Query 046660
Match_columns 474
No_of_seqs 238 out of 2121
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 4.2E-41 9.1E-46 345.4 40.7 190 6-201 53-253 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 2.3E-34 5E-39 293.8 34.5 197 9-218 6-205 (438)
3 PLN02805 D-lactate dehydrogena 100.0 1E-34 2.3E-39 302.8 31.7 190 16-210 132-328 (555)
4 TIGR01679 bact_FAD_ox FAD-link 100.0 9.6E-34 2.1E-38 289.2 30.5 195 9-218 3-199 (419)
5 TIGR01677 pln_FAD_oxido plant- 100.0 7.2E-33 1.6E-37 288.3 33.9 182 8-192 22-214 (557)
6 TIGR01676 GLDHase galactonolac 100.0 3.6E-33 7.7E-38 286.5 22.9 197 8-217 52-251 (541)
7 COG0277 GlcD FAD/FMN-containin 100.0 1.3E-31 2.7E-36 279.4 28.1 185 14-202 28-219 (459)
8 PRK11230 glycolate oxidase sub 100.0 8.2E-32 1.8E-36 279.7 23.9 194 14-210 52-251 (499)
9 KOG1231 Proteins containing th 100.0 1.1E-30 2.5E-35 252.8 18.4 178 10-191 56-240 (505)
10 PRK11282 glcE glycolate oxidas 100.0 2.7E-30 5.9E-35 254.9 20.0 169 26-200 3-180 (352)
11 TIGR00387 glcD glycolate oxida 100.0 4.7E-30 1E-34 262.4 20.2 187 21-210 1-194 (413)
12 PLN02465 L-galactono-1,4-lacto 100.0 4.7E-29 1E-33 258.2 23.6 198 8-218 87-287 (573)
13 PF01565 FAD_binding_4: FAD bi 100.0 6.8E-28 1.5E-32 209.8 13.5 136 18-156 1-137 (139)
14 PRK13905 murB UDP-N-acetylenol 99.9 1.4E-24 3.1E-29 211.9 13.3 162 15-190 28-193 (298)
15 PRK11183 D-lactate dehydrogena 99.9 5.4E-22 1.2E-26 201.0 18.1 193 15-213 36-289 (564)
16 KOG1232 Proteins containing th 99.9 3.6E-21 7.7E-26 182.6 18.9 188 5-195 77-271 (511)
17 KOG4730 D-arabinono-1, 4-lacto 99.9 2.4E-21 5.2E-26 188.3 17.4 182 10-198 42-226 (518)
18 PRK12436 UDP-N-acetylenolpyruv 99.9 1.1E-21 2.4E-26 191.2 13.6 166 10-189 28-197 (305)
19 TIGR00179 murB UDP-N-acetyleno 99.9 2.8E-21 6.2E-26 186.8 13.3 162 15-188 10-174 (284)
20 PRK14652 UDP-N-acetylenolpyruv 99.9 5.8E-21 1.3E-25 185.7 14.3 162 15-190 33-196 (302)
21 PRK13903 murB UDP-N-acetylenol 99.8 1.5E-20 3.3E-25 185.9 15.4 163 15-190 30-197 (363)
22 PRK13906 murB UDP-N-acetylenol 99.8 1.7E-20 3.8E-25 182.8 13.6 161 16-189 35-197 (307)
23 PRK14649 UDP-N-acetylenolpyruv 99.8 1E-17 2.2E-22 162.7 16.9 164 15-189 18-192 (295)
24 KOG1233 Alkyl-dihydroxyacetone 99.8 1.4E-17 3.1E-22 158.5 16.6 185 12-201 155-351 (613)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 2.9E-16 6.4E-21 151.8 12.7 157 17-190 33-194 (297)
26 PF08031 BBE: Berberine and be 99.7 1.6E-17 3.5E-22 114.6 2.7 47 405-462 1-47 (47)
27 KOG1262 FAD-binding protein DI 99.7 2.9E-16 6.2E-21 150.0 8.8 169 23-193 59-232 (543)
28 COG0812 MurB UDP-N-acetylmuram 99.6 1.4E-14 3.1E-19 137.3 14.1 170 8-189 10-183 (291)
29 PRK14650 UDP-N-acetylenolpyruv 99.6 1E-14 2.2E-19 140.7 12.4 160 17-190 32-195 (302)
30 PRK00046 murB UDP-N-acetylenol 99.6 1.8E-14 4E-19 141.0 11.5 159 17-189 20-188 (334)
31 PRK14648 UDP-N-acetylenolpyruv 99.5 9E-14 1.9E-18 135.9 13.3 164 17-190 29-237 (354)
32 PRK14651 UDP-N-acetylenolpyruv 99.4 4.8E-12 1E-16 120.5 11.9 157 9-189 11-170 (273)
33 PRK13904 murB UDP-N-acetylenol 98.9 3.2E-09 6.9E-14 100.2 9.5 148 10-190 10-160 (257)
34 PF09265 Cytokin-bind: Cytokin 96.8 0.0036 7.9E-08 60.0 7.1 126 317-462 148-281 (281)
35 PF00941 FAD_binding_5: FAD bi 94.8 0.037 8.1E-07 49.6 4.3 77 18-99 2-80 (171)
36 PRK09799 putative oxidoreducta 94.3 0.15 3.2E-06 49.0 7.5 139 20-185 4-155 (258)
37 TIGR03312 Se_sel_red_FAD proba 93.4 0.26 5.7E-06 47.2 7.4 71 21-98 4-76 (257)
38 PLN00107 FAD-dependent oxidore 93.2 0.21 4.6E-06 47.0 6.1 27 430-458 171-197 (257)
39 TIGR02963 xanthine_xdhA xanthi 91.2 0.55 1.2E-05 49.1 7.0 80 18-102 192-273 (467)
40 PF04030 ALO: D-arabinono-1,4- 89.5 0.45 9.8E-06 45.6 4.4 28 429-458 227-254 (259)
41 TIGR03195 4hydrxCoA_B 4-hydrox 89.5 0.55 1.2E-05 46.4 5.0 74 20-98 6-81 (321)
42 PF02913 FAD-oxidase_C: FAD li 88.6 0.43 9.2E-06 44.9 3.5 75 366-456 169-244 (248)
43 PRK09971 xanthine dehydrogenas 88.6 0.68 1.5E-05 45.3 4.9 74 20-98 6-82 (291)
44 TIGR03199 pucC xanthine dehydr 86.6 1.1 2.4E-05 43.2 5.0 71 24-98 1-73 (264)
45 PLN02906 xanthine dehydrogenas 78.9 2.8 6.1E-05 49.6 5.3 78 20-102 230-309 (1319)
46 TIGR00387 glcD glycolate oxida 77.9 1.7 3.8E-05 44.7 2.9 29 429-457 382-411 (413)
47 TIGR02969 mam_aldehyde_ox alde 77.4 5.4 0.00012 47.3 7.0 78 19-101 237-316 (1330)
48 PLN00192 aldehyde oxidase 76.9 5.6 0.00012 47.2 7.0 84 18-103 233-317 (1344)
49 COG1319 CoxM Aerobic-type carb 69.0 16 0.00034 35.5 6.8 75 18-97 3-80 (284)
50 PRK11230 glycolate oxidase sub 66.7 6.5 0.00014 41.6 4.0 33 429-461 439-472 (499)
51 COG4630 XdhA Xanthine dehydrog 65.7 13 0.00029 37.0 5.5 140 18-169 203-352 (493)
52 KOG4730 D-arabinono-1, 4-lacto 63.5 3.6 7.9E-05 41.8 1.3 21 437-457 485-505 (518)
53 COG1519 KdtA 3-deoxy-D-manno-o 62.5 51 0.0011 33.6 9.2 34 17-50 260-293 (419)
54 PRK11282 glcE glycolate oxidas 47.8 11 0.00025 37.8 1.9 21 437-457 324-345 (352)
55 COG4981 Enoyl reductase domain 38.8 39 0.00084 35.5 4.1 41 15-55 149-196 (717)
56 TIGR01676 GLDHase galactonolac 35.8 20 0.00044 38.1 1.6 20 439-458 515-534 (541)
57 PLN02465 L-galactono-1,4-lacto 33.0 26 0.00056 37.6 1.9 27 429-458 538-564 (573)
58 COG4359 Uncharacterized conser 30.9 55 0.0012 29.5 3.3 26 30-55 78-103 (220)
59 KOG3282 Uncharacterized conser 30.5 65 0.0014 28.8 3.6 37 8-46 117-153 (190)
60 KOG2499 Beta-N-acetylhexosamin 29.8 45 0.00098 34.5 2.9 29 24-52 246-276 (542)
61 PRK06186 hypothetical protein; 26.2 60 0.0013 30.5 2.8 26 25-50 66-91 (229)
62 PF01113 DapB_N: Dihydrodipico 25.8 92 0.002 25.9 3.7 36 17-52 67-102 (124)
63 PRK04322 peptidyl-tRNA hydrola 24.2 2.1E+02 0.0045 23.6 5.4 42 9-52 41-83 (113)
64 cd06568 GH20_SpHex_like A subg 23.6 76 0.0016 31.6 3.2 28 25-52 72-101 (329)
65 PF03941 INCENP_ARK-bind: Inne 23.6 27 0.00059 24.8 0.0 28 427-457 18-45 (57)
66 COG1058 CinA Predicted nucleot 22.9 1.3E+02 0.0028 28.8 4.4 34 18-52 38-71 (255)
67 cd02742 GH20_hexosaminidase Be 22.9 81 0.0017 30.9 3.3 29 24-52 68-98 (303)
68 PF03614 Flag1_repress: Repres 22.8 64 0.0014 27.8 2.1 40 20-59 8-48 (165)
69 PF03392 OS-D: Insect pheromon 22.5 52 0.0011 26.2 1.5 14 443-456 79-92 (95)
70 COG0351 ThiD Hydroxymethylpyri 22.5 2.4E+02 0.0053 27.0 6.2 72 23-104 151-225 (263)
71 PF14658 EF-hand_9: EF-hand do 22.4 57 0.0012 24.1 1.5 16 439-454 34-49 (66)
72 cd05014 SIS_Kpsf KpsF-like pro 22.3 1.4E+02 0.0031 24.4 4.3 30 23-52 56-85 (128)
73 cd06565 GH20_GcnA-like Glycosy 21.7 88 0.0019 30.7 3.2 29 24-52 56-86 (301)
74 cd02429 PTH2_like Peptidyl-tRN 21.3 1.9E+02 0.004 24.0 4.6 32 16-47 54-85 (116)
75 cd06570 GH20_chitobiase-like_1 21.3 92 0.002 30.7 3.3 28 25-52 65-94 (311)
76 PF12108 SF3a60_bindingd: Spli 21.2 46 0.00099 20.1 0.7 12 437-448 11-22 (28)
77 TIGR00178 monomer_idh isocitra 21.2 7.2E+02 0.016 26.9 9.6 129 27-169 312-460 (741)
78 PF05378 Hydant_A_N: Hydantoin 20.7 1.7E+02 0.0036 26.2 4.5 36 20-55 126-161 (176)
79 PF00728 Glyco_hydro_20: Glyco 20.6 80 0.0017 31.4 2.8 29 24-52 69-99 (351)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=4.2e-41 Score=345.42 Aligned_cols=190 Identities=20% Similarity=0.330 Sum_probs=169.1
Q ss_pred ccccCCCCCCCCccEEEEcCCHHHHHHHHHHHH--HcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCc-------e
Q 046660 6 QNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQ--KHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSE-------I 76 (474)
Q Consensus 6 ~~~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~--~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~-------i 76 (474)
+...|.......|.+|++|+|++||+++|++|+ ++++++++||+|||+.|.+...+ +++|||++||+ +
T Consensus 53 ~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~---GivIdms~Ln~i~~~~~ii 129 (525)
T PLN02441 53 ASKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG---GVVVDMRSLRGGVRGPPVI 129 (525)
T ss_pred HhcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC---eEEEECCCCCCcCccCceE
Confidence 456788877889999999999999999999997 67999999999999998877655 89999999999 3
Q ss_pred EEcCCCCEEEEcCCCcHHHHHHHHHhcCCceeec-CCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEE
Q 046660 77 NVDAEEKTAWVQAGATLGQLYYRIAEGSKNLGFP-AGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLL 155 (474)
Q Consensus 77 ~~d~~~~~~~v~~G~~~~~~~~~l~~~~~~~~~~-~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~ 155 (474)
++|.+..+|+|++|++|.|+++++.++| ++.+ .+.+..+++||.+.+||+|..+.+||..+|+|+++|||++||+++
T Consensus 130 ~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv 207 (525)
T PLN02441 130 VVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVV 207 (525)
T ss_pred EEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEE
Confidence 7889999999999999999999999986 4332 345567889999999999999999999999999999999999999
Q ss_pred e-ccCCCchhhhhhccccCcceeEEEEEEEEEeecCceEEEEEEEec
Q 046660 156 D-RKSMGEDLFWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRT 201 (474)
Q Consensus 156 ~-~~~~~~dl~~a~rG~g~~~fGvvt~~~~~~~p~~~~~~~~~~~~~ 201 (474)
+ ++++|+|||||++||+ |+|||||++++|++|.|+......+.|.
T Consensus 208 ~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~ 253 (525)
T PLN02441 208 TCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYS 253 (525)
T ss_pred EeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcC
Confidence 6 7778999999999988 7999999999999999997666566554
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=2.3e-34 Score=293.83 Aligned_cols=197 Identities=23% Similarity=0.375 Sum_probs=170.6
Q ss_pred cCCCCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEE
Q 046660 9 RFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWV 87 (474)
Q Consensus 9 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v 87 (474)
.|+......|.+|+.|+|++||+++|++|+++++++.++|+|||+.+.... + +++|||++||+| ++|+++++|+|
T Consensus 6 nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-~---gvvIdl~~l~~i~~id~~~~~vtV 81 (438)
T TIGR01678 6 NWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-D---GFLIHLDKMNKVLQFDKEKKQITV 81 (438)
T ss_pred eCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-C---eEEEEhhhcCCceEEcCCCCEEEE
Confidence 477777889999999999999999999999999999999999999876553 3 799999999997 99999999999
Q ss_pred cCCCcHHHHHHHHHhcCCceeec-CCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe-ccCCCchhh
Q 046660 88 QAGATLGQLYYRIAEGSKNLGFP-AGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD-RKSMGEDLF 165 (474)
Q Consensus 88 ~~G~~~~~~~~~l~~~~~~~~~~-~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dl~ 165 (474)
++|+++.+|.+.|.++| +.++ .|.++.++|||.+.+|++|. +.+||..+|+|++++||++||++++ +..+++|||
T Consensus 82 ~aG~~l~~L~~~L~~~G--l~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf 158 (438)
T TIGR01678 82 EAGIRLYQLHEQLDEHG--YSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVF 158 (438)
T ss_pred cCCCCHHHHHHHHHHcC--CEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHH
Confidence 99999999999999987 5555 57888899999999999996 6899999999999999999999996 667789999
Q ss_pred hhhccccCcceeEEEEEEEEEeecCceEEEEEEEecchHHHHHHHHHHHHHHH
Q 046660 166 WAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIAN 218 (474)
Q Consensus 166 ~a~rG~g~~~fGvvt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
||.+|+. |+|||||++|||++|........ .. ..+.+++..|++...
T Consensus 159 ~a~~~~~-G~lGIIt~vtl~l~p~~~l~~~~--~~---~~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 159 QAARVSL-GCLGIIVTVTIQVVPQFHLQETS--FV---STLKELLDNWDSHWK 205 (438)
T ss_pred HHHhcCC-CceEeeEEEEEEEEeccceEEEE--ec---CCHHHHHHHHHHHhh
Confidence 9999988 79999999999999977643221 11 234566767766543
No 3
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1e-34 Score=302.79 Aligned_cols=190 Identities=20% Similarity=0.302 Sum_probs=167.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHH
Q 046660 16 PKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLG 94 (474)
Q Consensus 16 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~ 94 (474)
..|.+|++|+|++||+++|++|+++++|+.+||||||+.|.+...+ ++++|||++||+| ++|+++.+++||||+++.
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~--ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~ 209 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH--GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWL 209 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC--CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHH
Confidence 4799999999999999999999999999999999999988776543 4899999999998 799999999999999999
Q ss_pred HHHHHHHhcCCceeecCCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe--cc----CCCchhhhhh
Q 046660 95 QLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD--RK----SMGEDLFWAI 168 (474)
Q Consensus 95 ~~~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~--~~----~~~~dl~~a~ 168 (474)
+|+++|.++| +.++...++.++|||.++++++|..+.+||..+|+|++++||++||++++ .. ..++||||++
T Consensus 210 ~L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~ 287 (555)
T PLN02805 210 ELNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLV 287 (555)
T ss_pred HHHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHh
Confidence 9999999986 66777777778899999999999999999999999999999999999995 11 2468999999
Q ss_pred ccccCcceeEEEEEEEEEeecCceEEEEEEEecchHHHHHHH
Q 046660 169 RGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIV 210 (474)
Q Consensus 169 rG~g~~~fGvvt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 210 (474)
+|+. |+|||||+++||++|.|+......+.|+..+++.+++
T Consensus 288 ~Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av 328 (555)
T PLN02805 288 IGSE-GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVA 328 (555)
T ss_pred ccCC-CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHH
Confidence 9998 7999999999999999987666666666434444444
No 4
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=9.6e-34 Score=289.17 Aligned_cols=195 Identities=23% Similarity=0.327 Sum_probs=162.5
Q ss_pred cCCCCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEE
Q 046660 9 RFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWV 87 (474)
Q Consensus 9 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v 87 (474)
.|+......|.+|+.|+|++||+++|++|++ ++.++|+|||+.+.+.. + +++|||++||+| ++|+++++|+|
T Consensus 3 nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-~---g~~idl~~l~~i~~~d~~~~~v~v 75 (419)
T TIGR01679 3 NWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-D---GTMISLTGLQGVVDVDQPTGLATV 75 (419)
T ss_pred CCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-C---CEEEEhhHcCCceeecCCCCEEEE
Confidence 5888778899999999999999999999974 79999999999876543 3 699999999997 99999999999
Q ss_pred cCCCcHHHHHHHHHhcCCceeecCCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe-ccCCCchhhh
Q 046660 88 QAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD-RKSMGEDLFW 166 (474)
Q Consensus 88 ~~G~~~~~~~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dl~~ 166 (474)
++|+++.||.+.|.++|..+... |.+..++|||.+.+|++|.. ..||..+|+|++++||++||++++ ++.+|+||||
T Consensus 76 ~aG~~l~~l~~~L~~~G~~l~~~-~~~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~ 153 (419)
T TIGR01679 76 EAGTRLGALGPQLAQRGLGLENQ-GDIDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYL 153 (419)
T ss_pred cCCCCHHHHHHHHHHcCCccccC-CCCCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHH
Confidence 99999999999999988543332 44556789999999999974 689999999999999999999996 6678999999
Q ss_pred hhccccCcceeEEEEEEEEEeecCceEEEEEEEecchHHHHHHHHHHHHHHH
Q 046660 167 AIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIAN 218 (474)
Q Consensus 167 a~rG~g~~~fGvvt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
|+|||+ |+|||||++|||++|.++...... .. ...+++..+.++..
T Consensus 154 a~~g~~-G~lGVIt~vtl~~~p~~~~~~~~~-~~----~~~~~~~~~~~~~~ 199 (419)
T TIGR01679 154 AARVSL-GALGVISQVTLQTVALFRLRRRDW-RR----PLAQTLERLDEFVD 199 (419)
T ss_pred HHHhCC-CceEEEEEEEEEeecceEeEEEEE-ec----CHHHHHHHHHHHHh
Confidence 999998 799999999999999876432211 11 23445555666544
No 5
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=7.2e-33 Score=288.29 Aligned_cols=182 Identities=19% Similarity=0.227 Sum_probs=159.7
Q ss_pred ccCCCCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEc-CCCCCCCCCccCCCCcEEEEEcCCCCc-eEEcCCCCEE
Q 046660 8 FRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRS-GGHDFEGLSYVSDHVPFVIIDLIKLSE-INVDAEEKTA 85 (474)
Q Consensus 8 ~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~-gGh~~~~~~~~~~~~~~~~idl~~~~~-i~~d~~~~~~ 85 (474)
..|+......|.+|++|+|++||+++|++|+++++++.++| +||++.+.+...+.+++++|||++||+ ++||.++++|
T Consensus 22 ~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tV 101 (557)
T TIGR01677 22 GAFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTV 101 (557)
T ss_pred hhcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEE
Confidence 46999999999999999999999999999999999999996 699987755443101369999999999 5999999999
Q ss_pred EEcCCCcHHHHHHHHHhcCCceeecCC-CCCcccccccccCCCCCCcc-ccccccccceeEEEEEccCC------cEEe-
Q 046660 86 WVQAGATLGQLYYRIAEGSKNLGFPAG-SCHTVGVGGHFSGGGYGFMM-RKFGLAADHVVDAHLVDAEG------RLLD- 156 (474)
Q Consensus 86 ~v~~G~~~~~~~~~l~~~~~~~~~~~g-~~~~vgvgG~~~ggg~g~~~-~~~G~~~d~v~~~~vv~~~G------~~~~- 156 (474)
+|++|+++.+|.+.|.++| +.++.+ .+..++|||.+.+|++|... ++||+.+|+|++++||++|| ++++
T Consensus 102 tV~AG~~l~~L~~~L~~~G--lal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~ 179 (557)
T TIGR01677 102 TVESGMSLRELIVEAEKAG--LALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRIL 179 (557)
T ss_pred EECCCCcHHHHHHHHHHcC--CEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEe
Confidence 9999999999999999987 556554 44667899999999999866 68999999999999999998 7775
Q ss_pred ccCCCchhhhhhccccCcceeEEEEEEEEEeecCce
Q 046660 157 RKSMGEDLFWAIRGGGGASFGVVVAWKVRLVTVPST 192 (474)
Q Consensus 157 ~~~~~~dl~~a~rG~g~~~fGvvt~~~~~~~p~~~~ 192 (474)
+..+|+|||||+|||+ |+|||||++|||++|.+..
T Consensus 180 s~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~ 214 (557)
T TIGR01677 180 SEGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKR 214 (557)
T ss_pred CCCCCHHHHHhhccCC-CccEeeeEEEEEEEccccc
Confidence 6678899999999998 7999999999999998763
No 6
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=3.6e-33 Score=286.50 Aligned_cols=197 Identities=22% Similarity=0.296 Sum_probs=171.0
Q ss_pred ccCCCCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce-EEcCCCCEEE
Q 046660 8 FRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAW 86 (474)
Q Consensus 8 ~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~ 86 (474)
.+|+......|..+++|+|++||+++|++|+++++++.++|+|||+.+.+...+ .+|||++||+| +||+++++|+
T Consensus 52 ~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~g----~lldL~~ln~Vl~vD~~~~tVt 127 (541)
T TIGR01676 52 SNWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSRA----GMVNLALMDKVLEVDEEKKRVR 127 (541)
T ss_pred cccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCCC----eEEEhhhCCCCEEEcCCCCEEE
Confidence 379998899999999999999999999999999999999999999998777654 57999999997 9999999999
Q ss_pred EcCCCcHHHHHHHHHhcCCceeec-CCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe-ccCCCchh
Q 046660 87 VQAGATLGQLYYRIAEGSKNLGFP-AGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD-RKSMGEDL 164 (474)
Q Consensus 87 v~~G~~~~~~~~~l~~~~~~~~~~-~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dl 164 (474)
|++|+++.||.++|.++| ++++ .|.++.++|||.+.+|+||.. .+||..+|+|++++||++||+++. +..+|+||
T Consensus 128 V~AG~~l~~L~~~L~~~G--lal~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdL 204 (541)
T TIGR01676 128 VQAGIRVQQLVDAIKEYG--ITLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPEL 204 (541)
T ss_pred EcCCCCHHHHHHHHHHcC--CEeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHH
Confidence 999999999999999987 5555 477888999999999999985 479999999999999999999996 66789999
Q ss_pred hhhhccccCcceeEEEEEEEEEeecCceEEEEEEEecchHHHHHHHHHHHHHH
Q 046660 165 FWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIA 217 (474)
Q Consensus 165 ~~a~rG~g~~~fGvvt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
|||+|||+ |+|||||++|||++|.+.... ..... .+.++++.+.++.
T Consensus 205 F~Aargsl-G~LGVItevTLr~~Pa~~l~~-~~~~~----~~~e~l~~~~~~~ 251 (541)
T TIGR01676 205 FFLARCGL-GGLGVVAEVTLQCVERQELVE-HTFIS----NMKDIKKNHKKFL 251 (541)
T ss_pred HHHHhcCC-CceEeEEEEEEEEEeccceeE-EEEec----CHHHHHHHHHHHH
Confidence 99999998 799999999999999887432 11112 2455666666654
No 7
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.3e-31 Score=279.43 Aligned_cols=185 Identities=26% Similarity=0.393 Sum_probs=161.1
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCc
Q 046660 14 NTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGAT 92 (474)
Q Consensus 14 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~ 92 (474)
....|.+|+.|+|++||+++|++|.++++|+++||+|||+.|.+...+ +++|||++||+| ++|+++++++|+||++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~~---gvvl~l~~mn~i~~id~~~~~~~v~aGv~ 104 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPDG---GVVLDLSRLNRILEIDPEDGTATVQAGVT 104 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCCC---cEEEEchhhcchhccCcCCCEEEEcCCcc
Confidence 346899999999999999999999999999999999999998776553 799999999999 7999999999999999
Q ss_pred HHHHHHHHHhcCCceeecCCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe--c----cCCCchhhh
Q 046660 93 LGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD--R----KSMGEDLFW 166 (474)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~--~----~~~~~dl~~ 166 (474)
+.+|.++|.++|+.+.+.+++..+++|||++.++++|..+.+||...|+|++++||++||++++ . +....||++
T Consensus 105 l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~ 184 (459)
T COG0277 105 LEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTA 184 (459)
T ss_pred HHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHH
Confidence 9999999999875444444444478999999999999999999999999999999999999995 2 234579999
Q ss_pred hhccccCcceeEEEEEEEEEeecCceEEEEEEEecc
Q 046660 167 AIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTM 202 (474)
Q Consensus 167 a~rG~g~~~fGvvt~~~~~~~p~~~~~~~~~~~~~~ 202 (474)
+.-|+. |+|||||++++|++|.|+........+..
T Consensus 185 l~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~~~ 219 (459)
T COG0277 185 LFVGSE-GTLGIITEATLKLLPLPETKATAVAGFPS 219 (459)
T ss_pred hcccCC-ccceEEEEEEEEeccCCchheEEEEeCCC
Confidence 888877 89999999999999988865554444443
No 8
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=8.2e-32 Score=279.74 Aligned_cols=194 Identities=19% Similarity=0.297 Sum_probs=164.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCc
Q 046660 14 NTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGAT 92 (474)
Q Consensus 14 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~ 92 (474)
....|.+|++|+|++||+++|++|+++++|+.+||+||+..|.+.... ++++|||++||+| ++|+++.+++||||++
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~--~gividl~~ln~I~~id~~~~~v~VeaGv~ 129 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE--KGVLLVMARFNRILDINPVGRRARVQPGVR 129 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC--CcEEEEcccCCCceEEcCCCCEEEEcCCcc
Confidence 356899999999999999999999999999999999999877655432 3899999999998 9999999999999999
Q ss_pred HHHHHHHHHhcCCceeecCCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe-c----cCCCchhhhh
Q 046660 93 LGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD-R----KSMGEDLFWA 167 (474)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~----~~~~~dl~~a 167 (474)
+.+|.++|.++|..+...++.....+|||.+.+++.|..+.+||...|+|++++||++||++++ . ...++||+|+
T Consensus 130 ~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l 209 (499)
T PRK11230 130 NLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLAL 209 (499)
T ss_pred HHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhh
Confidence 9999999999874322223444456799999999999999999999999999999999999996 2 1347899999
Q ss_pred hccccCcceeEEEEEEEEEeecCceEEEEEEEecchHHHHHHH
Q 046660 168 IRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIV 210 (474)
Q Consensus 168 ~rG~g~~~fGvvt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 210 (474)
++|+. |+|||||+++||++|.|+......+.|...+++.+++
T Consensus 210 ~~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~ 251 (499)
T PRK11230 210 FTGSE-GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAV 251 (499)
T ss_pred hccCC-CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHH
Confidence 99998 7999999999999999987666666665433333333
No 9
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=1.1e-30 Score=252.76 Aligned_cols=178 Identities=21% Similarity=0.342 Sum_probs=151.0
Q ss_pred CCCCCCCCccEEEEcCCHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCCCccCCCCcEEEEEcC---CCCce-EEcCCCC
Q 046660 10 FSTANTPKPQVIITPLHVSHVQAAIKCSQKH--GLQIRIRSGGHDFEGLSYVSDHVPFVIIDLI---KLSEI-NVDAEEK 83 (474)
Q Consensus 10 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~--~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~---~~~~i-~~d~~~~ 83 (474)
|....+..|.+|..|+|++||++++|+|... ++|+++||+|||..|.+.... +|++|.|+ .|+.+ .+..++.
T Consensus 56 Fg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~--~GvvV~m~~~~~~~~~~~~~~~~~ 133 (505)
T KOG1231|consen 56 FGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR--GGVVVCMDSSLLMKDVPVLVVDDL 133 (505)
T ss_pred ccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC--CCeEEEEehhhccCCCceeecccc
Confidence 3334466999999999999999999999999 999999999999999777632 38666654 45666 5566678
Q ss_pred EEEEcCCCcHHHHHHHHHhcCCceeecCCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe-ccCCCc
Q 046660 84 TAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD-RKSMGE 162 (474)
Q Consensus 84 ~~~v~~G~~~~~~~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~ 162 (474)
.+.|.||..|-||.+++.++|.--..+.-..+ ..|||.+..+|+|.++.+||-..+||++++||+++|++++ ++..|+
T Consensus 134 yvdV~~g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~ 212 (505)
T KOG1231|consen 134 YVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANS 212 (505)
T ss_pred eEEeeCChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCc
Confidence 99999999999999999998731022222222 6788999999999999999999999999999999999996 777899
Q ss_pred hhhhhhccccCcceeEEEEEEEEEeecCc
Q 046660 163 DLFWAIRGGGGASFGVVVAWKVRLVTVPS 191 (474)
Q Consensus 163 dl~~a~rG~g~~~fGvvt~~~~~~~p~~~ 191 (474)
+||.++-||- |+|||||+++++++|+|+
T Consensus 213 ~lf~~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 213 NLFFLVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeeeeeccC-cceeeEEEEEEEeccCCc
Confidence 9999999998 799999999999999994
No 10
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=2.7e-30 Score=254.92 Aligned_cols=169 Identities=22% Similarity=0.307 Sum_probs=145.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEcCCC-CCCCCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHHHHHHHHHhc
Q 046660 26 HVSHVQAAIKCSQKHGLQIRIRSGGH-DFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLGQLYYRIAEG 103 (474)
Q Consensus 26 ~~~dv~~~v~~a~~~~~~~~v~~gGh-~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~~~~~~l~~~ 103 (474)
.++||+++|++|+++++|+.++|||| ++.+... + +++|||++||+| ++|+++.+++|++|+++.||.++|.++
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~~--~---~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~ 77 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRAL--A---GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEA 77 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCCC--C---CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHc
Confidence 57999999999999999999999997 4556532 3 579999999998 999999999999999999999999999
Q ss_pred CCceeecCC-CCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe------ccCCCchhhhhhccccCcce
Q 046660 104 SKNLGFPAG-SCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD------RKSMGEDLFWAIRGGGGASF 176 (474)
Q Consensus 104 ~~~~~~~~g-~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~------~~~~~~dl~~a~rG~g~~~f 176 (474)
|..+++.++ .+...+|||.+.+|++|..+.+||..+|+|+++++|++||++++ ++..++||||+++|+. |+|
T Consensus 78 G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-GtL 156 (352)
T PRK11282 78 GQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GTL 156 (352)
T ss_pred CCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-chh
Confidence 865555333 44457899999999999999999999999999999999999996 1235689999999998 899
Q ss_pred eEEEEEEEEEeecCceEEEEEEEe
Q 046660 177 GVVVAWKVRLVTVPSTVTLFTVIR 200 (474)
Q Consensus 177 Gvvt~~~~~~~p~~~~~~~~~~~~ 200 (474)
||||+++||++|.|+....+.+.+
T Consensus 157 GVitevtlkl~P~p~~~~t~~~~~ 180 (352)
T PRK11282 157 GVLLEVSLKVLPRPRAELTLRLEM 180 (352)
T ss_pred hhheEEEEEEEecCceEEEEEEec
Confidence 999999999999998654444443
No 11
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=4.7e-30 Score=262.43 Aligned_cols=187 Identities=21% Similarity=0.296 Sum_probs=157.9
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHHHHHHH
Q 046660 21 IITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLGQLYYR 99 (474)
Q Consensus 21 vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~~~~~~ 99 (474)
||+|+|++||+++|++|+++++|+.+|||||++.|.+...+ ++++|||++||+| ++|+++++++||||+++.+|.++
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~--~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~ 78 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE--GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQA 78 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC--CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHH
Confidence 57899999999999999999999999999999887665443 4899999999998 99999999999999999999999
Q ss_pred HHhcCCceeecCCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe-c-----cCCCchhhhhhccccC
Q 046660 100 IAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD-R-----KSMGEDLFWAIRGGGG 173 (474)
Q Consensus 100 l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~-----~~~~~dl~~a~rG~g~ 173 (474)
|.++|..+.+.+++.....+||.+.+++.|..+.+||...|+|++++||++||++++ . ...++||+|.+.|+.
T Consensus 79 l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~- 157 (413)
T TIGR00387 79 VEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE- 157 (413)
T ss_pred HHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC-
Confidence 999874332223444456789999999999999999999999999999999999996 1 234689999999988
Q ss_pred cceeEEEEEEEEEeecCceEEEEEEEecchHHHHHHH
Q 046660 174 ASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIV 210 (474)
Q Consensus 174 ~~fGvvt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 210 (474)
|+|||||+++||++|.|+......+.|...+++.+++
T Consensus 158 GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~ 194 (413)
T TIGR00387 158 GTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAV 194 (413)
T ss_pred ccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHH
Confidence 7999999999999999987655556665434444443
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.97 E-value=4.7e-29 Score=258.19 Aligned_cols=198 Identities=21% Similarity=0.301 Sum_probs=167.8
Q ss_pred ccCCCCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce-EEcCCCCEEE
Q 046660 8 FRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAW 86 (474)
Q Consensus 8 ~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~ 86 (474)
.+|+......|.+++.|+|++||+++|++|+++++++.++|+|||+.+....++ .+|||++|++| ++|+++++|+
T Consensus 87 ~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td~----glIdL~~l~~Il~vD~e~~~Vt 162 (573)
T PLN02465 87 SNWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSRE----GMVNLALMDKVLEVDKEKKRVT 162 (573)
T ss_pred cccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCCC----EEEECcCCCCcEEEeCCCCEEE
Confidence 479999999999999999999999999999999999999999999988776554 46899999997 9999999999
Q ss_pred EcCCCcHHHHHHHHHhcCCceeecC-CCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe-ccCCCchh
Q 046660 87 VQAGATLGQLYYRIAEGSKNLGFPA-GSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD-RKSMGEDL 164 (474)
Q Consensus 87 v~~G~~~~~~~~~l~~~~~~~~~~~-g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dl 164 (474)
|++|+++.+|.+.|.++| |+++. |.+...+|||.+..|+||... .+|..+|+|++++||+++|+++. +..+++||
T Consensus 163 V~AG~~l~~L~~~L~~~G--Lal~n~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdL 239 (573)
T PLN02465 163 VQAGARVQQVVEALRPHG--LTLQNYASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPEL 239 (573)
T ss_pred EccCCCHHHHHHHHHHcC--CEeccCCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHH
Confidence 999999999999999987 45553 455677899999999999864 68999999999999999999886 66678999
Q ss_pred hhhhccccCcceeEEEEEEEEEeecCceEEEEEEEecchHHHHHHHHHHHHHHH
Q 046660 165 FWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRTMKQNATKIVHEWQYIAN 218 (474)
Q Consensus 165 ~~a~rG~g~~~fGvvt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
|||.|++. |.|||||++|||++|.++... -....+ ..++++.+.++..
T Consensus 240 F~aar~gl-G~lGVIteVTLql~P~~~L~~-~~~~~~----~~~~~~~~~~~~~ 287 (573)
T PLN02465 240 FRLARCGL-GGLGVVAEVTLQCVPAHRLVE-HTFVSN----RKEIKKNHKKWLS 287 (573)
T ss_pred HhHhhccC-CCCcEEEEEEEEEEecCceEE-EEEEec----HHHHHHHHHHHHH
Confidence 99999988 789999999999999887432 112222 3445556666543
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.95 E-value=6.8e-28 Score=209.84 Aligned_cols=136 Identities=35% Similarity=0.580 Sum_probs=124.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCc-eEEcCCCCEEEEcCCCcHHHH
Q 046660 18 PQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSE-INVDAEEKTAWVQAGATLGQL 96 (474)
Q Consensus 18 p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~-i~~d~~~~~~~v~~G~~~~~~ 96 (474)
|.+|++|+|++||+++|++|+++++++.++|+||++.+.+...+ +++|||++|++ +++|+++++++|++|++|.||
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~~---~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l 77 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDEG---GIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDL 77 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSSTT---EEEEECTTCGCEEEEETTTTEEEEETTSBHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccCC---cEEEeeccccccccccccceeEEEeccccchhc
Confidence 88999999999999999999999999999999999987766344 89999999999 599999999999999999999
Q ss_pred HHHHHhcCCceeecCCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe
Q 046660 97 YYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD 156 (474)
Q Consensus 97 ~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~ 156 (474)
+++|.+++..+.+.++.+..+++||++.+|++|..++.||+.+|+|+++++|++||++++
T Consensus 78 ~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 78 YEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred ccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 999988874333447888888999999999999999999999999999999999999985
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=1.4e-24 Score=211.91 Aligned_cols=162 Identities=22% Similarity=0.253 Sum_probs=135.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCC-CCceEEcCCCCEEEEcCCCcH
Q 046660 15 TPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIK-LSEINVDAEEKTAWVQAGATL 93 (474)
Q Consensus 15 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~-~~~i~~d~~~~~~~v~~G~~~ 93 (474)
...|.+++.|+|++||+++|++|+++++|+.++|+|||......+.+ +++|||++ |+.|++ ++.+++|++|+.|
T Consensus 28 gg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~---gvvI~l~~~l~~i~~--~~~~v~v~aG~~~ 102 (298)
T PRK13905 28 GGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR---GVVIRLGKGLNEIEV--EGNRITAGAGAPL 102 (298)
T ss_pred CceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc---eEEEEecCCcceEEe--cCCEEEEECCCcH
Confidence 45788999999999999999999999999999999999765433333 79999998 999865 3568999999999
Q ss_pred HHHHHHHHhcCC-ceeecCCCCCcccccccccCCCCCCcccccc-ccccceeEEEEEccCCcEEeccCCCchhhhhhccc
Q 046660 94 GQLYYRIAEGSK-NLGFPAGSCHTVGVGGHFSGGGYGFMMRKFG-LAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGG 171 (474)
Q Consensus 94 ~~~~~~l~~~~~-~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rG~ 171 (474)
.+|.++|.++|. ++.+. +|+.| ++||+++++++.|| ..+|+|+++++|++||+++... +.|++|++|++
T Consensus 103 ~~L~~~l~~~Gl~gle~~------~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s 173 (298)
T PRK13905 103 IKLARFAAEAGLSGLEFA------AGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHS 173 (298)
T ss_pred HHHHHHHHHcCCCcchhc------cCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCccc
Confidence 999999999885 34444 44444 45688888888898 7899999999999999999632 35999999998
Q ss_pred cCc-ceeEEEEEEEEEeecC
Q 046660 172 GGA-SFGVVVAWKVRLVTVP 190 (474)
Q Consensus 172 g~~-~fGvvt~~~~~~~p~~ 190 (474)
+.+ .+||||+++||++|..
T Consensus 174 ~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 174 ALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred cCCCCCEEEEEEEEEEcCCC
Confidence 754 4899999999999963
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.88 E-value=5.4e-22 Score=201.03 Aligned_cols=193 Identities=16% Similarity=0.171 Sum_probs=155.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCC---CcEEEEEcCCCCce-EEcCCCCEEEEcCC
Q 046660 15 TPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDH---VPFVIIDLIKLSEI-NVDAEEKTAWVQAG 90 (474)
Q Consensus 15 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~---~~~~~idl~~~~~i-~~d~~~~~~~v~~G 90 (474)
...|.+||.|.|++||+++|++|.++++++.+||||.+..|.+...+. .++|+|||++||+| +|| ++.+++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999887776430 13799999999998 788 5678999999
Q ss_pred CcHHHHHHHHHhcCCceeecC--CCC-CcccccccccCCCCCCccccccccccceeEEEEEccCCcE-------Ee--c-
Q 046660 91 ATLGQLYYRIAEGSKNLGFPA--GSC-HTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRL-------LD--R- 157 (474)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~--g~~-~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~-------~~--~- 157 (474)
+++.+|.++|.++|. .++. |++ -...|||.+..+.-|....+||...+.++. ++|++||++ ++ .
T Consensus 115 Vtl~~LeeaLk~~Gl--~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~ 191 (564)
T PRK11183 115 TTLYQLEKALKPLGR--EPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGET 191 (564)
T ss_pred CcHHHHHHHHHHhCC--CCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCC
Confidence 999999999999874 2332 232 223577888888888899999999999999 999999999 32 1
Q ss_pred --------cCCCc----------------------------------hhhhhh--ccccCcceeEEEEEEEEEeecCceE
Q 046660 158 --------KSMGE----------------------------------DLFWAI--RGGGGASFGVVVAWKVRLVTVPSTV 193 (474)
Q Consensus 158 --------~~~~~----------------------------------dl~~a~--rG~g~~~fGvvt~~~~~~~p~~~~~ 193 (474)
+..+. |+--.+ -|+- |.+||+ +++++++|.|+..
T Consensus 192 ~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~ 269 (564)
T PRK11183 192 PEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNT 269 (564)
T ss_pred HHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcc
Confidence 11223 666666 6776 799999 9999999999988
Q ss_pred EEEEEEecchHHHHHHHHHH
Q 046660 194 TLFTVIRTMKQNATKIVHEW 213 (474)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~ 213 (474)
.++.+.+...+.+.++....
T Consensus 270 ~vf~ig~n~~~~~~~~rr~i 289 (564)
T PRK11183 270 QVFYIGTNDPAVLTEIRRHI 289 (564)
T ss_pred eEEEEeCCCHHHHHHHHHHH
Confidence 88888877655555555443
No 16
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.87 E-value=3.6e-21 Score=182.58 Aligned_cols=188 Identities=20% Similarity=0.269 Sum_probs=167.4
Q ss_pred cccccCCCCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce-EEcCCCC
Q 046660 5 IQNFRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEK 83 (474)
Q Consensus 5 ~~~~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~ 83 (474)
.+|..|..........|.+|.|+++|++++++|+++++.+++.||-.+..|.|...- +-|||.|.+||+| ++|+-.+
T Consensus 77 ~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf--DEiVlsl~~mNKi~sfDevsG 154 (511)
T KOG1232|consen 77 NFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF--DEIVLSLGLMNKILSFDEVSG 154 (511)
T ss_pred hhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch--HHHhhhhhhhccccccccccc
Confidence 467889998899999999999999999999999999999999999999888777654 3799999999998 8999999
Q ss_pred EEEEcCCCcHHHHHHHHHhcCCceeecCCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe------c
Q 046660 84 TAWVQAGATLGQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD------R 157 (474)
Q Consensus 84 ~~~v~~G~~~~~~~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~------~ 157 (474)
++++.+||.+.++..+|+++|+.+++.-|.-++.-|||.+....-|..--+||...-+|+++|+|+|+|+|+. .
T Consensus 155 il~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRK 234 (511)
T KOG1232|consen 155 ILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRK 234 (511)
T ss_pred eEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcc
Confidence 9999999999999999999987666666777777799999988888888899999999999999999999994 3
Q ss_pred cCCCchhhhhhccccCcceeEEEEEEEEEeecCceEEE
Q 046660 158 KSMGEDLFWAIRGGGGASFGVVVAWKVRLVTVPSTVTL 195 (474)
Q Consensus 158 ~~~~~dl~~a~rG~g~~~fGvvt~~~~~~~p~~~~~~~ 195 (474)
..+..||-...-|+- |++||||.+++-+.|.|+.+..
T Consensus 235 DNTgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 235 DNTGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred cCccccchhheecCC-ceeeEEeeEEEeecCCCcceeE
Confidence 446688888888887 7999999999999999986543
No 17
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.87 E-value=2.4e-21 Score=188.29 Aligned_cols=182 Identities=25% Similarity=0.308 Sum_probs=159.8
Q ss_pred CCCCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEc
Q 046660 10 FSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQ 88 (474)
Q Consensus 10 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~ 88 (474)
|..+..++.+-|-+|+|++|+.++|+.|++++.++++.|.|||..+..+.+ |.+|+|.+||++ ++|++..++||+
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd----g~lisl~~lnkVv~~dpe~~tvTV~ 117 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD----GLLISLDKLNKVVEFDPELKTVTVQ 117 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc----ccEEEhhhhccceeeCchhceEEec
Confidence 555666778889999999999999999999999999999999999887765 589999999997 999999999999
Q ss_pred CCCcHHHHHHHHHhcCCceeec-CCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe-ccCCCchhhh
Q 046660 89 AGATLGQLYYRIAEGSKNLGFP-AGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD-RKSMGEDLFW 166 (474)
Q Consensus 89 ~G~~~~~~~~~l~~~~~~~~~~-~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dl~~ 166 (474)
+|+++.||.+++++.| |.++ .+....+.|||.+..|.||...+-|+.....++...++.+||.++. ++...||+|.
T Consensus 118 aGirlrQLie~~~~~G--lsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~ 195 (518)
T KOG4730|consen 118 AGIRLRQLIEELAKLG--LSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFN 195 (518)
T ss_pred cCcCHHHHHHHHHhcC--ccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHh
Confidence 9999999999999876 5555 3566778899999999999988878888888888888889998775 7777899999
Q ss_pred hhccccCcceeEEEEEEEEEeecCceEEEEEE
Q 046660 167 AIRGGGGASFGVVVAWKVRLVTVPSTVTLFTV 198 (474)
Q Consensus 167 a~rG~g~~~fGvvt~~~~~~~p~~~~~~~~~~ 198 (474)
|.|-+- |-+|||.++||++.|.-+....+.+
T Consensus 196 AAkvSL-G~LGVIs~VTl~~vp~Fk~s~t~~v 226 (518)
T KOG4730|consen 196 AAKVSL-GVLGVISQVTLSVVPAFKRSLTYVV 226 (518)
T ss_pred hhhhcc-cceeEEEEEEEEEEecceeeeEEEE
Confidence 999998 6899999999999998876655554
No 18
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=1.1e-21 Score=191.24 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=136.9
Q ss_pred CCC-CCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCceEEcCCCCEEEEc
Q 046660 10 FST-ANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQ 88 (474)
Q Consensus 10 ~~~-~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i~~d~~~~~~~v~ 88 (474)
|+. .....|.+++.|+|++||++++++|+++++|+.++|||||......+.+ +++|+|++|+.|+++ +.+++|+
T Consensus 28 ~tt~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~---GvvI~l~~l~~i~~~--~~~v~v~ 102 (305)
T PRK12436 28 HTHIKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR---GITVSLIHITGVTVT--GTTIVAQ 102 (305)
T ss_pred ccCcccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee---EEEEEeCCcCcEEEe--CCEEEEE
Confidence 444 3355799999999999999999999999999999999999874333333 899999999999876 4589999
Q ss_pred CCCcHHHHHHHHHhcCC-ceeecCCCCCcccccccccCCCCCCcccccc-ccccceeEEEEEccCCcEEeccCCCchhhh
Q 046660 89 AGATLGQLYYRIAEGSK-NLGFPAGSCHTVGVGGHFSGGGYGFMMRKFG-LAADHVVDAHLVDAEGRLLDRKSMGEDLFW 166 (474)
Q Consensus 89 ~G~~~~~~~~~l~~~~~-~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vv~~~G~~~~~~~~~~dl~~ 166 (474)
+|+.|.+|.+++.++|. ++.++.|.+++|| |+..++++.|| ...|.+.+++|+++||+++... +.|+.|
T Consensus 103 aG~~~~~L~~~~~~~gl~Gle~~~giPGtVG-------Gav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~--~~e~~f 173 (305)
T PRK12436 103 CGAAIIDVSRIALDHNLTGLEFACGIPGSVG-------GALYMNAGAYGGEISFVLTEAVVMTGDGELRTLT--KEAFEF 173 (305)
T ss_pred eCCcHHHHHHHHHHcCCccchhhcCCccchh-------HHHHhcCccchhehheeeeEEEEEeCCCCEEEEE--HHHhcC
Confidence 99999999999999986 5667777777765 67777777788 5678888999999999999732 359999
Q ss_pred hhccccC-cceeEEEEEEEEEeec
Q 046660 167 AIRGGGG-ASFGVVVAWKVRLVTV 189 (474)
Q Consensus 167 a~rG~g~-~~fGvvt~~~~~~~p~ 189 (474)
++|.+.- .+..||++++|++.+.
T Consensus 174 ~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 174 GYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred cCCCCcCCCCCEEEEEEEEEEcCC
Confidence 9998742 2357999999999874
No 19
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.86 E-value=2.8e-21 Score=186.82 Aligned_cols=162 Identities=19% Similarity=0.199 Sum_probs=138.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCceEEcCCCCEEEEcCCCcHH
Q 046660 15 TPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLG 94 (474)
Q Consensus 15 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i~~d~~~~~~~v~~G~~~~ 94 (474)
...|.+++.|+|++||+++|++|+++++|+.|+|||||....+...+ +++|++++|+.+.+++ +.+++|++|+.|.
T Consensus 10 gg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~---gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~ 85 (284)
T TIGR00179 10 GGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG---GVIINLGKGIDIEDDE-GEYVHVGGGENWH 85 (284)
T ss_pred CceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC---eEEEECCCCceEEEec-CCEEEEEcCCcHH
Confidence 45789999999999999999999999999999999999887665554 8999999999887766 5799999999999
Q ss_pred HHHHHHHhcCCceeecCCCCCcccccccccCCCCCCcccccccccc-ceeEEEEEccCCcEEeccCCCchhhhhhccccC
Q 046660 95 QLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAAD-HVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGG 173 (474)
Q Consensus 95 ~~~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d-~v~~~~vv~~~G~~~~~~~~~~dl~~a~rG~g~ 173 (474)
+|.+++.++|. .|.+..+|+.| ++||+++++++.||..++ .|++++||++||+++... +.|+.|++|-+.-
T Consensus 86 ~l~~~~~~~Gl-----~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~--~~~~~f~YR~S~f 157 (284)
T TIGR00179 86 KLVKYALKNGL-----SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLT--NEQLGFGYRTSIF 157 (284)
T ss_pred HHHHHHHHCCC-----cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEE--HHHccccCCcccc
Confidence 99999999873 36777777777 688999999999999886 689999999999998633 3599999996542
Q ss_pred cc-e-eEEEEEEEEEee
Q 046660 174 AS-F-GVVVAWKVRLVT 188 (474)
Q Consensus 174 ~~-f-Gvvt~~~~~~~p 188 (474)
.. . .||++++|++.+
T Consensus 158 ~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 158 QHKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCCCcEEEEEEEEEecc
Confidence 11 2 699999999844
No 20
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=5.8e-21 Score=185.73 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=132.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCC-CCceEEcCCCCEEEEcCCCcH
Q 046660 15 TPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIK-LSEINVDAEEKTAWVQAGATL 93 (474)
Q Consensus 15 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~-~~~i~~d~~~~~~~v~~G~~~ 93 (474)
...|.+++.|+|++||++++++|+++++|+.++|||||......+.+ +++|+|++ ++.+.++ +.+++||+|+.|
T Consensus 33 gg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~---gvVI~l~~~~~~i~~~--~~~v~v~AG~~~ 107 (302)
T PRK14652 33 GGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR---GVVLRLPQDFPGESTD--GGRLVLGAGAPI 107 (302)
T ss_pred CCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe---eEEEEecCCcceEEec--CCEEEEECCCcH
Confidence 45788999999999999999999999999999999999764333333 79999976 5666544 469999999999
Q ss_pred HHHHHHHHhcCCceeecCCCCCcccccccccCCCCCCccc-cccccccceeEEEEEccCCcEEeccCCCchhhhhhcccc
Q 046660 94 GQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMR-KFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGG 172 (474)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~-~~G~~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rG~g 172 (474)
.+|.+++.++|. .|.+..+|+.| ++||+..++++ ++|..+|+|+++++|++|| .+.. ...|+.|++|+..
T Consensus 108 ~~L~~~~~~~GL-----~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~--~~~e~~f~YR~s~ 178 (302)
T PRK14652 108 SRLPARAHAHGL-----VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFV--PAAALGYAYRTCR 178 (302)
T ss_pred HHHHHHHHHcCC-----cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEe--ehhhcCcccceec
Confidence 999999999873 26677777777 77899999986 6668899999999999999 4332 2359999999864
Q ss_pred CcceeEEEEEEEEEeecC
Q 046660 173 GASFGVVVAWKVRLVTVP 190 (474)
Q Consensus 173 ~~~fGvvt~~~~~~~p~~ 190 (474)
-+..||||+++||++|..
T Consensus 179 ~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 179 LPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cCCCeEEEEEEEEEecCC
Confidence 222389999999999853
No 21
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=1.5e-20 Score=185.87 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=135.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCceEEcCCCCEEEEcCCCcHH
Q 046660 15 TPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLG 94 (474)
Q Consensus 15 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i~~d~~~~~~~v~~G~~~~ 94 (474)
...+.+++.|+|++|+++++++|+++++|+.|+|+|||..-...+.+ ++||+++ ++.++++.+..+++|++|+.|.
T Consensus 30 Gg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~---GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~ 105 (363)
T PRK13903 30 GGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD---GTVVRVA-TRGVTVDCGGGLVRAEAGAVWD 105 (363)
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc---EEEEEeC-CCcEEEeCCCCEEEEEcCCCHH
Confidence 44788899999999999999999999999999999999765444344 8999998 5889887666799999999999
Q ss_pred HHHHHHHhcCC-ceeecCCCCCcccccccccCCCCCCccccccc-cccceeEEEEEccC-CcEEeccCCCchhhhhhccc
Q 046660 95 QLYYRIAEGSK-NLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGL-AADHVVDAHLVDAE-GRLLDRKSMGEDLFWAIRGG 171 (474)
Q Consensus 95 ~~~~~l~~~~~-~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~-G~~~~~~~~~~dl~~a~rG~ 171 (474)
+|.+++.++|. |+.+..|.++||| |+.-++.+.||. ..|.|.++++++.+ |++++.. +.|++|++|++
T Consensus 106 ~l~~~a~~~GL~GlE~laGIPGTVG-------GAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S 176 (363)
T PRK13903 106 DVVARTVEAGLGGLECLSGIPGSAG-------ATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTS 176 (363)
T ss_pred HHHHHHHHcCCccccccCCCCcchh-------hHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceecccc
Confidence 99999999987 6788899999887 444455555664 57999999999854 9998633 46999999985
Q ss_pred c--CcceeEEEEEEEEEeecC
Q 046660 172 G--GASFGVVVAWKVRLVTVP 190 (474)
Q Consensus 172 g--~~~fGvvt~~~~~~~p~~ 190 (474)
. +++++|||+++||++|..
T Consensus 177 ~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 177 VLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred ccCCCCCEEEEEEEEEEEcCC
Confidence 2 135899999999999863
No 22
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=1.7e-20 Score=182.82 Aligned_cols=161 Identities=19% Similarity=0.192 Sum_probs=134.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCceEEcCCCCEEEEcCCCcHHH
Q 046660 16 PKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQ 95 (474)
Q Consensus 16 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i~~d~~~~~~~v~~G~~~~~ 95 (474)
..+.+++.|+|++||+++|++|+++++|+.++|+|||......+.+ +++|+|++|+.++++. .+++||+|+.|.+
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~---GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~ 109 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR---GIVISLLSLDHIEVSD--DAIIAGSGAAIID 109 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc---eEEEEecCccceEEeC--CEEEEECCCcHHH
Confidence 4688899999999999999999999999999999999765444344 8999998999998864 4899999999999
Q ss_pred HHHHHHhcCCceeecCCCCCcccccccccCCCCCCcccccc-ccccceeEEEEEccCCcEEeccCCCchhhhhhccccCc
Q 046660 96 LYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFG-LAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGGA 174 (474)
Q Consensus 96 ~~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rG~g~~ 174 (474)
|.+++.++|. .|....+|+.| +.||+..++++.|| ..+|+|++++||++||+++... ..|+.|++|-+.-.
T Consensus 110 l~~~~~~~Gl-----~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~--~~e~~f~YR~S~~~ 181 (307)
T PRK13906 110 VSRVARDYAL-----TGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLT--TKELELDYRNSIIQ 181 (307)
T ss_pred HHHHHHHcCC-----ccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEE--HHHccCcCCcccCC
Confidence 9999999874 24455556766 67789999999996 8899999999999999999633 35999999965422
Q ss_pred c-eeEEEEEEEEEeec
Q 046660 175 S-FGVVVAWKVRLVTV 189 (474)
Q Consensus 175 ~-fGvvt~~~~~~~p~ 189 (474)
. --||++++|++.|.
T Consensus 182 ~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 182 KEHLVVLEAAFTLAPG 197 (307)
T ss_pred CCCEEEEEEEEEECCC
Confidence 1 24999999999873
No 23
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.77 E-value=1e-17 Score=162.67 Aligned_cols=164 Identities=20% Similarity=0.186 Sum_probs=130.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCC-ceEEcCCCCEEEEcCCCcH
Q 046660 15 TPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLS-EINVDAEEKTAWVQAGATL 93 (474)
Q Consensus 15 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~-~i~~d~~~~~~~v~~G~~~ 93 (474)
.....+++.|+|++|+++++++|+++++|+.|+|+|||....+.+.+ +++|++++++ .+..+.+..+++|++|+.|
T Consensus 18 Gg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~---GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~ 94 (295)
T PRK14649 18 GGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD---GLVARYRGQRWELHEHGDTAEVWVEAGAPM 94 (295)
T ss_pred CceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC---eEEEEecCCCcEEEEeCCcEEEEEEcCCcH
Confidence 34567789999999999999999999999999999999887776665 8999998754 6666655558999999999
Q ss_pred HHHHHHHHhcCCceeecCCCCCcccccccccCC-CCCCccccccccccceeEEEEEccCCcEEeccCCCchhhhhhcccc
Q 046660 94 GQLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGG-GYGFMMRKFGLAADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGG 172 (474)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~g~~~~vgvgG~~~gg-g~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rG~g 172 (474)
.+|..++.++|. .|....+||.| ++|| .++....+.+..+|.|.++++++.+|+++... +.|++|++|-+.
T Consensus 95 ~~l~~~~~~~GL-----~GlE~l~GIPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~--~~el~f~YR~S~ 166 (295)
T PRK14649 95 AGTARRLAAQGW-----AGLEWAEGLPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWS--VHDFAYGYRTSV 166 (295)
T ss_pred HHHHHHHHHcCC-----ccccccCCCCc-chhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEe--HHHcCcccceee
Confidence 999999999874 45556777877 5666 44444444457889999999999999988632 349999999753
Q ss_pred Ccc---------eeEEEEEEEEEeec
Q 046660 173 GAS---------FGVVVAWKVRLVTV 189 (474)
Q Consensus 173 ~~~---------fGvvt~~~~~~~p~ 189 (474)
--. --||++++|++.|.
T Consensus 167 ~~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 167 LKQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred cccccccccccCCeEEEEEEEEECCC
Confidence 211 13899999998874
No 24
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=158.52 Aligned_cols=185 Identities=21% Similarity=0.295 Sum_probs=157.7
Q ss_pred CCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCC-CCCccCCC-CcEEEEEcCCCCce-EEcCCCCEEEEc
Q 046660 12 TANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFE-GLSYVSDH-VPFVIIDLIKLSEI-NVDAEEKTAWVQ 88 (474)
Q Consensus 12 ~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~-~~~~~~~~-~~~~~idl~~~~~i-~~d~~~~~~~v~ 88 (474)
....+-|..||-|++.+||.++|+.|.+||+-+.+.|||.|.+ +..+..+. ..-+.+|++.||+| =+|.++-|+.++
T Consensus 155 gkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~e 234 (613)
T KOG1233|consen 155 GKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAE 234 (613)
T ss_pred CccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEe
Confidence 3456799999999999999999999999999999999999966 44444432 23466788999998 789999999999
Q ss_pred CCCcHHHHHHHHHhcCCceeecCCCCCc----ccccccccCCCCCCccccccccccceeEEEEEccCCcEEe-----ccC
Q 046660 89 AGATLGQLYYRIAEGSKNLGFPAGSCHT----VGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD-----RKS 159 (474)
Q Consensus 89 ~G~~~~~~~~~l~~~~~~~~~~~g~~~~----vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-----~~~ 159 (474)
+|..-.+|.+.|.+.|. ..|..|. ..+||++.....|+--..||..-|-|+-+++|++.|.+-. .-+
T Consensus 235 aGIvGQ~LERqL~~~G~----t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS 310 (613)
T KOG1233|consen 235 AGIVGQSLERQLNKKGF----TCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMS 310 (613)
T ss_pred cCcchHHHHHHHhhcCc----ccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCccc
Confidence 99999999999999863 4455543 4689999999999999999999999999999999998874 335
Q ss_pred CCchhhhhhccccCcceeEEEEEEEEEeecCceEEEEEEEec
Q 046660 160 MGEDLFWAIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRT 201 (474)
Q Consensus 160 ~~~dl~~a~rG~g~~~fGvvt~~~~~~~p~~~~~~~~~~~~~ 201 (474)
.+||+-.-+-|+- |++||||++++|+.|.|.......+.|+
T Consensus 311 ~GPDihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFP 351 (613)
T KOG1233|consen 311 SGPDIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFP 351 (613)
T ss_pred CCCCcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccC
Confidence 6899999999988 7999999999999999986655556665
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.68 E-value=2.9e-16 Score=151.84 Aligned_cols=157 Identities=17% Similarity=0.259 Sum_probs=130.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCceEEcCCCCEEEEcCCCcHHHH
Q 046660 17 KPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQL 96 (474)
Q Consensus 17 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i~~d~~~~~~~v~~G~~~~~~ 96 (474)
...+++.|+|++|+++++++|++ ++|+.+.|+|+|......+.+ +++|.+++|+.++++. ..++|++|+.|.+|
T Consensus 33 ~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~---gvVI~l~~~~~i~i~~--~~v~v~AG~~l~~L 106 (297)
T PRK14653 33 PVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD---FVVVSTERLDDIFVDN--DKIICESGLSLKKL 106 (297)
T ss_pred EEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc---EEEEEeCCcCceEEeC--CEEEEeCCCcHHHH
Confidence 45568899999999999999999 999999999999887666555 8999998899998863 58999999999999
Q ss_pred HHHHHhcCC-ceeecCCCCCcccccccccCCCCCCccccccc-cccceeEEEEEccCCcEEeccCCCchhhhhhccccCc
Q 046660 97 YYRIAEGSK-NLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGL-AADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGGA 174 (474)
Q Consensus 97 ~~~l~~~~~-~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rG~g~~ 174 (474)
..++.++|. |+.+..|..+||| |..-++.+.||. ..|.|.++++++ +|++++.. +.|+-|.+|-..-.
T Consensus 107 ~~~~~~~GL~GlE~l~gIPGTVG-------GAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~--~~e~~f~YR~S~~~ 176 (297)
T PRK14653 107 CLVAAKNGLSGFENAYGIPGSVG-------GAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLG--KNEIKFSYRNSIFK 176 (297)
T ss_pred HHHHHHCCCcchhhhcCCchhHH-------HHHHHhCccCchhhheeEEEEEEEC-CCEEEEEc--hhhccccCccccCC
Confidence 999999986 5666666655544 778888888998 789999999999 78777632 34999999954311
Q ss_pred ---ceeEEEEEEEEEeecC
Q 046660 175 ---SFGVVVAWKVRLVTVP 190 (474)
Q Consensus 175 ---~fGvvt~~~~~~~p~~ 190 (474)
.+ |||+++||+.|..
T Consensus 177 ~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 177 EEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred CCCcE-EEEEEEEEEecCC
Confidence 33 9999999999853
No 26
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.68 E-value=1.6e-17 Score=114.62 Aligned_cols=47 Identities=45% Similarity=0.786 Sum_probs=34.8
Q ss_pred ccccCCCCccCCCCCCCcchhhhhhhhhhhccccHHHHHHhhhhcCCCCCccCCCCCC
Q 046660 405 AYLNYRDLDIGTNNHGYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIL 462 (474)
Q Consensus 405 ~Y~Ny~d~d~~~~~~~~~~~~~~~~~~~~yfg~n~~RL~~IK~kyDP~~vF~~~q~I~ 462 (474)
+|+||+|.+++ ...|.+.|||+||+||++||++|||+|||+++|+|+
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 59999998865 137999999999999999999999999999999996
No 27
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.65 E-value=2.9e-16 Score=149.97 Aligned_cols=169 Identities=22% Similarity=0.250 Sum_probs=139.3
Q ss_pred EcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCC--CcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHHHHHHH
Q 046660 23 TPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDH--VPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLGQLYYR 99 (474)
Q Consensus 23 ~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~--~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~~~~~~ 99 (474)
.-+.+.+||+-|+..+..+-+-.+..+.-+|...|..... ...--|++..|..| ++|.++.||+|+|+++++++.++
T Consensus 59 H~qrVkkIqkqlkew~d~s~k~~lctaRp~Wltvs~r~~dykk~h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~ 138 (543)
T KOG1262|consen 59 HQQRVKKIQKQLKEWLDDSEKKPLCTARPGWLTVSTRFFDYKKCHHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKF 138 (543)
T ss_pred HHHHHHHHHHHHHhhccccccCcccccCCCeEEEEEecchhhhhcccCCHHHHhHHHhcchhcceEEecCCccHHHHHHH
Confidence 3456778888888887777766666777777765554321 12355677755554 99999999999999999999999
Q ss_pred HHhcCCceeecCCCCCcccccccccCCCCCCccccccccccceeEEEEEccCCcEEe--ccCCCchhhhhhccccCccee
Q 046660 100 IAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLAADHVVDAHLVDAEGRLLD--RKSMGEDLFWAIRGGGGASFG 177 (474)
Q Consensus 100 l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~--~~~~~~dl~~a~rG~g~~~fG 177 (474)
|-+.|..|++.+-. ....|||++-|-|+-..|.+|||..|.+.+.|||+|||++++ ..++++|||.|+-++. |++|
T Consensus 139 lip~g~tLaV~~El-dDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSq-GTlg 216 (543)
T KOG1262|consen 139 LIPKGYTLAVLPEL-DDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLG 216 (543)
T ss_pred hccCCceeeeeccc-ccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEccccc-Cchh
Confidence 99998877766544 556788999999999999999999999999999999999996 4558999999999998 7999
Q ss_pred EEEEEEEEEeecCceE
Q 046660 178 VVVAWKVRLVTVPSTV 193 (474)
Q Consensus 178 vvt~~~~~~~p~~~~~ 193 (474)
..+.+++|+.|..+.+
T Consensus 217 fLVaatiriIkvK~Yv 232 (543)
T KOG1262|consen 217 FLVAATIRIIKVKKYV 232 (543)
T ss_pred eeeeeEEEEEeccceE
Confidence 9999999999987744
No 28
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=1.4e-14 Score=137.33 Aligned_cols=170 Identities=24% Similarity=0.274 Sum_probs=143.0
Q ss_pred ccCCCCC-CCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCceEEcCCCCEEE
Q 046660 8 FRFSTAN-TPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAW 86 (474)
Q Consensus 8 ~r~~~~~-~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i~~d~~~~~~~ 86 (474)
.||++.. ......++.|++++|+.++++++.+.++|+.+.|+|+|..-..-+.+ +++|.+.+++.++++.+...++
T Consensus 10 ~~~ttfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~---gvvi~~~~~~~~~~~~~~~~i~ 86 (291)
T COG0812 10 KRYTTFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG---GVVIKLGKLNFIEIEGDDGLIE 86 (291)
T ss_pred ccceeEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc---eEEEEcccccceeeeccCCeEE
Confidence 4555554 44667789999999999999999999999999999999765555554 8999999999998877777999
Q ss_pred EcCCCcHHHHHHHHHhcCC-ceeecCCCCCcccccccccCCCCCCccccccc-cccceeEEEEEccCCcEEeccCCCchh
Q 046660 87 VQAGATLGQLYYRIAEGSK-NLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGL-AADHVVDAHLVDAEGRLLDRKSMGEDL 164 (474)
Q Consensus 87 v~~G~~~~~~~~~l~~~~~-~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dl 164 (474)
+++|+.|.+|.+.+.++|. ||.+..|..+||| |..-++.+.||. ..|.+.++++++.+|++.... +.||
T Consensus 87 a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGsvG-------gav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~--~~el 157 (291)
T COG0812 87 AGAGAPWHDLVRFALENGLSGLEFLAGIPGSVG-------GAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLS--AEEL 157 (291)
T ss_pred EccCCcHHHHHHHHHHcCCcchhhhcCCCcccc-------hhhhccCcccccchheeEEEEEEEcCCCCEEEEE--HHHh
Confidence 9999999999999999987 6888888888776 788889999996 569999999999999999632 4599
Q ss_pred hhhhccccCcce-eEEEEEEEEEeec
Q 046660 165 FWAIRGGGGASF-GVVVAWKVRLVTV 189 (474)
Q Consensus 165 ~~a~rG~g~~~f-Gvvt~~~~~~~p~ 189 (474)
-|++|-+.-..= .||++++|++.|-
T Consensus 158 ~f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 158 GFGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred CcccccCcCCCCCEEEEEEEEEeCCC
Confidence 999996552222 8999999999885
No 29
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.59 E-value=1e-14 Score=140.65 Aligned_cols=160 Identities=18% Similarity=0.199 Sum_probs=132.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcc-CCCCcEEEEEcCCCCceEEcCCCCEEEEcCCCcHHH
Q 046660 17 KPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYV-SDHVPFVIIDLIKLSEINVDAEEKTAWVQAGATLGQ 95 (474)
Q Consensus 17 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~-~~~~~~~~idl~~~~~i~~d~~~~~~~v~~G~~~~~ 95 (474)
...+.+.|+|++|+++++++++++++|+.+.|+|+|......+ .+ +++|.+.+|+.++++. ..+++++|+.|.+
T Consensus 32 ~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~---g~vi~~~~~~~i~~~~--~~v~a~AG~~~~~ 106 (302)
T PRK14650 32 ISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID---FPIIYTGHLNKIEIHD--NQIVAECGTNFED 106 (302)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc---eEEEEECCcCcEEEeC--CEEEEEeCCcHHH
Confidence 4456788999999999999999999999999999997765554 44 7888887799998864 4799999999999
Q ss_pred HHHHHHhcCC-ceeecCCCCCcccccccccCCCCCCccccccc-cccceeEEEEEccCCcEEeccCCCchhhhhhccccC
Q 046660 96 LYYRIAEGSK-NLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGL-AADHVVDAHLVDAEGRLLDRKSMGEDLFWAIRGGGG 173 (474)
Q Consensus 96 ~~~~l~~~~~-~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rG~g~ 173 (474)
|..++.++|. |+.+..|..+||| |+.-++.+.||. ..|.|.++++++.+|+++... ..|+-|++|-+.-
T Consensus 107 l~~~~~~~gl~GlE~l~gIPGTVG-------GAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~S~f 177 (302)
T PRK14650 107 LCKFALQNELSGLEFIYGLPGTLG-------GAIWMNARCFGNEISEILDKITFIDEKGKTICKK--FKKEEFKYKISPF 177 (302)
T ss_pred HHHHHHHcCCchhhhhcCCCcchh-------HHHHhhCCccccchheeEEEEEEEECCCCEEEEE--HHHcCcccccccC
Confidence 9999999987 6777788877776 788888999995 569999999999999988632 3599999996542
Q ss_pred cc-eeEEEEEEEEEeecC
Q 046660 174 AS-FGVVVAWKVRLVTVP 190 (474)
Q Consensus 174 ~~-fGvvt~~~~~~~p~~ 190 (474)
.. =.||++++|++.|..
T Consensus 178 ~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 178 QNKNTFILKATLNLKKGN 195 (302)
T ss_pred CCCCEEEEEEEEEEcCCC
Confidence 11 149999999998854
No 30
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.56 E-value=1.8e-14 Score=141.00 Aligned_cols=159 Identities=16% Similarity=0.105 Sum_probs=130.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCceEEc-CCC--CEEEEcCCCcH
Q 046660 17 KPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVD-AEE--KTAWVQAGATL 93 (474)
Q Consensus 17 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i~~d-~~~--~~~~v~~G~~~ 93 (474)
....++.|+|++|+++++++|+++++|+.|.|+|+|..... ..+ |++|.+ +|+.++++ .+. ..+++++|+.|
T Consensus 20 ~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~---g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~~~ 94 (334)
T PRK00046 20 RARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD---GTVLLN-RIKGIEVLSEDDDAWYLHVGAGENW 94 (334)
T ss_pred EEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC---EEEEEe-cCCceEEEecCCCeEEEEEEcCCcH
Confidence 45568899999999999999999999999999999977655 454 788887 49999873 222 28999999999
Q ss_pred HHHHHHHHhcCC-ceeecCCCCCcccccccccCCCCCCcccccccc-ccceeEEEEEccC-CcEEeccCCCchhhhhhcc
Q 046660 94 GQLYYRIAEGSK-NLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLA-ADHVVDAHLVDAE-GRLLDRKSMGEDLFWAIRG 170 (474)
Q Consensus 94 ~~~~~~l~~~~~-~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~-~d~v~~~~vv~~~-G~~~~~~~~~~dl~~a~rG 170 (474)
.+|.+.+.++|. |+.+..|..+||| |..-++.+.||.. .|.|.++++++.+ |+++... +.|+.|++|-
T Consensus 95 ~~l~~~~~~~gl~GlE~l~gIPGTVG-------GAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~--~~e~~f~YR~ 165 (334)
T PRK00046 95 HDLVLWTLQQGMPGLENLALIPGTVG-------AAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLS--AAECRFGYRD 165 (334)
T ss_pred HHHHHHHHHcCchhhHHhcCCCcchh-------HHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEE--HHHcCccccc
Confidence 999999999987 6777777777766 7788889999964 6999999999987 9988632 3599999996
Q ss_pred ccCcc----eeEEEEEEEEEeec
Q 046660 171 GGGAS----FGVVVAWKVRLVTV 189 (474)
Q Consensus 171 ~g~~~----fGvvt~~~~~~~p~ 189 (474)
+.-.. --||++++|++.|-
T Consensus 166 S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 166 SIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred ccCCCCCcCCEEEEEEEEEecCC
Confidence 53221 24999999999984
No 31
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.53 E-value=9e-14 Score=135.87 Aligned_cols=164 Identities=20% Similarity=0.208 Sum_probs=130.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCceEEc---CCCCEEEEcCCCcH
Q 046660 17 KPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVD---AEEKTAWVQAGATL 93 (474)
Q Consensus 17 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i~~d---~~~~~~~v~~G~~~ 93 (474)
....++.|+|.+|+++++++++++++|+.+.|+|+|......+.+ ++||.+++|+.+++. .....++|++|+.|
T Consensus 29 ~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~---G~VI~l~~~~~i~i~~~~~~~~~v~agAG~~~ 105 (354)
T PRK14648 29 AAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP---GLMLSLRRFRSLHTQTQRDGSVLVHAGAGLPV 105 (354)
T ss_pred EEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc---EEEEEeCCcCceEEeeccCCcEEEEEEeCCcH
Confidence 455688999999999999999999999999999999876665555 899999779998752 22247999999999
Q ss_pred HHHHHHHHhcCC-ceeecCCCCCcccccccccCCCCCCcccccccc-ccceeEEEEE--------------------ccC
Q 046660 94 GQLYYRIAEGSK-NLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLA-ADHVVDAHLV--------------------DAE 151 (474)
Q Consensus 94 ~~~~~~l~~~~~-~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~-~d~v~~~~vv--------------------~~~ 151 (474)
.+|..++.++|. |+.+..|..+||| |+.-++.+.||.. .|.|.+++++ +.+
T Consensus 106 ~~Lv~~~~~~gl~GlE~laGIPGTVG-------GAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~~ 178 (354)
T PRK14648 106 AALLAFCAHHALRGLETFAGLPGSVG-------GAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDKR 178 (354)
T ss_pred HHHHHHHHHcCCcchhhhcCCCcchh-------hHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccCC
Confidence 999999999987 6777778777776 7888899999964 6999999999 456
Q ss_pred CcEEe-----------ccCCCchhhhhhccccCcc---------eeEEEEEEEEEeecC
Q 046660 152 GRLLD-----------RKSMGEDLFWAIRGGGGAS---------FGVVVAWKVRLVTVP 190 (474)
Q Consensus 152 G~~~~-----------~~~~~~dl~~a~rG~g~~~---------fGvvt~~~~~~~p~~ 190 (474)
|++.. ..-.+.|+.|++|-+.-.. --||++++|++.|..
T Consensus 179 g~~~~~~~~~~~~~~~~~~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 179 GECLGLDGGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred CceecccccccccccceEecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 77620 0112469999999654221 139999999998753
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.36 E-value=4.8e-12 Score=120.46 Aligned_cols=157 Identities=22% Similarity=0.210 Sum_probs=124.0
Q ss_pred cCCCCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCC-CCceEEcCCCCEEEE
Q 046660 9 RFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIK-LSEINVDAEEKTAWV 87 (474)
Q Consensus 9 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~-~~~i~~d~~~~~~~v 87 (474)
++++.....|+-.+.|+|++|+++++ ++|+.+.|+|+|..-...+.+ +++|.+++ ++.++++. ++
T Consensus 11 ~~tt~riGG~A~~~~p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~---g~vI~l~~~~~~~~~~~-----~a 76 (273)
T PRK14651 11 RYTTLGVGGPAELWTVETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP---ERVIRLGGEFAEWDLDG-----WV 76 (273)
T ss_pred cccEeecCceEEEEecCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc---eEEEEECCcceeEeECC-----EE
Confidence 45555555566555599999999988 589999999999776555555 78898865 67776543 69
Q ss_pred cCCCcHHHHHHHHHhcCC-ceeecCCCCCcccccccccCCCCCCccccccc-cccceeEEEEEccCCcEEeccCCCchhh
Q 046660 88 QAGATLGQLYYRIAEGSK-NLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGL-AADHVVDAHLVDAEGRLLDRKSMGEDLF 165 (474)
Q Consensus 88 ~~G~~~~~~~~~l~~~~~-~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dl~ 165 (474)
++|+.|.+|.+++.++|. |+.+..|..+||| |+.-++.+.||. ..|.|.++++++ +|++++.. +.|+.
T Consensus 77 ~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVG-------GAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e~~ 146 (273)
T PRK14651 77 GGGVPLPGLVRRAARLGLSGLEGLVGIPAQVG-------GAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYS--PDELG 146 (273)
T ss_pred ECCCcHHHHHHHHHHCCCcchhhhcCCCcchh-------hHHHhhCCccccChheeEEEEEEEE-CCCEEEEE--HHHcc
Confidence 999999999999999987 6777788877776 788888999996 569999999997 89988633 35999
Q ss_pred hhhccccCcceeEEEEEEEEEeec
Q 046660 166 WAIRGGGGASFGVVVAWKVRLVTV 189 (474)
Q Consensus 166 ~a~rG~g~~~fGvvt~~~~~~~p~ 189 (474)
|++|-+.-..=-||++++|++.|.
T Consensus 147 f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 147 FGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred ccccccCCCCCEEEEEEEEEECCC
Confidence 999965422214999999999874
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.95 E-value=3.2e-09 Score=100.24 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=111.7
Q ss_pred CCCCCCCCc-cEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCceEEcCCCCEEEEc
Q 046660 10 FSTANTPKP-QVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEINVDAEEKTAWVQ 88 (474)
Q Consensus 10 ~~~~~~~~p-~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i~~d~~~~~~~v~ 88 (474)
++.....-| ...+.|++.+ + ++|+.+.|+|+|..-...+.+ +++ -++.|+.++++. .+++++
T Consensus 10 ~tt~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~---~vv-~~~~~~~~~~~~--~~v~~~ 72 (257)
T PRK13904 10 YSSVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN---LAI-LGKNFDYIKIDG--ECLEIG 72 (257)
T ss_pred cCceeECceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc---EEE-EccCcCeEEEeC--CEEEEE
Confidence 333333334 4456677776 5 899999999999765554443 454 345689998854 479999
Q ss_pred CCCcHHHHHHHHHhcCC-ceeecCCCCCcccccccccCCCCCCccccccc-cccceeEEEEEccCCcEEeccCCCchhhh
Q 046660 89 AGATLGQLYYRIAEGSK-NLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGL-AADHVVDAHLVDAEGRLLDRKSMGEDLFW 166 (474)
Q Consensus 89 ~G~~~~~~~~~l~~~~~-~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dl~~ 166 (474)
+|+.|.+|.+++.++|. |+.+..|..+||| |+.-++.+.||. ..|.|.++++++ |+ + ...|+.|
T Consensus 73 AG~~l~~l~~~~~~~gl~GlE~l~gIPGtVG-------GAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f 138 (257)
T PRK13904 73 GATKSGKIFNYAKKNNLGGFEFLGKLPGTLG-------GLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGF 138 (257)
T ss_pred cCCcHHHHHHHHHHCCCchhhhhcCCCccHH-------HHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcc
Confidence 99999999999999987 6777788877766 777888899985 469999999998 42 2 2359999
Q ss_pred hhccccCcceeEEEEEEEEEeecC
Q 046660 167 AIRGGGGASFGVVVAWKVRLVTVP 190 (474)
Q Consensus 167 a~rG~g~~~fGvvt~~~~~~~p~~ 190 (474)
++|-+.- . .||++++||+.|..
T Consensus 139 ~YR~S~~-~-~iIl~a~f~l~~~~ 160 (257)
T PRK13904 139 GYRSSGI-N-GVILEARFKKTHGF 160 (257)
T ss_pred cccCcCC-C-cEEEEEEEEECCCC
Confidence 9996542 2 49999999999854
No 34
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=96.79 E-value=0.0036 Score=59.97 Aligned_cols=126 Identities=18% Similarity=0.297 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHhhc----CCCcEEEEEEecCCccCCCCCCCC-CCccccCceEEEEEEEec---CCCchhHHHHHHHH
Q 046660 317 IPESAFEGIYDRFAEE----EGQSAVIALIPYGGKMNEISESEI-PFPHRAGNIYKILYLVAW---GEDGASQRYINWIR 388 (474)
Q Consensus 317 l~~~~i~~i~~~~~~~----~~~~~~i~~~~~GGai~~~~~~~t-Af~~R~~~~~~v~~~~~W---~d~~~d~~~~~w~~ 388 (474)
+++..|.++.+..... ......+.++|+-- ++.....+ .-|.-+ ..|.+.+...- ..+..-+...+--+
T Consensus 148 vP~s~i~dF~~~V~~~il~~~~~~GpiLvYP~~~--~kwd~~~s~v~Pde~-vfylv~lLrsa~P~~~~~~l~~l~~qN~ 224 (281)
T PF09265_consen 148 VPKSRIEDFDRGVFKGILKDDGNSGPILVYPLNR--SKWDTRMSAVIPDED-VFYLVALLRSADPSDGPDDLERLLEQNR 224 (281)
T ss_dssp EEHHHHHHHHHHCCCCCTTTS-S-SEEEEEEEEG--GGS-TTSS----SSS-EEEEEEEEE---TTSSCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhccCCCCceEEEEEecc--cccCCCCcccCCCCC-eEEEEEEeCCCCCCCCchhHHHHHHHHH
Confidence 4456677766654331 12234566777531 11111222 234444 45555554432 12333444555555
Q ss_pred HHHhcccCCccCCCCcccccCCCCccCCCCCCCcchhhhhhhhhhhccccHHHHHHhhhhcCCCCCccCCCCCC
Q 046660 389 KLYGYTTPYVSNNPREAYLNYRDLDIGTNNHGYTSYKQASIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIL 462 (474)
Q Consensus 389 ~~~~~l~~~~~~~~~~~Y~Ny~d~d~~~~~~~~~~~~~~~~~~~~yfg~n~~RL~~IK~kyDP~~vF~~~q~I~ 462 (474)
++++..... + ...-.|+.- ..+ .+.|. ..||..|+|+++.|++|||.+++.-.|.|.
T Consensus 225 ~il~~c~~a-g-i~~k~Yl~~---~~t-----------~~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~IF 281 (281)
T PF09265_consen 225 RILEFCRKA-G-IGGKQYLPH---YTT-----------QEDWR-RHFGPKWERFVERKRRYDPKAILAPGQGIF 281 (281)
T ss_dssp HHHHHHHHT-T---EEESS------SS-----------HHHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-SS
T ss_pred HHHHHHHHc-C-CceEECCCC---CCC-----------HHHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCCC
Confidence 555544221 1 011234321 112 34784 688999999999999999999999988873
No 35
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=94.77 E-value=0.037 Score=49.56 Aligned_cols=77 Identities=23% Similarity=0.338 Sum_probs=51.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCC-CCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHHH
Q 046660 18 PQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEG-LSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLGQ 95 (474)
Q Consensus 18 p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~-~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~~ 95 (474)
+..++.|+|.+|..++++ .+-...+.+||++... ...... ....+||++++..+ .|..+++.+++|+++++.+
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~-~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~ 76 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGIL-SPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSE 76 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS----SEEEEGTTSGGGG-EEEETSEEEEETTSBHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCcc-ccceEEEeEEecccccEEEeccEEEECCCccHHH
Confidence 456789999999999998 2335788899998432 111100 12489999987554 3444467999999999999
Q ss_pred HHHH
Q 046660 96 LYYR 99 (474)
Q Consensus 96 ~~~~ 99 (474)
+.+.
T Consensus 77 l~~~ 80 (171)
T PF00941_consen 77 LEES 80 (171)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 9875
No 36
>PRK09799 putative oxidoreductase; Provisional
Probab=94.32 E-value=0.15 Score=48.97 Aligned_cols=139 Identities=16% Similarity=0.106 Sum_probs=81.2
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHHHHHH
Q 046660 20 VIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLGQLYY 98 (474)
Q Consensus 20 ~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~~~~~ 98 (474)
....|+|.+|..++++ +++=...+.+||++....- ... ...++||++++ .. .|..+.+.+++|+++++.++.+
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~~-~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~ 77 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TRT-DKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRD 77 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CCC-CCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHh
Confidence 3678999999988765 3432457899999963211 111 13588999976 44 4445667999999999999986
Q ss_pred HH------HhcCCceeec-CCCCCcccccccccCCCCCCccccccccccc-----eeEEEEEccCCcEEeccCCCchhhh
Q 046660 99 RI------AEGSKNLGFP-AGSCHTVGVGGHFSGGGYGFMMRKFGLAADH-----VVDAHLVDAEGRLLDRKSMGEDLFW 166 (474)
Q Consensus 99 ~l------~~~~~~~~~~-~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~-----v~~~~vv~~~G~~~~~~~~~~dl~~ 166 (474)
.. .+.- ..+- .-.-...++||.+..+- . ..|. .+..+|++.+++.+.. .|+|
T Consensus 78 ~~~~~~~L~~a~--~~vas~qIRN~aTiGGNl~~a~-----p----~sD~~p~LlAldA~v~l~~~r~vpl----~~f~- 141 (258)
T PRK09799 78 ARFIPAALREAL--GFVYSRHLRNQSTIGGEIAARQ-----E----ESVLLPVLLALDAELVFGNGETLSI----EDYL- 141 (258)
T ss_pred CcccHHHHHHHH--HHhCCHHHhccchhHHHhhcCC-----c----cHHHHHHHHHcCCEEEEecCcEEeH----HHhc-
Confidence 32 1110 0010 11113334667765431 1 1333 3566777777754432 2444
Q ss_pred hhccccCcceeEEEEEEEE
Q 046660 167 AIRGGGGASFGVVVAWKVR 185 (474)
Q Consensus 167 a~rG~g~~~fGvvt~~~~~ 185 (474)
.|.. =.|+|++.+.
T Consensus 142 --~g~~---~Eil~~I~iP 155 (258)
T PRK09799 142 --ACPC---DRLLTEIIIP 155 (258)
T ss_pred --CCCC---CcEEEEEEcC
Confidence 2222 2589988765
No 37
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=93.42 E-value=0.26 Score=47.21 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=49.9
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCC-CCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHHHHHH
Q 046660 21 IITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFE-GLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLGQLYY 98 (474)
Q Consensus 21 vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~-~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~~~~~ 98 (474)
++.|+|.+|..++++ +++-.-.+.+||++.. ...... ..++||++++ .. .|..+.+.++||+++++.++.+
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~~~~---~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPTRTD---KKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhcccC---CCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 578999999888765 3432356789999974 222111 2578999875 44 3444557999999999999875
No 38
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=93.18 E-value=0.21 Score=47.02 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=22.5
Q ss_pred hhhhhccccHHHHHHhhhhcCCCCCccCC
Q 046660 430 WGKKYFKNNFDRLVHVKTTVDPHNFFRNE 458 (474)
Q Consensus 430 ~~~~yfg~n~~RL~~IK~kyDP~~vF~~~ 458 (474)
....| .++++.++||+++||+++|.++
T Consensus 171 l~~lY--Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 171 AIAKY--KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCccCCH
Confidence 33444 6899999999999999999865
No 39
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=91.17 E-value=0.55 Score=49.08 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=55.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCC-CCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHHH
Q 046660 18 PQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFE-GLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLGQ 95 (474)
Q Consensus 18 p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~-~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~~ 95 (474)
...++.|+|.+|+.++++- +. ...+.+||++.. ....... ....+||++++..+ .|..+++.++||+++++.|
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~-~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~e 266 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMR-DLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTD 266 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCC-CCCeEEECCCChhhccEEEcCCEEEEecCCcHHH
Confidence 4568999999999988763 32 357789999863 2111111 12588999986554 3444557899999999999
Q ss_pred HHHHHHh
Q 046660 96 LYYRIAE 102 (474)
Q Consensus 96 ~~~~l~~ 102 (474)
+.+.+.+
T Consensus 267 l~~~l~~ 273 (467)
T TIGR02963 267 AYAALAK 273 (467)
T ss_pred HHHHHHH
Confidence 9876654
No 40
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=89.53 E-value=0.45 Score=45.60 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=19.2
Q ss_pred hhhhhhccccHHHHHHhhhhcCCCCCccCC
Q 046660 429 IWGKKYFKNNFDRLVHVKTTVDPHNFFRNE 458 (474)
Q Consensus 429 ~~~~~yfg~n~~RL~~IK~kyDP~~vF~~~ 458 (474)
...+.| +++++.+++|+++||+|+|.++
T Consensus 227 ~l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 227 QLRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 344444 7999999999999999999764
No 41
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=89.50 E-value=0.55 Score=46.40 Aligned_cols=74 Identities=26% Similarity=0.328 Sum_probs=49.7
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCC-CCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHHHHH
Q 046660 20 VIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEG-LSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLGQLY 97 (474)
Q Consensus 20 ~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~-~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~~~~ 97 (474)
..+.|+|.+|..++++- ++ .-.+.+||++... .-.... ....+||++++..+ .|..+.+.++||+++++.|+.
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~-~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~ 80 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLG-QPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALA 80 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccC-CCCeEEECCCChhhccEEecCCEEEEeccCcHHHHh
Confidence 46899999998887663 32 3467899998521 111111 12588999976443 233445789999999999986
Q ss_pred H
Q 046660 98 Y 98 (474)
Q Consensus 98 ~ 98 (474)
+
T Consensus 81 ~ 81 (321)
T TIGR03195 81 E 81 (321)
T ss_pred h
Confidence 4
No 42
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=88.59 E-value=0.43 Score=44.87 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=41.0
Q ss_pred EEEEEEEecCCCchhHHHHHHHHHHHhcccCCccCCCCcccccCCCCccCCCCCCCcchhhhhhhhhhhccc-cHHHHHH
Q 046660 366 YKILYLVAWGEDGASQRYINWIRKLYGYTTPYVSNNPREAYLNYRDLDIGTNNHGYTSYKQASIWGKKYFKN-NFDRLVH 444 (474)
Q Consensus 366 ~~v~~~~~W~d~~~d~~~~~w~~~~~~~l~~~~~~~~~~~Y~Ny~d~d~~~~~~~~~~~~~~~~~~~~yfg~-n~~RL~~ 444 (474)
.++.+...-.++.+.+...++.+++.+.+.... +..+- . + ..+ . ....|-...+|+ .++-+++
T Consensus 169 ~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----G~is~-e-H-G~G-------~--~k~~~~~~~~~~~~~~~~~~ 232 (248)
T PF02913_consen 169 LHLYILFDPRDPEEPERAEALWDELYELVLELG----GSISA-E-H-GIG-------K--LKKPYLEEEYGPAALRLMRA 232 (248)
T ss_dssp EEEEEEEETTSHHHHHHHHHHHHHHHHHHHHTT-----BBSS-S-S-GGG-------H--HHHHHHCHHCHHHHHHHHHH
T ss_pred EEEEeecccchHHHHHHHHHHHHHHHHHHHhcc----ccccc-c-c-chh-------h--hhHHHHHHhcchHHHHHHHH
Confidence 444444333445566677777777766555441 11111 0 0 001 0 112344455565 7999999
Q ss_pred hhhhcCCCCCcc
Q 046660 445 VKTTVDPHNFFR 456 (474)
Q Consensus 445 IK~kyDP~~vF~ 456 (474)
||+.+||+|+++
T Consensus 233 iK~~~DP~~ilN 244 (248)
T PF02913_consen 233 IKQAFDPNGILN 244 (248)
T ss_dssp HHHHH-TTS-BS
T ss_pred hhhccCCccCCC
Confidence 999999999986
No 43
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=88.56 E-value=0.68 Score=45.28 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=50.9
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCC-CCCccCCCCcEEEEEcCCCCce-EEc-CCCCEEEEcCCCcHHHH
Q 046660 20 VIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFE-GLSYVSDHVPFVIIDLIKLSEI-NVD-AEEKTAWVQAGATLGQL 96 (474)
Q Consensus 20 ~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~-~~~~~~~~~~~~~idl~~~~~i-~~d-~~~~~~~v~~G~~~~~~ 96 (474)
-++.|+|.+|..++++- +. ...+.+||++.. ....... ....+||++++... .|. .+++.+++|+++++.++
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~-~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l 80 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHND-RYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQI 80 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCC-CCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHH
Confidence 57899999999888763 22 357789999863 2111111 12588999986544 343 23457999999999999
Q ss_pred HH
Q 046660 97 YY 98 (474)
Q Consensus 97 ~~ 98 (474)
.+
T Consensus 81 ~~ 82 (291)
T PRK09971 81 IE 82 (291)
T ss_pred hc
Confidence 85
No 44
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=86.65 E-value=1.1 Score=43.17 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=48.1
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEcCCCCCC-CCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHHHHHH
Q 046660 24 PLHVSHVQAAIKCSQKHGLQIRIRSGGHDFE-GLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLGQLYY 98 (474)
Q Consensus 24 p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~-~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~~~~~ 98 (474)
|+|.+|+.++++- +. ...+.+||++.. ......-.....+||++++..+ .|..+++.++||+++++.++.+
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~ 73 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRK 73 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhh
Confidence 6788888887774 22 357889999853 2111100012588999987665 4555678999999999999963
No 45
>PLN02906 xanthine dehydrogenase
Probab=78.88 E-value=2.8 Score=49.63 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=53.8
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCC-CCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHHHHH
Q 046660 20 VIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEG-LSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLGQLY 97 (474)
Q Consensus 20 ~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~-~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~~~~ 97 (474)
..+.|+|.+|+.++++- +. ...+.+||++..- ...... ...++||++++..+ .|..+...++||+++++.++.
T Consensus 230 ~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~-~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 230 TWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNA-QYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred eEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccC-CCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 47889999999887653 22 2467899999632 111111 23589999986554 344456789999999999999
Q ss_pred HHHHh
Q 046660 98 YRIAE 102 (474)
Q Consensus 98 ~~l~~ 102 (474)
+.|.+
T Consensus 305 ~~l~~ 309 (1319)
T PLN02906 305 NLFRK 309 (1319)
T ss_pred HHHHH
Confidence 86544
No 46
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=77.88 E-value=1.7 Score=44.71 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=23.8
Q ss_pred hhhhhhcc-ccHHHHHHhhhhcCCCCCccC
Q 046660 429 IWGKKYFK-NNFDRLVHVKTTVDPHNFFRN 457 (474)
Q Consensus 429 ~~~~~yfg-~n~~RL~~IK~kyDP~~vF~~ 457 (474)
.|....|+ ..++-+++||+.+||+|+++-
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 46666666 479999999999999999863
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=77.38 E-value=5.4 Score=47.32 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=54.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCC-CCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHHHH
Q 046660 19 QVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEG-LSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLGQL 96 (474)
Q Consensus 19 ~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~-~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~~~ 96 (474)
...+.|+|.+|+.++++- +. ...+.+||++..- ...... ....+||++++..+ .|..+.+.++||+++++.++
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~-~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el 311 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGV-FHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQV 311 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccC-CCCeEEECCCChhhhcEEEcCCEEEEeccccHHHH
Confidence 357899999999988763 22 3567899999632 211111 12478999986655 34445678999999999999
Q ss_pred HHHHH
Q 046660 97 YYRIA 101 (474)
Q Consensus 97 ~~~l~ 101 (474)
.+.|.
T Consensus 312 ~~~l~ 316 (1330)
T TIGR02969 312 KDILA 316 (1330)
T ss_pred HHHHH
Confidence 98654
No 48
>PLN00192 aldehyde oxidase
Probab=76.91 E-value=5.6 Score=47.23 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=56.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHHHH
Q 046660 18 PQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLGQL 96 (474)
Q Consensus 18 p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~~~ 96 (474)
..-.+.|+|.+|+.+++.-....+-...+..||++..-.-... ...++||++++..+ .|..+++.++||+++++.++
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~~~--~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el 310 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEE--LYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKA 310 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeeccC--CCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHH
Confidence 3468999999999988763110012366789999853221111 12588999986554 34445678999999999999
Q ss_pred HHHHHhc
Q 046660 97 YYRIAEG 103 (474)
Q Consensus 97 ~~~l~~~ 103 (474)
.+.+...
T Consensus 311 ~~~l~~~ 317 (1344)
T PLN00192 311 IEALREE 317 (1344)
T ss_pred HHHHHhh
Confidence 8765543
No 49
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=69.01 E-value=16 Score=35.47 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=51.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC-CccCCCCcEEEEEcCCCC-ce-EEcCCCCEEEEcCCCcHH
Q 046660 18 PQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGL-SYVSDHVPFVIIDLIKLS-EI-NVDAEEKTAWVQAGATLG 94 (474)
Q Consensus 18 p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~-~~~~~~~~~~~idl~~~~-~i-~~d~~~~~~~v~~G~~~~ 94 (474)
+..+.+|.|.+|-.++++ +++ .-.+.+|||+.... -...- ...-+||++++. .. .+..+.+.+++|+-+++.
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~-~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ 77 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIE-RPDHLVDINGLDELLGIVTTEGGSLRIGALVTLT 77 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccC-CcceEEEecCChhhhceEeecCCEEEEeecccHH
Confidence 556788999888777666 454 67888999996531 11111 125689999875 22 333456779999999999
Q ss_pred HHH
Q 046660 95 QLY 97 (474)
Q Consensus 95 ~~~ 97 (474)
|+.
T Consensus 78 ei~ 80 (284)
T COG1319 78 EIA 80 (284)
T ss_pred HHH
Confidence 986
No 50
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=66.72 E-value=6.5 Score=41.58 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=26.0
Q ss_pred hhhhhhcc-ccHHHHHHhhhhcCCCCCccCCCCC
Q 046660 429 IWGKKYFK-NNFDRLVHVKTTVDPHNFFRNEQSI 461 (474)
Q Consensus 429 ~~~~~yfg-~n~~RL~~IK~kyDP~~vF~~~q~I 461 (474)
.|-...|| +.++-+++||+.+||+|+++-..-+
T Consensus 439 ~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~ 472 (499)
T PRK11230 439 NQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNI 472 (499)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEe
Confidence 45555666 6799999999999999999765544
No 51
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=65.71 E-value=13 Score=37.03 Aligned_cols=140 Identities=19% Similarity=0.149 Sum_probs=79.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce-EEcCCCCEEEEcCCCcHHHH
Q 046660 18 PQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI-NVDAEEKTAWVQAGATLGQL 96 (474)
Q Consensus 18 p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i-~~d~~~~~~~v~~G~~~~~~ 96 (474)
-..++.|.+.+|...++. .+=..++..|+.++.-.....-++=..||-+.++..+ +|+..++.+++|+|++..|.
T Consensus 203 ~~r~~~P~~l~D~a~l~a----a~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a 278 (493)
T COG4630 203 DDRFIVPATLADFADLLA----AHPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQA 278 (493)
T ss_pred CceeEeeccHHHHHHHHh----hCCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHH
Confidence 345789999999988875 2334667778877532221111011345556666665 56667789999999999999
Q ss_pred HHHHHhcCCcee--e-cCCCC---CcccccccccCCCCCCccccccccc--cceeEEEEEccCCcEEe-ccCCCchhhhh
Q 046660 97 YYRIAEGSKNLG--F-PAGSC---HTVGVGGHFSGGGYGFMMRKFGLAA--DHVVDAHLVDAEGRLLD-RKSMGEDLFWA 167 (474)
Q Consensus 97 ~~~l~~~~~~~~--~-~~g~~---~~vgvgG~~~ggg~g~~~~~~G~~~--d~v~~~~vv~~~G~~~~-~~~~~~dl~~a 167 (474)
|+.|..+=-.|. + --|.. ..-.+||.+.. .|. -|-+. =..++.+|++-.|+-.+ .. -.|+|-+
T Consensus 279 ~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIan-----gSP-IGDtPPaLIALgA~ltLr~g~~~RtlP--Le~~Fi~ 350 (493)
T COG4630 279 YRALAGRYPALGELWDRFGGEQVRNMGTLGGNIAN-----GSP-IGDTPPALIALGATLTLRSGDGRRTLP--LEDYFIA 350 (493)
T ss_pred HHHHHhhCchHHHHHHHhcchhhhccccccccccC-----CCc-CCCCCchhhhcCcEEEEEecCCccccc--HHHHHHH
Confidence 999987521000 0 01111 11224454433 222 22222 13477788876665443 11 1378887
Q ss_pred hc
Q 046660 168 IR 169 (474)
Q Consensus 168 ~r 169 (474)
++
T Consensus 351 Y~ 352 (493)
T COG4630 351 YG 352 (493)
T ss_pred hh
Confidence 75
No 52
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=63.46 E-value=3.6 Score=41.84 Aligned_cols=21 Identities=29% Similarity=0.782 Sum_probs=19.4
Q ss_pred ccHHHHHHhhhhcCCCCCccC
Q 046660 437 NNFDRLVHVKTTVDPHNFFRN 457 (474)
Q Consensus 437 ~n~~RL~~IK~kyDP~~vF~~ 457 (474)
.|+.+..++|+++||.++|..
T Consensus 485 ~n~~~flkvr~~lDP~~lFss 505 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSS 505 (518)
T ss_pred cChHHHHHHHHhcCccchhhh
Confidence 699999999999999999953
No 53
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=62.53 E-value=51 Score=33.65 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=32.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 046660 17 KPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGG 50 (474)
Q Consensus 17 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gG 50 (474)
....|+.|+-.|-..++.+.++++|+++.-||.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 5678999999999999999999999999999999
No 54
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=47.83 E-value=11 Score=37.78 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=17.9
Q ss_pred cc-HHHHHHhhhhcCCCCCccC
Q 046660 437 NN-FDRLVHVKTTVDPHNFFRN 457 (474)
Q Consensus 437 ~n-~~RL~~IK~kyDP~~vF~~ 457 (474)
.+ .+-.++||++|||+++|+-
T Consensus 324 ~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 324 APLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred HHHHHHHHHHHHhcCcccCCCC
Confidence 44 6788999999999999963
No 55
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=38.76 E-value=39 Score=35.50 Aligned_cols=41 Identities=24% Similarity=0.523 Sum_probs=30.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHcC-CcEEE-----EcCCC-CCCC
Q 046660 15 TPKPQVIITPLHVSHVQAAIKCSQKHG-LQIRI-----RSGGH-DFEG 55 (474)
Q Consensus 15 ~~~p~~vv~p~~~~dv~~~v~~a~~~~-~~~~v-----~~gGh-~~~~ 55 (474)
..-|-.+++|.|+++|..+|++|+++- .|+.+ |+||| ||..
T Consensus 149 ~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweD 196 (717)
T COG4981 149 DGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWED 196 (717)
T ss_pred cCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhh
Confidence 346778899999999999999999974 45544 34455 3544
No 56
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=35.78 E-value=20 Score=38.08 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=18.3
Q ss_pred HHHHHHhhhhcCCCCCccCC
Q 046660 439 FDRLVHVKTTVDPHNFFRNE 458 (474)
Q Consensus 439 ~~RL~~IK~kyDP~~vF~~~ 458 (474)
+.+.++|++++||+++|.++
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 78889999999999999875
No 57
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=33.04 E-value=26 Score=37.64 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=22.4
Q ss_pred hhhhhhccccHHHHHHhhhhcCCCCCccCC
Q 046660 429 IWGKKYFKNNFDRLVHVKTTVDPHNFFRNE 458 (474)
Q Consensus 429 ~~~~~yfg~n~~RL~~IK~kyDP~~vF~~~ 458 (474)
.+.+.| + +++.+++++++||+++|.++
T Consensus 538 ~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 538 RLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 455555 4 99999999999999999875
No 58
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=30.94 E-value=55 Score=29.50 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCCCC
Q 046660 30 VQAAIKCSQKHGLQIRIRSGGHDFEG 55 (474)
Q Consensus 30 v~~~v~~a~~~~~~~~v~~gGh~~~~ 55 (474)
..+.++|++++++||.|.++|-++.-
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~fI 103 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPFI 103 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHH
Confidence 35678899999999999999998643
No 59
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.46 E-value=65 Score=28.84 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=31.1
Q ss_pred ccCCCCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEE
Q 046660 8 FRFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQIRI 46 (474)
Q Consensus 8 ~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v 46 (474)
.||-. -..|..||.+.+++++.++.+-|++.+++..+
T Consensus 117 ~~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 117 RRWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 46754 35899999999999999999999999987543
No 60
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=29.84 E-value=45 Score=34.54 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEE--cCCCC
Q 046660 24 PLHVSHVQAAIKCSQKHGLQIRIR--SGGHD 52 (474)
Q Consensus 24 p~~~~dv~~~v~~a~~~~~~~~v~--~gGh~ 52 (474)
.=|.+||+++|+|||.+|+++.+- .-||.
T Consensus 246 vYT~eDv~evV~yarlRGIRVlpEfD~PgHt 276 (542)
T KOG2499|consen 246 VYTREDVSEVVEYARLRGIRVLPEFDTPGHT 276 (542)
T ss_pred eecHHHHHHHHHHHHhccceeeecccCCccc
Confidence 347799999999999999998764 45665
No 61
>PRK06186 hypothetical protein; Validated
Probab=26.17 E-value=60 Score=30.46 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEcCC
Q 046660 25 LHVSHVQAAIKCSQKHGLQIRIRSGG 50 (474)
Q Consensus 25 ~~~~dv~~~v~~a~~~~~~~~v~~gG 50 (474)
+..+--..++++|+++++|+.=.+.|
T Consensus 66 rg~~Gki~ai~~Are~~iP~LGIClG 91 (229)
T PRK06186 66 RNDDGALTAIRFARENGIPFLGTCGG 91 (229)
T ss_pred ccHhHHHHHHHHHHHcCCCeEeechh
Confidence 56788899999999999999866666
No 62
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=25.81 E-value=92 Score=25.89 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=29.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 046660 17 KPQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHD 52 (474)
Q Consensus 17 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~ 52 (474)
.+.+++.-++.+-+...+++|.++++++.+-.+|.+
T Consensus 67 ~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 67 EADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp H-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred cCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 488999999999999999999999999999888875
No 63
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=24.22 E-value=2.1e+02 Score=23.57 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=33.9
Q ss_pred cCCCCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcE-EEEcCCCC
Q 046660 9 RFSTANTPKPQVIITPLHVSHVQAAIKCSQKHGLQI-RIRSGGHD 52 (474)
Q Consensus 9 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~-~v~~gGh~ 52 (474)
+|.. ...+..|+.+.|++++.++.+-|++.+++. .|+-.|+.
T Consensus 41 ~W~~--~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 41 EWLN--EGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred HHHH--CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 4543 458899999999999999999999999884 56666664
No 64
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=23.61 E-value=76 Score=31.56 Aligned_cols=28 Identities=7% Similarity=0.156 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE--cCCCC
Q 046660 25 LHVSHVQAAIKCSQKHGLQIRIR--SGGHD 52 (474)
Q Consensus 25 ~~~~dv~~~v~~a~~~~~~~~v~--~gGh~ 52 (474)
=|.+||+++|++|+++++.+.+- .=||+
T Consensus 72 YT~~di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCcHHH
Confidence 38999999999999999998654 34776
No 65
>PF03941 INCENP_ARK-bind: Inner centromere protein, ARK binding region; InterPro: IPR005635 This region of the inner centromere protein has been found to be necessary and sufficient for binding to aurora-related kinase. This interaction has been implicated in the coordination of chromosome segregation with cell division in yeast [].; PDB: 2BFX_C 2BFY_C 3ZTX_D 2VGO_D 2VGP_D 2VRX_D 4AF3_D.
Probab=23.59 E-value=27 Score=24.85 Aligned_cols=28 Identities=18% Similarity=0.531 Sum_probs=21.7
Q ss_pred hhhhhhhhccccHHHHHHhhhhcCCCCCccC
Q 046660 427 ASIWGKKYFKNNFDRLVHVKTTVDPHNFFRN 457 (474)
Q Consensus 427 ~~~~~~~yfg~n~~RL~~IK~kyDP~~vF~~ 457 (474)
...|.+ +.++.+...-.+.+||+-+|..
T Consensus 18 iP~WA~---~~~L~~~L~~Q~~~Dpd~IFG~ 45 (57)
T PF03941_consen 18 IPSWAQ---SPNLRQALKKQQNIDPDEIFGP 45 (57)
T ss_dssp --GGGS---HHHHHHHHHHHHHS-HHHHCTT
T ss_pred CCCCcC---cHHHHHHHHHHhccCHHHHcCC
Confidence 347887 6889999999999999999974
No 66
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=22.93 E-value=1.3e+02 Score=28.76 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=29.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 046660 18 PQVIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHD 52 (474)
Q Consensus 18 p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~ 52 (474)
-...+.+.++++|+++|+.|.++ .-+.|.+||-+
T Consensus 38 ~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLG 71 (255)
T COG1058 38 ARITTVGDNPDRIVEALREASER-ADVVITTGGLG 71 (255)
T ss_pred EEEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcC
Confidence 34568899999999999999999 99999999954
No 67
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=22.92 E-value=81 Score=30.91 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=23.9
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEE--cCCCC
Q 046660 24 PLHVSHVQAAIKCSQKHGLQIRIR--SGGHD 52 (474)
Q Consensus 24 p~~~~dv~~~v~~a~~~~~~~~v~--~gGh~ 52 (474)
.=|.+||+++|++|+++|+.+.+- .=||.
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 357899999999999999998653 45776
No 68
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=22.85 E-value=64 Score=27.80 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=32.8
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCcEEEEcC-CCCCCCCCcc
Q 046660 20 VIITPLHVSHVQAAIKCSQKHGLQIRIRSG-GHDFEGLSYV 59 (474)
Q Consensus 20 ~vv~p~~~~dv~~~v~~a~~~~~~~~v~~g-Gh~~~~~~~~ 59 (474)
+=+-|++.+.+...++|++.+++|+.+.+. |+.+.++-.+
T Consensus 8 AEvwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~myV~g 48 (165)
T PF03614_consen 8 AEVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMYVSG 48 (165)
T ss_pred cccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEEEec
Confidence 347799999999999999999999987765 8887665443
No 69
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=22.51 E-value=52 Score=26.23 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=10.4
Q ss_pred HHhhhhcCCCCCcc
Q 046660 443 VHVKTTVDPHNFFR 456 (474)
Q Consensus 443 ~~IK~kyDP~~vF~ 456 (474)
.+|.+||||+|-+.
T Consensus 79 ~~l~~KyDp~~~y~ 92 (95)
T PF03392_consen 79 EELVKKYDPEGKYR 92 (95)
T ss_dssp HHHHHHHTTT-TTH
T ss_pred HHHHHHHCCCcchh
Confidence 56789999999764
No 70
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=22.47 E-value=2.4e+02 Score=27.03 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=46.9
Q ss_pred EcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCCCCce---EEcCCCCEEEEcCCCcHHHHHHH
Q 046660 23 TPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIKLSEI---NVDAEEKTAWVQAGATLGQLYYR 99 (474)
Q Consensus 23 ~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~~~~i---~~d~~~~~~~v~~G~~~~~~~~~ 99 (474)
..+|.+|++++-+...+.|.+-++.=|||... ...+ ++.|-..+..+ .++.. =+=|.||++.-...+
T Consensus 151 ~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~---~~~D----~l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa 220 (263)
T COG0351 151 KIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG---EAVD----VLYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAA 220 (263)
T ss_pred ccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC---Ccee----EEEcCCceEEEeccccCCC---CCCCccHHHHHHHHH
Confidence 67899999999999999999999999999865 1122 44443312111 22211 146899999876655
Q ss_pred HHhcC
Q 046660 100 IAEGS 104 (474)
Q Consensus 100 l~~~~ 104 (474)
-..+|
T Consensus 221 ~LA~G 225 (263)
T COG0351 221 NLAKG 225 (263)
T ss_pred HHHcC
Confidence 44444
No 71
>PF14658 EF-hand_9: EF-hand domain
Probab=22.39 E-value=57 Score=24.10 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=14.0
Q ss_pred HHHHHHhhhhcCCCCC
Q 046660 439 FDRLVHVKTTVDPHNF 454 (474)
Q Consensus 439 ~~RL~~IK~kyDP~~v 454 (474)
=.+|+.+.+.+||++-
T Consensus 34 e~~Lq~l~~elDP~g~ 49 (66)
T PF14658_consen 34 ESELQDLINELDPEGR 49 (66)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 3499999999999985
No 72
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.29 E-value=1.4e+02 Score=24.40 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=25.5
Q ss_pred EcCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 046660 23 TPLHVSHVQAAIKCSQKHGLQIRIRSGGHD 52 (474)
Q Consensus 23 ~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~ 52 (474)
......++.++++.|+++|+++....+.++
T Consensus 56 ~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 56 NSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 345678999999999999999988888765
No 73
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.68 E-value=88 Score=30.65 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=24.1
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEE--cCCCC
Q 046660 24 PLHVSHVQAAIKCSQKHGLQIRIR--SGGHD 52 (474)
Q Consensus 24 p~~~~dv~~~v~~a~~~~~~~~v~--~gGh~ 52 (474)
+=|.+||++++++|+++|+.+.+- .=||.
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 468999999999999999998764 34775
No 74
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=21.33 E-value=1.9e+02 Score=24.04 Aligned_cols=32 Identities=3% Similarity=0.065 Sum_probs=28.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEEE
Q 046660 16 PKPQVIITPLHVSHVQAAIKCSQKHGLQIRIR 47 (474)
Q Consensus 16 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~v~ 47 (474)
.....|+...+++|+.++-+-|++.+++..++
T Consensus 54 g~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 54 NMHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 37899999999999999999999999886663
No 75
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.30 E-value=92 Score=30.72 Aligned_cols=28 Identities=11% Similarity=0.355 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE--cCCCC
Q 046660 25 LHVSHVQAAIKCSQKHGLQIRIR--SGGHD 52 (474)
Q Consensus 25 ~~~~dv~~~v~~a~~~~~~~~v~--~gGh~ 52 (474)
=|.+|++++|++|+++|+.+.+- .=||+
T Consensus 65 yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 58899999999999999988643 44776
No 76
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=21.22 E-value=46 Score=20.06 Aligned_cols=12 Identities=25% Similarity=0.482 Sum_probs=9.8
Q ss_pred ccHHHHHHhhhh
Q 046660 437 NNFDRLVHVKTT 448 (474)
Q Consensus 437 ~n~~RL~~IK~k 448 (474)
+-|+||.+||.-
T Consensus 11 eFY~rlk~Ike~ 22 (28)
T PF12108_consen 11 EFYERLKEIKEY 22 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 569999999963
No 77
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=21.18 E-value=7.2e+02 Score=26.87 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCccCCCCcEEEEEcCC--C-Cc--eEEcCCC---CEEEEcCCCc----HH
Q 046660 27 VSHVQAAIKCSQKHGLQIRIRSGGHDFEGLSYVSDHVPFVIIDLIK--L-SE--INVDAEE---KTAWVQAGAT----LG 94 (474)
Q Consensus 27 ~~dv~~~v~~a~~~~~~~~v~~gGh~~~~~~~~~~~~~~~~idl~~--~-~~--i~~d~~~---~~~~v~~G~~----~~ 94 (474)
.++|.+.++.+-+++-++....+-.+........+ |+||-|. | +. --.++++ .+.-|=|--. ..
T Consensus 312 ~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvPsD----VIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~vYq 387 (741)
T TIGR00178 312 QEEIEADLQAVYAQRPELAMVNSDKGITNLHVPSD----VIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRCYAGVYQ 387 (741)
T ss_pred HHHHHHHHHHHHhhCCCEEEeccCCCccccCCCcC----eEEecCcHHHHhccCCccCCCCCcccceeecCCccchHHHH
Confidence 46799999999999999999998877777666665 8888652 2 11 1123332 1333333322 34
Q ss_pred HHHHHHHhcCCceeecCCCCCcccccccccCCCCCCcccccccc-------ccceeEEEEEccCCcEEe-ccCCCchhhh
Q 046660 95 QLYYRIAEGSKNLGFPAGSCHTVGVGGHFSGGGYGFMMRKFGLA-------ADHVVDAHLVDAEGRLLD-RKSMGEDLFW 166 (474)
Q Consensus 95 ~~~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~-------~d~v~~~~vv~~~G~~~~-~~~~~~dl~~ 166 (474)
++++.+.++|.-=+..-|+.+.||+ .. --.-.||.. .|- -++||..+|+++- -+.+..|+|.
T Consensus 388 ~~I~~ck~nGafDp~TmGsV~NVGL---MA-----qKAEEYGSHdkTFei~~~G--~v~Vvd~~G~vl~eh~Ve~GDIwR 457 (741)
T TIGR00178 388 VVIEDCKQNGAFDPTTMGTVPNVGL---MA-----QKAEEYGSHDKTFQIPADG--VVRVVDSSGEVLLEQSVEAGDIWR 457 (741)
T ss_pred HHHHHHHhcCCCCcccccCCcchhH---hH-----HHHHHhcCCCcceecCCCc--eEEEEeCCCCEEEEeeccCCcchh
Confidence 5666777776311122466666653 11 122345543 222 3678899999984 3445679998
Q ss_pred hhc
Q 046660 167 AIR 169 (474)
Q Consensus 167 a~r 169 (474)
++.
T Consensus 458 mcq 460 (741)
T TIGR00178 458 MCQ 460 (741)
T ss_pred hhh
Confidence 876
No 78
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=20.69 E-value=1.7e+02 Score=26.18 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=32.2
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 046660 20 VIITPLHVSHVQAAIKCSQKHGLQIRIRSGGHDFEG 55 (474)
Q Consensus 20 ~vv~p~~~~dv~~~v~~a~~~~~~~~v~~gGh~~~~ 55 (474)
.++.|-++++|.++++..++.|+.-.+.++=||+..
T Consensus 126 ~~i~~ld~~~v~~~~~~l~~~gv~avAV~~~fS~~n 161 (176)
T PF05378_consen 126 EVIEPLDEDEVREALRELKDKGVEAVAVSLLFSYRN 161 (176)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCEEEEECccCCCC
Confidence 367899999999999999999999999999998753
No 79
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=20.59 E-value=80 Score=31.39 Aligned_cols=29 Identities=14% Similarity=0.383 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHHHHHcCCcEE--EEcCCCC
Q 046660 24 PLHVSHVQAAIKCSQKHGLQIR--IRSGGHD 52 (474)
Q Consensus 24 p~~~~dv~~~v~~a~~~~~~~~--v~~gGh~ 52 (474)
.=|.+||+++|++|+++|+.|. |-.=||.
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~ 99 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHA 99 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHH
Confidence 4578999999999999999985 4567887
Done!