BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046665
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 84 CPNLKTHYQLSKKAEM-EVNAIVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKST 142
CPN K H Q +KK ++ + I+ +H KR S+ W + + F R
Sbjct: 234 CPNCKKHQQATKKFDLWSLPKILVVHLKR----FSY----NRYWRDKLDTVVEFPIRGLN 285
Query: 143 LKEILGSLS--NHNFNMIGV---YGMGGIG 167
+ E + +LS + +++I V YG G+G
Sbjct: 286 MSEFVCNLSARPYVYDLIAVSNHYGAMGVG 315
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 21 HPFTYYCTYKTNFEKLKNDVDKLKNARDSHIEEWLISVDEVISEVRKL 68
H F Y + ++K D+D L + D I EWL S +E + V ++
Sbjct: 1193 HAFYSYYVNLISTGQVKADIDLLTSGADFDIPEWLASWEEATTGVYRM 1240
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVI 189
NF ++ V G G GK LV++++G G KV+
Sbjct: 55 NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVL 90
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 160 VYGMGGIGKTMLVKEVAGQAKG 181
+YG G GKTMLVK VA K
Sbjct: 211 LYGPPGTGKTMLVKAVANSTKA 232
>pdb|1JMK|C Chain C, Structural Basis For The Cyclization Of The Lipopeptide
Antibiotic Surfactin By The Thioesterase Domain Srfte
pdb|1JMK|O Chain O, Structural Basis For The Cyclization Of The Lipopeptide
Antibiotic Surfactin By The Thioesterase Domain Srfte
Length = 230
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 21 HPFTYYCTYKTNFEKLKNDVDKLKNARDSHIEEWLISVDEVISEVRKL 68
H F Y + ++K D+D L + D I EWL S +E + ++
Sbjct: 152 HAFYSYYVNLISTGQVKADIDLLTSGADFDIPEWLASWEEATTGAYRM 199
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 43 LKNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVN 102
LKNA I E D+V++ K + +E++ F+ L P+L+ Q S A E++
Sbjct: 495 LKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEA-LQQSASALAELD 553
Query: 103 AIVGLHEKRKFDSVSFRTIPEEIWLKSTEG 132
+V L E+ + + T ++ ++ TEG
Sbjct: 554 VLVNLAERAYTLNYTCPTFIDKPGIRITEG 583
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 43 LKNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVN 102
LKNA I E D+V++ K + +E++ F+ L P+L+ Q S A E++
Sbjct: 495 LKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEA-LQQSASALAELD 553
Query: 103 AIVGLHEKRKFDSVSFRTIPEEIWLKSTEG 132
+V L E+ + + T ++ ++ TEG
Sbjct: 554 VLVNLAERAYTLNYTCPTFIDKPGIRITEG 583
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 43 LKNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVN 102
LKNA I E D+V++ K + +E++ F+ L P+L+ Q S A E++
Sbjct: 495 LKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEA-LQQSASALAELD 553
Query: 103 AIVGLHEKRKFDSVSFRTIPEEIWLKSTEG 132
+V L E+ + + T ++ ++ TEG
Sbjct: 554 VLVNLAERAYTLNYTCPTFIDKPGIRITEG 583
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 43 LKNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVN 102
LKNA I E D+V++ K + +E++ F+ L P+L+ Q S A E++
Sbjct: 495 LKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEA-LQQSASALAELD 553
Query: 103 AIVGLHEKRKFDSVSFRTIPEEIWLKSTEG 132
+V L E+ + + T ++ ++ TEG
Sbjct: 554 VLVNLAERAYTLNYTCPTFIDKPGIRITEG 583
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
Length = 800
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 43 LKNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVN 102
LKNA I E D+V++ K + +E++ F+ L P+L+ Q S A E++
Sbjct: 495 LKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEA-LQQSASALAELD 553
Query: 103 AIVGLHEKRKFDSVSFRTIPEEIWLKSTEG 132
+V L E+ + + T ++ ++ TEG
Sbjct: 554 VLVNLAERAYTLNYTCPTFIDKPGIRITEG 583
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
Length = 800
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 43 LKNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVN 102
LKNA I E D+V++ K + +E++ F+ L P+L+ Q S A E++
Sbjct: 495 LKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEA-LQQSASALAELD 553
Query: 103 AIVGLHEKRKFDSVSFRTIPEEIWLKSTEG 132
+V L E+ + + T ++ ++ TEG
Sbjct: 554 VLVNLAERAYTLNYTCPTFIDKPGIRITEG 583
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
Length = 799
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 43 LKNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVN 102
LKNA I E D+V++ K + +E++ F+ L P+L+ Q S A E++
Sbjct: 494 LKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEA-LQQSASALAELD 552
Query: 103 AIVGLHEKRKFDSVSFRTIPEEIWLKSTEG 132
+V L E+ + + T ++ ++ TEG
Sbjct: 553 VLVNLAERAYTLNYTCPTFIDKPGIRITEG 582
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 474
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 112 KFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMI-----GVYGMGGI 166
KF S +T+P+E+ K E I ES+K +L ++ F + G+ + +
Sbjct: 173 KFLSTKLKTLPDEVLTKEVEELILTESKK-----VLEDVTGEEFVLFMKILSGLKSLQTV 227
Query: 167 -GKTMLVKEVAGQAKGNNLF 185
G+ LV+ VA QA F
Sbjct: 228 SGRQQLVELVAEQADLEQTF 247
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 138 SRKSTLKEILGSLSNHNFN--MIGVYGMGGIGKTMLVKEVAGQ 178
+ ++ L E+LG+L + N I V G GG+GK+ V + G+
Sbjct: 20 ATQTKLLELLGNLKQEDVNSLTILVXGKGGVGKSSTVNSIIGE 62
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 160 VYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195
+YG G GKT+L K VA Q F +++ +++ Q
Sbjct: 221 LYGAPGTGKTLLAKAVANQTSAT--FLRIVGSELIQ 254
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 145 EILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180
E LGSL +N I +YG G GKT L++ +AK
Sbjct: 31 ENLGSL----YNPIFIYGSVGTGKTHLLQAAGNEAK 62
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 507
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 112 KFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMI-----GVYGMGGI 166
KF S +T+P+E+ K E I ES+K +L ++ F + G+ + +
Sbjct: 156 KFLSTKLKTLPDEVLTKEVEELILTESKK-----VLEDVTGEEFVLFMKILSGLKSLQTV 210
Query: 167 -GKTMLVKEVAGQAKGNNLF 185
G+ LV+ VA QA F
Sbjct: 211 SGRQQLVELVAEQADLEQTF 230
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 145 EILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180
E LGSL +N I +YG G GKT L++ +AK
Sbjct: 31 ENLGSL----YNPIFIYGSVGTGKTHLLQAAGNEAK 62
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 145 EILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180
E LGSL +N I +YG G GKT L++ +AK
Sbjct: 30 ENLGSL----YNPIFIYGSVGTGKTHLLQAAGNEAK 61
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 138 SRKSTLKEILGSLSNHNFN--MIGVYGMGGIGKTMLVKEVAGQ 178
+ ++ L E+LG+L + N I V G GG+GK+ V + G+
Sbjct: 20 ATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 157 MIGVYGMGGIGKTMLVKEVAG 177
+IG+ G GIGKT VK +AG
Sbjct: 314 VIGIVGPNGIGKTTFVKXLAG 334
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 9/46 (19%)
Query: 143 LKEILGSLSNHN-FNMIG--------VYGMGGIGKTMLVKEVAGQA 179
LKE++ L + + FN IG + G G GKT+L + VAG+A
Sbjct: 28 LKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 145 EILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178
++ G + N ++GV G G+GKT ++K +AG+
Sbjct: 15 KLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGE 48
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 157 MIGVYGMGGIGKTMLVKEVAG 177
+IG+ G GIGKT VK +AG
Sbjct: 384 VIGIVGPNGIGKTTFVKMLAG 404
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 157 MIGVYGMGGIGKTMLVKEVAGQ-----AKGNNLFEKVISA 191
++G+ G G GKT VK +AGQ + N+ ++ VI A
Sbjct: 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRA 158
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 157 MIGVYGMGGIGKTMLVKEVAG 177
+IG+ G GIGKT VK +AG
Sbjct: 370 VIGIVGPNGIGKTTFVKMLAG 390
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 110 KRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMI-GVYGMGGIGK 168
K F+++S +PE++ E +H R +L L M+ G+ G G GK
Sbjct: 64 KCPFNAISIVNLPEQL----DEDCVH---RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGK 116
Query: 169 TMLVKEVAGQ-----AKGNNLFEKVISA 191
T VK +AGQ + N+ ++ VI A
Sbjct: 117 TTAVKILAGQLIPNLCEDNDSWDNVIRA 144
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 154 NFNMIGVYGMGGIGKTMLVKEVAG 177
F ++ V G G GK LVK+++G
Sbjct: 25 QFELLKVLGQGSFGKVFLVKKISG 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,878,851
Number of Sequences: 62578
Number of extensions: 231158
Number of successful extensions: 825
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 50
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)