC---hhhHHHHHhcCCCCceEEeccc
Q 046658 286 SELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKE 321 (413)
Q Consensus 286 ~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~i~~~ 321 (413)
++|++|+++.+... ...+..++..+++|+.|.+...
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 48999999988754 3567778899999999999874
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.04 E-value=1.3e-05 Score=80.28 Aligned_cols=104 Identities=12% Similarity=0.084 Sum_probs=60.4
Q ss_pred cccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceE---EEecCccce
Q 046658 134 TLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNF---IIASSTLKH 210 (413)
Q Consensus 134 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~---~i~~~~L~~ 210 (413)
+|++|++.++.....+ ....+++|++|+|.+..+++. +...+..+|.|+.|.+.++.. ..+.. + ....++|+.
T Consensus 332 ~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l-~~~~~-~~~~~~~l~~L~~ 407 (562)
T 3a79_B 332 NIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGL-KNFFK-VALMTKNMSSLET 407 (562)
T ss_dssp CCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCC-CBTTH-HHHTTTTCTTCCE
T ss_pred cceEEEccCCCccccc-CccCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCc-CCccc-chhhhcCCCCCCE
Confidence 4666666665443332 225678888888888777432 223346778888888888765 22211 1 012367888
Q ss_pred eEEEeeecCCCCCCC-CcceEEEecCceeEEEEeecc
Q 046658 211 FTLTVVIDTDNHFSE-IDHTVMLKAPNLQCLHIIADR 246 (413)
Q Consensus 211 L~i~~~~~~~~~~~~-~~~~~~~~~P~L~~L~~~~~~ 246 (413)
|.+. ++.... .........++|+.|+++++.
T Consensus 408 L~l~-----~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 408 LDVS-----LNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp EECT-----TSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred EECC-----CCcCCCccChhhhcCcccCCEEECCCCC
Confidence 8887 665432 111222345777777777743
No 88
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=1.6e-06 Score=81.53 Aligned_cols=139 Identities=16% Similarity=0.159 Sum_probs=79.5
Q ss_pred cccCCcccEEEeeeeEeC--------hhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCC
Q 046658 152 GTCFPTMKVLHMQLQNLD--------NSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHF 223 (413)
Q Consensus 152 ~~~~~~L~~L~L~~~~~~--------~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~ 223 (413)
...|++|+.|.+..+... ...+..++..+|.|++|.+.++.+ ..+.. +..++|++|.+. .|..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~---~~~~~L~~L~L~-----~~~l 205 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK---KPRPNLKSLEII-----SGGL 205 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS---CBCTTCSEEEEE-----CSBC
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc---ccCCCCcEEEEe-----cCCC
Confidence 346788888888665331 234778899999999999998854 22222 347899999998 7764
Q ss_pred CCCc-ceEE-EecCceeEEEEeeccc---ceeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCC
Q 046658 224 SEID-HTVM-LKAPNLQCLHIIADRL---GSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGS 298 (413)
Q Consensus 224 ~~~~-~~~~-~~~P~L~~L~~~~~~~---~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~ 298 (413)
.... ..+. ...|+|++|+++.... +...+..+..+ .....|++|++|.+..|..
T Consensus 206 ~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~---------------------l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL---------------------FSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG---------------------SCTTTCTTCCEEEEESCTT
T ss_pred ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH---------------------HhcCCCCCcCEEeCCCCCC
Confidence 3210 0111 1468888888753110 00000000000 0012467788888877654
Q ss_pred ChhhHHHHH--hcCCCCceEEecc
Q 046658 299 GWRVLPIIL--HSSPNLERLLVDK 320 (413)
Q Consensus 299 ~~~~l~~ll--~~~p~L~~L~i~~ 320 (413)
.......+. ..+|+|++|.+..
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCS
T ss_pred chHHHHHHHhCccCCCCCEEECCC
Confidence 322222222 2567788888865
No 89
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=1.4e-06 Score=72.47 Aligned_cols=97 Identities=8% Similarity=0.077 Sum_probs=68.2
Q ss_pred eeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeE-eChhhHHHHhcc---CCccceEEEEeeec--C
Q 046658 122 RVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQN-LDNSLTEKMFSA---CPCLEELSVHAYFD--A 194 (413)
Q Consensus 122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~---cp~Le~L~l~~~~~--~ 194 (413)
...+|..-...-.|++|+|++|.+.+... ...++++|++|+|.+|. +++..+..+... ||.|++|.|.+|.. .
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 34566543344579999999986543321 35678999999999996 499988888763 78999999999975 1
Q ss_pred CCCcceEEEecCccceeEEEeeecCCCCCCC
Q 046658 195 DDSRTNFIIASSTLKHFTLTVVIDTDNHFSE 225 (413)
Q Consensus 195 ~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~ 225 (413)
.++.. + ..+++|++|.+. +|...+
T Consensus 130 ~Gl~~-L-~~~~~L~~L~L~-----~c~~It 153 (176)
T 3e4g_A 130 KGIIA-L-HHFRNLKYLFLS-----DLPGVK 153 (176)
T ss_dssp HHHHH-G-GGCTTCCEEEEE-----SCTTCC
T ss_pred HHHHH-H-hcCCCCCEEECC-----CCCCCC
Confidence 22333 2 246888888888 886543
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.01 E-value=5.1e-06 Score=81.60 Aligned_cols=163 Identities=9% Similarity=0.074 Sum_probs=113.8
Q ss_pred ccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeC-hhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658 131 TSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLD-NSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL 208 (413)
Q Consensus 131 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 208 (413)
.+++|++|+|.++.+...++ ....+++|++|+|+++.++ ... +..++.|+.|++.+|.. .. + ...++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l----~~-l-~~~~~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYV----QE-L-LVGPSI 101 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEE----EE-E-EECTTC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcC----CC-C-CCCCCc
Confidence 34689999999998776653 5678999999999998873 222 78899999999999976 22 2 234899
Q ss_pred ceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc---eeeeecCCCceEEEEEeecceeEEEecccCcccC-CC
Q 046658 209 KHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG---SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFC-PS 284 (413)
Q Consensus 209 ~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~-p~ 284 (413)
+.|.+. ++.... ......|+|+.|+++++... ...+.++++|+.+++.. +.++-... ..+ ..
T Consensus 102 ~~L~L~-----~N~l~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~----~~l~~~ 167 (487)
T 3oja_A 102 ETLHAA-----NNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL--NEIDTVNF----AELAAS 167 (487)
T ss_dssp CEEECC-----SSCCCC---EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT--SCCCEEEG----GGGGGG
T ss_pred CEEECc-----CCcCCC---CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC--CCCCCcCh----HHHhhh
Confidence 999999 887543 22234689999999996553 33567788888876632 11111111 112 24
Q ss_pred CCCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEeccc
Q 046658 285 FSELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDKE 321 (413)
Q Consensus 285 ~~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~~ 321 (413)
+++|+.|.++.+... ... ...+|+|+.|.+...
T Consensus 168 l~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSN 201 (487)
T ss_dssp TTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSS
T ss_pred CCcccEEecCCCccccccc----cccCCCCCEEECCCC
Confidence 678999999887644 211 225899999998874
No 91
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.98 E-value=2.2e-05 Score=79.25 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=77.3
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.+++.|+++... ...+|..++ ++|++|+|.+|.+..+|. .+++|++|+|+++.++. +. ...+.|++|.
T Consensus 40 ~~l~~L~ls~n~--L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LP---VLPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSC--CSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC--CC---CCCTTCCEEE
T ss_pred CCCcEEEecCCC--cCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEE
Confidence 357777776544 346777655 799999999998777763 68999999999988732 11 2679999999
Q ss_pred EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecc
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADR 246 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~ 246 (413)
+.+|.. ..+.. ..++|+.|.+. ++.... +....|+|++|+++++.
T Consensus 108 Ls~N~l-~~l~~----~l~~L~~L~L~-----~N~l~~----lp~~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 108 IFSNPL-THLPA----LPSGLCKLWIF-----GNQLTS----LPVLPPGLQELSVSDNQ 152 (622)
T ss_dssp ECSCCC-CCCCC----CCTTCCEEECC-----SSCCSC----CCCCCTTCCEEECCSSC
T ss_pred CcCCcC-CCCCC----CCCCcCEEECC-----CCCCCc----CCCCCCCCCEEECcCCc
Confidence 999876 33322 34667777777 665332 11123677777777643
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.98 E-value=4.8e-06 Score=76.92 Aligned_cols=164 Identities=9% Similarity=0.091 Sum_probs=110.3
Q ss_pred ccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeC-hhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658 131 TSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLD-NSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL 208 (413)
Q Consensus 131 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 208 (413)
.+++|++|+|.++.....++ ....+++|++|+|.++.+. ... +..++.|++|.+.+|.. .. + ...++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l----~~-l-~~~~~L 101 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYV----QE-L-LVGPSI 101 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSEE----EE-E-EECTTC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCcc----cc-c-cCCCCc
Confidence 35789999999997766653 4678999999999988773 222 67899999999999976 22 2 235899
Q ss_pred ceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc---eeeeecCCCceEEEEEeecceeEEEecccCcccCCCC
Q 046658 209 KHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG---SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSF 285 (413)
Q Consensus 209 ~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~ 285 (413)
+.|.+. ++.... ......++|+.|+++++... ...+..+++|+.+++.. +.+.-... ......+
T Consensus 102 ~~L~l~-----~n~l~~---~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~---~~~~~~l 168 (317)
T 3o53_A 102 ETLHAA-----NNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL--NEIDTVNF---AELAASS 168 (317)
T ss_dssp CEEECC-----SSCCSE---EEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT--SCCCEEEG---GGGGGGT
T ss_pred CEEECC-----CCccCC---cCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC--CCCCcccH---HHHhhcc
Confidence 999999 876542 22334688999999986553 33556678888776632 11110000 0011246
Q ss_pred CCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEeccc
Q 046658 286 SELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDKE 321 (413)
Q Consensus 286 ~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~~ 321 (413)
++|++|.++.+... ... ...+|+|+.|.+...
T Consensus 169 ~~L~~L~L~~N~l~~~~~----~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSN 201 (317)
T ss_dssp TTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSS
T ss_pred CcCCEEECCCCcCccccc----ccccccCCEEECCCC
Confidence 78999998876643 211 124789999998873
No 93
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.94 E-value=7.6e-07 Score=91.25 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=19.8
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCc
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSD 143 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~ 143 (413)
.++++|+++...-.. ..|..+..+++|++|++.+|
T Consensus 329 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TTCCEEECCSCCBCC-CCTTTTTTCTTCCEEECTTC
T ss_pred CCCCEEECCCCccCC-CChhHhccccCCcEEECCCC
Confidence 567777776443211 12333455677777777665
No 94
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.93 E-value=1.9e-06 Score=71.67 Aligned_cols=104 Identities=16% Similarity=0.153 Sum_probs=72.7
Q ss_pred cccccEEEeCCcccc--ccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCC-CcceEEEecCcc
Q 046658 132 STTLEVLKLDSDCVI--NAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADD-SRTNFIIASSTL 208 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~-~~~~~~i~~~~L 208 (413)
.++|++|++.+|... ..|.....+++|++|+|.++.++.- ..+..++.|+.|.+.+|.. .. +.. ..-..++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l-~~~~~~-~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRI-FGGLDM-LAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCC-CSCCCH-HHHHCTTC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcC-chHHHH-HHhhCCCC
Confidence 378999999999776 5664567899999999999887433 5567889999999999987 32 333 22236789
Q ss_pred ceeEEEeeecCCCCCCCCcc-eEEEecCceeEEEEeec
Q 046658 209 KHFTLTVVIDTDNHFSEIDH-TVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 209 ~~L~i~~~~~~~~~~~~~~~-~~~~~~P~L~~L~~~~~ 245 (413)
+.|.+. ++....-.. ......|+|++|++.++
T Consensus 98 ~~L~Ls-----~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 98 THLNLS-----GNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp CEEECB-----SSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred CEEecc-----CCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 999988 775432110 12224567777777764
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.90 E-value=5.3e-06 Score=75.69 Aligned_cols=123 Identities=20% Similarity=0.202 Sum_probs=86.4
Q ss_pred hCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
..+++.|+++...- ..++. +..+++|++|.|.++.....+ ....+++|++|+|.++.+++- .-+..++.|+.|
T Consensus 67 l~~L~~L~L~~n~l--~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L 139 (291)
T 1h6t_A 67 LPNVTKLFLNGNKL--TDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESL 139 (291)
T ss_dssp CTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEE
T ss_pred CCCCCEEEccCCcc--CCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCCCcCCCC---hhhcCCCCCCEE
Confidence 36788888875542 23444 677899999999998776666 577889999999998887432 235678999999
Q ss_pred EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecc
Q 046658 187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADR 246 (413)
Q Consensus 187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~ 246 (413)
.+.+|.. ..+.. ....++|+.|.+. ++...... . ....++|+.|+++++.
T Consensus 140 ~l~~n~l-~~~~~--l~~l~~L~~L~L~-----~N~l~~~~-~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 140 YLGNNKI-TDITV--LSRLTKLDTLSLE-----DNQISDIV-P-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp ECCSSCC-CCCGG--GGGCTTCSEEECC-----SSCCCCCG-G-GTTCTTCCEEECCSSC
T ss_pred EccCCcC-Ccchh--hccCCCCCEEEcc-----CCccccch-h-hcCCCccCEEECCCCc
Confidence 9999876 33322 1234789999998 77654321 1 2346778888887743
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.88 E-value=4.5e-06 Score=84.03 Aligned_cols=139 Identities=18% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.+++.|+++...- ..+++ +..+++|+.|.|.+|.+..++ ....+++|++|+|.++.+.+ + .-+..+|.|+.|.
T Consensus 65 ~~L~~L~Ls~N~l--~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 65 PNVTKLFLNGNKL--TDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLY 137 (605)
T ss_dssp TTCCEEECTTSCC--CCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEE
T ss_pred CCCCEEEeeCCCC--CCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEE
Confidence 4566666553321 22333 455677777777776655555 55667777777777666632 1 1245667777777
Q ss_pred EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-eeeeecCCCceEEEE
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVV 263 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i 263 (413)
|.+|.. ..+.. ....++|+.|.+. +|....... ....|+|+.|+++++... ...+..+++|+.+.+
T Consensus 138 Ls~N~l-~~l~~--l~~l~~L~~L~Ls-----~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 138 LGNNKI-TDITV--LSRLTKLDTLSLE-----DNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 204 (605)
T ss_dssp CCSSCC-CCCGG--GGSCTTCSEEECC-----SSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEC
T ss_pred CCCCcc-CCchh--hcccCCCCEEECc-----CCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEc
Confidence 777665 22221 1123567777776 665432111 224566777766664332 123444555555544
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.86 E-value=3.1e-06 Score=72.95 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=53.1
Q ss_pred eecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceE
Q 046658 123 VQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNF 201 (413)
Q Consensus 123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~ 201 (413)
..+|..+ .++|++|++.++.....+. ....+++|++|+|.+..++. .....+..++.|++|.+.++.. ..+....
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~ 95 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQL-QSLPNGV 95 (208)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcC-CccCHhH
Confidence 3455443 3578888888886666553 24578888888888776631 1223456778888888887765 2221100
Q ss_pred EEecCccceeEEE
Q 046658 202 IIASSTLKHFTLT 214 (413)
Q Consensus 202 ~i~~~~L~~L~i~ 214 (413)
....++|+.|.+.
T Consensus 96 ~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 96 FDKLTQLKELALN 108 (208)
T ss_dssp TTTCTTCCEEECC
T ss_pred hcCccCCCEEEcC
Confidence 0123566667666
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.86 E-value=9.7e-06 Score=74.57 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=31.2
Q ss_pred ccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEe-ChhhHH--HHhccCCccceEEEEeeec
Q 046658 131 TSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNL-DNSLTE--KMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 131 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~-~~~~l~--~l~~~cp~Le~L~l~~~~~ 193 (413)
.+++|++|+|.+|.....++ ....+++|++|+|++..+ +...+. ..+..+|.|++|.+.+|..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 45566666666555444332 334556666666665544 222221 1123455666666655544
No 99
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.85 E-value=1.4e-06 Score=78.80 Aligned_cols=115 Identities=10% Similarity=0.141 Sum_probs=73.5
Q ss_pred eeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcce
Q 046658 122 RVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTN 200 (413)
Q Consensus 122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~ 200 (413)
...+|..+. ++|++|+|.++.....+. ...++++|++|+|.++.++.- ....+..++.|+.|.+.++.. ..+...
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~ 94 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLALG 94 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCcc-CccChh
Confidence 445666543 579999999997776664 567899999999998876321 122457789999999998875 111100
Q ss_pred EEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658 201 FIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 201 ~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~ 245 (413)
.....++|+.|.+. ++....-........++|++|+++++
T Consensus 95 ~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 95 AFSGLSSLQKLVAV-----ETNLASLENFPIGHLKTLKELNVAHN 134 (276)
T ss_dssp TTTTCTTCCEEECT-----TSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred hhcCCccccEEECC-----CCCccccCchhcccCCCCCEEECcCC
Confidence 00123678888887 66543211111224567777777764
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.82 E-value=4.5e-06 Score=76.13 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=79.4
Q ss_pred CCcEEEEEEECcceeeec-CccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 108 QSVRELQLYLGQQNRVQL-LETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
.+++.|+++...- ..+ |..+..+++|++|.|.++.+...+ ....+++|++|+|++..++ .+...+..+|.|+.|
T Consensus 31 ~~l~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 31 KDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVL 105 (290)
T ss_dssp TTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEE
T ss_pred CCCCEEEcCCCcC--CccCHHHhhcCCCCCEEECCCCccCccc-CCCCCCcCCEEECCCCcCC--cCchhhccCCCCCEE
Confidence 4667776664432 222 345566788999999888776665 3467889999999888773 233455678889999
Q ss_pred EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccc
Q 046658 187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRL 247 (413)
Q Consensus 187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~ 247 (413)
.+.++.. ..+........++|+.|.+. ++....-.....-..++|+.|++.++..
T Consensus 106 ~l~~N~l-~~l~~~~~~~l~~L~~L~L~-----~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 106 DVSFNRL-TSLPLGALRGLGELQELYLK-----GNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp ECCSSCC-CCCCSSTTTTCTTCCEEECT-----TSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcC-cccCHHHHcCCCCCCEEECC-----CCCCCccChhhcccccCCCEEECCCCcC
Confidence 9988876 22211000123678888887 6654321111112356777777776433
No 101
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.81 E-value=2.3e-05 Score=72.14 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=27.9
Q ss_pred ccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeCh-hhH-HHH-hccCCccceEEEEeeec
Q 046658 133 TTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDN-SLT-EKM-FSACPCLEELSVHAYFD 193 (413)
Q Consensus 133 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~-~~l-~~l-~~~cp~Le~L~l~~~~~ 193 (413)
++|++|+|.++.....++ ....+++|++|+|++..+.. ..+ ..+ +..++.|++|.+.+|..
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 455555555554444331 34445555555555554311 111 111 14455555555555544
No 102
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.80 E-value=9e-06 Score=73.21 Aligned_cols=36 Identities=31% Similarity=0.637 Sum_probs=33.7
Q ss_pred cCCCCChHHHHHHhcCCCcccch-hhcccchhhHHHH
Q 046658 4 RISDLPDAILGRIVSFLPTKNTV-ATSVLSRRWKHVW 39 (413)
Q Consensus 4 ~is~LPd~lL~~Ils~L~~~d~~-r~s~lSrrWr~l~ 39 (413)
.+..||||+|.+||++||.++.+ +++.|||+|+.+.
T Consensus 50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 57899999999999999999999 9999999999763
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.78 E-value=3.9e-06 Score=74.69 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=77.3
Q ss_pred CCcEEEEEEECcceeeecC-ccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
.+++.|++....- ..++ ..+..+++|++|+|.++.+...++ ....+++|++|+|.+..++.- ....+..++.|++
T Consensus 35 ~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCE
Confidence 3566666654332 2233 345667999999999987766654 357789999999998877421 1244577899999
Q ss_pred EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEee
Q 046658 186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIA 244 (413)
Q Consensus 186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~ 244 (413)
|.+.++.. ..+........++|+.|.+. ++....-.....-..++|+.|++.+
T Consensus 112 L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 112 LYLGGNQL-KSLPSGVFDRLTKLKELRLN-----TNQLQSIPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp EECCSSCC-CCCCTTTTTTCTTCCEEECC-----SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEcCCCcC-CCcChhHhccCCcccEEECc-----CCcCCccCHHHcCcCcCCCEEECCC
Confidence 99998876 22221000124677777777 6543311110111245666666655
No 104
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.78 E-value=5.3e-05 Score=79.61 Aligned_cols=179 Identities=13% Similarity=0.135 Sum_probs=97.1
Q ss_pred ccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcccee
Q 046658 133 TTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHF 211 (413)
Q Consensus 133 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L 211 (413)
++|+.|+|.++.....++ ....+++|++|+|.+..++.. ....+.+++.|+.|.+.+|.. ...........++|+.|
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-ADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-CTTTTTTCSSCCEEEEESCCC-SCCCSCSCSSCTTCCEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-ChHHhcCCCCCCEEECCCCCC-CccCHHHhcCCCCCCEE
Confidence 678888888876555432 456788888888887766321 123356778888888888865 22211011234678888
Q ss_pred EEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeec-ce--------eEEEecccCccc-
Q 046658 212 TLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISY-AE--------WSQAVDQCYDNF- 281 (413)
Q Consensus 212 ~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~-~~--------l~l~~~~~~~~~- 281 (413)
.+. ++....-.....-..|+|+.|+++++... .+..+++|+.+.+.... .. ..+.++......
T Consensus 344 ~L~-----~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 344 DLQ-----KNHIAIIQDQTFKFLEKLQTLDLRDNALT--TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp ECC-----SCCCCCCCSSCSCSCCCCCEEEEETCCSC--CCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred ECC-----CCCCCccChhhhcCCCCCCEEECCCCCCC--cccCCCCcchhccCCCCcccccccccccceeecccCccccC
Confidence 887 66543211112234678888888875433 22336677776664311 00 012222111111
Q ss_pred -----CCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 282 -----CPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 282 -----~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
+..+++|+.|.+..+..........+..+++|+.|.+..
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~ 460 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEES
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCC
Confidence 114566777777665432111111233466777777665
No 105
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.77 E-value=4.1e-06 Score=74.57 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=32.5
Q ss_pred cCCCCChHHHHHHhcCCCcccchhhcccchhhHHH
Q 046658 4 RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHV 38 (413)
Q Consensus 4 ~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l 38 (413)
.|+.||+||+.+|||||+.+|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999953
No 106
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.71 E-value=6.2e-06 Score=77.49 Aligned_cols=223 Identities=16% Similarity=0.119 Sum_probs=126.4
Q ss_pred hHHHHHHHHHhccCCCCcceEEeeecCCCCc----ccHHHHHHHHH-hCCcEEEEEEECcce--------eeecCccccc
Q 046658 65 GFVDFVQTVLLRTHPGNIDSFCLHCSRPIDL----SSVNFWLSSAL-MQSVRELQLYLGQQN--------RVQLLETIYT 131 (413)
Q Consensus 65 ~~~~~v~~~L~~~~~~~l~~l~l~~~~~~~~----~~~~~wl~~a~-~~~v~~L~l~~~~~~--------~~~lp~~~~~ 131 (413)
.+.+...++|.......|+.+.+.... +++ ..+..++..+. -.+++.|.+...... ...++..+..
T Consensus 92 ~~~~~~~~fl~~~~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~ 170 (362)
T 2ra8_A 92 EGVNLMDKILKDKKLPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA 170 (362)
T ss_dssp TTCCHHHHHHHCTTGGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT
T ss_pred cHHHHHHHHhcCCCchhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhc
Confidence 444566667766665568888888432 331 12333333222 268999988532110 1134455566
Q ss_pred cccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHh-ccCCccceEEEEeee---cCCC-C---cceEEE
Q 046658 132 STTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMF-SACPCLEELSVHAYF---DADD-S---RTNFII 203 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~-~~cp~Le~L~l~~~~---~~~~-~---~~~~~i 203 (413)
+|+|++|.|.++....++ . ...++|++|+|..+.++...+..+. ..+|+|+.|.|..+. +.+. + ...+..
T Consensus 171 ~P~L~~L~L~g~~~l~l~-~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIG-K-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp CTTCCEEEEECCBTCBCC-S-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCCcEEEEeCCCCceec-c-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 799999999887434444 2 3489999999998888888787776 479999999996432 1111 1 110111
Q ss_pred -ecCccceeEEEeeecCCCCCCCCcceEE---EecCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCc
Q 046658 204 -ASSTLKHFTLTVVIDTDNHFSEIDHTVM---LKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYD 279 (413)
Q Consensus 204 -~~~~L~~L~i~~~~~~~~~~~~~~~~~~---~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~ 279 (413)
..|+|+.|.+. +|.......... ...|+|++|+++.+..+..-.. .+ .
T Consensus 249 ~~~p~Lr~L~L~-----~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~---~L--------------------~ 300 (362)
T 2ra8_A 249 DRFPNLKWLGIV-----DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR---LL--------------------L 300 (362)
T ss_dssp TTCTTCCEEEEE-----SCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH---HH--------------------H
T ss_pred CCCCCcCEEeCC-----CCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH---HH--------------------H
Confidence 25788999888 776432100000 1256777777755211100000 00 0
Q ss_pred ccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 280 NFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 280 ~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
..++.+++|++|+|+.+.....++..+-+.. .-++++..
T Consensus 301 ~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCS
T ss_pred hhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecC
Confidence 0123467899999987765544444444434 34466655
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.71 E-value=2.7e-06 Score=69.15 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=75.9
Q ss_pred cccccEEEeCCcccc--ccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccc
Q 046658 132 STTLEVLKLDSDCVI--NAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLK 209 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~ 209 (413)
.++|+.|++.+|... ..|.....+++|++|++.++.++.- ..+..++.|+.|.+.+|...+.+.. .....++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCC
Confidence 378999999999776 5665567899999999999988443 5577899999999999987221333 222368899
Q ss_pred eeEEEeeecCCCCCCCCc-ceEEEecCceeEEEEeeccc
Q 046658 210 HFTLTVVIDTDNHFSEID-HTVMLKAPNLQCLHIIADRL 247 (413)
Q Consensus 210 ~L~i~~~~~~~~~~~~~~-~~~~~~~P~L~~L~~~~~~~ 247 (413)
.|.+. ++....-. .......|+|++|+++++..
T Consensus 92 ~L~ls-----~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 92 HLNLS-----GNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp EEECT-----TSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred EEECC-----CCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 99998 77643210 01223467888888877543
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.70 E-value=0.00012 Score=72.96 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=31.1
Q ss_pred cccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcccee
Q 046658 132 STTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHF 211 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L 211 (413)
+++|++|+|.+|.+..+|. .. .+|++|+|.++.++. +.. .++.|+.|.+.+|.. ..+.. ..++|+.|
T Consensus 99 l~~L~~L~Ls~N~l~~ip~-l~--~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~L 165 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE-LP--ASLKHLDVDNNQLTM--LPE---LPALLEYINADNNQL-TMLPE----LPTSLEVL 165 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCC-SCCCC----CCTTCCEE
T ss_pred cCCCCEEEccCCCCCCcch-hh--cCCCEEECCCCcCCC--CCC---cCccccEEeCCCCcc-CcCCC----cCCCcCEE
Confidence 3455555555554444432 11 155555555554421 111 345555555555544 21211 23455555
Q ss_pred EEE
Q 046658 212 TLT 214 (413)
Q Consensus 212 ~i~ 214 (413)
.+.
T Consensus 166 ~Ls 168 (571)
T 3cvr_A 166 SVR 168 (571)
T ss_dssp ECC
T ss_pred ECC
Confidence 555
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.61 E-value=0.00013 Score=70.76 Aligned_cols=33 Identities=9% Similarity=0.162 Sum_probs=15.8
Q ss_pred hccCCccceEEEEeeecCCCCcceEEEecCccceeEEE
Q 046658 177 FSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLT 214 (413)
Q Consensus 177 ~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~ 214 (413)
+..++.|++|.+.++.. ..+.. ..++|+.|.+.
T Consensus 233 ~~~l~~L~~L~l~~N~l-~~l~~----~~~~L~~L~l~ 265 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLL-KTLPD----LPPSLEALNVR 265 (454)
T ss_dssp CTTCTTCCEEECCSSCC-SSCCS----CCTTCCEEECC
T ss_pred cCCCCCCCEEECCCCcC-Ccccc----cccccCEEECC
Confidence 34455666666655544 22211 12455555555
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.59 E-value=1.2e-05 Score=69.22 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=60.3
Q ss_pred CcEEEEEEECcceeeecCcc-ccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 109 SVRELQLYLGQQNRVQLLET-IYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 109 ~v~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
+++.|+++...- ..++.. +..+++|++|+|.++.+...+.. ...+++|++|+|.+..++.- ....+..++.|++|
T Consensus 29 ~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEE
Confidence 556666654432 234443 34568888888888766665532 45678888888887766311 12335667888888
Q ss_pred EEEeeecCCCCcceEEEecCccceeEEE
Q 046658 187 SVHAYFDADDSRTNFIIASSTLKHFTLT 214 (413)
Q Consensus 187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~ 214 (413)
.+.++.. ..+........++|+.|.+.
T Consensus 106 ~L~~N~l-~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 106 ALNTNQL-QSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp ECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred EcCCCcC-cccCHhHhccCCcCCEEECC
Confidence 8887765 22211000123567777776
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.57 E-value=1.7e-05 Score=68.99 Aligned_cols=154 Identities=11% Similarity=0.163 Sum_probs=84.8
Q ss_pred eeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcce
Q 046658 122 RVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTN 200 (413)
Q Consensus 122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~ 200 (413)
...+|..+. ++|+.|+|.++.+...+. .+..+++|++|+|.+..++.- ....+.+++.|+.|.+.++.. ..+...
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l-~~l~~~ 98 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKI-TELPKS 98 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCC-CCCCTT
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcC-CccCHh
Confidence 345565443 678888888887666654 456788888888887766321 123356678888888888876 222210
Q ss_pred EEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcc
Q 046658 201 FIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDN 280 (413)
Q Consensus 201 ~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~ 280 (413)
.....++|+.|.+. ++....-........++|++|++.++.... ....
T Consensus 99 ~f~~l~~L~~L~L~-----~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------------~~~~ 146 (220)
T 2v9t_B 99 LFEGLFSLQLLLLN-----ANKINCLRVDAFQDLHNLNLLSLYDNKLQT---------------------------IAKG 146 (220)
T ss_dssp TTTTCTTCCEEECC-----SSCCCCCCTTTTTTCTTCCEEECCSSCCSC---------------------------CCTT
T ss_pred HccCCCCCCEEECC-----CCCCCEeCHHHcCCCCCCCEEECCCCcCCE---------------------------ECHH
Confidence 00123567777776 554321101111124556666555521110 0011
Q ss_pred cCCCCCCeeEEEEEeCCCC----hhhHHHHHhcCC
Q 046658 281 FCPSFSELTFLEVKLAGSG----WRVLPIILHSSP 311 (413)
Q Consensus 281 ~~p~~~~L~~L~l~~~~~~----~~~l~~ll~~~p 311 (413)
.+..+++|+.|.+..+... ..++...+..-+
T Consensus 147 ~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~ 181 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNP 181 (220)
T ss_dssp TTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCC
T ss_pred HHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCC
Confidence 2345667888888776532 455555555443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.56 E-value=1.4e-05 Score=70.07 Aligned_cols=131 Identities=16% Similarity=0.128 Sum_probs=66.0
Q ss_pred eecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceE
Q 046658 123 VQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNF 201 (413)
Q Consensus 123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~ 201 (413)
..+|..+. ++|++|.|.++.+...++ ....+++|++|+|.+..++.- -...+..++.|+.|.+.++.. ..+....
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~ 107 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQL-TVLPSAV 107 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcC-CccChhH
Confidence 34444332 566677776665555432 345566677777766655211 112345566677777766654 2111100
Q ss_pred EEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccccee---eeecCCCceEEEE
Q 046658 202 IIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSY---VLEEMHCLHEAVV 263 (413)
Q Consensus 202 ~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~---~~~~~~~L~~~~i 263 (413)
....++|+.|.+. ++.... ........++|+.|+++++..... .+..+++|+.+.+
T Consensus 108 ~~~l~~L~~L~Ls-----~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 108 FDRLVHLKELFMC-----CNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TTTCTTCCEEECC-----SSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred hCcchhhCeEecc-----CCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 0123566666666 554321 111112456677777776544322 2455667776555
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.55 E-value=2.7e-05 Score=68.23 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=83.5
Q ss_pred ccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEE
Q 046658 135 LEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLT 214 (413)
Q Consensus 135 L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~ 214 (413)
-..++..+.....+|. .-.++|++|+|.+..+..- ....+..++.|++|.+.++.. ..+........++|+.|.+.
T Consensus 21 ~~~v~c~~~~l~~ip~--~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA--GIPTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCS--CCCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCC--CCCCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECC
Confidence 4566776665555552 2247888888888776321 123456678888888888776 22221001124678888887
Q ss_pred eeecCCCCCCCCcceEEEecCceeEEEEeecccce--eeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEE
Q 046658 215 VVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS--YVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLE 292 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~--~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~ 292 (413)
++....-.....-..++|+.|+++++.... ..+..+++|+.+++... .+ .......+..+++|+.|.
T Consensus 97 -----~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N--~l----~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 97 -----TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN--QL----KSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp -----SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS--CC----CCCCTTTTTTCTTCCEEE
T ss_pred -----CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC--cC----CccCHHHHhCCCCCCEEE
Confidence 665432111111246788888888754432 23456777777665321 00 011112244567788888
Q ss_pred EEeCCC
Q 046658 293 VKLAGS 298 (413)
Q Consensus 293 l~~~~~ 298 (413)
+..+..
T Consensus 166 l~~N~~ 171 (229)
T 3e6j_A 166 LFGNPW 171 (229)
T ss_dssp CTTSCB
T ss_pred eeCCCc
Confidence 776553
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.53 E-value=1.4e-06 Score=74.69 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=31.4
Q ss_pred cccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 128 TIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 128 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
.+..+++|++|+|.+|.....| ....+++|++|+|.++.++ .+...+..+|.|+.|.+.+|..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQI 105 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEEC
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcC
Confidence 3444455555555555444444 4445555555555555553 1223333445555555555544
No 115
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.52 E-value=2.6e-05 Score=78.76 Aligned_cols=130 Identities=17% Similarity=0.185 Sum_probs=81.1
Q ss_pred CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
..+++|+++... ...+|+ .+..+++|++|+|++|.+...++ .+.++++|++|+|.+..++.- -...+.+++.|++
T Consensus 52 ~~~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCC--CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCE
Confidence 467777777544 334554 45667888888888887666654 356788888888888766221 1234577888888
Q ss_pred EEEEeeecCCCCcceEEE-ecCccceeEEEeeecCCCCCCCC-cceEEEecCceeEEEEeeccc
Q 046658 186 LSVHAYFDADDSRTNFII-ASSTLKHFTLTVVIDTDNHFSEI-DHTVMLKAPNLQCLHIIADRL 247 (413)
Q Consensus 186 L~l~~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~-~~~~~~~~P~L~~L~~~~~~~ 247 (413)
|.+.+|.. ..+.. ..+ ..++|+.|.+. ++..... ........++|++|+++++..
T Consensus 129 L~Ls~N~l-~~l~~-~~~~~L~~L~~L~Ls-----~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 129 LVAVETNL-ASLEN-FPIGHLKTLKELNVA-----HNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp EECTTSCC-CCSTT-CCCTTCTTCCEEECC-----SSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcC-CCCCh-hhhhcCcccCeeccc-----cCccccCCCchhhccchhhhhhcccCccc
Confidence 88888866 32322 111 24678888887 6653211 111122357788888777533
No 116
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.46 E-value=2.3e-05 Score=75.83 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=36.9
Q ss_pred CccCCCCChHHHHHHhcCCCcccchhhcccchhhHHHHhc
Q 046658 2 GYRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTS 41 (413)
Q Consensus 2 ~D~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~~ 41 (413)
.|.|+.||+|++.+||+||+.++.++++.|||+|+++...
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 4889999999999999999999999999999999976554
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.46 E-value=0.00016 Score=67.59 Aligned_cols=16 Identities=19% Similarity=0.019 Sum_probs=7.8
Q ss_pred ccCCccceEEEEeeec
Q 046658 178 SACPCLEELSVHAYFD 193 (413)
Q Consensus 178 ~~cp~Le~L~l~~~~~ 193 (413)
..++.|+.|.+.++..
T Consensus 101 ~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGI 116 (350)
T ss_dssp CCCTTCCEEEEEEECC
T ss_pred hhcccccccccccccc
Confidence 3445555555555443
No 118
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.43 E-value=7.8e-05 Score=61.92 Aligned_cols=84 Identities=8% Similarity=-0.021 Sum_probs=63.4
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC--Cccc----CCcccEEEeeeeE-eChhhHHHHhccC
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC--VGTC----FPTMKVLHMQLQN-LDNSLTEKMFSAC 180 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~----~~~L~~L~L~~~~-~~~~~l~~l~~~c 180 (413)
..+++|+++.+.-....+.. +..|++|++|+|.+|...+-.+ .... +++|++|+|++|. +++..+..+ +.|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGC
T ss_pred ceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcC
Confidence 35899999976543444433 4679999999999996433211 1222 4689999999997 599999886 579
Q ss_pred CccceEEEEeeec
Q 046658 181 PCLEELSVHAYFD 193 (413)
Q Consensus 181 p~Le~L~l~~~~~ 193 (413)
|+|++|.+.+|..
T Consensus 139 ~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 139 RNLKYLFLSDLPG 151 (176)
T ss_dssp TTCCEEEEESCTT
T ss_pred CCCCEEECCCCCC
Confidence 9999999999987
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.43 E-value=2.3e-05 Score=68.21 Aligned_cols=129 Identities=15% Similarity=0.190 Sum_probs=75.8
Q ss_pred CCcEEEEEEECcceeeecCc-cccccccccEEEeCCcccccc-CCCcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINA-PCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
.++++|++.... ...+|. .+..+++|++|+|.++.+... |..+.++++|++|+|.+..++. .-..++.+++.|+.
T Consensus 32 ~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCCCE
Confidence 356666665443 223443 445568888888888866655 3356678888888888777631 11234566788888
Q ss_pred EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658 186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~ 245 (413)
|.+.++.. ..+........++|+.|.+. ++....-.....-..++|+.|++.++
T Consensus 109 L~L~~N~l-~~~~~~~~~~l~~L~~L~L~-----~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 109 LLLNANKI-NCLRVDAFQDLHNLNLLSLY-----DNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EECCSSCC-CCCCTTTTTTCTTCCEEECC-----SSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCCC-CEeCHHHcCCCCCCCEEECC-----CCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 88888766 22211001123678888887 66543211111113567777777764
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.40 E-value=0.00019 Score=69.66 Aligned_cols=117 Identities=14% Similarity=0.155 Sum_probs=63.7
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
.+++.|++....- ..+| .+..+++|++|++.++.....|. ..++|++|++.++.+.. +. -+..++.|+.|.
T Consensus 131 ~~L~~L~L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp~---~~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS--CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccCC---CcccccEEECcCCcCCc--Cc-cccCCCCCCEEE
Confidence 3566666654332 2245 35566777777777765544441 23467777777666532 11 146677777777
Q ss_pred EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~ 245 (413)
+.+|.. ..+.. ..++|+.|.+. ++.... ... ....++|++|+++++
T Consensus 202 l~~N~l-~~l~~----~~~~L~~L~l~-----~n~l~~-lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 202 ADNNSL-KKLPD----LPLSLESIVAG-----NNILEE-LPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp CCSSCC-SSCCC----CCTTCCEEECC-----SSCCSS-CCC-CTTCTTCCEEECCSS
T ss_pred CCCCcC-CcCCC----CcCcccEEECc-----CCcCCc-ccc-cCCCCCCCEEECCCC
Confidence 777765 22222 12467777776 554331 111 124566666666664
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.36 E-value=3.4e-05 Score=67.14 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=14.5
Q ss_pred cCceeEEEEeecccc---eeeeecCCCceEEEE
Q 046658 234 APNLQCLHIIADRLG---SYVLEEMHCLHEAVV 263 (413)
Q Consensus 234 ~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i 263 (413)
.++|+.|++.++... ...+..+++|+.+++
T Consensus 128 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 355555555553332 123445556665544
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.36 E-value=7.3e-05 Score=64.98 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=36.5
Q ss_pred ecCccccccccccEEEeCCccccccCC--CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 124 QLLETIYTSTTLEVLKLDSDCVINAPC--VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 124 ~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
.+|..+. +.+++|.|.++.+...++ ....+++|++|+|.+..++.- ....+..++.|++|.+.++..
T Consensus 25 ~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC
T ss_pred cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCcc
Confidence 3454332 345677777765555432 245667777777766655211 012345566666666666654
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.36 E-value=2.4e-05 Score=65.47 Aligned_cols=80 Identities=13% Similarity=-0.002 Sum_probs=41.2
Q ss_pred cccccccEEEeCCccccccCCCccc-CCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658 130 YTSTTLEVLKLDSDCVINAPCVGTC-FPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL 208 (413)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 208 (413)
..+.+|+.|.+.+|.....+ .... +++|++|+|+++.++.- ..+..++.|+.|.+.+|.. ..+...+....++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccCcchhhcCCCC
Confidence 34566666776666555544 2333 33666666666655321 2345566666666666654 11110000123556
Q ss_pred ceeEEE
Q 046658 209 KHFTLT 214 (413)
Q Consensus 209 ~~L~i~ 214 (413)
+.|.+.
T Consensus 91 ~~L~L~ 96 (176)
T 1a9n_A 91 TELILT 96 (176)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 666665
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.35 E-value=3.3e-05 Score=69.22 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=59.4
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
..++.|++....- ..+| .+..+++|++|+|.+|.+.+.+ ....+++|++|+|.+..+++ +..+ .. +.|+.|.
T Consensus 41 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~L~~N~i~~~~-~l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 41 SGVQNFNGDNSNI--QSLA-GMQFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRNRLKN--LNGI-PS-ACLSRLF 112 (263)
T ss_dssp TTCSEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCSC--CTTC-CC-SSCCEEE
T ss_pred CcCcEEECcCCCc--ccch-HHhhCCCCCEEECCCCccCCCh-hhccCCCCCEEECCCCccCC--cCcc-cc-CcccEEE
Confidence 4555555553321 2233 3445566677777666555555 25566666777666665522 1111 11 6666666
Q ss_pred EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~ 245 (413)
+.+|.. .++.. + ...++|+.|.+. ++....- . .....++|+.|+++++
T Consensus 113 L~~N~l-~~~~~-l-~~l~~L~~L~Ls-----~N~i~~~-~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 113 LDNNEL-RDTDS-L-IHLKNLEILSIR-----NNKLKSI-V-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CCSSCC-SBSGG-G-TTCTTCCEEECT-----TSCCCBC-G-GGGGCTTCCEEECTTS
T ss_pred ccCCcc-CCChh-h-cCcccccEEECC-----CCcCCCC-h-HHccCCCCCEEECCCC
Confidence 666655 22221 0 123566666666 5543211 0 1112455666655553
No 125
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.32 E-value=1.3e-06 Score=82.64 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=30.2
Q ss_pred CCCCeeEEEEEeCCCC---hhhHHHHHhcCCCCceEEeccccc
Q 046658 284 SFSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKECW 323 (413)
Q Consensus 284 ~~~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~i~~~~~ 323 (413)
..++|++|+|+.+... ...+...+..+|+|++|.+.....
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 3457888888887765 345777788999999999988543
No 126
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.30 E-value=3.3e-05 Score=68.00 Aligned_cols=168 Identities=11% Similarity=0.100 Sum_probs=104.5
Q ss_pred hCCcEEEEEEECcceeeecCc-cccccccccEEEeCC-ccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCcc
Q 046658 107 MQSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDS-DCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCL 183 (413)
Q Consensus 107 ~~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 183 (413)
..+++.|++..... ...++. .+..+++|++|++.+ +.....+. ...++++|++|+|.+..++. +.. +..++.|
T Consensus 54 l~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L 129 (239)
T 2xwt_C 54 LPNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYST 129 (239)
T ss_dssp CTTCCEEEEECCSS-CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBC
T ss_pred CCCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-ccccccc
Confidence 36789999986641 124454 455789999999998 66655553 46689999999999988733 223 6778888
Q ss_pred c---eEEEEee-ecCCCCcceEEEecCccc-eeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecc-cce---eeeec
Q 046658 184 E---ELSVHAY-FDADDSRTNFIIASSTLK-HFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADR-LGS---YVLEE 254 (413)
Q Consensus 184 e---~L~l~~~-~~~~~~~~~~~i~~~~L~-~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~-~~~---~~~~~ 254 (413)
+ .|.+.++ .. ..+........++|+ .|.+. ++.... .....+..++|+.|++.++. ... ..+..
T Consensus 130 ~~L~~L~l~~N~~l-~~i~~~~~~~l~~L~~~L~l~-----~n~l~~-i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~ 202 (239)
T 2xwt_C 130 DIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLY-----NNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202 (239)
T ss_dssp CSEEEEEEESCTTC-CEECTTTTTTTBSSEEEEECC-----SCCCCE-ECTTTTTTCEEEEEECTTCTTCCEECTTTTTT
T ss_pred ccccEEECCCCcch-hhcCcccccchhcceeEEEcC-----CCCCcc-cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhc
Confidence 8 9999988 43 111100001246788 88887 664321 01111123689999998863 432 23456
Q ss_pred C-CCceEEEEEeecceeEEEecccCcccCC--CCCCeeEEEEEeC
Q 046658 255 M-HCLHEAVVHISYAEWSQAVDQCYDNFCP--SFSELTFLEVKLA 296 (413)
Q Consensus 255 ~-~~L~~~~i~~~~~~l~l~~~~~~~~~~p--~~~~L~~L~l~~~ 296 (413)
+ ++|+.+++.. ..-..+| .|++|++|.+..+
T Consensus 203 l~~~L~~L~l~~-----------N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 203 VYSGPSLLDVSQ-----------TSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp CSBCCSEEECTT-----------CCCCCCCCTTCTTCSEEECTTC
T ss_pred cccCCcEEECCC-----------CccccCChhHhccCceeeccCc
Confidence 6 7888776632 1112233 5788999987654
No 127
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.29 E-value=0.00028 Score=71.14 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=69.1
Q ss_pred eeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcce
Q 046658 122 RVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTN 200 (413)
Q Consensus 122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~ 200 (413)
-..+|..+. +++++|+|+++.+...++ .+.++++|++|+|+++.++.- -...+.+++.|++|.|.+|.. ..+...
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l-~~l~~~ 118 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLALG 118 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECGG
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcC-CCCCHH
Confidence 445666542 479999999998777764 567899999999998876211 022457789999999999865 211110
Q ss_pred EEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEee
Q 046658 201 FIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIA 244 (413)
Q Consensus 201 ~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~ 244 (413)
.....++|+.|.+. ++....-.....-..++|++|++++
T Consensus 119 ~f~~L~~L~~L~Ls-----~N~l~~l~~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 119 AFSGLSSLQKLVAV-----ETNLASLENFPIGHLKTLKELNVAH 157 (635)
T ss_dssp GGTTCTTCCEEECT-----TSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred HhcCCCCCCEEECC-----CCcCCCCChhhhhcCcccCeecccc
Confidence 00123567777777 6543221111112345555555554
No 128
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.25 E-value=0.00012 Score=70.43 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=35.0
Q ss_pred CccCCCCChHHHHHHhcCCCcccchhhcccchhhHHH
Q 046658 2 GYRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHV 38 (413)
Q Consensus 2 ~D~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l 38 (413)
.|.|+.||+|++.+||+||+.+|.++++.|||+|+.+
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 5889999999999999999999999999999999863
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.13 E-value=9.9e-05 Score=61.62 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=48.3
Q ss_pred eecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceE
Q 046658 123 VQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNF 201 (413)
Q Consensus 123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~ 201 (413)
..+|..++ ++|++|.+.++.....+. ....+++|++|+|.+..++.- ....+..++.|+.|.+.++.. ..+....
T Consensus 20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~~~ 95 (177)
T 2o6r_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKL-QSLPNGV 95 (177)
T ss_dssp SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCc-cccCHHH
Confidence 34454333 577777777776555543 245677777777777665311 123345677777777777665 2111100
Q ss_pred EEecCccceeEEE
Q 046658 202 IIASSTLKHFTLT 214 (413)
Q Consensus 202 ~i~~~~L~~L~i~ 214 (413)
....++|+.|.+.
T Consensus 96 ~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 96 FDKLTQLKELALD 108 (177)
T ss_dssp TTTCTTCCEEECC
T ss_pred hhCCcccCEEECc
Confidence 0123556666666
No 130
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.12 E-value=6.8e-05 Score=72.11 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=34.7
Q ss_pred CccCCCCChH----HHHHHhcCCCcccchhhcccchhhHHH
Q 046658 2 GYRISDLPDA----ILGRIVSFLPTKNTVATSVLSRRWKHV 38 (413)
Q Consensus 2 ~D~is~LPd~----lL~~Ils~L~~~d~~r~s~lSrrWr~l 38 (413)
.|.|+.||+| ++.+||+||+.++.++++.|||+|+.+
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4889999999 999999999999999999999999953
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.10 E-value=8.7e-05 Score=63.10 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=41.0
Q ss_pred eecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 123 VQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
..+|..++ ++|++|.|.++.+..+|.....+++|++|+|.+..++.- ....+.+++.|++|.+.++..
T Consensus 23 ~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 23 KVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCcc
Confidence 34554433 467777777776655554556677777777776666221 112345667777777777655
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.09 E-value=7.9e-05 Score=70.05 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=38.5
Q ss_pred ecCccccccccccEEEeCCccccccCCC-cc-cCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 124 QLLETIYTSTTLEVLKLDSDCVINAPCV-GT-CFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 124 ~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~-~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
.+|..+. +.++.|+|+++.+...+.. .. .+++|++|+|.+..++.-. ...+..++.|+.|.|.++..
T Consensus 32 ~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC
T ss_pred ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcC
Confidence 4454433 3467777777766555432 23 6777777777766552111 12345667777777777654
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.08 E-value=0.00012 Score=61.07 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=54.0
Q ss_pred cccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcce-EEEecCccceeE
Q 046658 134 TLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTN-FIIASSTLKHFT 212 (413)
Q Consensus 134 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~-~~i~~~~L~~L~ 212 (413)
+|++|+|++|.+...+ ....+++|++|+|.+..++.- -..++..+|.|+.|.+.+|.. ..+... .....++|+.|.
T Consensus 43 ~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCccc-ccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEE
Confidence 6666666666554443 455566666666666655311 112335566666666666655 222210 001235666666
Q ss_pred EEeeecCCCCCCCCcce---EEEecCceeEEEEeec
Q 046658 213 LTVVIDTDNHFSEIDHT---VMLKAPNLQCLHIIAD 245 (413)
Q Consensus 213 i~~~~~~~~~~~~~~~~---~~~~~P~L~~L~~~~~ 245 (413)
+. ++........ .....|+|+.|++.+.
T Consensus 120 l~-----~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 120 IL-----RNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CC-----SSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ec-----CCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 66 5543321111 1235677777777764
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.04 E-value=0.0001 Score=62.59 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=47.2
Q ss_pred eeecCccccccccccEEEeCCccccccCC--CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 122 RVQLLETIYTSTTLEVLKLDSDCVINAPC--VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
...+|..++. +|++|.|.++.+...+. ....+++|++|+|.+..++.- ....+..++.|++|.+.++..
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcC
Confidence 3455655443 78888888887666653 256788888888888776321 123456678888888888766
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.99 E-value=0.00044 Score=64.87 Aligned_cols=131 Identities=20% Similarity=0.182 Sum_probs=76.7
Q ss_pred CCcEEEEEEECcceeeecCcccc--ccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccc
Q 046658 108 QSVRELQLYLGQQNRVQLLETIY--TSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLE 184 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~--~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 184 (413)
..++.|+++... ...++...+ .+++|++|.|.++.+...++ .+..+++|++|+|.+..++.- ....+..++.|+
T Consensus 39 ~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred CCCCEEECCCCC--CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCC
Confidence 345666666443 234454444 67888888888887766653 466788888888888766321 123456778888
Q ss_pred eEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEE---EecCceeEEEEeeccc
Q 046658 185 ELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVM---LKAPNLQCLHIIADRL 247 (413)
Q Consensus 185 ~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~---~~~P~L~~L~~~~~~~ 247 (413)
.|.|.++.. ..+........++|+.|.+. ++....-..... ...++|+.|+++++..
T Consensus 116 ~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~-----~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 116 VLLLYNNHI-VVVDRNAFEDMAQLQKLYLS-----QNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp EEECCSSCC-CEECTTTTTTCTTCCEEECC-----SSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred EEECCCCcc-cEECHHHhCCcccCCEEECC-----CCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 888888765 11100000123678888887 665432111111 2467777777777433
No 136
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.94 E-value=0.0016 Score=64.86 Aligned_cols=174 Identities=15% Similarity=0.156 Sum_probs=111.3
Q ss_pred hCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
..+++.|++....- ..+|..++ ++|++|+|.+|.+..+| ..+++|++|+|.++.++. +.. +. ..|+.|
T Consensus 58 ~~~L~~L~Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L 125 (571)
T 3cvr_A 58 INQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST--LPE-LP--ASLKHL 125 (571)
T ss_dssp HTTCSEEECCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEE
T ss_pred cCCccEEEeCCCCC--CccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--cch-hh--cCCCEE
Confidence 35788888875542 34777654 78999999998777665 558999999999887743 322 22 289999
Q ss_pred EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceee-eecCCCceEEEEEe
Q 046658 187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYV-LEEMHCLHEAVVHI 265 (413)
Q Consensus 187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~-~~~~~~L~~~~i~~ 265 (413)
.+.+|.. ..+.. ..++|+.|.+. ++.... ... ..++|++|+++++....+. +. ++|+.+++..
T Consensus 126 ~Ls~N~l-~~lp~----~l~~L~~L~Ls-----~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 126 DVDNNQL-TMLPE----LPALLEYINAD-----NNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVST 189 (571)
T ss_dssp ECCSSCC-SCCCC----CCTTCCEEECC-----SSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCS
T ss_pred ECCCCcC-CCCCC----cCccccEEeCC-----CCccCc-CCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcC
Confidence 9999877 33332 46789999998 776542 222 4678999999986543211 22 6777665532
Q ss_pred ecceeEEEecccCcccCCCC-CCe-------eEEEEEeCCCChhhHHHHHhcCCCCceEEeccc
Q 046658 266 SYAEWSQAVDQCYDNFCPSF-SEL-------TFLEVKLAGSGWRVLPIILHSSPNLERLLVDKE 321 (413)
Q Consensus 266 ~~~~l~l~~~~~~~~~~p~~-~~L-------~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 321 (413)
.....+|.+ .+| +.|.++.+... .++.-+..+|+|+.|.+...
T Consensus 190 -----------N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 190 -----------NLLESLPAVPVRNHHSEETEIFFRCRENRIT--HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp -----------SCCSSCCCCC--------CCEEEECCSSCCC--CCCGGGGGSCTTEEEECCSS
T ss_pred -----------CCCCchhhHHHhhhcccccceEEecCCCcce--ecCHHHhcCCCCCEEEeeCC
Confidence 111122222 156 77777765433 33443445888888888763
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.88 E-value=0.00024 Score=70.95 Aligned_cols=79 Identities=20% Similarity=0.172 Sum_probs=45.4
Q ss_pred CcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEE
Q 046658 109 SVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSV 188 (413)
Q Consensus 109 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 188 (413)
.++.|+++... ...+|. +..+++|+.|+|++|.+..+|....++++|++|+|++..++. +. -+..++.|+.|.+
T Consensus 442 ~L~~L~Ls~n~--l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKD--LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSC--CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCC--CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence 34555554332 223454 555666777777666555555455566667777776666532 22 3556666777766
Q ss_pred Eeeec
Q 046658 189 HAYFD 193 (413)
Q Consensus 189 ~~~~~ 193 (413)
.+|..
T Consensus 516 s~N~l 520 (567)
T 1dce_A 516 CNNRL 520 (567)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 66655
No 138
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.76 E-value=0.0071 Score=56.24 Aligned_cols=33 Identities=6% Similarity=-0.037 Sum_probs=15.7
Q ss_pred cccEEEeCCccccccCC-CcccCCcccEEEeeee
Q 046658 134 TLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQ 166 (413)
Q Consensus 134 ~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~ 166 (413)
++++|+|.++.+..+|. .+.++++|++|+|++.
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 64 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 64 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC
Confidence 45555555544444432 2344555555555544
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.70 E-value=0.00017 Score=74.22 Aligned_cols=110 Identities=15% Similarity=0.046 Sum_probs=56.7
Q ss_pred CccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEec
Q 046658 126 LETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIAS 205 (413)
Q Consensus 126 p~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~ 205 (413)
|..+..++.|+.|+|.++.+..+|.....+++|++|+|.++.++ .+..-+..++.|+.|+|.+|.. ..+.. .....
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l-~~lp~-~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRL-TSLPA-ELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCC-SSCCS-SGGGG
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcC-CccCh-hhcCC
Confidence 33445556677777766665555544556666777777666553 2233345566677777766665 22221 11123
Q ss_pred CccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658 206 STLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 206 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~ 245 (413)
++|+.|.+. ++.... ........++|+.|+++++
T Consensus 293 ~~L~~L~L~-----~N~l~~-lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 293 FQLKYFYFF-----DNMVTT-LPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp TTCSEEECC-----SSCCCC-CCSSTTSCTTCCCEECTTS
T ss_pred CCCCEEECC-----CCCCCc-cChhhhcCCCccEEeCCCC
Confidence 566666666 554321 1111223566677766664
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.67 E-value=0.00021 Score=73.66 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=78.7
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS 187 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 187 (413)
..++.|+++... ...+|..++.+++|++|.|.+|.+..+|.....+++|++|+|+++.++ .+..-+..++.|+.|.
T Consensus 224 ~~L~~L~Ls~n~--l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQ--IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSC--CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCC--CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEE
Confidence 456777776544 347888888999999999999977777756778999999999998875 3344467789999999
Q ss_pred EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCC
Q 046658 188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFS 224 (413)
Q Consensus 188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~ 224 (413)
|.+|.. ..+.. ..-..++|+.|.+. ++...
T Consensus 300 L~~N~l-~~lp~-~~~~l~~L~~L~L~-----~N~l~ 329 (727)
T 4b8c_D 300 FFDNMV-TTLPW-EFGNLCNLQFLGVE-----GNPLE 329 (727)
T ss_dssp CCSSCC-CCCCS-STTSCTTCCCEECT-----TSCCC
T ss_pred CCCCCC-CccCh-hhhcCCCccEEeCC-----CCccC
Confidence 999876 33332 11234789999998 76643
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.61 E-value=0.00059 Score=68.11 Aligned_cols=84 Identities=20% Similarity=0.216 Sum_probs=68.8
Q ss_pred hCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
-.+++.|+++...- ..+|..+..+++|+.|+|++|.+..+| ....+++|++|+|++..++.-.....+..++.|+.|
T Consensus 462 l~~L~~L~Ls~N~l--~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCC--CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCcccc--cccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 36889999886653 378988899999999999999887777 788899999999999988433213446789999999
Q ss_pred EEEeeec
Q 046658 187 SVHAYFD 193 (413)
Q Consensus 187 ~l~~~~~ 193 (413)
.+.++..
T Consensus 539 ~L~~N~l 545 (567)
T 1dce_A 539 NLQGNSL 545 (567)
T ss_dssp ECTTSGG
T ss_pred EecCCcC
Confidence 9999876
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.61 E-value=0.00067 Score=57.49 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=62.0
Q ss_pred CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
.++++|.+....- ..+|..+..+++|++|+|+++.+...++ .+.++++|++|+|.+..++.-. ...+..++.|+.|
T Consensus 31 ~~l~~L~L~~n~i--~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCC--CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcC--chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEE
Confidence 4677777775543 3567777788999999999998777664 4678999999999988773211 2235678999999
Q ss_pred EEEeeec
Q 046658 187 SVHAYFD 193 (413)
Q Consensus 187 ~l~~~~~ 193 (413)
.+.++..
T Consensus 108 ~L~~N~l 114 (193)
T 2wfh_A 108 SLHGNDI 114 (193)
T ss_dssp ECCSSCC
T ss_pred ECCCCCC
Confidence 9998876
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.46 E-value=0.00094 Score=55.51 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=65.7
Q ss_pred CCcEEEEEEECcceeeecCcc-ccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQLLET-IYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
.++++|++.... ...+|.. +..+++|++|+|.++.+...++. ...+++|++|+|.+..++.- ....+..++.|+.
T Consensus 28 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEeCCCc--ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCE
Confidence 466777766543 2345544 34678999999998877666643 46789999999998877321 1234567889999
Q ss_pred EEEEeeecCCCCcceEEEecCccceeEEE
Q 046658 186 LSVHAYFDADDSRTNFIIASSTLKHFTLT 214 (413)
Q Consensus 186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~ 214 (413)
|.+.++.. ..+........++|+.|.+.
T Consensus 105 L~l~~N~l-~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 105 LALDTNQL-KSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp EECCSSCC-SCCCTTTTTTCTTCCEEECC
T ss_pred EECcCCcc-eEeCHHHhcCCcccCEEEec
Confidence 99988876 22221000123566666666
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.41 E-value=0.00095 Score=56.68 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=75.0
Q ss_pred hCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658 107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL 186 (413)
Q Consensus 107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 186 (413)
-.+++.|+++...- ..+| .+..+++|++|+|.+|.+..+|.....+++|++|+|.++.++. +. -+..++.|+.|
T Consensus 47 l~~L~~L~ls~n~l--~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 47 LKACKHLALSTNNI--EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVL 120 (198)
T ss_dssp TTTCSEEECSEEEE--SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEE
T ss_pred CCCCCEEECCCCCC--cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEE
Confidence 46788888875542 3356 6677899999999998777777445567899999999998843 22 35678999999
Q ss_pred EEEeeecCCCCcce-EEEecCccceeEEEeeecCCCCC
Q 046658 187 SVHAYFDADDSRTN-FIIASSTLKHFTLTVVIDTDNHF 223 (413)
Q Consensus 187 ~l~~~~~~~~~~~~-~~i~~~~L~~L~i~~~~~~~~~~ 223 (413)
.+.++.. ..+... .....++|+.|.+. ++..
T Consensus 121 ~l~~N~i-~~~~~~~~l~~l~~L~~L~l~-----~N~l 152 (198)
T 1ds9_A 121 YMSNNKI-TNWGEIDKLAALDKLEDLLLA-----GNPL 152 (198)
T ss_dssp EESEEEC-CCHHHHHHHTTTTTCSEEEEC-----SCHH
T ss_pred ECCCCcC-CchhHHHHHhcCCCCCEEEec-----CCcc
Confidence 9999887 322210 01135789999998 7754
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.39 E-value=0.0014 Score=54.21 Aligned_cols=69 Identities=19% Similarity=0.116 Sum_probs=44.9
Q ss_pred eeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 122 RVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
...+|..+. ++|++|+|.++.+...++ .+.++++|++|+|.+..++.- ....+..++.|+.|.+.++..
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCcc
Confidence 344565443 678888888877666643 456778888888887766311 123346677888888877765
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.26 E-value=0.00065 Score=57.50 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=60.4
Q ss_pred cEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEe
Q 046658 136 EVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTV 215 (413)
Q Consensus 136 ~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~ 215 (413)
+++++.++....+|. .-+++|++|+|.+..++.-.-..++..++.|+.|.+.++.. ..+........++|+.|.+.
T Consensus 11 ~~l~~s~~~l~~ip~--~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls- 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR--DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLG- 86 (192)
T ss_dssp TEEECTTSCCSSCCS--CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECC-
T ss_pred CEEEcCCCCcCcCcc--CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC-CCcCHhHcCCcccCCEEECC-
Confidence 788888887766663 22458999999998874322223467889999999999876 22211000123678888887
Q ss_pred eecCCCCCCCCcceEEEecCceeEEEEee
Q 046658 216 VIDTDNHFSEIDHTVMLKAPNLQCLHIIA 244 (413)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~P~L~~L~~~~ 244 (413)
++.............++|++|++++
T Consensus 87 ----~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 87 ----ENKIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp ----SCCCCEECSSSSTTCTTCCEEECCS
T ss_pred ----CCcCCccCHHHhcCCCCCCEEECCC
Confidence 6554311000011245566665555
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.20 E-value=0.0021 Score=53.43 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=44.4
Q ss_pred eecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658 123 VQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
..+|..+. ++|++|.|.++.+...++ ...++++|++|+|.+..++.- -..++..++.|+.|.+.++..
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCcc
Confidence 45565543 678888888877666643 456778888888887766321 122345677888888877765
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.12 E-value=0.0028 Score=53.23 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=16.4
Q ss_pred CCcccEEEeeeeEeChhhH---HHHhccCCccceEEE
Q 046658 155 FPTMKVLHMQLQNLDNSLT---EKMFSACPCLEELSV 188 (413)
Q Consensus 155 ~~~L~~L~L~~~~~~~~~l---~~l~~~cp~Le~L~l 188 (413)
.++|++|+|.++.+++... ...+..++.|++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 3455555555555544332 222344455555555
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.06 E-value=0.0021 Score=59.27 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=47.8
Q ss_pred cCceeEEEEeeccc---ceeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCee-EEEEEeCCCChhhHHHHHhc
Q 046658 234 APNLQCLHIIADRL---GSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELT-FLEVKLAGSGWRVLPIILHS 309 (413)
Q Consensus 234 ~P~L~~L~~~~~~~---~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~-~L~l~~~~~~~~~l~~ll~~ 309 (413)
+++|+++++.++.. +...+.++.+|+++.+.-. +.......+..+.+|+ .|.+...-... -...+..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-------i~~I~~~aF~~~~~L~~~l~l~~~l~~I--~~~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-------LKTIGQRVFSNCGRLAGTLELPASVTAI--EFGAFMG 295 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-------CCEECTTTTTTCTTCCEEEEECTTCCEE--CTTTTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-------cceehHHHhhCChhccEEEEEcccceEE--chhhhhC
Confidence 68899998887433 2445677888888766210 0011123355677788 88886521111 1235679
Q ss_pred CCCCceEEecc
Q 046658 310 SPNLERLLVDK 320 (413)
Q Consensus 310 ~p~L~~L~i~~ 320 (413)
|++|++|.+..
T Consensus 296 c~~L~~l~l~~ 306 (329)
T 3sb4_A 296 CDNLRYVLATG 306 (329)
T ss_dssp CTTEEEEEECS
T ss_pred CccCCEEEeCC
Confidence 99999999865
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.90 E-value=0.0046 Score=51.29 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=60.0
Q ss_pred CCcEEEEEEECcceeeec-CccccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQL-LETIYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
.+++.|+++... ...+ |..+...++|++|+|.++.+...|.. +..+++|++|+|.+..+..- ....+..++.|+.
T Consensus 33 ~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQ--ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCC--ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCE
Confidence 567777776544 2334 44556779999999999988777753 46899999999998877321 1234667899999
Q ss_pred EEEEeeec
Q 046658 186 LSVHAYFD 193 (413)
Q Consensus 186 L~l~~~~~ 193 (413)
|.+.++..
T Consensus 110 L~L~~N~~ 117 (174)
T 2r9u_A 110 IYLYNNPW 117 (174)
T ss_dssp EECCSSCB
T ss_pred EEeCCCCc
Confidence 99988876
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.81 E-value=0.00012 Score=69.08 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=77.6
Q ss_pred CcceEEeeecCCCCcccHHHHHHHHHh---CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-Cc----
Q 046658 81 NIDSFCLHCSRPIDLSSVNFWLSSALM---QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VG---- 152 (413)
Q Consensus 81 ~l~~l~l~~~~~~~~~~~~~wl~~a~~---~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~---- 152 (413)
.++.+.+.... ....... .+..+.. ..+++|+++.+.-....+......+++|++|+|++|.+.+... ..
T Consensus 73 ~L~~L~Ls~n~-l~~~~~~-~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 73 SLRQLNLAGVR-MTPVKCT-VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TCCEEECTTSC-CCHHHHH-HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hCCEEEecCCC-CCHHHHH-HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 36777766533 2222122 2222222 4677777764432222222222223567788887775433211 00
Q ss_pred -ccCCcccEEEeeeeEeChhh---HHHHhccCCccceEEEEeeec-CCCCcce--EEEecCccceeEEEeeecCCCCCCC
Q 046658 153 -TCFPTMKVLHMQLQNLDNSL---TEKMFSACPCLEELSVHAYFD-ADDSRTN--FIIASSTLKHFTLTVVIDTDNHFSE 225 (413)
Q Consensus 153 -~~~~~L~~L~L~~~~~~~~~---l~~l~~~cp~Le~L~l~~~~~-~~~~~~~--~~i~~~~L~~L~i~~~~~~~~~~~~ 225 (413)
...++|++|+|.++.+++.. +...+..++.|++|+|.+|.. ..++... .-...++|+.|.+. +|....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls-----~N~i~~ 225 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA-----YNGAGD 225 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC-----SSCCCH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC-----CCCCCH
Confidence 23567888888877774433 344456677788888777765 1111110 00123567777777 665431
Q ss_pred Ccc----eEEEecCceeEEEEeec
Q 046658 226 IDH----TVMLKAPNLQCLHIIAD 245 (413)
Q Consensus 226 ~~~----~~~~~~P~L~~L~~~~~ 245 (413)
... ......|+|++|+++++
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHHHHHhCCCCCEEeccCC
Confidence 100 00012366777766664
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.60 E-value=0.0071 Score=49.86 Aligned_cols=83 Identities=18% Similarity=0.130 Sum_probs=58.2
Q ss_pred CCcEEEEEEECcceeeec-CccccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658 108 QSVRELQLYLGQQNRVQL-LETIYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE 185 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 185 (413)
..++.|+++... ...+ |..+...++|++|+|.++.+...++. +..+++|++|+|.+..+..- ....+..++.|+.
T Consensus 30 ~~l~~L~L~~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCc--CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence 456666666443 2334 34455678999999999887777653 46889999999998877321 1234567889999
Q ss_pred EEEEeeec
Q 046658 186 LSVHAYFD 193 (413)
Q Consensus 186 L~l~~~~~ 193 (413)
|.+.++..
T Consensus 107 L~L~~N~~ 114 (170)
T 3g39_A 107 IWLLNNPW 114 (170)
T ss_dssp EECCSSCB
T ss_pred EEeCCCCC
Confidence 99988876
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.56 E-value=0.0043 Score=57.52 Aligned_cols=88 Identities=13% Similarity=0.095 Sum_probs=50.4
Q ss_pred eecCccccccccccEEEeCC-ccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcce
Q 046658 123 VQLLETIYTSTTLEVLKLDS-DCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTN 200 (413)
Q Consensus 123 ~~lp~~~~~~~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~ 200 (413)
..+|. +...++|+.|+|.+ +.+...++ .+.++++|++|+|++..+..- ....+..++.|+.|+|.++.. ..+..
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~- 97 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNAL-ESLSW- 97 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCC-SCCCS-
T ss_pred CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcc-ceeCH-
Confidence 34666 66667777777775 65555542 355677777777777765221 122345677777777777765 22211
Q ss_pred EEEecCccceeEEE
Q 046658 201 FIIASSTLKHFTLT 214 (413)
Q Consensus 201 ~~i~~~~L~~L~i~ 214 (413)
-......|+.|.+.
T Consensus 98 ~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 98 KTVQGLSLQELVLS 111 (347)
T ss_dssp TTTCSCCCCEEECC
T ss_pred HHcccCCceEEEee
Confidence 00111236677766
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.58 E-value=0.016 Score=48.53 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=27.5
Q ss_pred ccccccEEEeCCccccccC-----CCcccCCcccEEEe--eeeEeChhh---HHHHhccCCccceEEEEeee
Q 046658 131 TSTTLEVLKLDSDCVINAP-----CVGTCFPTMKVLHM--QLQNLDNSL---TEKMFSACPCLEELSVHAYF 192 (413)
Q Consensus 131 ~~~~L~~L~L~~~~~~~~~-----~~~~~~~~L~~L~L--~~~~~~~~~---l~~l~~~cp~Le~L~l~~~~ 192 (413)
..++|++|+|.+|.+.+.. ......++|++|+| .+..+++.. +...+..++.|++|.+.+|.
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3445555555554332210 02223445555555 444443332 33334445555555555443
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.12 E-value=0.017 Score=54.75 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=16.7
Q ss_pred CCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEec
Q 046658 282 CPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVD 319 (413)
Q Consensus 282 ~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~ 319 (413)
+..+.+|+.+.+...-... -...+..|++|+++.|.
T Consensus 296 F~~c~~L~~l~l~~~i~~I--~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 296 LEGCPKLARFEIPESIRIL--GQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp TTTCTTCCEECCCTTCCEE--CTTTTTTCCSCCEEEEC
T ss_pred hhCCccCCeEEeCCceEEE--hhhhhcCCCCccEEEEC
Confidence 3345556655554211100 11234566667666663
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.01 E-value=0.032 Score=49.60 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=16.0
Q ss_pred cccccccEEEeCCccccccCCCcccCC--cccEEEeeeeEe
Q 046658 130 YTSTTLEVLKLDSDCVINAPCVGTCFP--TMKVLHMQLQNL 168 (413)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~L~~~~~ 168 (413)
..+++|+.|+|+++.+.+.. ....+. +|++|+|.+..+
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcC
Confidence 34455555555554433321 122222 455555554444
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=92.95 E-value=0.052 Score=50.07 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=51.5
Q ss_pred CCcEEEEEEE-CcceeeecC-ccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccc
Q 046658 108 QSVRELQLYL-GQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLE 184 (413)
Q Consensus 108 ~~v~~L~l~~-~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 184 (413)
.++++|+++. .. ...+| ..+..+++|+.|+|+++.+...++ .+.++++|++|+|.+..++.- -..++...+ |+
T Consensus 31 ~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~ 106 (347)
T 2ifg_A 31 ENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQ 106 (347)
T ss_dssp SCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CC
T ss_pred CCeeEEEccCCCC--CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ce
Confidence 3567777763 33 23344 345567888888888887666654 356788888888888776311 112233333 88
Q ss_pred eEEEEeeec
Q 046658 185 ELSVHAYFD 193 (413)
Q Consensus 185 ~L~l~~~~~ 193 (413)
.|.|.++..
T Consensus 107 ~l~l~~N~~ 115 (347)
T 2ifg_A 107 ELVLSGNPL 115 (347)
T ss_dssp EEECCSSCC
T ss_pred EEEeeCCCc
Confidence 888877765
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=91.26 E-value=0.2 Score=45.82 Aligned_cols=33 Identities=9% Similarity=0.025 Sum_probs=16.1
Q ss_pred cccccEEEeCCccccccCC-CcccCCcccEEEee
Q 046658 132 STTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQ 164 (413)
Q Consensus 132 ~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~ 164 (413)
|++|++++|.++.....+. .+.+|++|++|+|.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 4555555555543333332 34445555555554
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=89.31 E-value=0.29 Score=46.28 Aligned_cols=185 Identities=12% Similarity=0.161 Sum_probs=101.2
Q ss_pred CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCCCcccCCcccEEEeeee-E-eChhhHHHHhccCCccc
Q 046658 108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQ-N-LDNSLTEKMFSACPCLE 184 (413)
Q Consensus 108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~-~-~~~~~l~~l~~~cp~Le 184 (413)
.+++++.+.. ....++. .+..|++|+.+.|..+.....+..+..+.+|+.+.|... . ++. ..+.+|+.|+
T Consensus 157 ~~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~ 229 (401)
T 4fdw_A 157 STVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLK 229 (401)
T ss_dssp CCCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCC
T ss_pred CCceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCC
Confidence 3566666542 1233443 345689999999987666556544445788998888632 1 133 3457799999
Q ss_pred eEEEEeeec--CCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccc--------ceeeeec
Q 046658 185 ELSVHAYFD--ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRL--------GSYVLEE 254 (413)
Q Consensus 185 ~L~l~~~~~--~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~--------~~~~~~~ 254 (413)
.+.+...-. +... ....+|+.+.+. +.-..-+ ......+++|+.+.+.+... +...+.+
T Consensus 230 ~l~l~~~l~~I~~~a-----F~~~~L~~i~lp-----~~i~~I~-~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~ 298 (401)
T 4fdw_A 230 TIEIPENVSTIGQEA-----FRESGITTVKLP-----NGVTNIA-SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG 298 (401)
T ss_dssp CEECCTTCCEECTTT-----TTTCCCSEEEEE-----TTCCEEC-TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT
T ss_pred EEecCCCccCccccc-----cccCCccEEEeC-----CCccEEC-hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC
Confidence 998865321 1100 112467777775 3221100 01112467888888766321 2334566
Q ss_pred CCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658 255 MHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK 320 (413)
Q Consensus 255 ~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~ 320 (413)
+++|+.+.+.-. +.......+..+.+|+.+.|....... -...+..| +|+++.+..
T Consensus 299 c~~L~~l~l~~~-------i~~I~~~aF~~c~~L~~l~lp~~l~~I--~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 299 CPKLARFEIPES-------IRILGQGLLGGNRKVTQLTIPANVTQI--NFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp CTTCCEECCCTT-------CCEECTTTTTTCCSCCEEEECTTCCEE--CTTSSSSS-CCCEEEECC
T ss_pred CccCCeEEeCCc-------eEEEhhhhhcCCCCccEEEECccccEE--cHHhCCCC-CCCEEEEcC
Confidence 777777655210 000011234466778888874321111 11235677 888888876
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=88.93 E-value=0.16 Score=45.02 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=19.1
Q ss_pred cCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec
Q 046658 154 CFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD 193 (413)
Q Consensus 154 ~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~ 193 (413)
.+|+|++|+|++..+ +-..+..++..+|.|+.|.|.++..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i 208 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc
Confidence 345555555555544 2233334444555555555555444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=74.15 E-value=1.5 Score=36.67 Aligned_cols=59 Identities=14% Similarity=0.274 Sum_probs=30.3
Q ss_pred ccccEEEeCCccccccCC-----CcccCCcccEEEeeeeEeChhhHHHHh---ccCCccceEEEEee
Q 046658 133 TTLEVLKLDSDCVINAPC-----VGTCFPTMKVLHMQLQNLDNSLTEKMF---SACPCLEELSVHAY 191 (413)
Q Consensus 133 ~~L~~L~L~~~~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~---~~cp~Le~L~l~~~ 191 (413)
.+|+.|+|.+|.+-+... ....-+.|++|+|.+..+++.....+. ..-..|++|.|.++
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 456666666654432210 112345566666666666554444333 33445666666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=70.59 E-value=0.83 Score=38.29 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=26.6
Q ss_pred ccccccEEEeCCccccccCC-----CcccCCcccEEEeeee---EeChh---hHHHHhccCCccceEEEEe
Q 046658 131 TSTTLEVLKLDSDCVINAPC-----VGTCFPTMKVLHMQLQ---NLDNS---LTEKMFSACPCLEELSVHA 190 (413)
Q Consensus 131 ~~~~L~~L~L~~~~~~~~~~-----~~~~~~~L~~L~L~~~---~~~~~---~l~~l~~~cp~Le~L~l~~ 190 (413)
.-++|++|+|.++.+-+... ....-+.|++|+|.+. .+++. .+..++...+.|++|.+..
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 33556666665554322110 1122334666666432 22222 3444445555555555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=64.20 E-value=6.4 Score=30.21 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=33.1
Q ss_pred ecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEe
Q 046658 124 QLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNL 168 (413)
Q Consensus 124 ~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~ 168 (413)
.+|..+. ++|+.|+|+++.+..++. .+..+++|++|+|.+..+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5564422 469999999998877765 456789999999998877
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=57.88 E-value=7.6 Score=36.06 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=8.2
Q ss_pred eeeeecCCCceEEEE
Q 046658 249 SYVLEEMHCLHEAVV 263 (413)
Q Consensus 249 ~~~~~~~~~L~~~~i 263 (413)
...+.++.+|+.+.+
T Consensus 350 ~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 350 ESAFSNCTALNNIEY 364 (394)
T ss_dssp GGGGTTCTTCCEEEE
T ss_pred HhHhhCCCCCCEEEE
Confidence 344555666665544
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=43.30 E-value=24 Score=32.51 Aligned_cols=79 Identities=13% Similarity=0.230 Sum_probs=48.2
Q ss_pred ccccccccEEEeCCccccccCC-CcccCCcccEEEeee-eE-eChhhHHHHhccCCccceEEEEeeecCCCCcceEEEec
Q 046658 129 IYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQL-QN-LDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIAS 205 (413)
Q Consensus 129 ~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~-~~-~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~ 205 (413)
...|+.|+.+.+.... ...+. .+.+|.+|+.+.|.. +. +++. .+.+|..|+++.+-..-. .+....-..|
T Consensus 284 F~~c~~L~~i~l~~~i-~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~~i~ip~sv~--~I~~~aF~~C 356 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRI-TELPESVFAGCISLKSIDIPEGITQILDD----AFAGCEQLERIAIPSSVT--KIPESAFSNC 356 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEEECTTCC--BCCGGGGTTC
T ss_pred cccccccccccCCCcc-cccCceeecCCCCcCEEEeCCcccEehHh----HhhCCCCCCEEEECcccC--EEhHhHhhCC
Confidence 3568899999986532 22322 466788999998853 32 2333 457899999998843211 0111011245
Q ss_pred CccceeEEE
Q 046658 206 STLKHFTLT 214 (413)
Q Consensus 206 ~~L~~L~i~ 214 (413)
.+|+.+.+.
T Consensus 357 ~~L~~i~~~ 365 (394)
T 4gt6_A 357 TALNNIEYS 365 (394)
T ss_dssp TTCCEEEES
T ss_pred CCCCEEEEC
Confidence 788888887
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=36.36 E-value=19 Score=33.00 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=36.4
Q ss_pred cccccccEEEeCCccccccC-CCcccCCcccEEEeeee--E-eChhhHHHHhccCCccceEEEE
Q 046658 130 YTSTTLEVLKLDSDCVINAP-CVGTCFPTMKVLHMQLQ--N-LDNSLTEKMFSACPCLEELSVH 189 (413)
Q Consensus 130 ~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~--~-~~~~~l~~l~~~cp~Le~L~l~ 189 (413)
..|.+|+.+.+..... ..+ ..+.+|++|+.+.+... . +++. .+.+|..|+++.|-
T Consensus 260 ~~~~~l~~i~l~~~i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp 318 (379)
T 4h09_A 260 QNCTALKTLNFYAKVK-TVPYLLCSGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLP 318 (379)
T ss_dssp TTCTTCCEEEECCCCS-EECTTTTTTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECC
T ss_pred ceeehhccccccccce-eccccccccccccccccccccccceehhh----hhcCCCCCCEEEcC
Confidence 4578888888865422 222 14667889999988643 2 2333 45779999998874
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=33.82 E-value=26 Score=32.31 Aligned_cols=80 Identities=15% Similarity=0.207 Sum_probs=48.8
Q ss_pred cccccccccEEEeCCccccccCC-CcccCCcccEEEeee-eE-eChhhHHHHhccCCccceEEEEeeecCCCCcceEEEe
Q 046658 128 TIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQL-QN-LDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIA 204 (413)
Q Consensus 128 ~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~-~~-~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~ 204 (413)
..+.|.+|+.+.+.... ...+. .+.+|.+|+.++|.. +. +++. .+.+|..|+++.+-..-. .+....-..
T Consensus 292 ~F~~~~~L~~i~l~~~i-~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~c~~L~~i~lp~~l~--~I~~~aF~~ 364 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDSV-KFIGEEAFESCTSLVSIDLPYLVEEIGKR----SFRGCTSLSNINFPLSLR--KIGANAFQG 364 (394)
T ss_dssp TTTTCTTCCEEEECTTC-CEECTTTTTTCTTCCEECCCTTCCEECTT----TTTTCTTCCEECCCTTCC--EECTTTBTT
T ss_pred ccccccccccccccccc-ceechhhhcCCCCCCEEEeCCcccEEhHH----hccCCCCCCEEEECcccc--EehHHHhhC
Confidence 34568999999997642 22221 466789999999853 22 2333 357899999998754311 000001123
Q ss_pred cCccceeEEE
Q 046658 205 SSTLKHFTLT 214 (413)
Q Consensus 205 ~~~L~~L~i~ 214 (413)
+++|+.+.+.
T Consensus 365 C~~L~~i~lp 374 (394)
T 4fs7_A 365 CINLKKVELP 374 (394)
T ss_dssp CTTCCEEEEE
T ss_pred CCCCCEEEEC
Confidence 5789999887
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=30.01 E-value=45 Score=30.60 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=39.8
Q ss_pred ccccccccEEEeCCccccccCC-CcccCCcccEEEeeee-E-eChhhHHHHhccCCccceEEEEee
Q 046658 129 IYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQ-N-LDNSLTEKMFSACPCLEELSVHAY 191 (413)
Q Consensus 129 ~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~-~-~~~~~l~~l~~~cp~Le~L~l~~~ 191 (413)
+..|.+|+++.|... ....+. .+.+|.+|+.+.|... . +++. .+.+|++|+++.+...
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIGAN----AFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTT----TBTTCTTCCEEEEEGG
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccccEehHH----HhhCCCCCCEEEECCC
Confidence 346899999999654 222222 5667899999998632 2 2333 4688999999998654
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=20.67 E-value=85 Score=28.39 Aligned_cols=81 Identities=12% Similarity=0.176 Sum_probs=49.1
Q ss_pred cccccccccEEEeCCccccccC-CCcccCCcccEEEeeeeEe--ChhhHHHHhccCCccceEEEEeeecCCCCcceEEEe
Q 046658 128 TIYTSTTLEVLKLDSDCVINAP-CVGTCFPTMKVLHMQLQNL--DNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIA 204 (413)
Q Consensus 128 ~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~ 204 (413)
..+.|..|+.+.+.... ...+ ....++.+|+.+.+..-.. + ...+.+|+.|+++.+.+... ..+....-..
T Consensus 235 ~f~~~~~L~~i~lp~~v-~~I~~~aF~~~~~l~~i~l~~~i~~i~----~~aF~~c~~L~~i~l~~~~i-~~I~~~aF~~ 308 (379)
T 4h09_A 235 AFYGMKALDEIAIPKNV-TSIGSFLLQNCTALKTLNFYAKVKTVP----YLLCSGCSNLTKVVMDNSAI-ETLEPRVFMD 308 (379)
T ss_dssp TTTTCSSCCEEEECTTC-CEECTTTTTTCTTCCEEEECCCCSEEC----TTTTTTCTTCCEEEECCTTC-CEECTTTTTT
T ss_pred cccCCccceEEEcCCCc-cEeCccccceeehhccccccccceecc----cccccccccccccccccccc-ceehhhhhcC
Confidence 34678999999997652 2222 1456788999998853211 2 23467899999999976432 0010000113
Q ss_pred cCccceeEEE
Q 046658 205 SSTLKHFTLT 214 (413)
Q Consensus 205 ~~~L~~L~i~ 214 (413)
+.+|+.+.+-
T Consensus 309 c~~L~~i~lp 318 (379)
T 4h09_A 309 CVKLSSVTLP 318 (379)
T ss_dssp CTTCCEEECC
T ss_pred CCCCCEEEcC
Confidence 5678888775
Done!