Query 046665
Match_columns 204
No_of_seqs 142 out of 1614
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:15:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 1.1E-26 2.4E-31 210.2 16.2 195 5-204 6-229 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.5 1.2E-14 2.6E-19 117.4 7.0 65 139-203 1-67 (287)
3 PLN03210 Resistant to P. syrin 99.1 1.8E-10 3.9E-15 109.0 7.5 59 132-192 182-242 (1153)
4 cd01128 rho_factor Transcripti 98.9 3.2E-09 7E-14 84.1 5.3 57 146-203 6-65 (249)
5 PRK09376 rho transcription ter 98.8 7.8E-09 1.7E-13 86.0 4.7 58 145-203 158-218 (416)
6 PRK11331 5-methylcytosine-spec 98.4 1.8E-06 4E-11 73.4 8.9 67 134-202 175-241 (459)
7 PF13191 AAA_16: AAA ATPase do 98.4 5.6E-07 1.2E-11 67.7 5.4 51 135-185 1-54 (185)
8 TIGR00767 rho transcription te 98.4 5.3E-07 1.1E-11 75.5 5.6 50 153-203 166-217 (415)
9 PF01637 Arch_ATPase: Archaeal 98.3 7.4E-07 1.6E-11 69.2 4.6 45 136-180 1-45 (234)
10 cd00009 AAA The AAA+ (ATPases 98.2 6.9E-06 1.5E-10 58.6 7.2 59 138-198 2-60 (151)
11 PRK00411 cdc6 cell division co 98.1 1.2E-05 2.6E-10 67.9 8.7 64 133-196 29-96 (394)
12 TIGR02928 orc1/cdc6 family rep 98.1 1.5E-05 3.3E-10 66.6 8.1 48 133-180 14-65 (365)
13 PF13207 AAA_17: AAA domain; P 98.0 8.3E-06 1.8E-10 57.2 3.5 24 157-180 1-24 (121)
14 TIGR00635 ruvB Holliday juncti 97.9 2.1E-05 4.5E-10 64.2 5.3 48 134-181 4-56 (305)
15 PTZ00202 tuzin; Provisional 97.8 4.9E-05 1.1E-09 64.6 6.5 49 132-180 260-311 (550)
16 PF05496 RuvB_N: Holliday junc 97.8 3.2E-05 7E-10 60.0 4.8 49 134-182 24-77 (233)
17 TIGR03420 DnaA_homol_Hda DnaA 97.8 6.5E-05 1.4E-09 58.5 5.9 56 138-195 21-76 (226)
18 PRK06696 uridine kinase; Valid 97.7 6.6E-05 1.4E-09 58.7 5.7 42 139-180 3-47 (223)
19 smart00763 AAA_PrkA PrkA AAA d 97.7 6.8E-05 1.5E-09 62.2 5.6 47 135-181 52-104 (361)
20 TIGR03015 pepcterm_ATPase puta 97.7 0.00019 4E-09 57.4 7.4 29 152-180 40-68 (269)
21 KOG2028 ATPase related to the 97.7 8.5E-05 1.8E-09 61.4 5.4 45 146-194 153-197 (554)
22 PRK00080 ruvB Holliday junctio 97.7 8.1E-05 1.8E-09 61.5 5.3 48 134-181 25-77 (328)
23 PRK13342 recombination factor 97.7 5.5E-05 1.2E-09 64.5 4.4 47 134-180 12-61 (413)
24 PRK06547 hypothetical protein; 97.6 0.00011 2.4E-09 55.1 5.3 37 145-181 5-41 (172)
25 PF13173 AAA_14: AAA domain 97.6 9.7E-05 2.1E-09 52.5 4.7 38 155-195 2-39 (128)
26 TIGR02903 spore_lon_C ATP-depe 97.6 0.00013 2.7E-09 65.3 5.7 61 134-194 154-217 (615)
27 PF13238 AAA_18: AAA domain; P 97.5 9E-05 1.9E-09 52.1 3.3 21 158-178 1-21 (129)
28 PF13401 AAA_22: AAA domain; P 97.5 8.3E-05 1.8E-09 52.7 3.0 49 154-202 3-54 (131)
29 PRK04195 replication factor C 97.5 0.00017 3.6E-09 62.8 5.4 47 134-180 14-64 (482)
30 PRK12402 replication factor C 97.5 0.00018 3.9E-09 59.4 5.1 47 134-180 15-61 (337)
31 PRK05564 DNA polymerase III su 97.5 0.00037 8.1E-09 57.2 6.8 70 134-203 4-79 (313)
32 PRK00440 rfc replication facto 97.4 0.00051 1.1E-08 56.2 7.2 47 134-180 17-63 (319)
33 PRK07667 uridine kinase; Provi 97.4 0.00021 4.5E-09 54.6 4.6 37 144-180 4-42 (193)
34 KOG2004 Mitochondrial ATP-depe 97.4 0.0056 1.2E-07 54.9 13.5 48 133-180 410-463 (906)
35 PLN03025 replication factor C 97.4 0.00046 9.9E-09 56.9 6.6 46 134-179 13-58 (319)
36 CHL00095 clpC Clp protease ATP 97.4 0.00024 5.3E-09 65.7 5.4 46 134-179 179-224 (821)
37 PRK15455 PrkA family serine pr 97.4 0.00025 5.5E-09 62.2 5.1 46 135-180 77-128 (644)
38 PRK09270 nucleoside triphospha 97.4 0.00038 8.3E-09 54.6 5.6 28 153-180 31-58 (229)
39 PF13671 AAA_33: AAA domain; P 97.4 0.00019 4.1E-09 51.7 3.5 22 157-178 1-22 (143)
40 cd02019 NK Nucleoside/nucleoti 97.4 0.0002 4.4E-09 45.2 3.1 23 157-179 1-23 (69)
41 PF03205 MobB: Molybdopterin g 97.3 0.00045 9.7E-09 50.1 5.0 39 156-195 1-39 (140)
42 KOG1532 GTPase XAB1, interacts 97.3 0.00028 6.1E-09 56.2 4.2 29 154-182 18-46 (366)
43 PRK14963 DNA polymerase III su 97.3 0.00033 7E-09 61.2 4.7 48 134-181 14-62 (504)
44 COG2255 RuvB Holliday junction 97.3 0.00049 1.1E-08 55.1 5.3 49 134-182 26-79 (332)
45 TIGR03345 VI_ClpV1 type VI sec 97.3 0.00038 8.3E-09 64.4 5.4 46 134-179 187-232 (852)
46 COG0466 Lon ATP-dependent Lon 97.3 0.00046 9.9E-09 61.5 5.3 48 133-180 322-375 (782)
47 TIGR00554 panK_bact pantothena 97.3 0.00041 8.9E-09 56.3 4.7 26 153-178 60-85 (290)
48 TIGR02639 ClpA ATP-dependent C 97.3 0.00046 1E-08 63.1 5.5 46 134-179 182-227 (731)
49 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0006 1.3E-08 53.4 5.5 49 154-202 18-70 (235)
50 PHA00729 NTP-binding motif con 97.2 0.00049 1.1E-08 53.7 4.7 36 144-179 6-41 (226)
51 PRK13341 recombination factor 97.2 0.00048 1E-08 62.6 5.3 47 134-180 28-77 (725)
52 PHA02544 44 clamp loader, smal 97.2 0.00053 1.2E-08 56.2 5.1 46 134-179 21-67 (316)
53 COG2256 MGS1 ATPase related to 97.2 0.00038 8.1E-09 58.2 4.0 33 148-180 41-73 (436)
54 smart00382 AAA ATPases associa 97.2 0.00035 7.6E-09 49.1 3.3 28 155-182 2-29 (148)
55 TIGR01242 26Sp45 26S proteasom 97.2 0.00054 1.2E-08 57.5 4.8 48 133-180 121-181 (364)
56 TIGR00073 hypB hydrogenase acc 97.2 0.00047 1E-08 53.2 3.9 32 149-180 16-47 (207)
57 PRK03992 proteasome-activating 97.2 0.00062 1.3E-08 57.7 4.9 48 133-180 130-190 (389)
58 PRK10865 protein disaggregatio 97.2 0.00058 1.3E-08 63.4 5.0 46 134-179 178-223 (857)
59 PF04665 Pox_A32: Poxvirus A32 97.2 0.0007 1.5E-08 53.4 4.8 40 155-196 13-52 (241)
60 PF08477 Miro: Miro-like prote 97.2 0.00036 7.8E-09 48.5 2.9 24 158-181 2-25 (119)
61 TIGR02881 spore_V_K stage V sp 97.1 0.0011 2.4E-08 53.0 6.0 45 135-179 7-66 (261)
62 PF00004 AAA: ATPase family as 97.1 0.00051 1.1E-08 48.4 3.4 23 158-180 1-23 (132)
63 PRK10536 hypothetical protein; 97.1 0.0039 8.5E-08 49.6 8.6 43 134-178 55-97 (262)
64 KOG2543 Origin recognition com 97.1 0.0014 3.1E-08 54.5 6.1 64 133-201 5-71 (438)
65 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0018 3.8E-08 46.5 5.6 29 154-182 21-49 (133)
66 PRK14957 DNA polymerase III su 97.0 0.0022 4.7E-08 56.5 7.3 46 134-179 16-62 (546)
67 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0011 2.3E-08 61.7 5.5 46 134-179 173-218 (852)
68 PRK03846 adenylylsulfate kinas 97.0 0.00074 1.6E-08 51.7 3.8 27 153-179 22-48 (198)
69 PRK14962 DNA polymerase III su 97.0 0.0011 2.3E-08 57.5 5.2 47 134-180 14-61 (472)
70 PRK08084 DNA replication initi 97.0 0.0015 3.2E-08 51.5 5.6 51 142-194 32-82 (235)
71 PRK10463 hydrogenase nickel in 97.0 0.0015 3.2E-08 52.9 5.6 36 146-181 95-130 (290)
72 PRK14961 DNA polymerase III su 97.0 0.0013 2.9E-08 55.1 5.5 47 134-180 16-63 (363)
73 COG1419 FlhF Flagellar GTP-bin 97.0 0.0013 2.7E-08 55.3 5.1 40 140-179 184-228 (407)
74 PF00910 RNA_helicase: RNA hel 97.0 0.00064 1.4E-08 46.8 2.8 23 158-180 1-23 (107)
75 PF05659 RPW8: Arabidopsis bro 97.0 0.017 3.7E-07 42.2 10.3 98 5-109 8-115 (147)
76 PRK09361 radB DNA repair and r 97.0 0.0018 3.9E-08 50.5 5.5 45 155-202 23-67 (225)
77 cd00071 GMPK Guanosine monopho 96.9 0.00075 1.6E-08 48.7 2.9 22 157-178 1-22 (137)
78 PRK08727 hypothetical protein; 96.9 0.0043 9.4E-08 48.8 7.4 57 137-195 23-79 (233)
79 PF00005 ABC_tran: ABC transpo 96.9 0.00086 1.9E-08 47.9 3.1 25 155-179 11-35 (137)
80 PRK08903 DnaA regulatory inact 96.9 0.002 4.4E-08 50.3 5.4 38 142-179 28-66 (227)
81 PRK12323 DNA polymerase III su 96.9 0.003 6.5E-08 56.5 6.7 47 134-180 16-63 (700)
82 COG0467 RAD55 RecA-superfamily 96.9 0.0017 3.6E-08 51.9 4.8 42 154-197 22-63 (260)
83 PRK06893 DNA replication initi 96.9 0.0013 2.9E-08 51.5 4.1 39 154-194 38-76 (229)
84 CHL00181 cbbX CbbX; Provisiona 96.8 0.0033 7.1E-08 51.1 6.3 23 157-179 61-83 (287)
85 PRK14956 DNA polymerase III su 96.8 0.0018 3.8E-08 56.0 4.9 47 134-180 18-65 (484)
86 PRK11034 clpA ATP-dependent Cl 96.8 0.0016 3.5E-08 59.6 4.9 46 134-179 186-231 (758)
87 CHL00081 chlI Mg-protoporyphyr 96.8 0.0019 4.1E-08 53.8 4.9 46 133-178 16-61 (350)
88 COG1124 DppF ABC-type dipeptid 96.8 0.00098 2.1E-08 52.2 3.0 24 154-177 32-55 (252)
89 PF03193 DUF258: Protein of un 96.8 0.0018 3.8E-08 48.0 4.2 35 142-179 25-59 (161)
90 PRK06851 hypothetical protein; 96.8 0.069 1.5E-06 44.9 14.0 54 138-196 201-254 (367)
91 cd00820 PEPCK_HprK Phosphoenol 96.8 0.0011 2.5E-08 45.6 2.9 22 155-176 15-36 (107)
92 PRK14949 DNA polymerase III su 96.8 0.0039 8.4E-08 57.6 7.0 47 134-180 16-63 (944)
93 PRK14955 DNA polymerase III su 96.8 0.0022 4.7E-08 54.5 5.1 47 134-180 16-63 (397)
94 PRK14951 DNA polymerase III su 96.8 0.0033 7.2E-08 56.2 6.4 45 134-178 16-61 (618)
95 cd03225 ABC_cobalt_CbiO_domain 96.8 0.0011 2.5E-08 51.0 3.1 25 154-178 26-50 (211)
96 PRK14738 gmk guanylate kinase; 96.8 0.0013 2.9E-08 50.7 3.5 25 154-178 12-36 (206)
97 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0011 2.5E-08 51.3 3.1 25 154-178 29-53 (218)
98 COG1120 FepC ABC-type cobalami 96.8 0.0011 2.4E-08 52.8 3.0 26 154-179 27-52 (258)
99 PRK09087 hypothetical protein; 96.8 0.004 8.7E-08 48.8 6.2 26 154-179 43-68 (226)
100 TIGR02640 gas_vesic_GvpN gas v 96.8 0.0071 1.5E-07 48.4 7.7 38 140-179 8-45 (262)
101 cd01393 recA_like RecA is a b 96.8 0.0032 6.9E-08 49.0 5.5 49 154-202 18-70 (226)
102 PF02562 PhoH: PhoH-like prote 96.8 0.0023 5.1E-08 49.3 4.6 53 138-192 4-56 (205)
103 TIGR03499 FlhF flagellar biosy 96.8 0.0018 4E-08 52.4 4.2 27 154-180 193-219 (282)
104 COG1126 GlnQ ABC-type polar am 96.8 0.0013 2.8E-08 50.8 3.1 35 154-191 27-61 (240)
105 TIGR01166 cbiO cobalt transpor 96.8 0.0013 2.7E-08 50.0 3.1 25 154-178 17-41 (190)
106 TIGR00960 3a0501s02 Type II (G 96.8 0.0012 2.7E-08 51.0 3.1 25 154-178 28-52 (216)
107 TIGR02030 BchI-ChlI magnesium 96.7 0.0031 6.8E-08 52.3 5.5 45 134-178 4-48 (337)
108 PRK14960 DNA polymerase III su 96.7 0.0049 1.1E-07 55.2 7.0 46 134-179 15-61 (702)
109 PRK07003 DNA polymerase III su 96.7 0.005 1.1E-07 55.9 7.1 46 134-179 16-62 (830)
110 PRK14958 DNA polymerase III su 96.7 0.0053 1.2E-07 53.8 7.2 46 134-179 16-62 (509)
111 PF01926 MMR_HSR1: 50S ribosom 96.7 0.0013 2.9E-08 45.6 2.9 21 158-178 2-22 (116)
112 COG1116 TauB ABC-type nitrate/ 96.7 0.0013 2.8E-08 51.7 3.0 24 154-177 28-51 (248)
113 cd03229 ABC_Class3 This class 96.7 0.0015 3.2E-08 49.2 3.1 25 154-178 25-49 (178)
114 PLN02796 D-glycerate 3-kinase 96.7 0.0014 3.1E-08 54.2 3.3 27 154-180 99-125 (347)
115 cd03238 ABC_UvrA The excision 96.7 0.0014 3.1E-08 49.3 3.0 25 154-178 20-44 (176)
116 PRK05439 pantothenate kinase; 96.7 0.0033 7.1E-08 51.5 5.3 27 153-179 84-110 (311)
117 cd03261 ABC_Org_Solvent_Resist 96.7 0.0014 3.1E-08 51.4 3.1 25 154-178 25-49 (235)
118 cd03293 ABC_NrtD_SsuB_transpor 96.7 0.0015 3.2E-08 50.8 3.1 25 154-178 29-53 (220)
119 PRK10787 DNA-binding ATP-depen 96.7 0.0072 1.6E-07 55.7 8.0 47 134-180 322-374 (784)
120 PF07728 AAA_5: AAA domain (dy 96.7 0.0017 3.7E-08 46.6 3.2 22 158-179 2-23 (139)
121 cd01394 radB RadB. The archaea 96.7 0.0035 7.6E-08 48.6 5.2 43 154-198 18-60 (218)
122 PF03215 Rad17: Rad17 cell cyc 96.7 0.0036 7.8E-08 54.9 5.7 54 135-192 20-78 (519)
123 TIGR02673 FtsE cell division A 96.7 0.0015 3.3E-08 50.5 3.1 25 154-178 27-51 (214)
124 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0015 3.3E-08 49.2 3.0 26 154-179 24-49 (177)
125 PTZ00112 origin recognition co 96.7 0.0038 8.2E-08 57.6 5.9 48 133-180 754-806 (1164)
126 PRK11889 flhF flagellar biosyn 96.7 0.0033 7.2E-08 53.1 5.2 27 154-180 240-266 (436)
127 cd03259 ABC_Carb_Solutes_like 96.7 0.0016 3.4E-08 50.4 3.1 25 154-178 25-49 (213)
128 cd03263 ABC_subfamily_A The AB 96.7 0.0016 3.4E-08 50.6 3.1 25 154-178 27-51 (220)
129 TIGR02315 ABC_phnC phosphonate 96.7 0.0016 3.4E-08 51.4 3.1 25 154-178 27-51 (243)
130 PF05673 DUF815: Protein of un 96.7 0.004 8.7E-08 49.1 5.3 52 130-181 23-78 (249)
131 PRK14969 DNA polymerase III su 96.7 0.0067 1.5E-07 53.4 7.3 46 134-179 16-62 (527)
132 cd03269 ABC_putative_ATPase Th 96.7 0.0016 3.6E-08 50.1 3.2 25 154-178 25-49 (210)
133 PRK10584 putative ABC transpor 96.7 0.0017 3.6E-08 50.8 3.2 25 154-178 35-59 (228)
134 cd04155 Arl3 Arl3 subfamily. 96.6 0.0014 3.1E-08 48.4 2.7 25 154-178 13-37 (173)
135 cd03235 ABC_Metallic_Cations A 96.6 0.0016 3.5E-08 50.3 3.0 25 154-178 24-48 (213)
136 cd03256 ABC_PhnC_transporter A 96.6 0.0017 3.6E-08 51.1 3.1 25 154-178 26-50 (241)
137 PRK05896 DNA polymerase III su 96.6 0.0032 7E-08 55.9 5.1 46 134-179 16-62 (605)
138 COG1136 SalX ABC-type antimicr 96.6 0.0018 3.9E-08 50.5 3.1 25 154-178 30-54 (226)
139 cd03226 ABC_cobalt_CbiO_domain 96.6 0.0017 3.8E-08 49.8 3.1 25 154-178 25-49 (205)
140 COG1474 CDC6 Cdc6-related prot 96.6 0.0081 1.7E-07 50.5 7.3 49 134-182 17-69 (366)
141 PRK08099 bifunctional DNA-bind 96.6 0.002 4.4E-08 54.7 3.7 28 153-180 217-244 (399)
142 TIGR02211 LolD_lipo_ex lipopro 96.6 0.0018 3.9E-08 50.3 3.2 25 154-178 30-54 (221)
143 cd03296 ABC_CysA_sulfate_impor 96.6 0.0017 3.8E-08 51.1 3.1 25 154-178 27-51 (239)
144 TIGR03864 PQQ_ABC_ATP ABC tran 96.6 0.0018 3.9E-08 50.9 3.2 25 154-178 26-50 (236)
145 cd03265 ABC_DrrA DrrA is the A 96.6 0.0018 3.9E-08 50.3 3.1 25 154-178 25-49 (220)
146 cd03292 ABC_FtsE_transporter F 96.6 0.0018 4E-08 49.9 3.1 25 154-178 26-50 (214)
147 cd03264 ABC_drug_resistance_li 96.6 0.0016 3.5E-08 50.2 2.9 22 157-178 27-48 (211)
148 PRK15177 Vi polysaccharide exp 96.6 0.0018 3.9E-08 50.2 3.1 24 155-178 13-36 (213)
149 PRK13541 cytochrome c biogenes 96.6 0.0019 4E-08 49.3 3.1 26 154-179 25-50 (195)
150 cd03260 ABC_PstB_phosphate_tra 96.6 0.0019 4E-08 50.4 3.2 26 154-179 25-50 (227)
151 cd03297 ABC_ModC_molybdenum_tr 96.6 0.0019 4E-08 50.0 3.1 25 153-178 22-46 (214)
152 PRK06620 hypothetical protein; 96.6 0.0019 4.2E-08 50.2 3.1 25 156-180 45-69 (214)
153 PRK14964 DNA polymerase III su 96.6 0.0032 6.9E-08 54.8 4.7 44 134-177 13-57 (491)
154 PRK14970 DNA polymerase III su 96.6 0.0041 9E-08 52.2 5.3 46 134-179 17-63 (367)
155 PRK08691 DNA polymerase III su 96.6 0.0076 1.6E-07 54.3 7.1 45 134-178 16-61 (709)
156 PRK04301 radA DNA repair and r 96.6 0.0052 1.1E-07 50.6 5.7 50 154-203 101-154 (317)
157 TIGR02236 recomb_radA DNA repa 96.6 0.0055 1.2E-07 50.2 5.8 50 154-203 94-147 (310)
158 TIGR00763 lon ATP-dependent pr 96.6 0.0061 1.3E-07 56.2 6.6 47 134-180 320-372 (775)
159 PTZ00454 26S protease regulato 96.6 0.0037 8.1E-08 53.1 4.9 47 134-180 145-204 (398)
160 COG1703 ArgK Putative periplas 96.6 0.0064 1.4E-07 49.2 5.9 56 143-198 37-94 (323)
161 PRK11629 lolD lipoprotein tran 96.6 0.0021 4.5E-08 50.5 3.1 25 154-178 34-58 (233)
162 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0038 8.2E-08 50.2 4.6 44 154-198 68-111 (274)
163 cd03257 ABC_NikE_OppD_transpor 96.6 0.002 4.4E-08 50.2 3.1 25 154-178 30-54 (228)
164 TIGR02770 nickel_nikD nickel i 96.6 0.002 4.4E-08 50.4 3.1 26 154-179 11-36 (230)
165 PRK13538 cytochrome c biogenes 96.5 0.0021 4.6E-08 49.4 3.1 25 154-178 26-50 (204)
166 PF13604 AAA_30: AAA domain; P 96.5 0.0042 9.1E-08 47.5 4.7 40 143-182 6-45 (196)
167 PRK11248 tauB taurine transpor 96.5 0.0021 4.5E-08 51.3 3.1 25 154-178 26-50 (255)
168 cd03224 ABC_TM1139_LivF_branch 96.5 0.002 4.4E-08 50.0 3.0 25 154-178 25-49 (222)
169 PF02367 UPF0079: Uncharacteri 96.5 0.0038 8.2E-08 44.1 4.1 29 154-182 14-42 (123)
170 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.002 4.4E-08 42.5 2.6 24 157-180 1-24 (99)
171 PRK10247 putative ABC transpor 96.5 0.0022 4.7E-08 50.1 3.1 25 154-178 32-56 (225)
172 TIGR02397 dnaX_nterm DNA polym 96.5 0.0048 1E-07 51.3 5.4 46 134-179 14-60 (355)
173 TIGR00750 lao LAO/AO transport 96.5 0.0093 2E-07 48.7 7.0 37 144-180 21-59 (300)
174 PRK10416 signal recognition pa 96.5 0.0023 4.9E-08 52.8 3.3 27 154-180 113-139 (318)
175 TIGR01184 ntrCD nitrate transp 96.5 0.0022 4.7E-08 50.3 3.1 24 155-178 11-34 (230)
176 cd03237 ABC_RNaseL_inhibitor_d 96.5 0.0022 4.7E-08 50.9 3.1 25 155-179 25-49 (246)
177 PRK04841 transcriptional regul 96.5 0.0052 1.1E-07 57.3 6.1 52 135-196 15-67 (903)
178 cd03301 ABC_MalK_N The N-termi 96.5 0.0023 4.9E-08 49.4 3.1 25 154-178 25-49 (213)
179 TIGR03608 L_ocin_972_ABC putat 96.5 0.0023 5.1E-08 49.0 3.2 25 154-178 23-47 (206)
180 cd03258 ABC_MetN_methionine_tr 96.5 0.0023 5E-08 50.1 3.1 25 154-178 30-54 (233)
181 cd03219 ABC_Mj1267_LivG_branch 96.5 0.0021 4.5E-08 50.4 2.9 25 154-178 25-49 (236)
182 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.0022 4.9E-08 50.8 3.0 23 155-177 30-52 (254)
183 PLN02348 phosphoribulokinase 96.5 0.0029 6.2E-08 53.3 3.8 28 153-180 47-74 (395)
184 TIGR00602 rad24 checkpoint pro 96.5 0.0039 8.5E-08 55.9 4.8 47 134-180 84-135 (637)
185 PRK10646 ADP-binding protein; 96.5 0.0071 1.5E-07 44.4 5.4 28 155-182 28-55 (153)
186 cd03218 ABC_YhbG The ABC trans 96.5 0.0024 5.2E-08 50.0 3.1 25 154-178 25-49 (232)
187 PRK14722 flhF flagellar biosyn 96.5 0.0044 9.5E-08 52.1 4.8 27 154-180 136-162 (374)
188 PRK11124 artP arginine transpo 96.5 0.0024 5.3E-08 50.3 3.1 26 154-179 27-52 (242)
189 TIGR01978 sufC FeS assembly AT 96.5 0.0023 5.1E-08 50.3 3.0 25 154-178 25-49 (243)
190 TIGR00064 ftsY signal recognit 96.5 0.0073 1.6E-07 48.7 5.9 28 153-180 70-97 (272)
191 cd04153 Arl5_Arl8 Arl5/Arl8 su 96.5 0.0041 8.8E-08 46.4 4.1 35 144-178 4-38 (174)
192 TIGR02902 spore_lonB ATP-depen 96.5 0.0044 9.6E-08 54.6 5.0 45 134-178 65-109 (531)
193 cd00879 Sar1 Sar1 subfamily. 96.5 0.0021 4.6E-08 48.4 2.6 24 155-178 19-42 (190)
194 PRK10908 cell division protein 96.5 0.0026 5.6E-08 49.5 3.1 25 154-178 27-51 (222)
195 PRK12608 transcription termina 96.5 0.0089 1.9E-07 50.1 6.4 55 142-197 119-175 (380)
196 PRK07994 DNA polymerase III su 96.5 0.0084 1.8E-07 53.8 6.6 46 134-179 16-62 (647)
197 cd03262 ABC_HisP_GlnQ_permease 96.5 0.0026 5.7E-08 49.0 3.1 25 154-178 25-49 (213)
198 TIGR01189 ccmA heme ABC export 96.5 0.0027 5.8E-08 48.5 3.1 26 154-179 25-50 (198)
199 PRK13531 regulatory ATPase Rav 96.5 0.0066 1.4E-07 52.6 5.7 51 134-186 20-70 (498)
200 PLN02200 adenylate kinase fami 96.5 0.0035 7.5E-08 49.4 3.8 27 154-180 42-68 (234)
201 PRK14974 cell division protein 96.5 0.012 2.7E-07 48.8 7.2 27 154-180 139-165 (336)
202 cd03295 ABC_OpuCA_Osmoprotecti 96.5 0.0026 5.7E-08 50.1 3.2 25 154-178 26-50 (242)
203 cd03232 ABC_PDR_domain2 The pl 96.5 0.0027 5.8E-08 48.3 3.1 24 154-177 32-55 (192)
204 TIGR02880 cbbX_cfxQ probable R 96.5 0.01 2.2E-07 48.2 6.6 23 157-179 60-82 (284)
205 PF10662 PduV-EutP: Ethanolami 96.4 0.0027 5.9E-08 46.0 2.9 24 156-179 2-25 (143)
206 PRK13539 cytochrome c biogenes 96.4 0.0027 5.9E-08 48.9 3.2 26 154-179 27-52 (207)
207 cd03266 ABC_NatA_sodium_export 96.4 0.0027 5.8E-08 49.2 3.1 25 154-178 30-54 (218)
208 PRK06645 DNA polymerase III su 96.4 0.0049 1.1E-07 53.9 5.0 47 134-180 21-68 (507)
209 PF12061 DUF3542: Protein of u 96.4 0.014 3E-07 47.5 7.1 94 4-105 298-401 (402)
210 PLN02318 phosphoribulokinase/u 96.4 0.0028 6.1E-08 56.0 3.5 27 153-179 63-89 (656)
211 TIGR01241 FtsH_fam ATP-depende 96.4 0.0077 1.7E-07 52.7 6.3 48 133-180 54-113 (495)
212 PRK11247 ssuB aliphatic sulfon 96.4 0.0027 5.7E-08 50.8 3.1 25 154-178 37-61 (257)
213 PRK14242 phosphate transporter 96.4 0.0027 5.8E-08 50.4 3.2 25 154-178 31-55 (253)
214 TIGR00972 3a0107s01c2 phosphat 96.4 0.0026 5.6E-08 50.4 3.0 25 154-178 26-50 (247)
215 TIGR02324 CP_lyasePhnL phospho 96.4 0.0027 6E-08 49.4 3.1 26 154-179 33-58 (224)
216 PRK13540 cytochrome c biogenes 96.4 0.0029 6.2E-08 48.5 3.1 26 154-179 26-51 (200)
217 PRK14954 DNA polymerase III su 96.4 0.0044 9.6E-08 55.5 4.7 46 134-179 16-62 (620)
218 cd03268 ABC_BcrA_bacitracin_re 96.4 0.0029 6.2E-08 48.7 3.1 25 154-178 25-49 (208)
219 PRK09544 znuC high-affinity zi 96.4 0.0028 6E-08 50.5 3.1 25 154-178 29-53 (251)
220 cd03246 ABCC_Protease_Secretio 96.4 0.0031 6.6E-08 47.2 3.2 25 154-178 27-51 (173)
221 cd01130 VirB11-like_ATPase Typ 96.4 0.0059 1.3E-07 46.2 4.8 35 143-178 14-48 (186)
222 PRK14245 phosphate ABC transpo 96.4 0.0029 6.2E-08 50.2 3.1 24 154-177 28-51 (250)
223 cd03214 ABC_Iron-Siderophores_ 96.4 0.0031 6.7E-08 47.5 3.1 26 154-179 24-49 (180)
224 cd03223 ABCD_peroxisomal_ALDP 96.4 0.0031 6.7E-08 46.9 3.1 26 154-179 26-51 (166)
225 cd03278 ABC_SMC_barmotin Barmo 96.4 0.0028 6.1E-08 48.5 2.9 22 156-177 23-44 (197)
226 COG4608 AppF ABC-type oligopep 96.4 0.0027 5.9E-08 50.6 2.8 27 154-180 38-64 (268)
227 cd03267 ABC_NatA_like Similar 96.4 0.003 6.4E-08 49.7 3.1 25 154-178 46-70 (236)
228 PTZ00361 26 proteosome regulat 96.4 0.0059 1.3E-07 52.5 5.1 47 134-180 183-242 (438)
229 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.0032 6.9E-08 45.7 3.0 26 154-179 25-50 (144)
230 PLN02165 adenylate isopentenyl 96.4 0.0033 7.2E-08 51.9 3.4 30 150-179 38-67 (334)
231 TIGR00678 holB DNA polymerase 96.4 0.015 3.2E-07 44.0 6.9 36 145-180 3-39 (188)
232 PRK14241 phosphate transporter 96.4 0.003 6.5E-08 50.3 3.1 25 154-178 29-53 (258)
233 TIGR03689 pup_AAA proteasome A 96.4 0.0083 1.8E-07 52.5 6.0 47 134-180 182-241 (512)
234 TIGR01277 thiQ thiamine ABC tr 96.4 0.0031 6.7E-08 48.7 3.1 26 154-179 23-48 (213)
235 PRK14247 phosphate ABC transpo 96.4 0.003 6.6E-08 50.0 3.1 25 154-178 28-52 (250)
236 PRK10895 lipopolysaccharide AB 96.4 0.0029 6.4E-08 49.8 3.0 25 154-178 28-52 (241)
237 cd03216 ABC_Carb_Monos_I This 96.4 0.0033 7.1E-08 46.6 3.1 25 154-178 25-49 (163)
238 cd03233 ABC_PDR_domain1 The pl 96.4 0.003 6.4E-08 48.5 3.0 26 154-179 32-57 (202)
239 cd03252 ABCC_Hemolysin The ABC 96.4 0.0031 6.7E-08 49.5 3.1 25 154-178 27-51 (237)
240 PRK11300 livG leucine/isoleuci 96.4 0.003 6.4E-08 50.2 3.0 25 154-178 30-54 (255)
241 PRK11264 putative amino-acid A 96.4 0.0031 6.8E-08 49.9 3.1 25 154-178 28-52 (250)
242 PRK14250 phosphate ABC transpo 96.4 0.0031 6.8E-08 49.7 3.1 25 154-178 28-52 (241)
243 PRK09493 glnQ glutamine ABC tr 96.4 0.0032 6.9E-08 49.6 3.1 25 154-178 26-50 (240)
244 cd03230 ABC_DR_subfamily_A Thi 96.4 0.0033 7.2E-08 47.0 3.1 25 154-178 25-49 (173)
245 PRK14274 phosphate ABC transpo 96.4 0.0032 6.9E-08 50.2 3.2 25 154-178 37-61 (259)
246 PF03308 ArgK: ArgK protein; 96.4 0.011 2.3E-07 47.1 5.9 41 142-182 14-56 (266)
247 PRK14950 DNA polymerase III su 96.4 0.015 3.2E-07 52.0 7.6 47 134-180 16-63 (585)
248 TIGR02528 EutP ethanolamine ut 96.3 0.0025 5.4E-08 45.6 2.3 23 157-179 2-24 (142)
249 PRK06995 flhF flagellar biosyn 96.3 0.0054 1.2E-07 53.2 4.7 26 155-180 256-281 (484)
250 TIGR01188 drrA daunorubicin re 96.3 0.0031 6.8E-08 51.5 3.1 25 154-178 18-42 (302)
251 cd03294 ABC_Pro_Gly_Bertaine T 96.3 0.0033 7.1E-08 50.5 3.1 25 154-178 49-73 (269)
252 cd03247 ABCC_cytochrome_bd The 96.3 0.0035 7.6E-08 47.1 3.1 26 154-179 27-52 (178)
253 cd03228 ABCC_MRP_Like The MRP 96.3 0.0036 7.9E-08 46.7 3.2 26 154-179 27-52 (171)
254 cd03215 ABC_Carb_Monos_II This 96.3 0.0034 7.4E-08 47.3 3.1 26 154-179 25-50 (182)
255 PRK10575 iron-hydroxamate tran 96.3 0.003 6.4E-08 50.6 2.9 25 154-178 36-60 (265)
256 smart00178 SAR Sar1p-like memb 96.3 0.0059 1.3E-07 46.0 4.3 36 143-178 4-40 (184)
257 cd01878 HflX HflX subfamily. 96.3 0.0037 8.1E-08 47.8 3.3 26 154-179 40-65 (204)
258 PRK08154 anaerobic benzoate ca 96.3 0.0068 1.5E-07 49.8 5.0 27 154-180 132-158 (309)
259 PRK14239 phosphate transporter 96.3 0.0033 7.2E-08 49.8 3.1 24 154-177 30-53 (252)
260 PRK09435 membrane ATPase/prote 96.3 0.013 2.8E-07 48.6 6.6 37 144-180 43-81 (332)
261 cd03245 ABCC_bacteriocin_expor 96.3 0.0035 7.5E-08 48.6 3.1 25 154-178 29-53 (220)
262 cd03231 ABC_CcmA_heme_exporter 96.3 0.0036 7.7E-08 48.0 3.1 25 154-178 25-49 (201)
263 TIGR03410 urea_trans_UrtE urea 96.3 0.0033 7.2E-08 49.1 3.0 25 154-178 25-49 (230)
264 cd03273 ABC_SMC2_euk Eukaryoti 96.3 0.0038 8.2E-08 49.6 3.4 25 154-178 24-48 (251)
265 PRK13649 cbiO cobalt transport 96.3 0.0032 7E-08 50.8 3.0 25 154-178 32-56 (280)
266 PRK10744 pstB phosphate transp 96.3 0.0034 7.4E-08 50.1 3.1 25 154-178 38-62 (260)
267 PRK14238 phosphate transporter 96.3 0.0035 7.5E-08 50.4 3.2 25 154-178 49-73 (271)
268 PRK11831 putative ABC transpor 96.3 0.0033 7.2E-08 50.5 3.0 25 154-178 32-56 (269)
269 PF07726 AAA_3: ATPase family 96.3 0.0028 6E-08 45.1 2.2 24 158-181 2-25 (131)
270 PRK12377 putative replication 96.3 0.005 1.1E-07 48.9 4.0 39 154-194 100-138 (248)
271 cd03298 ABC_ThiQ_thiamine_tran 96.3 0.0036 7.8E-08 48.3 3.1 26 154-179 23-48 (211)
272 PRK15056 manganese/iron transp 96.3 0.0034 7.4E-08 50.5 3.1 25 154-178 32-56 (272)
273 cd03251 ABCC_MsbA MsbA is an e 96.3 0.0036 7.8E-08 49.0 3.1 25 154-178 27-51 (234)
274 COG0542 clpA ATP-binding subun 96.3 0.17 3.8E-06 46.3 14.0 46 134-179 491-545 (786)
275 PRK10619 histidine/lysine/argi 96.3 0.0035 7.6E-08 49.9 3.1 26 154-179 30-55 (257)
276 PRK14256 phosphate ABC transpo 96.3 0.0036 7.8E-08 49.7 3.1 25 154-178 29-53 (252)
277 PRK13638 cbiO cobalt transport 96.3 0.0033 7.1E-08 50.5 2.9 25 154-178 26-50 (271)
278 cd03283 ABC_MutS-like MutS-lik 96.3 0.0035 7.7E-08 48.1 3.0 23 156-178 26-48 (199)
279 PRK11701 phnK phosphonate C-P 96.3 0.0036 7.8E-08 49.9 3.1 26 154-179 31-56 (258)
280 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.3 0.0036 7.9E-08 49.2 3.1 25 154-178 28-52 (238)
281 PRK13645 cbiO cobalt transport 96.3 0.0035 7.6E-08 50.9 3.1 25 154-178 36-60 (289)
282 PRK14721 flhF flagellar biosyn 96.3 0.0081 1.8E-07 51.3 5.3 25 154-178 190-214 (420)
283 PRK07940 DNA polymerase III su 96.3 0.018 3.8E-07 49.0 7.3 45 134-178 5-59 (394)
284 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.3 0.0036 7.9E-08 48.8 3.0 26 154-179 47-72 (224)
285 PRK14235 phosphate transporter 96.3 0.0038 8.2E-08 50.1 3.2 25 154-178 44-68 (267)
286 TIGR00455 apsK adenylylsulfate 96.3 0.0043 9.4E-08 46.8 3.3 28 153-180 16-43 (184)
287 PRK11022 dppD dipeptide transp 96.3 0.0035 7.7E-08 51.8 3.1 26 154-179 32-57 (326)
288 cd03279 ABC_sbcCD SbcCD and ot 96.3 0.0035 7.6E-08 48.5 2.9 22 155-176 28-49 (213)
289 TIGR02238 recomb_DMC1 meiotic 96.3 0.0076 1.6E-07 49.6 4.9 50 154-203 95-148 (313)
290 PLN03046 D-glycerate 3-kinase; 96.3 0.004 8.6E-08 52.9 3.3 27 154-180 211-237 (460)
291 PRK14262 phosphate ABC transpo 96.3 0.0039 8.3E-08 49.4 3.1 24 154-177 28-51 (250)
292 COG0410 LivF ABC-type branched 96.3 0.004 8.7E-08 48.4 3.1 28 154-181 28-55 (237)
293 cd03290 ABCC_SUR1_N The SUR do 96.3 0.004 8.7E-08 48.3 3.1 26 154-179 26-51 (218)
294 PRK14267 phosphate ABC transpo 96.3 0.0038 8.3E-08 49.5 3.1 25 154-178 29-53 (253)
295 TIGR03005 ectoine_ehuA ectoine 96.3 0.0038 8.2E-08 49.5 3.1 25 154-178 25-49 (252)
296 cd03274 ABC_SMC4_euk Eukaryoti 96.3 0.004 8.7E-08 48.3 3.1 22 155-176 25-46 (212)
297 TIGR03873 F420-0_ABC_ATP propo 96.2 0.0037 8.1E-08 49.7 3.0 26 154-179 26-51 (256)
298 PRK12727 flagellar biosynthesi 96.2 0.0067 1.5E-07 53.1 4.7 26 154-179 349-374 (559)
299 PRK14243 phosphate transporter 96.2 0.004 8.6E-08 49.9 3.2 25 154-178 35-59 (264)
300 cd03253 ABCC_ATM1_transporter 96.2 0.004 8.6E-08 48.8 3.1 26 154-179 26-51 (236)
301 PRK13543 cytochrome c biogenes 96.2 0.004 8.7E-08 48.2 3.1 25 154-178 36-60 (214)
302 PRK14248 phosphate ABC transpo 96.2 0.0038 8.2E-08 50.1 3.0 24 154-177 46-69 (268)
303 PRK14952 DNA polymerase III su 96.2 0.0074 1.6E-07 53.7 5.0 47 134-180 13-60 (584)
304 cd03234 ABCG_White The White s 96.2 0.0041 8.8E-08 48.5 3.1 26 154-179 32-57 (226)
305 CHL00131 ycf16 sulfate ABC tra 96.2 0.0038 8.3E-08 49.5 3.0 25 154-178 32-56 (252)
306 PRK14259 phosphate ABC transpo 96.2 0.004 8.7E-08 50.0 3.1 25 154-178 38-62 (269)
307 PRK14273 phosphate ABC transpo 96.2 0.0041 8.9E-08 49.4 3.1 25 154-178 32-56 (254)
308 PRK13650 cbiO cobalt transport 96.2 0.004 8.8E-08 50.3 3.1 25 154-178 32-56 (279)
309 PRK13632 cbiO cobalt transport 96.2 0.004 8.7E-08 50.1 3.1 25 154-178 34-58 (271)
310 cd03236 ABC_RNaseL_inhibitor_d 96.2 0.0042 9.1E-08 49.6 3.2 26 154-179 25-50 (255)
311 PRK14237 phosphate transporter 96.2 0.0042 9.1E-08 49.8 3.2 26 154-179 45-70 (267)
312 PRK11231 fecE iron-dicitrate t 96.2 0.0041 8.8E-08 49.5 3.1 25 154-178 27-51 (255)
313 cd00983 recA RecA is a bacter 96.2 0.0065 1.4E-07 50.1 4.3 45 155-201 55-99 (325)
314 PRK14261 phosphate ABC transpo 96.2 0.0039 8.5E-08 49.5 3.0 24 154-177 31-54 (253)
315 TIGR01425 SRP54_euk signal rec 96.2 0.0092 2E-07 51.0 5.3 27 154-180 99-125 (429)
316 PRK10418 nikD nickel transport 96.2 0.0041 9E-08 49.4 3.1 25 154-178 28-52 (254)
317 PRK09112 DNA polymerase III su 96.2 0.015 3.2E-07 48.6 6.5 48 133-180 22-70 (351)
318 PRK13640 cbiO cobalt transport 96.2 0.0041 9E-08 50.3 3.1 26 154-179 32-57 (282)
319 cd01858 NGP_1 NGP-1. Autoanti 96.2 0.0087 1.9E-07 43.9 4.6 43 138-180 82-127 (157)
320 PF08298 AAA_PrkA: PrkA AAA do 96.2 0.01 2.2E-07 49.2 5.4 48 133-180 60-113 (358)
321 PRK10771 thiQ thiamine transpo 96.2 0.0042 9.2E-08 48.6 3.0 25 154-178 24-48 (232)
322 PRK14260 phosphate ABC transpo 96.2 0.0043 9.3E-08 49.5 3.1 25 154-178 32-56 (259)
323 PRK05642 DNA replication initi 96.2 0.008 1.7E-07 47.3 4.6 38 155-194 45-82 (234)
324 PRK13548 hmuV hemin importer A 96.2 0.0042 9.2E-08 49.5 3.1 25 154-178 27-51 (258)
325 PRK14489 putative bifunctional 96.2 0.0097 2.1E-07 50.0 5.4 43 139-181 186-231 (366)
326 PRK14265 phosphate ABC transpo 96.2 0.0043 9.3E-08 50.0 3.1 24 154-177 45-68 (274)
327 cd02034 CooC The accessory pro 96.2 0.006 1.3E-07 42.7 3.4 23 158-180 2-24 (116)
328 PRK09111 DNA polymerase III su 96.2 0.0081 1.8E-07 53.6 5.0 46 134-179 24-70 (598)
329 COG1123 ATPase components of v 96.2 0.0039 8.5E-08 54.4 3.0 24 155-178 317-340 (539)
330 cd03240 ABC_Rad50 The catalyti 96.2 0.0045 9.7E-08 47.7 3.1 21 156-176 23-43 (204)
331 COG3638 ABC-type phosphate/pho 96.2 0.0047 1E-07 48.3 3.1 24 154-177 29-52 (258)
332 PRK11153 metN DL-methionine tr 96.2 0.0043 9.3E-08 51.7 3.1 25 154-178 30-54 (343)
333 PRK14255 phosphate ABC transpo 96.2 0.0045 9.7E-08 49.1 3.1 24 154-177 30-53 (252)
334 PRK13648 cbiO cobalt transport 96.2 0.0045 9.6E-08 49.7 3.1 25 154-178 34-58 (269)
335 PRK09580 sufC cysteine desulfu 96.2 0.0041 8.8E-08 49.2 2.8 25 154-178 26-50 (248)
336 cd03254 ABCC_Glucan_exporter_l 96.2 0.0045 9.7E-08 48.3 3.0 25 154-178 28-52 (229)
337 TIGR02314 ABC_MetN D-methionin 96.2 0.0044 9.5E-08 51.6 3.1 26 154-179 30-55 (343)
338 PRK14240 phosphate transporter 96.2 0.0046 9.9E-08 49.0 3.1 24 154-177 28-51 (250)
339 PRK14270 phosphate ABC transpo 96.2 0.0044 9.5E-08 49.1 3.0 25 154-178 29-53 (251)
340 PRK15093 antimicrobial peptide 96.2 0.0045 9.7E-08 51.3 3.1 26 154-179 32-57 (330)
341 PRK06067 flagellar accessory p 96.2 0.011 2.4E-07 46.4 5.2 41 154-197 24-65 (234)
342 cd03248 ABCC_TAP TAP, the Tran 96.2 0.0048 1E-07 48.1 3.2 25 154-178 39-63 (226)
343 cd03244 ABCC_MRP_domain2 Domai 96.2 0.0048 1E-07 47.9 3.2 25 154-178 29-53 (221)
344 PRK12724 flagellar biosynthesi 96.2 0.0076 1.6E-07 51.3 4.5 25 155-179 223-247 (432)
345 PRK14269 phosphate ABC transpo 96.2 0.0047 1E-07 48.8 3.1 25 154-178 27-51 (246)
346 PRK13547 hmuV hemin importer A 96.2 0.0046 9.9E-08 49.8 3.1 25 154-178 26-50 (272)
347 TIGR02012 tigrfam_recA protein 96.2 0.0085 1.8E-07 49.4 4.7 45 154-200 54-98 (321)
348 cd01129 PulE-GspE PulE/GspE Th 96.1 0.0084 1.8E-07 48.1 4.5 41 138-178 63-103 (264)
349 PRK14251 phosphate ABC transpo 96.1 0.0048 1E-07 48.9 3.1 25 154-178 29-53 (251)
350 COG3899 Predicted ATPase [Gene 96.1 0.0092 2E-07 55.5 5.3 46 135-180 1-49 (849)
351 PRK13407 bchI magnesium chelat 96.1 0.0083 1.8E-07 49.8 4.6 45 134-178 8-52 (334)
352 COG1875 NYN ribonuclease and A 96.1 0.0068 1.5E-07 50.4 4.0 38 137-174 227-264 (436)
353 cd03272 ABC_SMC3_euk Eukaryoti 96.1 0.0045 9.9E-08 48.7 2.9 22 155-176 23-44 (243)
354 TIGR00390 hslU ATP-dependent p 96.1 0.0098 2.1E-07 50.6 5.0 48 134-181 12-73 (441)
355 TIGR01650 PD_CobS cobaltochela 96.1 0.042 9E-07 45.4 8.5 37 142-180 53-89 (327)
356 PRK11614 livF leucine/isoleuci 96.1 0.0047 1E-07 48.5 3.0 25 154-178 30-54 (237)
357 PRK08116 hypothetical protein; 96.1 0.0074 1.6E-07 48.5 4.1 37 156-194 115-151 (268)
358 PRK13546 teichoic acids export 96.1 0.0048 1E-07 49.5 3.0 26 154-179 49-74 (264)
359 TIGR01288 nodI ATP-binding ABC 96.1 0.0049 1.1E-07 50.4 3.1 25 154-178 29-53 (303)
360 PRK14268 phosphate ABC transpo 96.1 0.0048 1E-07 49.2 3.0 25 154-178 37-61 (258)
361 PRK13647 cbiO cobalt transport 96.1 0.005 1.1E-07 49.6 3.1 25 154-178 30-54 (274)
362 PF00158 Sigma54_activat: Sigm 96.1 0.0085 1.8E-07 44.8 4.1 43 137-179 2-46 (168)
363 PRK14253 phosphate ABC transpo 96.1 0.0052 1.1E-07 48.6 3.1 25 154-178 28-52 (249)
364 PRK00771 signal recognition pa 96.1 0.011 2.3E-07 50.8 5.2 28 154-181 94-121 (437)
365 PRK03695 vitamin B12-transport 96.1 0.005 1.1E-07 48.8 3.0 25 154-178 21-45 (248)
366 PF13245 AAA_19: Part of AAA d 96.1 0.01 2.3E-07 38.2 4.0 26 154-179 9-35 (76)
367 PRK14971 DNA polymerase III su 96.1 0.021 4.5E-07 51.3 7.2 46 134-179 17-63 (614)
368 PRK13639 cbiO cobalt transport 96.1 0.005 1.1E-07 49.6 3.1 25 154-178 27-51 (275)
369 PRK13651 cobalt transporter AT 96.1 0.0051 1.1E-07 50.4 3.1 25 154-178 32-56 (305)
370 PRK13646 cbiO cobalt transport 96.1 0.0051 1.1E-07 49.9 3.1 26 154-179 32-57 (286)
371 PRK10253 iron-enterobactin tra 96.1 0.0047 1E-07 49.4 2.9 26 154-179 32-57 (265)
372 PRK14266 phosphate ABC transpo 96.1 0.0054 1.2E-07 48.6 3.2 25 154-178 28-52 (250)
373 PRK11308 dppF dipeptide transp 96.1 0.0052 1.1E-07 50.9 3.1 26 154-179 40-65 (327)
374 PRK05703 flhF flagellar biosyn 96.1 0.0047 1E-07 52.9 3.0 25 155-179 221-245 (424)
375 cd03369 ABCC_NFT1 Domain 2 of 96.1 0.0056 1.2E-07 47.1 3.2 25 154-178 33-57 (207)
376 PRK13652 cbiO cobalt transport 96.1 0.0052 1.1E-07 49.6 3.1 25 154-178 29-53 (277)
377 PRK08533 flagellar accessory p 96.1 0.012 2.5E-07 46.3 5.0 39 155-195 24-62 (230)
378 PLN03187 meiotic recombination 96.1 0.012 2.6E-07 49.0 5.2 49 155-203 126-178 (344)
379 PRK14244 phosphate ABC transpo 96.1 0.0054 1.2E-07 48.6 3.2 25 154-178 30-54 (251)
380 PRK14275 phosphate ABC transpo 96.1 0.0053 1.1E-07 49.8 3.1 24 154-177 64-87 (286)
381 TIGR03740 galliderm_ABC gallid 96.1 0.0055 1.2E-07 47.7 3.1 25 154-178 25-49 (223)
382 PRK13641 cbiO cobalt transport 96.1 0.0054 1.2E-07 49.8 3.2 26 154-179 32-57 (287)
383 TIGR02323 CP_lyasePhnK phospho 96.1 0.0054 1.2E-07 48.7 3.1 26 154-179 28-53 (253)
384 cd00267 ABC_ATPase ABC (ATP-bi 96.1 0.006 1.3E-07 44.8 3.1 25 155-179 25-49 (157)
385 TIGR00968 3a0106s01 sulfate AB 96.1 0.0056 1.2E-07 48.1 3.2 25 154-178 25-49 (237)
386 PRK00454 engB GTP-binding prot 96.1 0.007 1.5E-07 45.7 3.6 27 152-178 21-47 (196)
387 TIGR02239 recomb_RAD51 DNA rep 96.1 0.01 2.2E-07 49.0 4.7 50 154-203 95-148 (316)
388 TIGR02769 nickel_nikE nickel i 96.1 0.0054 1.2E-07 49.1 3.1 25 154-178 36-60 (265)
389 PRK09183 transposase/IS protei 96.1 0.0054 1.2E-07 49.1 3.0 25 155-179 102-126 (259)
390 PRK15112 antimicrobial peptide 96.1 0.0055 1.2E-07 49.1 3.1 25 154-178 38-62 (267)
391 COG4619 ABC-type uncharacteriz 96.1 0.0056 1.2E-07 45.7 2.8 24 155-178 29-52 (223)
392 PRK14236 phosphate transporter 96.1 0.0056 1.2E-07 49.2 3.1 25 154-178 50-74 (272)
393 PRK06851 hypothetical protein; 96.1 0.014 3.1E-07 48.9 5.6 46 153-199 28-73 (367)
394 COG4136 ABC-type uncharacteriz 96.0 0.013 2.7E-07 43.0 4.6 37 154-192 27-65 (213)
395 PRK13644 cbiO cobalt transport 96.0 0.0057 1.2E-07 49.3 3.1 26 154-179 27-52 (274)
396 PRK14271 phosphate ABC transpo 96.0 0.0058 1.2E-07 49.3 3.1 25 154-178 46-70 (276)
397 TIGR03411 urea_trans_UrtD urea 96.0 0.0057 1.2E-07 48.2 3.1 25 154-178 27-51 (242)
398 PRK09984 phosphonate/organopho 96.0 0.0057 1.2E-07 48.9 3.1 26 154-179 29-54 (262)
399 COG0468 RecA RecA/RadA recombi 96.0 0.015 3.2E-07 47.0 5.4 48 154-203 59-106 (279)
400 PRK09473 oppD oligopeptide tra 96.0 0.0053 1.1E-07 50.9 2.9 26 154-179 41-66 (330)
401 COG3842 PotA ABC-type spermidi 96.0 0.0054 1.2E-07 51.0 3.0 23 155-177 31-53 (352)
402 cd03291 ABCC_CFTR1 The CFTR su 96.0 0.0059 1.3E-07 49.5 3.1 26 154-179 62-87 (282)
403 PRK14272 phosphate ABC transpo 96.0 0.0061 1.3E-07 48.3 3.1 25 154-178 29-53 (252)
404 PLN03186 DNA repair protein RA 96.0 0.011 2.4E-07 49.2 4.7 50 154-203 122-175 (342)
405 PRK13631 cbiO cobalt transport 96.0 0.006 1.3E-07 50.3 3.2 26 154-179 51-76 (320)
406 PRK11144 modC molybdate transp 96.0 0.0058 1.3E-07 51.1 3.1 25 154-178 23-47 (352)
407 PRK14258 phosphate ABC transpo 96.0 0.0061 1.3E-07 48.7 3.1 26 154-179 32-57 (261)
408 PRK13637 cbiO cobalt transport 96.0 0.006 1.3E-07 49.5 3.1 25 154-178 32-56 (287)
409 PRK10419 nikE nickel transport 96.0 0.0061 1.3E-07 48.9 3.1 25 154-178 37-61 (268)
410 cd03217 ABC_FeS_Assembly ABC-t 96.0 0.0065 1.4E-07 46.5 3.0 25 154-178 25-49 (200)
411 PRK13643 cbiO cobalt transport 96.0 0.0062 1.3E-07 49.4 3.1 25 154-178 31-55 (288)
412 TIGR02142 modC_ABC molybdenum 96.0 0.0062 1.3E-07 51.0 3.1 24 155-178 23-46 (354)
413 COG4559 ABC-type hemin transpo 96.0 0.0063 1.4E-07 47.0 2.9 27 154-180 26-52 (259)
414 TIGR03598 GTPase_YsxC ribosome 96.0 0.0071 1.5E-07 45.3 3.2 27 153-179 16-42 (179)
415 COG2884 FtsE Predicted ATPase 96.0 0.012 2.6E-07 44.7 4.2 28 155-182 28-55 (223)
416 PRK05201 hslU ATP-dependent pr 95.9 0.016 3.5E-07 49.4 5.4 47 134-180 15-75 (443)
417 PRK07952 DNA replication prote 95.9 0.02 4.3E-07 45.4 5.7 51 142-194 84-136 (244)
418 PRK15079 oligopeptide ABC tran 95.9 0.0065 1.4E-07 50.4 3.1 26 154-179 46-71 (331)
419 PRK14252 phosphate ABC transpo 95.9 0.0068 1.5E-07 48.5 3.1 25 154-178 41-65 (265)
420 PF06745 KaiC: KaiC; InterPro 95.9 0.012 2.5E-07 45.9 4.4 41 154-197 18-60 (226)
421 PF00308 Bac_DnaA: Bacterial d 95.9 0.012 2.7E-07 45.8 4.5 39 154-192 33-71 (219)
422 COG4107 PhnK ABC-type phosphon 95.9 0.0066 1.4E-07 45.6 2.8 24 155-178 32-55 (258)
423 KOG0991 Replication factor C, 95.9 0.013 2.9E-07 45.9 4.6 45 134-178 27-71 (333)
424 TIGR02639 ClpA ATP-dependent C 95.9 0.021 4.6E-07 52.3 6.7 45 135-179 455-508 (731)
425 TIGR00764 lon_rel lon-related 95.9 0.02 4.3E-07 51.4 6.3 55 134-191 18-72 (608)
426 PF00025 Arf: ADP-ribosylation 95.9 0.012 2.6E-07 44.1 4.3 34 145-178 3-37 (175)
427 TIGR01243 CDC48 AAA family ATP 95.9 0.011 2.4E-07 54.3 4.8 47 134-180 178-237 (733)
428 COG2274 SunT ABC-type bacterio 95.9 0.0059 1.3E-07 55.5 3.0 25 153-177 497-521 (709)
429 PTZ00035 Rad51 protein; Provis 95.9 0.019 4.1E-07 47.8 5.8 50 154-203 117-170 (337)
430 PRK14249 phosphate ABC transpo 95.9 0.0067 1.5E-07 48.1 3.0 25 154-178 29-53 (251)
431 TIGR02868 CydC thiol reductant 95.9 0.0063 1.4E-07 53.5 3.1 26 153-178 359-384 (529)
432 COG1125 OpuBA ABC-type proline 95.9 0.007 1.5E-07 48.0 3.0 25 154-178 26-50 (309)
433 PRK09354 recA recombinase A; P 95.9 0.013 2.9E-07 48.7 4.8 45 155-201 60-104 (349)
434 cd03250 ABCC_MRP_domain1 Domai 95.9 0.0074 1.6E-07 46.3 3.1 27 154-180 30-56 (204)
435 PRK06305 DNA polymerase III su 95.9 0.014 3.1E-07 50.5 5.1 46 134-179 17-63 (451)
436 PRK13636 cbiO cobalt transport 95.9 0.0071 1.5E-07 49.0 3.1 25 154-178 31-55 (283)
437 PLN00020 ribulose bisphosphate 95.9 0.0084 1.8E-07 50.2 3.5 29 153-181 146-174 (413)
438 PRK14254 phosphate ABC transpo 95.9 0.0068 1.5E-07 49.1 3.0 25 154-178 64-88 (285)
439 PRK13537 nodulation ABC transp 95.9 0.0071 1.5E-07 49.6 3.1 25 154-178 32-56 (306)
440 TIGR02982 heterocyst_DevA ABC 95.9 0.0073 1.6E-07 46.9 3.0 25 154-178 30-54 (220)
441 PRK11000 maltose/maltodextrin 95.9 0.007 1.5E-07 51.0 3.1 25 154-178 28-52 (369)
442 PRK13635 cbiO cobalt transport 95.9 0.0073 1.6E-07 48.8 3.1 26 154-179 32-57 (279)
443 PRK07764 DNA polymerase III su 95.9 0.013 2.9E-07 54.1 5.1 47 134-180 15-62 (824)
444 PRK13477 bifunctional pantoate 95.9 0.0078 1.7E-07 52.6 3.4 27 154-180 283-309 (512)
445 PF13555 AAA_29: P-loop contai 95.9 0.011 2.4E-07 36.5 3.2 21 157-177 25-45 (62)
446 PTZ00133 ADP-ribosylation fact 95.9 0.014 3E-07 43.9 4.5 25 154-178 16-40 (182)
447 PRK06526 transposase; Provisio 95.9 0.0076 1.6E-07 48.1 3.1 25 155-179 98-122 (254)
448 PRK13634 cbiO cobalt transport 95.9 0.0072 1.6E-07 49.1 3.1 25 154-178 32-56 (290)
449 cd01854 YjeQ_engC YjeQ/EngC. 95.9 0.011 2.4E-07 48.0 4.1 33 144-179 153-185 (287)
450 PRK12726 flagellar biosynthesi 95.9 0.015 3.3E-07 48.9 4.9 38 154-193 205-242 (407)
451 PF13086 AAA_11: AAA domain; P 95.8 0.017 3.6E-07 44.6 4.9 23 157-179 19-41 (236)
452 COG0529 CysC Adenylylsulfate k 95.8 0.012 2.7E-07 44.0 3.9 31 152-182 20-50 (197)
453 cd03289 ABCC_CFTR2 The CFTR su 95.8 0.0079 1.7E-07 48.6 3.1 26 154-179 29-54 (275)
454 cd03213 ABCG_EPDR ABCG transpo 95.8 0.0079 1.7E-07 45.9 3.0 26 154-179 34-59 (194)
455 TIGR00157 ribosome small subun 95.8 0.014 3.1E-07 46.2 4.6 34 143-179 111-144 (245)
456 COG1131 CcmA ABC-type multidru 95.8 0.0075 1.6E-07 49.2 3.0 26 155-180 31-56 (293)
457 PRK04220 2-phosphoglycerate ki 95.8 0.017 3.6E-07 47.1 5.0 28 153-180 90-117 (301)
458 cd02042 ParA ParA and ParB of 95.8 0.0074 1.6E-07 40.9 2.5 24 157-180 1-25 (104)
459 PRK10865 protein disaggregatio 95.8 0.026 5.5E-07 52.7 6.8 46 134-179 568-622 (857)
460 COG1127 Ttg2A ABC-type transpo 95.8 0.0081 1.8E-07 47.2 3.0 26 154-179 33-58 (263)
461 TIGR01618 phage_P_loop phage n 95.8 0.0069 1.5E-07 47.2 2.6 24 155-178 12-35 (220)
462 PRK14264 phosphate ABC transpo 95.8 0.008 1.7E-07 49.2 3.1 25 154-178 70-94 (305)
463 TIGR02237 recomb_radB DNA repa 95.8 0.0098 2.1E-07 45.7 3.5 24 155-178 12-35 (209)
464 PRK07471 DNA polymerase III su 95.8 0.016 3.4E-07 48.8 4.9 46 133-178 18-64 (365)
465 TIGR03522 GldA_ABC_ATP gliding 95.8 0.0081 1.8E-07 49.1 3.1 25 154-178 27-51 (301)
466 cd04154 Arl2 Arl2 subfamily. 95.8 0.0076 1.7E-07 44.7 2.8 23 156-178 15-37 (173)
467 PRK13549 xylose transporter AT 95.8 0.0071 1.5E-07 53.0 3.0 25 154-178 287-311 (506)
468 PF08423 Rad51: Rad51; InterP 95.8 0.019 4.1E-07 45.9 5.2 50 155-204 38-91 (256)
469 cd03270 ABC_UvrA_I The excisio 95.8 0.0065 1.4E-07 47.5 2.5 19 154-172 20-38 (226)
470 COG1245 Predicted ATPase, RNas 95.8 0.0072 1.6E-07 51.7 2.8 23 155-177 367-389 (591)
471 PF05970 PIF1: PIF1-like helic 95.8 0.031 6.8E-07 47.0 6.6 41 142-182 9-49 (364)
472 cd03280 ABC_MutS2 MutS2 homolo 95.8 0.0083 1.8E-07 46.0 3.0 22 155-176 28-49 (200)
473 cd01855 YqeH YqeH. YqeH is an 95.8 0.021 4.5E-07 43.2 5.1 40 138-179 112-151 (190)
474 PRK15134 microcin C ABC transp 95.8 0.0077 1.7E-07 53.1 3.1 26 154-179 34-59 (529)
475 COG1222 RPT1 ATP-dependent 26S 95.8 0.019 4E-07 47.7 5.0 47 134-180 151-210 (406)
476 PRK10762 D-ribose transporter 95.8 0.0075 1.6E-07 52.8 3.0 25 154-178 29-53 (501)
477 TIGR01420 pilT_fam pilus retra 95.8 0.021 4.5E-07 47.6 5.5 27 153-179 120-146 (343)
478 PRK14263 phosphate ABC transpo 95.8 0.0088 1.9E-07 47.8 3.2 25 154-178 33-57 (261)
479 cd03300 ABC_PotA_N PotA is an 95.8 0.009 2E-07 46.8 3.2 26 154-179 25-50 (232)
480 PRK13536 nodulation factor exp 95.8 0.0085 1.8E-07 49.9 3.2 25 154-178 66-90 (340)
481 TIGR03269 met_CoM_red_A2 methy 95.8 0.008 1.7E-07 52.9 3.1 25 154-178 25-49 (520)
482 PRK13633 cobalt transporter AT 95.8 0.0085 1.8E-07 48.4 3.1 25 154-178 35-59 (280)
483 TIGR02633 xylG D-xylose ABC tr 95.8 0.0076 1.7E-07 52.7 3.0 25 154-178 26-50 (500)
484 PRK10938 putative molybdenum t 95.8 0.0079 1.7E-07 52.5 3.1 25 154-178 28-52 (490)
485 PRK15064 ABC transporter ATP-b 95.8 0.0079 1.7E-07 53.0 3.1 25 154-178 26-50 (530)
486 PRK13642 cbiO cobalt transport 95.8 0.0088 1.9E-07 48.2 3.1 25 154-178 32-56 (277)
487 PF01078 Mg_chelatase: Magnesi 95.8 0.023 5.1E-07 43.7 5.2 42 134-177 3-44 (206)
488 PRK14953 DNA polymerase III su 95.7 0.019 4.2E-07 50.1 5.3 46 134-179 16-62 (486)
489 PRK15439 autoinducer 2 ABC tra 95.7 0.0083 1.8E-07 52.7 3.1 25 154-178 36-60 (510)
490 TIGR00362 DnaA chromosomal rep 95.7 0.012 2.6E-07 50.1 4.1 40 155-194 136-175 (405)
491 PRK10851 sulfate/thiosulfate t 95.7 0.0089 1.9E-07 50.0 3.1 26 154-179 27-52 (353)
492 PRK10070 glycine betaine trans 95.7 0.0082 1.8E-07 51.1 2.9 25 154-178 53-77 (400)
493 PRK14088 dnaA chromosomal repl 95.7 0.013 2.8E-07 50.6 4.1 50 144-194 118-169 (440)
494 PRK05342 clpX ATP-dependent pr 95.7 0.017 3.8E-07 49.3 4.9 47 134-180 71-133 (412)
495 COG3839 MalK ABC-type sugar tr 95.7 0.0087 1.9E-07 49.5 3.0 24 154-177 28-51 (338)
496 PRK10261 glutathione transport 95.7 0.0082 1.8E-07 54.0 3.1 25 154-178 41-65 (623)
497 KOG0927 Predicted transporter 95.7 0.16 3.4E-06 44.5 10.5 27 154-180 415-441 (614)
498 TIGR02782 TrbB_P P-type conjug 95.7 0.017 3.6E-07 47.3 4.6 24 156-179 133-156 (299)
499 PRK13549 xylose transporter AT 95.7 0.0084 1.8E-07 52.6 3.1 25 154-178 30-54 (506)
500 cd03275 ABC_SMC1_euk Eukaryoti 95.7 0.0097 2.1E-07 47.2 3.1 23 155-177 22-44 (247)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.95 E-value=1.1e-26 Score=210.22 Aligned_cols=195 Identities=22% Similarity=0.354 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 046665 5 TFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSH---------IEEWLISVDEVISEVRKLIEVEEKS 75 (204)
Q Consensus 5 ~~~l~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~el~~l~~~l~~~---------~~~wl~~vr~~~~d~ed~ld~~~~~ 75 (204)
+..++++.+.+.. .+..+.+.+.++..|+++|..|+.+++++ +..|...++++.|++||+++.+.-.
T Consensus 6 s~~~~~~~~~l~~----~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~ 81 (889)
T KOG4658|consen 6 SFGVEKLDQLLNR----ESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVE 81 (889)
T ss_pred EEehhhHHHHHHH----HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356667665553 44677788889999999999999999987 8899999999999999999876311
Q ss_pred -----------------ccccccccc-cChhHHhHHHHHHHHHHHHHHhhhhcCCCccccc-ccCcccccccccCCCccc
Q 046665 76 -----------------NNRCFNGLC-PNLKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSF-RTIPEEIWLKSTEGFIHF 136 (204)
Q Consensus 76 -----------------~~~~~~~~~-~~~~~~~~~~~~i~~~~~~v~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 136 (204)
+.-|+..++ ......+.+++++.++...++.+..++.+..... ..|.+.++..|......
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~- 160 (889)
T KOG4658|consen 82 EIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD- 160 (889)
T ss_pred HHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-
Confidence 011222222 2344456677777777777777766655655443 22333444555444444
Q ss_pred cchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc-cCCCCceEEEEEcCCCCChHhhhC
Q 046665 137 ESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK-GNNLFEKVISAQVSQTPQIKKIQE 204 (204)
Q Consensus 137 ~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~iq~ 204 (204)
+|.+..+++++++|.+++..++||+||||+||||||++|||+.. ++++||.+|||+||++|+...||+
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~ 229 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQ 229 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHH
Confidence 99999999999999998889999999999999999999999988 999999999999999999999985
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.54 E-value=1.2e-14 Score=117.42 Aligned_cols=65 Identities=29% Similarity=0.561 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhhh
Q 046665 139 RKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQ 203 (204)
Q Consensus 139 ~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~iq 203 (204)
|+.++++|.++|.+ ++.++|+|+||||+||||||+.+|++...+++|+.++||.+++.++...+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~ 67 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLL 67 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHH
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccc
Confidence 68899999999987 789999999999999999999999997777899999999999998876553
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.10 E-value=1.8e-10 Score=109.01 Aligned_cols=59 Identities=20% Similarity=0.452 Sum_probs=50.5
Q ss_pred CCccccchHHHHHHHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEE
Q 046665 132 GFIHFESRKSTLKEILGSLS--NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQ 192 (204)
Q Consensus 132 ~~~~~~g~~~~~~~l~~~L~--~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~ 192 (204)
+...++|++...+++..+|. .++.++|+||||||+||||||+.+|+... .+|+..+|+.
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~ 242 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFID 242 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEee
Confidence 34678999999999999874 45789999999999999999999999765 5699888763
No 4
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.86 E-value=3.2e-09 Score=84.13 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=47.2
Q ss_pred HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC--CChHhhh
Q 046665 146 ILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT--PQIKKIQ 203 (204)
Q Consensus 146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~iq 203 (204)
.++.+.. ..-..++|+|.+|+|||||++.+|++.... +|++++||+++++ +++.++|
T Consensus 6 ~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~ 65 (249)
T cd01128 6 VVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQ 65 (249)
T ss_pred heeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHH
Confidence 4444443 456789999999999999999999987765 8999999998887 7887776
No 5
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.77 E-value=7.8e-09 Score=86.04 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=47.7
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC--ChHhhh
Q 046665 145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP--QIKKIQ 203 (204)
Q Consensus 145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~iq 203 (204)
++++++.. +.-+-..|+|.+|+||||||+.||++...+ ||++++||++++.+ .+.++|
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiq 218 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQ 218 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHH
Confidence 34555443 356778999999999999999999998876 89999999999998 666665
No 6
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.39 E-value=1.8e-06 Score=73.36 Aligned_cols=67 Identities=22% Similarity=0.241 Sum_probs=55.9
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI 202 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 202 (204)
.++++.+...+.++..|.. .+.|.++|++|+||||+|+.+.+......+|+.+.||+++++++..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDF 241 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDF 241 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHH
Confidence 3467788889999998874 456777999999999999999998766567899999999999886653
No 7
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.39 E-value=5.6e-07 Score=67.67 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=34.5
Q ss_pred cccchHHHHHHHHHhhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCC
Q 046665 135 HFESRKSTLKEILGSLS---NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLF 185 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~---~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F 185 (204)
.++||+.+.+++...|. ....+.+-|+|.+|+|||||.+.++........+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~ 54 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY 54 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence 37899999999999993 3567999999999999999999999887655333
No 8
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.39 E-value=5.3e-07 Score=75.52 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=43.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC--CChHhhh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT--PQIKKIQ 203 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~iq 203 (204)
+.-..++|+|.+|+|||||++.+++....+ ||+..+||.+++. +++.++|
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLq 217 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQ 217 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHH
Confidence 356789999999999999999999987654 8999999999977 6777765
No 9
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.31 E-value=7.4e-07 Score=69.23 Aligned_cols=45 Identities=33% Similarity=0.424 Sum_probs=38.2
Q ss_pred ccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 136 FESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 136 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
++||+.+++.|.+++..+..+.+.|+|+.|+|||+|++.+.+..+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 579999999999999887789999999999999999999999763
No 10
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.19 E-value=6.9e-06 Score=58.62 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=45.2
Q ss_pred chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCC
Q 046665 138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQ 198 (204)
Q Consensus 138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 198 (204)
|++.....+...+.......+-|+|..|+|||||++.+++..... -..++++..++...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~ 60 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLE 60 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhh
Confidence 677788888888877677889999999999999999999986421 13366666655443
No 11
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.14 E-value=1.2e-05 Score=67.94 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=47.3
Q ss_pred CccccchHHHHHHHHHhhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665 133 FIHFESRKSTLKEILGSLSN----HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT 196 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~ 196 (204)
+..++||+.+.+.|...|.+ .....+-|+|+.|+||||+++.++++.......-..++|.....
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 46789999999999998742 34566789999999999999999998754422223555554433
No 12
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.08 E-value=1.5e-05 Score=66.61 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=41.1
Q ss_pred CccccchHHHHHHHHHhhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSLSN----HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+..++||+.+++.|..+|.+ .....+-|+|++|+|||++++.++++..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999863 3456899999999999999999998753
No 13
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.95 E-value=8.3e-06 Score=57.19 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
||.|.|+.|+||||+|+.+-+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 699999999999999999998753
No 14
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.89 E-value=2.1e-05 Score=64.22 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=40.2
Q ss_pred ccccchHHHHHHHHHhhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 134 IHFESRKSTLKEILGSLS-----NHNFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~-----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
..++|++..++.|..++. ...+..+-++|+.|+||||||+.+.+....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999988885 344667889999999999999999987653
No 15
>PTZ00202 tuzin; Provisional
Probab=97.83 E-value=4.9e-05 Score=64.58 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=40.7
Q ss_pred CCccccchHHHHHHHHHhhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 132 GFIHFESRKSTLKEILGSLSN---HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 132 ~~~~~~g~~~~~~~l~~~L~~---~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+...++||+.+...|...|.+ +...++.|.|++|+|||||++.+.....
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 356799999999999988854 2356899999999999999999996543
No 16
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.81 E-value=3.2e-05 Score=60.01 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=34.6
Q ss_pred ccccchHHHHHHHHHhhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 134 IHFESRKSTLKEILGSLS-----NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~-----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
.+++|.+.-++.+.-++. ++.+.-+-.||++|+||||||+.|-+.....
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC
Confidence 578999988877655543 2457788999999999999999999987754
No 17
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.75 E-value=6.5e-05 Score=58.47 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=42.3
Q ss_pred chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
+....++.+..++.......+-|+|..|+||||||+.+++..... ....+++.++.
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~ 76 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAE 76 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHH
Confidence 455677888888766677899999999999999999999875422 33456666543
No 18
>PRK06696 uridine kinase; Validated
Probab=97.74 E-value=6.6e-05 Score=58.66 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 139 RKSTLKEILGSLS---NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 139 ~~~~~~~l~~~L~---~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
|.+.+++|.+.+. .+...+|+|.|.+|+||||||+.+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5566677777764 35688999999999999999999998764
No 19
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.71 E-value=6.8e-05 Score=62.24 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=41.1
Q ss_pred cccchHHHHHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 135 HFESRKSTLKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
+++|.++.++++++++.. ...+++.++|+.|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 689999999999999853 24689999999999999999999987654
No 20
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.67 E-value=0.00019 Score=57.40 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 152 NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+.....+.|+|+.|+|||||++.+++...
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44567899999999999999999998765
No 21
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.66 E-value=8.5e-05 Score=61.41 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=34.1
Q ss_pred HHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665 146 ILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS 194 (204)
Q Consensus 146 l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 194 (204)
|-+++..+.+.-+-+||++|.||||||+.|-+..+... .-+|..|
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelS 197 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELS 197 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEe
Confidence 33444567788999999999999999999998766443 4455555
No 22
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.65 E-value=8.1e-05 Score=61.55 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHhhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 134 IHFESRKSTLKEILGSLS-----NHNFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~-----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
.+++|++..++.+..++. ......+-++|+.|+||||||+.+.+....
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 568999999988877764 234667889999999999999999998654
No 23
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.65 E-value=5.5e-05 Score=64.51 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=38.5
Q ss_pred ccccchHHHHHH---HHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKE---ILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~---l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+..++. +..++..+....+-++|++|+||||||+.+.+...
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357788777555 77777777777888999999999999999998754
No 24
>PRK06547 hypothetical protein; Provisional
Probab=97.63 E-value=0.00011 Score=55.10 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=29.8
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 145 EILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 145 ~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
.+...+......+|+|.|..|+||||||+.+.+....
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~ 41 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTGF 41 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444455677899999999999999999999876543
No 25
>PF13173 AAA_14: AAA domain
Probab=97.62 E-value=9.7e-05 Score=52.54 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=29.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
.+++.|.|+.|+|||||+++++.+.. ....++++....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~ 39 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDD 39 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCC
Confidence 46899999999999999999998755 234466665544
No 26
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.57 E-value=0.00013 Score=65.33 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=45.9
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCc---eEEEEEcC
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFE---KVISAQVS 194 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~---~~~wv~vs 194 (204)
+.++|.+.....+...+.......+.|+|..|+||||||+.+++.......+. ..-|+.+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 35789888888888877766677899999999999999999998765433332 23455553
No 27
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.52 E-value=9e-05 Score=52.13 Aligned_cols=21 Identities=48% Similarity=0.800 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 046665 158 IGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 158 I~IvG~gGiGKTTLa~~v~~~ 178 (204)
|.|.|..|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999876
No 28
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.51 E-value=8.3e-05 Score=52.66 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=31.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccC---CCCceEEEEEcCCCCChHhh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN---NLFEKVISAQVSQTPQIKKI 202 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~i 202 (204)
+-+.+.|+|..|+|||++++.+.++..-. ..-...+|+..+...+...+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDF 54 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHH
Confidence 35688999999999999999999875310 01234678888776655543
No 29
>PRK04195 replication factor C large subunit; Provisional
Probab=97.50 E-value=0.00017 Score=62.84 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=40.2
Q ss_pred ccccchHHHHHHHHHhhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSN----HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+...+.+.+|+.. ...+.+-|+|+.|+||||+|+.+.+...
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999863 1268899999999999999999998764
No 30
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.48 E-value=0.00018 Score=59.36 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=40.4
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|++..++.+.+++..+....+-++|..|+||||+|+.+.+...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 45789999999999998877766788999999999999999987654
No 31
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.00037 Score=57.22 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=53.6
Q ss_pred ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc----cCCCCceEEEEE-cCCCCChHhhh
Q 046665 134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK----GNNLFEKVISAQ-VSQTPQIKKIQ 203 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~----~~~~F~~~~wv~-vs~~~~~~~iq 203 (204)
.+++|.+..++.+.+++..+. .+..-++|+.|+||||||+.+....- ...|+|...|.. -+++..++.|.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH
Confidence 357799899999999997765 46778999999999999999998542 235778877776 45666666553
No 32
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.43 E-value=0.00051 Score=56.19 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=41.0
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|++...+.+.+++..+....+-++|..|+||||+++.+.+...
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 45789999999999999877777789999999999999999998753
No 33
>PRK07667 uridine kinase; Provisional
Probab=97.43 E-value=0.00021 Score=54.60 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=29.1
Q ss_pred HHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 144 KEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 144 ~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+.|++.+.. ++..+|+|-|..|+||||||+.+.....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455655543 3457999999999999999999998653
No 34
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0056 Score=54.87 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=41.1
Q ss_pred CccccchHHHHHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+.+.+|.++-+++|++++.- -+-+++..+|++|||||.+++.|-.-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn 463 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN 463 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC
Confidence 45678999999999999852 3568999999999999999999998765
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=97.41 E-value=0.00046 Score=56.87 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=38.6
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++|.+...+.|.+++..++..-+-++|+.|+||||+|+.+.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4578888888888888877666667799999999999999998875
No 36
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.40 E-value=0.00024 Score=65.65 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++||+.+++.+++.|.....+-+-++|.+|+|||++|+.+....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987655556799999999999999998764
No 37
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.40 E-value=0.00025 Score=62.21 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=40.3
Q ss_pred cccchHHHHHHHHHhhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 135 HFESRKSTLKEILGSLS------NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~------~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+++|.++.+++|++.|. +..-+++.++|+.|+||||||+.+.+-.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 57899999999999983 45668999999999999999999998654
No 38
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.38 E-value=0.00038 Score=54.56 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+...+|+|.|..|+|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5678999999999999999999987654
No 39
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.37 E-value=0.00019 Score=51.66 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
||-++|+.|+||||||+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999854
No 40
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.35 E-value=0.0002 Score=45.23 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+|.|.|..|+||||+++.+-+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999874
No 41
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.33 E-value=0.00045 Score=50.08 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
.+|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 489999999999999999999987643 355555665555
No 42
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.33 E-value=0.00028 Score=56.18 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=25.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
+..+|-++||+|+||||..|.++.+...+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 56789999999999999999999987654
No 43
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.00033 Score=61.22 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=40.1
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
.+++|.+...+.|.+++..+.+ ..+-++|+.|+||||+|+.+.+....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4578999988999998887664 56699999999999999999887643
No 44
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.00049 Score=55.10 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=40.6
Q ss_pred ccccchHHHHHHHHHhhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 134 IHFESRKSTLKEILGSLS-----NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~-----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
.+++|.++-++++-=++. +..+--+-++|++|+||||||..|-+...+.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 467899888888766664 3467889999999999999999999987765
No 45
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.30 E-value=0.00038 Score=64.44 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=40.6
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++||+.++.+++..|......-+-++|.+|+||||||+.+....
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987766666799999999999999999874
No 46
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00046 Score=61.49 Aligned_cols=48 Identities=23% Similarity=0.206 Sum_probs=40.7
Q ss_pred CccccchHHHHHHHHHhhc----CC--CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSLS----NH--NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~----~~--~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+.+.+|.++-+++|+++|. .+ +-.++.+||++|+|||.|++.|-+...
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~ 375 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG 375 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC
Confidence 3567899999999999984 22 457999999999999999999998765
No 47
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.27 E-value=0.00041 Score=56.31 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+.+-+|||.|..|+||||||+.+-.-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999877543
No 48
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.26 E-value=0.00046 Score=63.05 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=40.2
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++||+.++++++..|......=+-++|.+|+|||+||+.+....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999987666666799999999999999999875
No 49
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.26 E-value=0.0006 Score=53.40 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=37.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCceEEEEEcCCCCChHhh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNN----LFEKVISAQVSQTPQIKKI 202 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i 202 (204)
.-.++.|+|.+|+|||||+.++.-...... ....++|++-..+|+.+.+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 357999999999999999999975432221 1367999998888877655
No 50
>PHA00729 NTP-binding motif containing protein
Probab=97.25 E-value=0.00049 Score=53.71 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=28.8
Q ss_pred HHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 144 KEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 144 ~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.++++-+.+.+..-|.|.|.+|+||||||..+-+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555666666789999999999999999998864
No 51
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.25 E-value=0.00048 Score=62.61 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=37.1
Q ss_pred ccccchHHHHH---HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLK---EILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~---~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+..+. .+...+..+...-+-++|++|+||||||+.+.+...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 45778877663 455666677777788999999999999999998654
No 52
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.23 E-value=0.00053 Score=56.21 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=39.7
Q ss_pred ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++|.+...+.+.+++..+. ..++-++|..|+||||||+.+++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 567899999999999998765 4677779999999999999999865
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.00038 Score=58.18 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=27.2
Q ss_pred HhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 148 GSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 148 ~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..+..+++.-.-.||++|+||||||+.|-..-.
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~ 73 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN 73 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC
Confidence 334467888888999999999999999988544
No 54
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.20 E-value=0.00035 Score=49.12 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=24.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
...+.|+|..|+||||+++.+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3578999999999999999999876554
No 55
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.19 E-value=0.00054 Score=57.48 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=38.4
Q ss_pred CccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++.|++..++.|...+. . ...+-+-++|+.|+||||||+.+.+...
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 4567899999999888763 1 1245689999999999999999998754
No 56
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.17 E-value=0.00047 Score=53.21 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=27.3
Q ss_pred hhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 149 SLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 149 ~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+..+++.+|+++|..|+|||||.+++.....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34456899999999999999999999987643
No 57
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.16 E-value=0.00062 Score=57.69 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=38.3
Q ss_pred CccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++.|++..+++|...+. . ...+-|-++|++|+|||+||+.+.+...
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 3567899999888887653 1 2356689999999999999999998754
No 58
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.16 E-value=0.00058 Score=63.39 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=40.3
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++||+.++..++..|....-.-+-++|.+|+||||||+.+-...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999987666666799999999999999998764
No 59
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.15 E-value=0.0007 Score=53.37 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=32.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT 196 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~ 196 (204)
.-.+.|+|..|+|||||+..+..+.. +.|.++.+++-..+
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~~~n 52 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITPEYN 52 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEecCCc
Confidence 44688999999999999999998765 45988888865443
No 60
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.15 E-value=0.00036 Score=48.46 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 158 IGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 158 I~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
|.|+|..|+|||||.+.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999976543
No 61
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.14 E-value=0.0011 Score=53.01 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=31.2
Q ss_pred cccchHHHHHHH---HHhhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 135 HFESRKSTLKEI---LGSLS------------NHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 135 ~~~g~~~~~~~l---~~~L~------------~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.++|.+..+..| +.|.. .+...-+-++|++|+||||+|+.+.+..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 467877655444 34431 1234567899999999999999998753
No 62
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.12 E-value=0.00051 Score=48.43 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 046665 158 IGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 158 I~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
|-|+|..|+||||||+.+.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 56899999999999999999865
No 63
>PRK10536 hypothetical protein; Provisional
Probab=97.11 E-value=0.0039 Score=49.62 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=36.2
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..+.++......++.+|.+. .++.+.|.+|.|||+||..+.-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 44667888888888888764 49999999999999999998875
No 64
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.09 E-value=0.0014 Score=54.49 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=51.7
Q ss_pred CccccchHHHHHHHHHhhcCCC---ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHh
Q 046665 133 FIHFESRKSTLKEILGSLSNHN---FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKK 201 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~~~---~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 201 (204)
.+.+.+|+.+...+..++.+.+ +..|-|+|-.|.|||.+.+++++..... .+|+++-.-|+.+-
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~ 71 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAI 71 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHH
Confidence 4567899999999999887654 3455789999999999999999987432 68998888777654
No 65
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.05 E-value=0.0018 Score=46.47 Aligned_cols=29 Identities=24% Similarity=0.111 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
.-.+|.+.|.-|.|||||++.+.+.....
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45689999999999999999999986543
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0022 Score=56.54 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++|.+..++.|.+.+..+.+ ..+-++|+.|+||||+|+.+.+..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887654 457789999999999999998754
No 67
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.02 E-value=0.0011 Score=61.67 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++||+.++.+++..|......-+-++|.+|+|||+||+.+....
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999977666666689999999999999988764
No 68
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.02 E-value=0.00074 Score=51.71 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....+|.|+|+.|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999865
No 69
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.0011 Score=57.55 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+.....|.+.+..+.+ +.+-++|+.|+||||+|+.+.+...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4588998888888888877665 5688999999999999999987643
No 70
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.02 E-value=0.0015 Score=51.51 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665 142 TLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS 194 (204)
Q Consensus 142 ~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 194 (204)
....+-.+........+-|+|+.|+|||+|++.+++..... -..+.++++.
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~ 82 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLD 82 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHH
Confidence 44455555445556789999999999999999999865422 1234555554
No 71
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.02 E-value=0.0015 Score=52.93 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=29.4
Q ss_pred HHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 146 ILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 146 l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
.-.++.+.+..+|.|+|..|+|||||+..+.+....
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 333444568999999999999999999999987653
No 72
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0013 Score=55.14 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=39.7
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+..++.+.+.+..+.+ +.+-++|+.|+||||||+.+.+...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4678999999999998877654 5678999999999999999987653
No 73
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.00 E-value=0.0013 Score=55.33 Aligned_cols=40 Identities=33% Similarity=0.423 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCC----CccEEEEEcCCCCcH-HHHHHHHHHHh
Q 046665 140 KSTLKEILGSLSNH----NFNMIGVYGMGGIGK-TMLVKEVAGQA 179 (204)
Q Consensus 140 ~~~~~~l~~~L~~~----~~~vI~IvG~gGiGK-TTLa~~v~~~~ 179 (204)
.+....+..|+.++ +-+||++||+.|+|| |||||....-.
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 33445555565554 489999999999999 67887766544
No 74
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.98 E-value=0.00064 Score=46.81 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 046665 158 IGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 158 I~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
|-|+|.+|+|||+||+.+..+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999887644
No 75
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.97 E-value=0.017 Score=42.15 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHh
Q 046665 5 TFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSH----------IEEWLISVDEVISEVRKLIEVEEK 74 (204)
Q Consensus 5 ~~~l~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~el~~l~~~l~~~----------~~~wl~~vr~~~~d~ed~ld~~~~ 74 (204)
++++|.+.+.|...+....+....++.-++.|...++.|...++++ -+.=+.++.+...+++++++++..
T Consensus 8 gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk 87 (147)
T PF05659_consen 8 GAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSK 87 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 4577777777777776666777778999999999999999988876 356778888888888888887632
Q ss_pred hccccccccccChhHHhHHHHHHHHHHHHHHhhhh
Q 046665 75 SNNRCFNGLCPNLKTHYQLSKKAEMEVNAIVGLHE 109 (204)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~i~~ 109 (204)
.. .+++...++.+++|+++.+.+.....
T Consensus 88 ~~-------r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 88 VR-------RWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred cc-------HHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 11 12455677788888888887766554
No 76
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.96 E-value=0.0018 Score=50.51 Aligned_cols=45 Identities=27% Similarity=0.286 Sum_probs=35.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI 202 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 202 (204)
-.++-|+|.+|+|||||+.++..+.... -..++|++.- .++.+.+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 5699999999999999999998765422 4668899887 6665544
No 77
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.92 E-value=0.00075 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999986
No 78
>PRK08727 hypothetical protein; Validated
Probab=96.92 E-value=0.0043 Score=48.79 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 137 ESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 137 ~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
+|.......+..+.......-+.|+|..|+|||+|++.+++....+ .-..+++++.+
T Consensus 23 ~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~ 79 (233)
T PRK08727 23 AAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA 79 (233)
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH
Confidence 3444444444444434445679999999999999999999875533 23456766543
No 79
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.91 E-value=0.00086 Score=47.87 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
-.+++|+|..|+|||||.+.+....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 4689999999999999999998653
No 80
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.91 E-value=0.002 Score=50.25 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=28.3
Q ss_pred HHHHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 142 TLKEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 142 ~~~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....+.++... .....+-|+|..|+|||+||+.+++..
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34444444432 345678899999999999999999875
No 81
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.003 Score=56.47 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=39.7
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+..++.|.+++..+++ +.+-++|..|+||||||+.+-+..-
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999987765 4568899999999999999887543
No 82
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.87 E-value=0.0017 Score=51.89 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=36.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP 197 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~ 197 (204)
.-+++.|+|.+|+|||+++.+.-...... .+.++||+..+++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~ 63 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESP 63 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCH
Confidence 56899999999999999999988876633 8899999998875
No 83
>PRK06893 DNA replication initiation factor; Validated
Probab=96.86 E-value=0.0013 Score=51.54 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=29.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS 194 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 194 (204)
....+-++|..|+|||+|++.+.+....+ .....|++++
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 34578999999999999999999975433 2345677664
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=96.85 E-value=0.0033 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+-++|.+|+||||+|+.+.+..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999997753
No 85
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0018 Score=56.02 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+.....|..++..+.+. .+-++|..|+||||+|+.+.+...
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999887754 688999999999999999987643
No 86
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.84 E-value=0.0016 Score=59.55 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=39.0
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++||+.++.+++..|......-+-++|..|+|||+||+.+....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999998877544555689999999999999999764
No 87
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.83 E-value=0.0019 Score=53.78 Aligned_cols=46 Identities=11% Similarity=0.232 Sum_probs=39.9
Q ss_pred CccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 133 FIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-..++|.+..+.-|+..+.+..++-|-|.|..|+||||+|+.+++-
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999998888888888888887779999999999999999765
No 88
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.00098 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|+|||||++.+--
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 456899999999999999999974
No 89
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.83 E-value=0.0018 Score=47.99 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 142 TLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 142 ~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.++.|.++|.+ +++.++|..|+|||||.+.+..+.
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 34666776653 899999999999999999999763
No 90
>PRK06851 hypothetical protein; Provisional
Probab=96.82 E-value=0.069 Score=44.87 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=38.3
Q ss_pred chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665 138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT 196 (204)
Q Consensus 138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~ 196 (204)
|.-.-.+.|+ ++--+++.|.|..|+|||||++++......+ .++..++=|-+.+
T Consensus 201 G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dP 254 (367)
T PRK06851 201 GAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDP 254 (367)
T ss_pred cHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 5444444444 3446889999999999999999999987543 3666665555444
No 91
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.81 E-value=0.0011 Score=45.56 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
-..++|+|..|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4679999999999999999976
No 92
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.0039 Score=57.56 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=40.1
Q ss_pred ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.|.+++..+.+. .+-++|..|+||||+|+.+.+...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 46889999999999998877665 457999999999999999998754
No 93
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.0022 Score=54.54 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+..++.|.+++.++.+. -+-++|+.|+||||+|+.+-+...
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46789999999999988876654 588999999999999999887653
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.0033 Score=56.15 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=37.7
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.+++|.+..+..|.+++..+.+ ..+-++|..|+||||+|+.+-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~ 61 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKS 61 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678998889999999887765 56789999999999999998443
No 95
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.79 E-value=0.0011 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 96
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.79 E-value=0.0013 Score=50.69 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..+.|.|+|..|+|||||++.+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5788999999999999999999764
No 97
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.79 E-value=0.0011 Score=51.27 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999865
No 98
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.78 E-value=0.0011 Score=52.77 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999999743
No 99
>PRK09087 hypothetical protein; Validated
Probab=96.78 E-value=0.004 Score=48.78 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....+.|||..|+|||+|++.+++..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 34679999999999999999998764
No 100
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.77 E-value=0.0071 Score=48.43 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 140 KSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 140 ~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..-.+++..++..+ .-|-+.|..|+|||+||+.+.+..
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455566665543 345589999999999999998743
No 101
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.77 E-value=0.0032 Score=48.97 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=36.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCceEEEEEcCCCCChHhh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNN----LFEKVISAQVSQTPQIKKI 202 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i 202 (204)
.-.++.|+|.+|+|||||+.++.-...... .=..++|+.....++...+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl 70 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL 70 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH
Confidence 357999999999999999999876533221 0045789998888877554
No 102
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.77 E-value=0.0023 Score=49.27 Aligned_cols=53 Identities=26% Similarity=0.339 Sum_probs=35.1
Q ss_pred chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEE
Q 046665 138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQ 192 (204)
Q Consensus 138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~ 192 (204)
++.......++.|. +..++.+.|++|.|||.||-..--+.-..++|+..+++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34445566666666 567999999999999999988776544446788887774
No 103
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.76 E-value=0.0018 Score=52.44 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.++|..|+||||++..+.....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999887654
No 104
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0013 Score=50.78 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=27.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEE
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISA 191 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv 191 (204)
.-.|++|+|+.|+|||||.+-++.=+... +-.|||
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i 61 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITV 61 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEE
Confidence 45799999999999999999998654432 235665
No 105
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.76 E-value=0.0013 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+...
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 106
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.75 E-value=0.0012 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999964
No 107
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.75 E-value=0.0031 Score=52.35 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..++|.+..+..++-.+.+....-+.|.|..|.|||||++.+..-
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 457899999888877777777777889999999999999999754
No 108
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.0049 Score=55.20 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=39.3
Q ss_pred ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++|.+...+.|.+++..+. ...+-++|..|+||||+|+.+-+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999998766 4577899999999999999887654
No 109
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.74 E-value=0.005 Score=55.91 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=38.5
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++|.+..++.|.+++..+.+ +.+-++|..|+||||+|+.+-+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999987664 455799999999999999877754
No 110
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.0053 Score=53.81 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=39.3
Q ss_pred ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++|.+..++.|.+++..+.+. .+-++|+.|+||||+|+.+-+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999876654 57899999999999999988754
No 111
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.73 E-value=0.0013 Score=45.55 Aligned_cols=21 Identities=24% Similarity=0.665 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 046665 158 IGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 158 I~IvG~gGiGKTTLa~~v~~~ 178 (204)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 112
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.0013 Score=51.70 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.--.++|+|..|+|||||.+.|--
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999974
No 113
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.0015 Score=49.15 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 114
>PLN02796 D-glycerate 3-kinase
Probab=96.71 E-value=0.0014 Score=54.21 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..-+|+|.|..|+|||||++.+.....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 456899999999999999999998764
No 115
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.71 E-value=0.0014 Score=49.33 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4568999999999999999999743
No 116
>PRK05439 pantothenate kinase; Provisional
Probab=96.71 E-value=0.0033 Score=51.54 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+..-+|+|.|..|+||||||+.+..-.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999988744
No 117
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0014 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999964
No 118
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0015 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999865
No 119
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.69 E-value=0.0072 Score=55.68 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=39.4
Q ss_pred ccccchHHHHHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+..++.|+.+|.. ....++.++|+.|+||||+++.+.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999998852 2456899999999999999999998654
No 120
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.69 E-value=0.0017 Score=46.57 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 046665 158 IGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 158 I~IvG~gGiGKTTLa~~v~~~~ 179 (204)
|-++|..|+|||+||+.+....
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998754
No 121
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.68 E-value=0.0035 Score=48.56 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=31.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQ 198 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 198 (204)
.-.++-|.|.+|+|||||+.++....... =..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 35789999999999999999988765322 23567887655553
No 122
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.68 E-value=0.0036 Score=54.88 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=42.0
Q ss_pred cccchHHHHHHHHHhhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEE
Q 046665 135 HFESRKSTLKEILGSLSN-----HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQ 192 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~ 192 (204)
++.-..+-++++-.||.+ ...+++-+.|++|+||||.++.+.+... |+.+=|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 444455677888888863 2357899999999999999999998765 77777864
No 123
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.68 E-value=0.0015 Score=50.45 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4469999999999999999999864
No 124
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.68 E-value=0.0015 Score=49.23 Aligned_cols=26 Identities=46% Similarity=0.617 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45699999999999999999998653
No 125
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.68 E-value=0.0038 Score=57.56 Aligned_cols=48 Identities=27% Similarity=0.326 Sum_probs=39.3
Q ss_pred CccccchHHHHHHHHHhhcC----CC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSLSN----HN-FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~----~~-~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+..++||+.+++.|...|.+ .. ..++-|+|+.|.|||++++.|.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 35678999999999988753 23 35788999999999999999998753
No 126
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.0033 Score=53.10 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+.++|+++|.+|+||||++.++.....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999986554
No 127
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.0016 Score=50.35 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 128
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.67 E-value=0.0016 Score=50.59 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999964
No 129
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.66 E-value=0.0016 Score=51.38 Aligned_cols=25 Identities=20% Similarity=0.390 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999854
No 130
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.66 E-value=0.004 Score=49.07 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=40.5
Q ss_pred cCCCccccchHHHHHHHHHh----hcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 130 TEGFIHFESRKSTLKEILGS----LSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 130 ~~~~~~~~g~~~~~~~l~~~----L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
......++|.+.+++.|++- +......-+-+||..|.|||+|++.+.+....
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 33456789999988887764 44456777888999999999999999986543
No 131
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.0067 Score=53.44 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++|.+..++.|.+++..+.+. .+-++|..|+||||+|+.+-+..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999998876654 56799999999999999997654
No 132
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.0016 Score=50.11 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999965
No 133
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.65 E-value=0.0017 Score=50.77 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999999965
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.65 E-value=0.0014 Score=48.42 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+..-|+|+|..|+|||||.+.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3456999999999999999999985
No 135
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.64 E-value=0.0016 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999999865
No 136
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0017 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 137
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.63 E-value=0.0032 Score=55.86 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=38.9
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|.+...+.+.+++..+.+ +.+-++|+.|+||||+|+.+-+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999998876554 568899999999999999987764
No 138
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.63 E-value=0.0018 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-..++|+|+.|+|||||...+.--
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999999853
No 139
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.63 E-value=0.0017 Score=49.81 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999999874
No 140
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0081 Score=50.49 Aligned_cols=49 Identities=24% Similarity=0.311 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHhhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 134 IHFESRKSTLKEILGSLSN----HNFNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
..+.+|+.+++++...|.+ ..+.-+-|+|..|.|||+.++.|.+..+..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 3488999999999988752 333449999999999999999999986643
No 141
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.62 E-value=0.002 Score=54.70 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.-.+.|+|+|..|+|||||++.+.+...
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999998643
No 142
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.62 E-value=0.0018 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+...
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 143
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.0017 Score=51.06 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999865
No 144
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.62 E-value=0.0018 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999854
No 145
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.0018 Score=50.31 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 146
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.62 E-value=0.0018 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999875
No 147
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.0016 Score=50.17 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+++|+|..|+|||||++.+..-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999964
No 148
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.61 E-value=0.0018 Score=50.18 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-.+++|+|..|+|||||.+.+..-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999965
No 149
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.61 E-value=0.0019 Score=49.30 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999753
No 150
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.60 E-value=0.0019 Score=50.43 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45799999999999999999998654
No 151
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0019 Score=50.00 Aligned_cols=25 Identities=32% Similarity=0.768 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.. .+++|+|..|+|||||++.+..-
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 35 89999999999999999999864
No 152
>PRK06620 hypothetical protein; Validated
Probab=96.59 E-value=0.0019 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+.+-|+|+.|+|||+|++.+.+...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 6689999999999999999887643
No 153
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.0032 Score=54.77 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHH
Q 046665 134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.+++|.+...+.|.+.+..+.+. -+-++|+.|+||||+|+.+-.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 46789998888888888776654 788999999999999988865
No 154
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.0041 Score=52.16 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=39.6
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++|.+...+.+.+++.++.+ ..+-++|+.|+||||+|+.+-+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987665 488899999999999999997764
No 155
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.0076 Score=54.32 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=39.0
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.+++|.+..+..|.+++..+.+ +-+-++|..|+||||+|+.+-+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999987664 56899999999999999988765
No 156
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.57 E-value=0.0052 Score=50.62 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=38.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCC----ceEEEEEcCCCCChHhhh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLF----EKVISAQVSQTPQIKKIQ 203 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~iq 203 (204)
.-.++-|+|.+|+|||+|+-++.-+......+ ..++||+.-.+|+++.|.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~ 154 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE 154 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH
Confidence 46789999999999999999998653221111 369999999988877653
No 157
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.56 E-value=0.0055 Score=50.22 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=38.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCceEEEEEcCCCCChHhhh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNN----LFEKVISAQVSQTPQIKKIQ 203 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~iq 203 (204)
.-.++-|+|.+|+|||||+-++.-+..... .=..++||..-.+|+.+.+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~ 147 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM 147 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH
Confidence 357889999999999999999986643210 01269999999988887664
No 158
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.56 E-value=0.0061 Score=56.22 Aligned_cols=47 Identities=26% Similarity=0.233 Sum_probs=37.9
Q ss_pred ccccchHHHHHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.|..++.. ....++.++|+.|+||||||+.+.+...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467888888888887641 1345899999999999999999998765
No 159
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.56 E-value=0.0037 Score=53.10 Aligned_cols=47 Identities=28% Similarity=0.289 Sum_probs=36.6
Q ss_pred ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++.|.+..+++|.+.+. . ...+-+-++|+.|.|||+||+.+.+...
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 457888888877776542 1 1356789999999999999999998654
No 160
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.56 E-value=0.0064 Score=49.15 Aligned_cols=56 Identities=23% Similarity=0.367 Sum_probs=40.0
Q ss_pred HHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCC
Q 046665 143 LKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQ 198 (204)
Q Consensus 143 ~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 198 (204)
-.+|+..|.. ++..||+|.|.+|+||+||.-.+-.....+.|=--++=|.=|.+|+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T 94 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT 94 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCC
Confidence 3456666653 5778999999999999999999888776554433455555555554
No 161
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.56 E-value=0.0021 Score=50.46 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999864
No 162
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.56 E-value=0.0038 Score=50.22 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=35.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQ 198 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 198 (204)
.-+-++|+|-.|+|||||++.++++...+ +-+.++++-+.+..+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~ 111 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTR 111 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcH
Confidence 45789999999999999999999987754 125677888877653
No 163
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.55 E-value=0.002 Score=50.16 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999864
No 164
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.55 E-value=0.002 Score=50.42 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+....
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999754
No 165
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.55 E-value=0.0021 Score=49.36 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999965
No 166
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.55 E-value=0.0042 Score=47.55 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=29.7
Q ss_pred HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
....+..+...+-++..|.|.+|.||||+++.+.+.....
T Consensus 6 Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 6 QREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3444444544556788899999999999999998766543
No 167
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.54 E-value=0.0021 Score=51.27 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999964
No 168
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.54 E-value=0.002 Score=49.97 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999854
No 169
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.54 E-value=0.0038 Score=44.13 Aligned_cols=29 Identities=28% Similarity=0.227 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
.-.||.+.|.=|.|||||+|.+.....+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 45899999999999999999999877554
No 170
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.54 E-value=0.002 Score=42.49 Aligned_cols=24 Identities=42% Similarity=0.619 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
++.+.|.+|+||||++..+.....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~ 24 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALA 24 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988764
No 171
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.54 E-value=0.0022 Score=50.11 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999975
No 172
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.54 E-value=0.0048 Score=51.32 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=38.9
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|.+..++.+.+++..+.+ +.+-++|..|+||||+|+.+....
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987654 467899999999999998887664
No 173
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.54 E-value=0.0093 Score=48.74 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=28.5
Q ss_pred HHHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 144 KEILGSLS--NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 144 ~~l~~~L~--~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..+++.+. .+...+|+|+|.+|+|||||+..+.....
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444443 25688999999999999999999887654
No 174
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.53 E-value=0.0023 Score=52.77 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|+++|+.|+||||++.++.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 568999999999999999999987654
No 175
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.53 E-value=0.0022 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-.+++|+|..|+|||||++.+..-
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999865
No 176
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.53 E-value=0.0022 Score=50.95 Aligned_cols=25 Identities=44% Similarity=0.729 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
-.+++|+|..|+|||||++.+....
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998753
No 177
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.52 E-value=0.0052 Score=57.32 Aligned_cols=52 Identities=23% Similarity=0.322 Sum_probs=38.0
Q ss_pred cccchHHHHHHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665 135 HFESRKSTLKEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT 196 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~ 196 (204)
.++-|. .|.+.|.. .+.+++.|.|++|.|||||+.+..+. ++.++|+++...
T Consensus 15 ~~~~R~----rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~ 67 (903)
T PRK04841 15 NTVVRE----RLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDES 67 (903)
T ss_pred ccCcch----HHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcc
Confidence 445554 44454443 46789999999999999999998752 336999999743
No 178
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.52 E-value=0.0023 Score=49.41 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999975
No 179
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.52 E-value=0.0023 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+..-
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999964
No 180
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0023 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999865
No 181
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.50 E-value=0.0021 Score=50.42 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3468999999999999999999864
No 182
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0022 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
-..++|+|+.|.|||||.|.+..
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 37899999999999999999997
No 183
>PLN02348 phosphoribulokinase
Probab=96.50 E-value=0.0029 Score=53.28 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=25.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+..-+|+|.|..|+||||||+.+.+...
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999999998764
No 184
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.49 E-value=0.0039 Score=55.86 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=39.1
Q ss_pred ccccchHHHHHHHHHhhcCC-----CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNH-----NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~-----~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+..++.+..||.+. ..+++.++|+.|+||||+++.+.+...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 56789998999999998653 345799999999999999999997643
No 185
>PRK10646 ADP-binding protein; Provisional
Probab=96.49 E-value=0.0071 Score=44.38 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=24.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
-.||.+.|-=|.||||++|.+.....+.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4589999999999999999999987654
No 186
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.49 E-value=0.0024 Score=49.97 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 187
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.0044 Score=52.07 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+-.++.++|+.|+||||++.++-....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999987643
No 188
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.48 E-value=0.0024 Score=50.32 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998653
No 189
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.47 E-value=0.0023 Score=50.34 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999875
No 190
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.47 E-value=0.0073 Score=48.69 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
++.++|.++|.+|+||||++.++.....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3568999999999999998888876654
No 191
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.47 E-value=0.0041 Score=46.37 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 144 KEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 144 ~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..+.+++...+...|.++|.+|+|||||...+...
T Consensus 4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccC
Confidence 34555554444567889999999999999999754
No 192
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.47 E-value=0.0044 Score=54.63 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=37.5
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.+++|.+..+..+...+......-+-|+|..|+||||+|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 357899888888888776665666789999999999999999874
No 193
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.47 E-value=0.0021 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...|.|+|.+|+|||||++.+.++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 455699999999999999999864
No 194
>PRK10908 cell division protein FtsE; Provisional
Probab=96.47 E-value=0.0026 Score=49.50 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 195
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.46 E-value=0.0089 Score=50.13 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=39.8
Q ss_pred HHHHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCce-EEEEEcCCCC
Q 046665 142 TLKEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEK-VISAQVSQTP 197 (204)
Q Consensus 142 ~~~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~-~~wv~vs~~~ 197 (204)
...++++.+.. +.-.-+.|+|..|+|||||++.+.+..... +=+. ++|+.+.+..
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~ 175 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERP 175 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCC
Confidence 34557777764 445677999999999999999998876433 1233 5787877665
No 196
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.46 E-value=0.0084 Score=53.84 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=38.6
Q ss_pred ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++|.+..++.|.+.+..+.+. .+-++|..|+||||+|+.+.+..
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 46889999999999988876654 46789999999999999997754
No 197
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.46 E-value=0.0026 Score=49.00 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 198
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.46 E-value=0.0027 Score=48.51 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||.+.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998753
No 199
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.46 E-value=0.0066 Score=52.57 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=39.4
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCc
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFE 186 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~ 186 (204)
..++|+++.++.+...+.. -.-+-+.|.+|+|||+||+.+.....-...|.
T Consensus 20 ~~i~gre~vI~lll~aala--g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHcc--CCCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 4578999998888887763 34577899999999999999998654333454
No 200
>PLN02200 adenylate kinase family protein
Probab=96.46 E-value=0.0035 Score=49.42 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|.|.|+.|+||||+|+.+.+...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987543
No 201
>PRK14974 cell division protein FtsY; Provisional
Probab=96.45 E-value=0.012 Score=48.76 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+..+|.++|+.|+||||++.++.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999998888877654
No 202
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0026 Score=50.14 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 203
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0027 Score=48.35 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|.|||||++.+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456999999999999999999995
No 204
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.45 E-value=0.01 Score=48.20 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
-+-++|.+|.||||+|+.+....
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57799999999999997766543
No 205
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.45 E-value=0.0027 Score=45.98 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+-|-++|..|+|||||++.+...+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 457899999999999999999764
No 206
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.45 E-value=0.0027 Score=48.87 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999999753
No 207
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.44 E-value=0.0027 Score=49.21 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 208
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.44 E-value=0.0049 Score=53.93 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=39.0
Q ss_pred ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+..+..|.+.+..+. ..-+-++|..|+||||+|+.+.+..-
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899998888888776655 46788999999999999999988653
No 209
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.44 E-value=0.014 Score=47.47 Aligned_cols=94 Identities=10% Similarity=0.099 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 046665 4 VTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSH----------IEEWLISVDEVISEVRKLIEVEE 73 (204)
Q Consensus 4 v~~~l~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~el~~l~~~l~~~----------~~~wl~~vr~~~~d~ed~ld~~~ 73 (204)
|.+++++|-+.... ....+.-++.+++-++.+++.++.+++.+ .+.+..++-+.||++|.++|.+-
T Consensus 298 VdFlL~NLkdfq~r----ysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 298 VDFLLKNLKDFQGR----YSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHhhHHHHhcc----ccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 44566666555443 33445568999999999999999999976 67899999999999999998752
Q ss_pred hhccccccccccChhHHhHHHHHHHHHHHHHH
Q 046665 74 KSNNRCFNGLCPNLKTHYQLSKKAEMEVNAIV 105 (204)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~ 105 (204)
.... ..|| ..+..+.+...|.-++++++
T Consensus 374 ~k~~---P~Wc-l~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 374 SKSV---PHWC-LERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred cCCC---cHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 2111 1111 13344556666666666554
No 210
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.44 E-value=0.0028 Score=56.03 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
++..+|+|.|..|+||||||+.+....
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 467899999999999999999998753
No 211
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.44 E-value=0.0077 Score=52.69 Aligned_cols=48 Identities=31% Similarity=0.386 Sum_probs=33.9
Q ss_pred CccccchHHHHHHHHHh---hcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGS---LSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~---L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
-.++.|.+..++++.++ +.+ ...+-+-++|++|+|||+||+.+.+...
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 34577887766555443 322 1234588999999999999999998654
No 212
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.44 E-value=0.0027 Score=50.77 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 213
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.44 E-value=0.0027 Score=50.41 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999853
No 214
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.43 E-value=0.0026 Score=50.35 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+.--
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999854
No 215
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.43 E-value=0.0027 Score=49.37 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+..-.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999653
No 216
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.43 E-value=0.0029 Score=48.47 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998753
No 217
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.0044 Score=55.47 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=38.5
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|.+..++.|.+++..+.+ .-+-++|+.|+||||+|+.+-+..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999998877665 458899999999999998887654
No 218
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.42 E-value=0.0029 Score=48.68 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 219
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.42 E-value=0.0028 Score=50.45 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999965
No 220
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.42 E-value=0.0031 Score=47.18 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999965
No 221
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.42 E-value=0.0059 Score=46.24 Aligned_cols=35 Identities=23% Similarity=0.130 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...++.+... .-..+.|+|..|+|||||++.+..-
T Consensus 14 ~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 14 QAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3334443333 3578999999999999999998864
No 222
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.40 E-value=0.0029 Score=50.19 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|.|||||++.+.-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 456899999999999999999964
No 223
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.40 E-value=0.0031 Score=47.48 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999753
No 224
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.40 E-value=0.0031 Score=46.88 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999753
No 225
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.39 E-value=0.0028 Score=48.54 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
++++|+|..|+|||||++.++-
T Consensus 23 g~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999974
No 226
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.39 E-value=0.0027 Score=50.57 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.-.++++||-.|+|||||++.+-.=.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 567899999999999999999986544
No 227
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.39 E-value=0.003 Score=49.72 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999964
No 228
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.39 E-value=0.0059 Score=52.47 Aligned_cols=47 Identities=26% Similarity=0.382 Sum_probs=36.1
Q ss_pred ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++.|.+..++.|.+.+. . ....-+.++|..|.|||+||+.+.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 456788888887777652 1 1345678999999999999999999654
No 229
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.39 E-value=0.0032 Score=45.73 Aligned_cols=26 Identities=38% Similarity=0.594 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45789999999999999999998753
No 230
>PLN02165 adenylate isopentenyltransferase
Probab=96.38 E-value=0.0033 Score=51.86 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=25.5
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 150 LSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 150 L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+.+..-.+|.|+|+.|+||||||..+....
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 345566799999999999999999998764
No 231
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.38 E-value=0.015 Score=43.99 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=27.9
Q ss_pred HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 145 EILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 145 ~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+.+.+..+++ ..+-++|..|+||||+|+.+-+..-
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 35555555555 6789999999999999998877643
No 232
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.38 E-value=0.003 Score=50.34 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+.-.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4578999999999999999999964
No 233
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.38 E-value=0.0083 Score=52.47 Aligned_cols=47 Identities=23% Similarity=0.343 Sum_probs=36.7
Q ss_pred ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++.|.+..++.|...+. . ...+-|-++|+.|.|||++|+.+++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 446788888888777653 1 1345688999999999999999999764
No 234
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.38 E-value=0.0031 Score=48.74 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.++...
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999999753
No 235
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.38 E-value=0.003 Score=50.02 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999864
No 236
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.38 E-value=0.0029 Score=49.81 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999975
No 237
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.38 E-value=0.0033 Score=46.60 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 238
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.003 Score=48.54 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccC
Confidence 45699999999999999999998754
No 239
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.37 E-value=0.0031 Score=49.54 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 240
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.37 E-value=0.003 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999964
No 241
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.36 E-value=0.0031 Score=49.90 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999864
No 242
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.36 E-value=0.0031 Score=49.74 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999964
No 243
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.36 E-value=0.0032 Score=49.60 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999964
No 244
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0033 Score=46.97 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 245
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.36 E-value=0.0032 Score=50.23 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+.-.
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999853
No 246
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.35 E-value=0.011 Score=47.08 Aligned_cols=41 Identities=24% Similarity=0.426 Sum_probs=29.6
Q ss_pred HHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 142 TLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 142 ~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
....++..|.. ++..+|+|.|.+|+||+||.-.+-.....+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34455665543 467899999999999999999888776543
No 247
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.015 Score=52.02 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=39.3
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+..++.|.+++..+.+ +.+-++|..|+||||+|+.+.+...
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999998877654 4567999999999999999987653
No 248
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=96.35 E-value=0.0025 Score=45.60 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
-|.|+|.+|+|||||++.+.+..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 37899999999999999987653
No 249
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.35 E-value=0.0054 Score=53.20 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+||+++|..|+||||++.++.....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999997653
No 250
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.34 E-value=0.0031 Score=51.51 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999964
No 251
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0033 Score=50.53 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999864
No 252
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.34 E-value=0.0035 Score=47.06 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998753
No 253
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0036 Score=46.68 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45689999999999999999998753
No 254
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.33 E-value=0.0034 Score=47.32 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999653
No 255
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.33 E-value=0.003 Score=50.61 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4569999999999999999999964
No 256
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.33 E-value=0.0059 Score=46.03 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=27.3
Q ss_pred HHHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 143 LKEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 143 ~~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+.++..++.. .....|.++|..|+|||||++.+..+
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456665532 44567889999999999999998864
No 257
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.33 E-value=0.0037 Score=47.76 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....|+|+|.+|+|||||.+.+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 45689999999999999999998764
No 258
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.33 E-value=0.0068 Score=49.79 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.-..|.++|+.|+||||+++.+....+
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999987654
No 259
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.33 E-value=0.0033 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|+|||||++.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999974
No 260
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.33 E-value=0.013 Score=48.57 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=28.9
Q ss_pred HHHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 144 KEILGSLS--NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 144 ~~l~~~L~--~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..|++.+. .++..+|+|.|..|+|||||+..+.....
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44555554 35678999999999999999999877655
No 261
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.32 E-value=0.0035 Score=48.63 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999864
No 262
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.32 E-value=0.0036 Score=48.00 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999865
No 263
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.32 E-value=0.0033 Score=49.11 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+..-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999964
No 264
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.32 E-value=0.0038 Score=49.61 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+..+.+|+|..|+|||||+..|+--
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999843
No 265
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.32 E-value=0.0032 Score=50.79 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 266
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.32 E-value=0.0034 Score=50.11 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+.--
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4578999999999999999999854
No 267
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=96.31 E-value=0.0035 Score=50.44 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4579999999999999999999864
No 268
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.31 E-value=0.0033 Score=50.46 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 269
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.31 E-value=0.0028 Score=45.05 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 158 IGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 158 I~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
+-++|..|+||||||+.+-.....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 568999999999999999987653
No 270
>PRK12377 putative replication protein; Provisional
Probab=96.31 E-value=0.005 Score=48.94 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=30.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS 194 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 194 (204)
+..-+.++|..|+|||+||..+.+...-+ .-.+++++++
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~ 138 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP 138 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH
Confidence 34678999999999999999999987633 3346777764
No 271
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0036 Score=48.26 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998653
No 272
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.31 E-value=0.0034 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999865
No 273
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.0036 Score=49.03 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999865
No 274
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.17 Score=46.34 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=36.6
Q ss_pred ccccchHHHHHHHHHhhc---------CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLS---------NHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~---------~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|.+..++.+.+.+. +..++++-.+|+.|||||-||+.+-...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L 545 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL 545 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh
Confidence 457899998888888764 1246788889999999999999887643
No 275
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.30 E-value=0.0035 Score=49.91 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.+....
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999753
No 276
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0036 Score=49.69 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999864
No 277
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.30 E-value=0.0033 Score=50.54 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3468999999999999999999864
No 278
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.29 E-value=0.0035 Score=48.11 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+++.|+|..|.|||||.+.|.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 89999999999999999999754
No 279
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.29 E-value=0.0036 Score=49.88 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.+..-.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999753
No 280
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.29 E-value=0.0036 Score=49.16 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999975
No 281
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.29 E-value=0.0035 Score=50.86 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999864
No 282
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.0081 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+..+|+++|..|+||||++.++-..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999988654
No 283
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.018 Score=48.97 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=36.8
Q ss_pred ccccchHHHHHHHHHhhcCCC----------ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 134 IHFESRKSTLKEILGSLSNHN----------FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~----------~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..++|.+..++.|.+++..+. .+-+-++|+.|+||||+|+.+-..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 457899998999999887643 456789999999999999998654
No 284
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.28 E-value=0.0036 Score=48.83 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+....
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999753
No 285
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.27 E-value=0.0038 Score=50.08 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4578999999999999999999864
No 286
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.27 E-value=0.0043 Score=46.79 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....+|.|.|..|+||||||+.+.....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999997653
No 287
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.27 E-value=0.0035 Score=51.83 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45789999999999999999998753
No 288
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=96.27 E-value=0.0035 Score=48.53 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
-.+++|+|..|+|||||++.|.
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHhe
Confidence 4589999999999999999986
No 289
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.27 E-value=0.0076 Score=49.58 Aligned_cols=50 Identities=22% Similarity=0.164 Sum_probs=37.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCceEEEEEcCCCCChHhhh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN----NLFEKVISAQVSQTPQIKKIQ 203 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~iq 203 (204)
.-+++-|+|..|+|||+|+.++.-..... ..=..++||+.-.+|+++.|.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~ 148 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR 148 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH
Confidence 35788999999999999998876432211 112468999999999888765
No 290
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.26 E-value=0.004 Score=52.93 Aligned_cols=27 Identities=30% Similarity=0.217 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+-+|+|.|..|+|||||++.+..-..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~ 237 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR 237 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999975443
No 291
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.0039 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|.|||||++.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999995
No 292
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.26 E-value=0.004 Score=48.45 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
.-.+++++|..|+|||||.+.|+.-.+.
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~ 55 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVRP 55 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4578999999999999999999976554
No 293
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.26 E-value=0.004 Score=48.27 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999999653
No 294
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.25 E-value=0.0038 Score=49.52 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999864
No 295
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.25 E-value=0.0038 Score=49.54 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 296
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.25 E-value=0.004 Score=48.29 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
..+++|+|+.|.|||||.+.|.
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3799999999999999999987
No 297
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=96.25 E-value=0.0037 Score=49.73 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999998653
No 298
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.0067 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...+|+|+|.+|+||||++.++....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999998887653
No 299
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=96.25 E-value=0.004 Score=49.88 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+..-
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4579999999999999999999853
No 300
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.004 Score=48.83 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999999653
No 301
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.24 E-value=0.004 Score=48.19 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999965
No 302
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.24 E-value=0.0038 Score=50.08 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|.|||||++.+..
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999975
No 303
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.24 E-value=0.0074 Score=53.70 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=39.5
Q ss_pred ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+...+.|.+++..+.+. .+-++|..|+||||+|+.+-+..-
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999876654 578999999999999999887543
No 304
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.24 E-value=0.0041 Score=48.55 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.+..-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 44689999999999999999998653
No 305
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.23 E-value=0.0038 Score=49.46 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4569999999999999999999863
No 306
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.23 E-value=0.004 Score=50.02 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999864
No 307
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.23 E-value=0.0041 Score=49.41 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4569999999999999999999864
No 308
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.23 E-value=0.004 Score=50.28 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999965
No 309
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.22 E-value=0.004 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999999865
No 310
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.22 E-value=0.0042 Score=49.58 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||.+.+.--.
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45699999999999999999999654
No 311
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.22 E-value=0.0042 Score=49.82 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+....
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999999753
No 312
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.22 E-value=0.0041 Score=49.48 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 27 TGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 313
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.22 E-value=0.0065 Score=50.12 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=34.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKK 201 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 201 (204)
-+++-|+|.+|+||||||-++.-..... -..++||..-..++...
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~~ 99 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPVY 99 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHHH
Confidence 5688899999999999999987654322 35688988877766543
No 314
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.22 E-value=0.0039 Score=49.48 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|+|||||++.+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999984
No 315
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.22 E-value=0.0092 Score=51.04 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|.++|..|+||||++.++-....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998876554
No 316
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.21 E-value=0.0041 Score=49.44 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+.-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 317
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.21 E-value=0.015 Score=48.63 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=40.2
Q ss_pred CccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...++|.+.....+...+..+.+ .-+-++|..|+||||||+.+-+..-
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 35689999999999999887654 5688999999999999998877643
No 318
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.21 E-value=0.0041 Score=50.30 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.+..-.
T Consensus 32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 32 RGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhccc
Confidence 35699999999999999999999653
No 319
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.21 E-value=0.0087 Score=43.89 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=29.2
Q ss_pred chHHHHHHHHHhhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 138 SRKSTLKEILGSLS---NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 138 g~~~~~~~l~~~L~---~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
|.+.-.+.|.+++. ......|+++|+.|+|||||...+..+..
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 44444455544432 12345688999999999999999987644
No 320
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.20 E-value=0.01 Score=49.20 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=41.5
Q ss_pred CccccchHHHHHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...++|.++.+++|++.+.. ..-+|+-+.|+-|.|||||++.+.+-.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35789999999999999853 3568999999999999999999988655
No 321
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.20 E-value=0.0042 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+.--
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999854
No 322
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.0043 Score=49.48 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 32 RNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999964
No 323
>PRK05642 DNA replication initiation factor; Validated
Probab=96.20 E-value=0.008 Score=47.32 Aligned_cols=38 Identities=16% Similarity=0.349 Sum_probs=28.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS 194 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 194 (204)
...+-|+|..|+|||.|++.+++....+. ..++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeHH
Confidence 46789999999999999999988654221 235666653
No 324
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.20 E-value=0.0042 Score=49.54 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999865
No 325
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.20 E-value=0.0097 Score=50.04 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 139 RKSTLKEILGSLS---NHNFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 139 ~~~~~~~l~~~L~---~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
..++.+.+..... -....+|+|+|..|+|||||+..+....+.
T Consensus 186 TpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~ 231 (366)
T PRK14489 186 TPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIA 231 (366)
T ss_pred CHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 3345556555432 125779999999999999999999987654
No 326
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.0043 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|.|||||++.+..
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999984
No 327
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.19 E-value=0.006 Score=42.69 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 046665 158 IGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 158 I~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
|.+.|.||+||||++..+.....
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~ 24 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLA 24 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999987654
No 328
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.19 E-value=0.0081 Score=53.64 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=39.4
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++|.+..++.|.+++..+.+ .-+-++|+.|+||||+|+.+-+..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4688999999999999887664 468899999999999999997754
No 329
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.19 E-value=0.0039 Score=54.42 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-.+++|||-.|+||||||+.+-.=
T Consensus 317 GE~lglVGeSGsGKSTlar~i~gL 340 (539)
T COG1123 317 GETLGLVGESGSGKSTLARILAGL 340 (539)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 330
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.19 E-value=0.0045 Score=47.69 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~ 176 (204)
.+++|+|..|+|||||...++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 499999999999999999995
No 331
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.0047 Score=48.35 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
+-..|+|+|..|.|||||.+.+..
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Confidence 456899999999999999999986
No 332
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0043 Score=51.71 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999864
No 333
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0045 Score=49.10 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|.|||||++.+.-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999974
No 334
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0045 Score=49.71 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+..-
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999999864
No 335
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.17 E-value=0.0041 Score=49.17 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999999986
No 336
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0045 Score=48.32 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+..-
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999864
No 337
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.17 E-value=0.0044 Score=51.65 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl~ 55 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998643
No 338
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.0046 Score=49.00 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|+|||||.+.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999985
No 339
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.0044 Score=49.15 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999964
No 340
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.0045 Score=51.31 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.|..-.
T Consensus 32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 32 EGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 45689999999999999999998753
No 341
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.16 E-value=0.011 Score=46.40 Aligned_cols=41 Identities=27% Similarity=0.291 Sum_probs=31.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH-HHhccCCCCceEEEEEcCCCC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVA-GQAKGNNLFEKVISAQVSQTP 197 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~-~~~~~~~~F~~~~wv~vs~~~ 197 (204)
.-+++.|+|..|+|||||+.++. +..+. =..++|++..+++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~~ 65 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENTS 65 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCCH
Confidence 46799999999999999999984 43331 2468888887765
No 342
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.16 E-value=0.0048 Score=48.09 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+..-
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999865
No 343
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.16 E-value=0.0048 Score=47.86 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+...
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999999864
No 344
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.0076 Score=51.33 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..+|.++|.+|+||||++.++-...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998643
No 345
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.0047 Score=48.84 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999864
No 346
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.15 E-value=0.0046 Score=49.84 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 347
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.15 E-value=0.0085 Score=49.36 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=33.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIK 200 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 200 (204)
.-+++-|+|..|+||||||-++....... =..++||..-+.++..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV 98 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH
Confidence 34799999999999999999877654322 3557788776666543
No 348
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.15 E-value=0.0084 Score=48.12 Aligned_cols=41 Identities=27% Similarity=0.253 Sum_probs=28.8
Q ss_pred chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
|......+.+..+....-++|.|.|..|+||||+++.+.+.
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 43333333444444556678999999999999999987654
No 349
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.14 E-value=0.0048 Score=48.89 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3468999999999999999999964
No 350
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.14 E-value=0.0092 Score=55.50 Aligned_cols=46 Identities=28% Similarity=0.415 Sum_probs=39.7
Q ss_pred cccchHHHHHHHHHhhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 135 HFESRKSTLKEILGSLSN---HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~~---~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+++||+.+.+.|...+.+ +...++.+.|..|||||+|++.|.....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~ 49 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPIT 49 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHh
Confidence 368999999999998863 5677999999999999999999998644
No 351
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.14 E-value=0.0083 Score=49.78 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=36.2
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..++|.+..+..+.-.+.+.+..-+-+.|..|.||||||+.+-+-
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~l 52 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAAL 52 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 457899988887776555555566899999999999999999654
No 352
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.14 E-value=0.0068 Score=50.35 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHH
Q 046665 137 ESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKE 174 (204)
Q Consensus 137 ~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~ 174 (204)
.+|..+..--+++|+++++..+++.|.+|.|||-||-.
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALa 264 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALA 264 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHH
Confidence 45666777888899999999999999999999988753
No 353
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.13 E-value=0.0045 Score=48.73 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
..+.+|+|..|.|||||.+.|+
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 354
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.12 E-value=0.0098 Score=50.64 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHhhcCC--------------CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 134 IHFESRKSTLKEILGSLSNH--------------NFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~--------------~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
..++|.+..++.+.-.+.++ ..+-|-++|+.|+||||||+.+-.....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44778888777765544321 2467899999999999999999987653
No 355
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.12 E-value=0.042 Score=45.37 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 142 TLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 142 ~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....++.+|.. -+-|-+.|..|+||||||+.+.....
T Consensus 53 ~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 53 TTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred HHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHHC
Confidence 44556666653 34599999999999999999988654
No 356
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.12 E-value=0.0047 Score=48.49 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999999864
No 357
>PRK08116 hypothetical protein; Validated
Probab=96.12 E-value=0.0074 Score=48.54 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS 194 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 194 (204)
.-+-++|..|+|||.||..|++....+ --.+++++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~~ 151 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFP 151 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHH
Confidence 358899999999999999999986533 2346777654
No 358
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.12 E-value=0.0048 Score=49.49 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.+....
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999999753
No 359
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.11 E-value=0.0049 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+..-
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 360
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0048 Score=49.17 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999853
No 361
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.11 E-value=0.005 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4579999999999999999999864
No 362
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.11 E-value=0.0085 Score=44.76 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=28.7
Q ss_pred cchHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 137 ESRKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 137 ~g~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+|....+.++++.+.. ....-|-|+|-.|+||+.+|+.|++..
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4555556666665432 223455599999999999999999953
No 363
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.0052 Score=48.64 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3469999999999999999999864
No 364
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.10 E-value=0.011 Score=50.84 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
.+.+|.++|..|+||||++.++......
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4789999999999999999999876653
No 365
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=96.10 E-value=0.005 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 21 ~Gei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 21 AGEILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4569999999999999999998853
No 366
>PF13245 AAA_19: Part of AAA domain
Probab=96.10 E-value=0.01 Score=38.18 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=19.6
Q ss_pred CccEEEEEcCCCCcHH-HHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKT-MLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKT-TLa~~v~~~~ 179 (204)
+-++..|.|.+|.||| |+++.+.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888999999999 6666665554
No 367
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.021 Score=51.30 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++|.+...+.|.+++..+.+ ..+-++|..|+||||+|+.+-...
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999987765 457899999999999998877653
No 368
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.005 Score=49.61 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+...
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 51 (275)
T PRK13639 27 KGEMVALLGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999864
No 369
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.0051 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+.--
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999964
No 370
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.09 E-value=0.0051 Score=49.87 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.+....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999753
No 371
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.09 E-value=0.0047 Score=49.45 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||.+.+....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34699999999999999999998753
No 372
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.09 E-value=0.0054 Score=48.59 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 28 KNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999853
No 373
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.09 E-value=0.0052 Score=50.89 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+..-.
T Consensus 40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 40 RGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 45689999999999999999999753
No 374
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.09 E-value=0.0047 Score=52.91 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.++|.++|++|+||||++.++-...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999888876544
No 375
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.08 E-value=0.0056 Score=47.06 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999864
No 376
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0052 Score=49.56 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+...
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999965
No 377
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.08 E-value=0.012 Score=46.30 Aligned_cols=39 Identities=21% Similarity=0.079 Sum_probs=25.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
-.++.|.|..|.|||||+.++......+ . ..+++++...
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g-~~~~yi~~e~ 62 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN-G-YSVSYVSTQL 62 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEeCCC
Confidence 4599999999999999975554433211 1 3356666443
No 378
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.08 E-value=0.012 Score=49.03 Aligned_cols=49 Identities=18% Similarity=0.049 Sum_probs=37.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc---C-CCCceEEEEEcCCCCChHhhh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKG---N-NLFEKVISAQVSQTPQIKKIQ 203 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~---~-~~F~~~~wv~vs~~~~~~~iq 203 (204)
-+++=|+|..|+|||+|+-+++=+... . ..-..++||.--.+|+++.|.
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~ 178 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV 178 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH
Confidence 468889999999999999988643221 1 112468999999999988765
No 379
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.0054 Score=48.61 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+.--
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3568999999999999999999854
No 380
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.0053 Score=49.80 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|+|||||++.+.-
T Consensus 64 ~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 64 SKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999999986
No 381
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.08 E-value=0.0055 Score=47.65 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999964
No 382
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0054 Score=49.78 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||.+.+....
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999653
No 383
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.07 E-value=0.0054 Score=48.66 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999753
No 384
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.006 Score=44.76 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
-.+++|+|..|.|||||++.+....
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4799999999999999999998753
No 385
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.07 E-value=0.0056 Score=48.15 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999999964
No 386
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.07 E-value=0.007 Score=45.73 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 152 NHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.+...-|+|+|..|+|||||.+.+.+.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 346677999999999999999999975
No 387
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.06 E-value=0.01 Score=48.96 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCceEEEEEcCCCCChHhhh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN----NLFEKVISAQVSQTPQIKKIQ 203 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~iq 203 (204)
.-.++-|+|..|+|||||+.++.-..... ..-..++|+.-...|+.+.|.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~ 148 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL 148 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHH
Confidence 36799999999999999999987642211 112467999988888876553
No 388
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.06 E-value=0.0054 Score=49.10 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999875
No 389
>PRK09183 transposase/IS protein; Provisional
Probab=96.06 E-value=0.0054 Score=49.09 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...+.|+|..|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3457799999999999999997653
No 390
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.06 E-value=0.0055 Score=49.14 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 391
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.05 E-value=0.0056 Score=45.67 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
---|+|.|+.|+||+||.+.|++=
T Consensus 29 Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhc
Confidence 346999999999999999999974
No 392
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=96.05 E-value=0.0056 Score=49.24 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+.--
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999999754
No 393
>PRK06851 hypothetical protein; Provisional
Probab=96.05 E-value=0.014 Score=48.87 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=35.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI 199 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 199 (204)
+.-+++-|.|.+|+|||||++.+.+....+ .|+...+.|-+.+-++
T Consensus 28 ~~~~~~il~G~pGtGKStl~~~i~~~~~~~-g~~Ve~~~~~~d~~sl 73 (367)
T PRK06851 28 GANRIFILKGGPGTGKSTLMKKIGEEFLEK-GYDVEFLHCSSDNDSL 73 (367)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEcCCCCCce
Confidence 456899999999999999999999987543 4777677776655443
No 394
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.05 E-value=0.013 Score=43.05 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=30.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCce--EEEEE
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEK--VISAQ 192 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~--~~wv~ 192 (204)
.--|+.+.|+.|+||+||.-.+--..... |+| .+|+.
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~--F~~~G~~~l~ 65 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQ--FSCTGELWLN 65 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhcccC--cceeeEEEEC
Confidence 45689999999999999999998887755 776 67874
No 395
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.04 E-value=0.0057 Score=49.29 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 27 KGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999999753
No 396
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0058 Score=49.33 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+...
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999864
No 397
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.04 E-value=0.0057 Score=48.16 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+...
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999964
No 398
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.03 E-value=0.0057 Score=48.86 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+..-.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998643
No 399
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.015 Score=46.95 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=39.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhhh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQ 203 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~iq 203 (204)
.-+++=|+|+.|+||||||-+++=...-. -..++||.--..|++..+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~ 106 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAK 106 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHH
Confidence 35789999999999999999988765532 4479999999999988765
No 400
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.03 E-value=0.0053 Score=50.90 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+..-.
T Consensus 41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 41 AGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45689999999999999999999643
No 401
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.02 E-value=0.0054 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
-..+++.|+.|+|||||.+.|--
T Consensus 31 Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 31 GEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999963
No 402
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.02 E-value=0.0059 Score=49.51 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+....
T Consensus 62 ~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 62 KGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999753
No 403
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.0061 Score=48.32 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+.-.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 29 RGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999864
No 404
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.01 E-value=0.011 Score=49.21 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=38.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCceEEEEEcCCCCChHhhh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN----NLFEKVISAQVSQTPQIKKIQ 203 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~iq 203 (204)
.-.++-|+|.+|+|||+|+..++-..... ..-..++||.--.+|+++.|.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~ 175 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI 175 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH
Confidence 35788899999999999999888543211 112369999999999988765
No 405
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.00 E-value=0.006 Score=50.35 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+..-.
T Consensus 51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 51 KNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999753
No 406
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.00 E-value=0.0058 Score=51.09 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 407
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.00 E-value=0.0061 Score=48.68 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 32 QSKVTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc
Confidence 45799999999999999999999753
No 408
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.00 E-value=0.006 Score=49.50 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999999964
No 409
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.99 E-value=0.0061 Score=48.93 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+.-.
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 410
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.97 E-value=0.0065 Score=46.54 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999875
No 411
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.97 E-value=0.0062 Score=49.45 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+...
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4568999999999999999999965
No 412
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=95.97 E-value=0.0062 Score=50.96 Aligned_cols=24 Identities=33% Similarity=0.650 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-.+++|+|..|+|||||++.+..-
T Consensus 23 Gei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 23 QGVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999865
No 413
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.0063 Score=47.02 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.-.|.+|+|+.|.|||||.+.+.-...
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCccC
Confidence 346999999999999999999987543
No 414
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.96 E-value=0.0071 Score=45.30 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
++...|.|+|..|+|||||...+....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~ 42 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRK 42 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 456688999999999999999998763
No 415
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.95 E-value=0.012 Score=44.72 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
-..+-++|..|.|||||.|.+|..++..
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt 55 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT 55 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC
Confidence 4568899999999999999999887643
No 416
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.95 E-value=0.016 Score=49.39 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=37.0
Q ss_pred ccccchHHHHHHHHHhhcCC--------------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNH--------------NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~--------------~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.+..++.++ ..+-|-++|+.|+||||||+.+-....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789888888877766320 146789999999999999999988654
No 417
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.95 E-value=0.02 Score=45.43 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=34.9
Q ss_pred HHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665 142 TLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS 194 (204)
Q Consensus 142 ~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 194 (204)
.+..+.++..+ .....+-++|.+|+|||+||..+.+....+ -..+++++++
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~~ 136 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITVA 136 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEHH
Confidence 44455555433 234578899999999999999999986533 2345666654
No 418
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=95.94 E-value=0.0065 Score=50.38 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.|..-.
T Consensus 46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 46 EGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45689999999999999999998643
No 419
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.94 E-value=0.0068 Score=48.52 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 41 EKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999854
No 420
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.94 E-value=0.012 Score=45.94 Aligned_cols=41 Identities=27% Similarity=0.351 Sum_probs=29.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH-HHhcc-CCCCceEEEEEcCCCC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVA-GQAKG-NNLFEKVISAQVSQTP 197 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~-~~~~~-~~~F~~~~wv~vs~~~ 197 (204)
.-+++.|.|.+|+|||+|+.++. +..+. . +.++||+...++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~g---e~vlyvs~ee~~ 60 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFG---EKVLYVSFEEPP 60 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESSS-H
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcC---CcEEEEEecCCH
Confidence 45799999999999999988754 54342 2 347888886655
No 421
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.94 E-value=0.012 Score=45.77 Aligned_cols=39 Identities=28% Similarity=0.502 Sum_probs=27.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEE
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQ 192 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~ 192 (204)
....+-|+|..|+|||.|.+.+++.......=..+++++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 356789999999999999999999754321212355655
No 422
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.0066 Score=45.57 Aligned_cols=24 Identities=38% Similarity=0.674 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-.|.+|||-.|+|||||.+.+-..
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~r 55 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGR 55 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhcc
Confidence 469999999999999999988765
No 423
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.93 E-value=0.013 Score=45.91 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=38.1
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.+++|.++.++.+--.-.+++..-+-|.||+|+||||-+..+-+.
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHH
Confidence 568999999988888888889999999999999999966665543
No 424
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.93 E-value=0.021 Score=52.33 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=34.7
Q ss_pred cccchHHHHHHHHHhhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 135 HFESRKSTLKEILGSLSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.++|.+..++.|.+.+.. ....++-++|+.|+|||+||+.+....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 456777777777776641 124578899999999999999999865
No 425
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.93 E-value=0.02 Score=51.36 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=38.6
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEE
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISA 191 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv 191 (204)
..++|.+...+.+...+.... . +-++|+.|+|||||++.+.+..... .|...+++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~-~-~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~ 72 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR-N-VLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVY 72 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC-C-EEEECCCCCCHHHHHHHHHHHcCch-hheeEEEE
Confidence 456788887777777666543 4 4499999999999999999865422 34444433
No 426
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.93 E-value=0.012 Score=44.05 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=26.6
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.+++.+.. ..-.-|.|.|+.|+|||||.+.+.+.
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~ 37 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNG 37 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSS
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHHHHhhhc
Confidence 34555544 55667899999999999999999865
No 427
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.93 E-value=0.011 Score=54.26 Aligned_cols=47 Identities=28% Similarity=0.289 Sum_probs=36.1
Q ss_pred ccccchHHHHHHHHHhhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSN-------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++.|.+..++.|.+++.- ...+-|-++|..|+||||||+.+.+...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 3467888888887776521 1245688999999999999999998654
No 428
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.93 E-value=0.0059 Score=55.51 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
+.-..|+|+|..|+|||||+|.+-.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999875
No 429
>PTZ00035 Rad51 protein; Provisional
Probab=95.93 E-value=0.019 Score=47.75 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=36.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc---CC-CCceEEEEEcCCCCChHhhh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG---NN-LFEKVISAQVSQTPQIKKIQ 203 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~iq 203 (204)
.-.++-|+|..|+|||||+.++.-.... .. .=..++||.-..+|+.+.|.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~ 170 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV 170 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH
Confidence 3578999999999999999998754331 00 11347799988888877653
No 430
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.0067 Score=48.08 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999864
No 431
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.92 E-value=0.0063 Score=53.55 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..-..++|+|..|+|||||++.+..-
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999854
No 432
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.91 E-value=0.007 Score=48.02 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-..+.++|..|+||||+.+.|+.-
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrL 50 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRL 50 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcc
Confidence 3457889999999999999999864
No 433
>PRK09354 recA recombinase A; Provisional
Probab=95.91 E-value=0.013 Score=48.70 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKK 201 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 201 (204)
-+++-|+|..|+|||||+-++.-..... =..++||..-.+++...
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~~ 104 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPVY 104 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHHH
Confidence 5688999999999999999988665422 35688998887777543
No 434
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.91 E-value=0.0074 Score=46.26 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.-.+++|+|..|.|||||++.+..-..
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 457899999999999999999987543
No 435
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.91 E-value=0.014 Score=50.46 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=39.0
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++|.+..+..|.+++..+.+ ..+-++|..|+||||+|+.+-+..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4678999999999999987665 567899999999999999887653
No 436
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.90 E-value=0.0071 Score=48.98 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+..-
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999999965
No 437
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.90 E-value=0.0084 Score=50.21 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
..+..++|||+.|.|||.+|+.|++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999998654
No 438
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.90 E-value=0.0068 Score=49.14 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 64 ENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999854
No 439
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.90 E-value=0.0071 Score=49.57 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+..-
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999964
No 440
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=95.89 E-value=0.0073 Score=46.90 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+...
T Consensus 30 ~G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 30 PGEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999999854
No 441
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.89 E-value=0.007 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+.--
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999999864
No 442
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.89 E-value=0.0073 Score=48.81 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.+....
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~ 57 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999999653
No 443
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.89 E-value=0.013 Score=54.11 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=39.7
Q ss_pred ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+..++.|.+++..+.+. .+-++|..|+||||+|+.+-+...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999876654 578999999999999999977654
No 444
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.88 E-value=0.0078 Score=52.64 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|+|.|.+|+||||+++.+.+...
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~ 309 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLG 309 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457999999999999999999998764
No 445
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.88 E-value=0.011 Score=36.47 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 046665 157 MIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~ 177 (204)
+..|.|..|+|||||.-.+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999977654
No 446
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=95.88 E-value=0.014 Score=43.92 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.-|.++|.+|+|||||+..+...
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~ 40 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLG 40 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Confidence 3345889999999999999999653
No 447
>PRK06526 transposase; Provisional
Probab=95.88 E-value=0.0076 Score=48.11 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..-+-++|.+|+|||+||..+.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4458999999999999999998764
No 448
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.88 E-value=0.0072 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+.--
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4469999999999999999999964
No 449
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=95.87 E-value=0.011 Score=48.00 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=26.3
Q ss_pred HHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 144 KEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 144 ~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+.|..+|.+ ++++++|..|+|||||++.+....
T Consensus 153 ~~L~~~L~~---k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 153 DELREYLKG---KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred HHHHhhhcc---ceEEEECCCCCCHHHHHHHHhchh
Confidence 455555543 789999999999999999988653
No 450
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.015 Score=48.92 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=27.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQV 193 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 193 (204)
..++|.++|+.|+||||++..+......++ ..+.+|+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lIta 242 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITT 242 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC
Confidence 467999999999999999999887653221 23445544
No 451
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.84 E-value=0.017 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=16.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+..|+|++|.||||++..+-...
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 78899999999997666666554
No 452
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.84 E-value=0.012 Score=44.03 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 152 NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
.++..||=..|..|+||||+|..++.....+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 3466799999999999999999999876543
No 453
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.84 E-value=0.0079 Score=48.58 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||++.++.-.
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 45689999999999999999999764
No 454
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.84 E-value=0.0079 Score=45.86 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|.|..|.|||||.+.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998643
No 455
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.84 E-value=0.014 Score=46.23 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
++++.+.|.+ +.+.++|+.|+|||||...+..+.
T Consensus 111 i~eLf~~l~~---~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 111 LKELIEALQN---RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred HHHHHhhhcC---CEEEEECCCCCCHHHHHHHHhhhh
Confidence 4555555543 588999999999999999999764
No 456
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.83 E-value=0.0075 Score=49.15 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
-.++++.|..|+|||||.+.+..-.+
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 46999999999999999999997543
No 457
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.83 E-value=0.017 Score=47.11 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..+-+|.|.|..|+||||+|+.+.+...
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~ 117 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLG 117 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3566899999999999999999998753
No 458
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.83 E-value=0.0074 Score=40.92 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=19.1
Q ss_pred EEEEEc-CCCCcHHHHHHHHHHHhc
Q 046665 157 MIGVYG-MGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 157 vI~IvG-~gGiGKTTLa~~v~~~~~ 180 (204)
+|++.| .||+||||++..+..-..
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~ 25 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALA 25 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 477887 789999999998876543
No 459
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.83 E-value=0.026 Score=52.70 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHHhhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|.+..++.+...+.. ....++.++|+.|+||||||+.+.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888887777776641 123588999999999999999999764
No 460
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.82 E-value=0.0081 Score=47.17 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+.+|+|..|+|||||.+.|---.
T Consensus 33 ~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 33 RGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred CCcEEEEECCCCcCHHHHHHHHhccC
Confidence 45789999999999999999998543
No 461
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.82 E-value=0.0069 Score=47.24 Aligned_cols=24 Identities=42% Similarity=0.599 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...+-|+|.+|+||||+|+.+-+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~ 35 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK 35 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC
Confidence 456899999999999999988653
No 462
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.82 E-value=0.008 Score=49.23 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+...
T Consensus 70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 70 EKSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4569999999999999999999854
No 463
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.82 E-value=0.0098 Score=45.71 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-+++-|+|.+|+|||+|+.++..+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999988754
No 464
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.016 Score=48.77 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=38.1
Q ss_pred CccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 133 FIHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...++|.+.....|.+.+..+.+ .-+-++|+.|+||||||..+-..
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~ 64 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARF 64 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999887664 46899999999999999766554
No 465
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.81 E-value=0.0081 Score=49.09 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 466
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.81 E-value=0.0076 Score=44.72 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..|.++|.+|+|||||+..+...
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccC
Confidence 45679999999999999988754
No 467
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.0071 Score=53.00 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 287 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 311 (506)
T PRK13549 287 RGEILGIAGLVGAGRTELVQCLFGA 311 (506)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999964
No 468
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.81 E-value=0.019 Score=45.86 Aligned_cols=50 Identities=24% Similarity=0.230 Sum_probs=37.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccC---C-CCceEEEEEcCCCCChHhhhC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGN---N-LFEKVISAQVSQTPQIKKIQE 204 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~iq~ 204 (204)
-.|.=|+|.+|+|||.|+-++.=+.... . .=..++|+.-..+|+.+.+++
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~ 91 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ 91 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH
Confidence 4689999999999999999887553321 1 123599999999999888753
No 469
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.81 E-value=0.0065 Score=47.54 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=17.2
Q ss_pred CccEEEEEcCCCCcHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLV 172 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa 172 (204)
.-.+++|+|..|+|||||+
T Consensus 20 ~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 20 RNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4569999999999999996
No 470
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=95.80 E-value=0.0072 Score=51.66 Aligned_cols=23 Identities=52% Similarity=0.790 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
--||+|+|..|+||||+++.+--
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG 389 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAG 389 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhc
Confidence 56999999999999999999984
No 471
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.79 E-value=0.031 Score=46.96 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 142 TLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 142 ~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
..+.+++.+.......+-|.|.||.|||+|.+.+.+..+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 34556666666777889999999999999999999987653
No 472
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.79 E-value=0.0083 Score=45.96 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
-+++.|.|..|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3699999999999999999988
No 473
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.79 E-value=0.021 Score=43.24 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=31.2
Q ss_pred chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
|.+..++.|.+.+. ....+.++|..|+|||||...+.+..
T Consensus 112 gi~eL~~~l~~~l~--~~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 112 GVEELINAIKKLAK--KGGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CHHHHHHHHHHHhh--cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 56666666666653 34578999999999999999999854
No 474
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=95.79 E-value=0.0077 Score=53.09 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+..-.
T Consensus 34 ~Ge~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 34 AGETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999998653
No 475
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.019 Score=47.69 Aligned_cols=47 Identities=30% Similarity=0.376 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..+-|.+.++++|.+... + +.++=|-++|++|.|||-||+.|-|.-.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~ 210 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD 210 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 456788888888777642 2 2577889999999999999999998643
No 476
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.79 E-value=0.0075 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 29 ~Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 29 PGRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999864
No 477
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.79 E-value=0.021 Score=47.62 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.....|.|.|..|+||||+++.+.+..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 346889999999999999999988753
No 478
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.78 E-value=0.0088 Score=47.83 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+.--
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 33 KNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcc
Confidence 4569999999999999999999643
No 479
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.78 E-value=0.009 Score=46.80 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|.|||||.+.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999999764
No 480
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.78 E-value=0.0085 Score=49.89 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++++|..|.|||||.+.+..-
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999999864
No 481
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.78 E-value=0.008 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.611 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 25 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 25 EGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3468999999999999999999875
No 482
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.78 E-value=0.0085 Score=48.42 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||.+.+...
T Consensus 35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 35 KGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999865
No 483
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=95.77 E-value=0.0076 Score=52.69 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 26 ~Ge~~~liG~nGsGKSTLl~~i~G~ 50 (500)
T TIGR02633 26 PGECVGLCGENGAGKSTLMKILSGV 50 (500)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999864
No 484
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.77 E-value=0.0079 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+...
T Consensus 28 ~Ge~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 28 AGDSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999864
No 485
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.0079 Score=53.04 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+...
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999964
No 486
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.76 E-value=0.0088 Score=48.24 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|.|||||++.+...
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999999864
No 487
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.75 E-value=0.023 Score=43.70 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=29.8
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHH
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.+++|.+..+.-+.-.... ..=+-++|..|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 4577887776665554443 46788999999999999999885
No 488
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.75 E-value=0.019 Score=50.09 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|.+.....|.+++..+.+ +.+-++|..|+||||+|+.+....
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987654 456789999999999999987653
No 489
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=95.74 E-value=0.0083 Score=52.66 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 490
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.74 E-value=0.012 Score=50.06 Aligned_cols=40 Identities=30% Similarity=0.443 Sum_probs=29.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS 194 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 194 (204)
...+-|+|..|+|||+|++.+++....+..=-.+++++.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 4678999999999999999999976533111235666643
No 491
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.74 E-value=0.0089 Score=50.04 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||.+.|..-.
T Consensus 27 ~Ge~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999753
No 492
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.74 E-value=0.0082 Score=51.08 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl 77 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3568999999999999999999964
No 493
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.73 E-value=0.013 Score=50.58 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=33.4
Q ss_pred HHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCc-eEEEEEcC
Q 046665 144 KEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFE-KVISAQVS 194 (204)
Q Consensus 144 ~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~-~~~wv~vs 194 (204)
....++..+ +...-+-|+|..|+|||+|++.+.+..... +.+ .++|++.+
T Consensus 118 ~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~~ 169 (440)
T PRK14088 118 HAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSE 169 (440)
T ss_pred HHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEHH
Confidence 334444433 235569999999999999999999976532 223 35666643
No 494
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.73 E-value=0.017 Score=49.25 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=34.4
Q ss_pred ccccchHHHHHHHHHhhc-------CC---------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLS-------NH---------NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~-------~~---------~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.+...+. .. .-.-|-++|..|+||||||+.+.+...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 357899888777654431 10 135689999999999999999987653
No 495
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.73 E-value=0.0087 Score=49.54 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
+-..+.++|+.|+|||||.+.|--
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445789999999999999999974
No 496
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=95.73 E-value=0.0082 Score=54.02 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 41 ~Ge~~~lvG~nGsGKSTLl~~l~Gl 65 (623)
T PRK10261 41 RGETLAIVGESGSGKSVTALALMRL 65 (623)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4578999999999999999999965
No 497
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.72 E-value=0.16 Score=44.54 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
--.-|++||+.|+|||||.+.+|-+..
T Consensus 415 ~~srvAlVGPNG~GKsTLlKl~~gdl~ 441 (614)
T KOG0927|consen 415 LDSRVALVGPNGAGKSTLLKLITGDLQ 441 (614)
T ss_pred cccceeEecCCCCchhhhHHHHhhccc
Confidence 346799999999999999999998754
No 498
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.72 E-value=0.017 Score=47.27 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+-|.|.|..|+|||||++.+.+..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999998753
No 499
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.72 E-value=0.0084 Score=52.55 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (506)
T PRK13549 30 AGEIVSLCGENGAGKSTLMKVLSGV 54 (506)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 500
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=95.71 E-value=0.0097 Score=47.18 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.++.+|+|..|+|||||...|+-
T Consensus 22 ~~~~~i~G~NGsGKStll~ai~~ 44 (247)
T cd03275 22 DRFTCIIGPNGSGKSNLMDAISF 44 (247)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
Done!