Query 046665
Match_columns 204
No_of_seqs 142 out of 1614
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 05:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.6 1.6E-16 5.6E-21 138.1 7.3 66 137-202 131-203 (549)
2 3qfl_A MLA10; coiled-coil, (CC 99.5 3.2E-14 1.1E-18 98.8 7.3 68 3-74 2-80 (115)
3 1vt4_I APAF-1 related killer D 99.4 5.5E-14 1.9E-18 128.1 4.4 67 136-202 130-198 (1221)
4 3sfz_A APAF-1, apoptotic pepti 99.3 8.8E-13 3E-17 123.2 5.5 66 133-198 123-192 (1249)
5 1z6t_A APAF-1, apoptotic prote 99.2 4.5E-12 1.5E-16 110.7 4.9 64 133-196 123-190 (591)
6 2qen_A Walker-type ATPase; unk 98.4 3.5E-07 1.2E-11 74.0 6.8 54 133-195 11-64 (350)
7 1w5s_A Origin recognition comp 98.4 2.1E-07 7E-12 77.3 4.4 68 133-200 21-101 (412)
8 2fna_A Conserved hypothetical 98.4 7.6E-07 2.6E-11 72.2 7.7 55 132-195 11-65 (357)
9 2qby_A CDC6 homolog 1, cell di 98.3 6.8E-07 2.3E-11 73.2 6.1 63 133-195 19-86 (386)
10 1jbk_A CLPB protein; beta barr 98.3 1E-06 3.6E-11 64.7 6.2 46 134-179 22-67 (195)
11 2chg_A Replication factor C sm 98.2 2.4E-06 8E-11 64.3 7.1 46 134-179 17-62 (226)
12 2p65_A Hypothetical protein PF 98.2 1.8E-06 6.3E-11 63.3 5.5 46 134-179 22-67 (187)
13 2v1u_A Cell division control p 98.2 3.8E-06 1.3E-10 68.8 7.8 66 133-198 18-91 (387)
14 1fnn_A CDC6P, cell division co 98.2 7.6E-06 2.6E-10 67.2 9.1 65 134-199 17-87 (389)
15 2qby_B CDC6 homolog 3, cell di 98.1 2.4E-06 8.3E-11 70.2 4.8 62 134-195 20-91 (384)
16 1njg_A DNA polymerase III subu 98.1 4.8E-06 1.6E-10 63.3 5.3 47 134-180 23-70 (250)
17 1sxj_B Activator 1 37 kDa subu 98.0 4.8E-06 1.6E-10 66.6 5.0 69 134-202 21-89 (323)
18 1iqp_A RFCS; clamp loader, ext 97.8 2.4E-05 8.3E-10 62.6 5.4 46 134-179 25-70 (327)
19 3bos_A Putative DNA replicatio 97.7 8.5E-05 2.9E-09 56.5 7.4 54 140-195 37-90 (242)
20 3h4m_A Proteasome-activating n 97.7 5.4E-05 1.8E-09 59.7 6.0 48 133-180 16-76 (285)
21 2w58_A DNAI, primosome compone 97.7 7.1E-05 2.4E-09 56.0 5.8 52 141-194 36-91 (202)
22 1rz3_A Hypothetical protein rb 97.6 7.9E-05 2.7E-09 55.9 5.5 41 139-179 3-46 (201)
23 2chq_A Replication factor C sm 97.6 9.3E-05 3.2E-09 58.9 6.1 46 134-179 17-62 (319)
24 3pxg_A Negative regulator of g 97.6 7.3E-05 2.5E-09 63.5 5.6 46 134-179 180-225 (468)
25 3syl_A Protein CBBX; photosynt 97.6 0.00011 3.7E-09 58.6 6.3 46 135-180 32-92 (309)
26 1hqc_A RUVB; extended AAA-ATPa 97.6 0.00014 4.6E-09 58.3 6.7 47 134-180 12-63 (324)
27 1sxj_D Activator 1 41 kDa subu 97.6 4.8E-05 1.6E-09 61.6 4.0 46 134-179 37-82 (353)
28 3ec2_A DNA replication protein 97.6 6.7E-05 2.3E-09 55.1 4.4 42 139-180 19-63 (180)
29 3c8u_A Fructokinase; YP_612366 97.6 9.4E-05 3.2E-09 55.8 5.3 40 141-180 6-47 (208)
30 1sxj_A Activator 1 95 kDa subu 97.6 0.00018 6.1E-09 61.9 7.6 46 134-179 39-101 (516)
31 1sxj_E Activator 1 40 kDa subu 97.5 7.6E-05 2.6E-09 60.6 4.6 45 134-178 14-59 (354)
32 3te6_A Regulatory protein SIR3 97.5 8.1E-05 2.8E-09 60.1 4.5 47 134-180 20-70 (318)
33 3n70_A Transport activator; si 97.5 0.00011 3.8E-09 52.2 4.6 45 135-179 2-48 (145)
34 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00037 1.3E-08 54.0 7.9 47 134-180 6-64 (262)
35 1jr3_A DNA polymerase III subu 97.5 0.00013 4.6E-09 59.4 5.4 47 134-180 16-63 (373)
36 3b9p_A CG5977-PA, isoform A; A 97.5 0.00023 7.9E-09 56.4 6.6 47 134-180 21-79 (297)
37 3pfi_A Holliday junction ATP-d 97.5 0.00015 5.1E-09 58.6 5.6 47 134-180 29-80 (338)
38 3cf0_A Transitional endoplasmi 97.4 0.00018 6.2E-09 57.4 5.8 47 134-180 15-74 (301)
39 3pvs_A Replication-associated 97.4 0.00013 4.5E-09 61.7 4.8 47 134-180 26-75 (447)
40 3uk6_A RUVB-like 2; hexameric 97.4 0.00025 8.5E-09 57.8 6.3 48 134-181 44-96 (368)
41 1sxj_C Activator 1 40 kDa subu 97.4 0.00019 6.5E-09 58.2 5.5 46 134-179 25-70 (340)
42 1in4_A RUVB, holliday junction 97.4 0.00013 4.5E-09 59.2 4.2 47 134-180 25-76 (334)
43 1qvr_A CLPB protein; coiled co 97.3 0.00019 6.5E-09 65.4 5.0 46 134-179 170-215 (854)
44 3d8b_A Fidgetin-like protein 1 97.3 0.0004 1.4E-08 56.8 6.4 47 134-180 84-142 (357)
45 2hf9_A Probable hydrogenase ni 97.3 0.00028 9.7E-09 53.4 5.1 38 143-180 26-63 (226)
46 3pxi_A Negative regulator of g 97.3 0.00027 9.4E-09 63.4 5.6 46 134-179 180-225 (758)
47 1ofh_A ATP-dependent HSL prote 97.3 0.00029 9.8E-09 55.9 5.1 47 134-180 15-75 (310)
48 3uie_A Adenylyl-sulfate kinase 97.3 0.00019 6.7E-09 53.6 3.9 29 152-180 22-50 (200)
49 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00034 1.2E-08 62.8 6.0 46 134-179 186-231 (758)
50 3vaa_A Shikimate kinase, SK; s 97.3 0.00019 6.3E-09 53.7 3.7 27 154-180 24-50 (199)
51 4eun_A Thermoresistant glucoki 97.3 0.00019 6.5E-09 53.7 3.7 27 153-179 27-53 (200)
52 2wsm_A Hydrogenase expression/ 97.2 0.00023 8E-09 53.7 4.1 42 138-179 13-54 (221)
53 4gp7_A Metallophosphoesterase; 97.2 0.00014 4.7E-09 53.2 2.6 22 154-175 8-29 (171)
54 1lv7_A FTSH; alpha/beta domain 97.2 0.00043 1.5E-08 53.7 5.5 47 134-180 12-70 (257)
55 1odf_A YGR205W, hypothetical 3 97.2 0.00034 1.2E-08 55.8 4.9 28 153-180 29-56 (290)
56 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.00058 2E-08 55.1 6.4 47 133-179 11-69 (322)
57 3t61_A Gluconokinase; PSI-biol 97.2 0.0002 6.8E-09 53.5 3.4 26 155-180 18-43 (202)
58 3eie_A Vacuolar protein sortin 97.2 0.00068 2.3E-08 54.6 6.6 48 133-180 17-76 (322)
59 3fwy_A Light-independent proto 97.2 0.0002 6.8E-09 57.7 3.4 26 153-178 46-71 (314)
60 3u61_B DNA polymerase accessor 97.2 0.00052 1.8E-08 55.0 5.7 47 134-180 26-73 (324)
61 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00055 1.9E-08 56.0 5.8 44 137-180 2-49 (359)
62 2kjq_A DNAA-related protein; s 97.2 0.00033 1.1E-08 50.1 4.0 39 154-194 35-73 (149)
63 1zuh_A Shikimate kinase; alpha 97.1 0.00032 1.1E-08 50.8 3.7 26 153-178 5-30 (168)
64 2bbw_A Adenylate kinase 4, AK4 97.1 0.00032 1.1E-08 54.1 4.0 27 154-180 26-52 (246)
65 2cvh_A DNA repair and recombin 97.1 0.00043 1.5E-08 52.0 4.5 44 154-202 19-62 (220)
66 2qor_A Guanylate kinase; phosp 97.1 0.0003 1E-08 52.7 3.5 26 154-179 11-36 (204)
67 1znw_A Guanylate kinase, GMP k 97.1 0.00028 9.7E-09 53.1 3.3 26 154-179 19-44 (207)
68 3iij_A Coilin-interacting nucl 97.1 0.00034 1.2E-08 51.2 3.7 24 155-178 11-34 (180)
69 4fcw_A Chaperone protein CLPB; 97.1 0.00035 1.2E-08 55.5 3.9 46 135-180 18-72 (311)
70 3co5_A Putative two-component 97.1 0.00012 4.1E-09 51.9 1.0 45 135-179 5-51 (143)
71 3aez_A Pantothenate kinase; tr 97.1 0.00031 1.1E-08 56.5 3.4 28 153-180 88-115 (312)
72 3vfd_A Spastin; ATPase, microt 97.1 0.0008 2.7E-08 55.6 6.0 48 133-180 114-173 (389)
73 4a74_A DNA repair and recombin 97.1 0.0012 4.2E-08 49.8 6.6 46 155-200 25-74 (231)
74 1d2n_A N-ethylmaleimide-sensit 97.1 0.00069 2.4E-08 53.0 5.3 46 135-180 34-89 (272)
75 1z6g_A Guanylate kinase; struc 97.1 0.00031 1E-08 53.5 3.1 26 154-179 22-47 (218)
76 2qt1_A Nicotinamide riboside k 97.1 0.00036 1.2E-08 52.3 3.5 25 154-178 20-44 (207)
77 2jeo_A Uridine-cytidine kinase 97.1 0.00034 1.2E-08 54.0 3.5 26 154-179 24-49 (245)
78 1n0w_A DNA repair protein RAD5 97.1 0.00098 3.4E-08 50.8 6.0 47 154-200 23-73 (243)
79 4e22_A Cytidylate kinase; P-lo 97.1 0.00038 1.3E-08 54.1 3.6 25 154-178 26-50 (252)
80 1htw_A HI0065; nucleotide-bind 97.0 0.00039 1.3E-08 50.3 3.3 27 153-179 31-57 (158)
81 1ixz_A ATP-dependent metallopr 97.0 0.00091 3.1E-08 51.7 5.6 47 134-180 16-74 (254)
82 1rj9_A FTSY, signal recognitio 97.0 0.00046 1.6E-08 55.4 3.9 27 154-180 101-127 (304)
83 2yvu_A Probable adenylyl-sulfa 97.0 0.00046 1.6E-08 50.8 3.7 27 154-180 12-38 (186)
84 1ukz_A Uridylate kinase; trans 97.0 0.00054 1.8E-08 51.1 4.1 27 153-179 13-39 (203)
85 2x8a_A Nuclear valosin-contain 97.0 0.00056 1.9E-08 54.0 4.2 47 134-180 10-69 (274)
86 1l8q_A Chromosomal replication 97.0 0.0013 4.4E-08 52.8 6.3 39 142-180 22-62 (324)
87 2r62_A Cell division protease 97.0 0.0005 1.7E-08 53.6 3.6 47 134-180 11-69 (268)
88 2bwj_A Adenylate kinase 5; pho 97.0 0.00056 1.9E-08 50.6 3.8 25 155-179 12-36 (199)
89 2zan_A Vacuolar protein sortin 97.0 0.0013 4.6E-08 55.3 6.5 47 133-179 133-191 (444)
90 2bjv_A PSP operon transcriptio 97.0 0.00069 2.4E-08 52.8 4.4 46 135-180 7-54 (265)
91 1uj2_A Uridine-cytidine kinase 97.0 0.00053 1.8E-08 53.2 3.7 28 153-180 20-47 (252)
92 1s96_A Guanylate kinase, GMP k 97.0 0.0005 1.7E-08 52.5 3.5 27 154-180 15-41 (219)
93 3tif_A Uncharacterized ABC tra 97.0 0.00044 1.5E-08 53.3 3.1 25 154-178 30-54 (235)
94 2qp9_X Vacuolar protein sortin 96.9 0.001 3.4E-08 54.4 5.4 47 134-180 51-109 (355)
95 2ehv_A Hypothetical protein PH 96.9 0.00049 1.7E-08 52.8 3.3 24 154-177 29-52 (251)
96 1gvn_B Zeta; postsegregational 96.9 0.0011 3.7E-08 52.7 5.3 26 154-179 32-57 (287)
97 2onk_A Molybdate/tungstate ABC 96.9 0.00057 1.9E-08 52.9 3.5 25 153-178 23-47 (240)
98 2pcj_A ABC transporter, lipopr 96.9 0.00048 1.6E-08 52.7 3.1 25 154-178 29-53 (224)
99 3ney_A 55 kDa erythrocyte memb 96.9 0.00062 2.1E-08 51.1 3.6 26 154-179 18-43 (197)
100 3e70_C DPA, signal recognition 96.9 0.0013 4.3E-08 53.4 5.5 28 153-180 127-154 (328)
101 2p5t_B PEZT; postsegregational 96.9 0.001 3.4E-08 51.7 4.7 26 154-179 31-56 (253)
102 2r44_A Uncharacterized protein 96.9 0.0021 7.2E-08 51.6 6.8 45 134-180 27-71 (331)
103 3b85_A Phosphate starvation-in 96.9 0.00046 1.6E-08 52.3 2.6 24 155-178 22-45 (208)
104 3b9q_A Chloroplast SRP recepto 96.9 0.00069 2.4E-08 54.3 3.7 27 154-180 99-125 (302)
105 2cdn_A Adenylate kinase; phosp 96.9 0.00093 3.2E-08 49.8 4.2 27 154-180 19-45 (201)
106 2cbz_A Multidrug resistance-as 96.9 0.00059 2E-08 52.7 3.1 25 154-178 30-54 (237)
107 3tqc_A Pantothenate kinase; bi 96.9 0.00078 2.7E-08 54.4 3.9 27 154-180 91-117 (321)
108 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00064 2.2E-08 52.9 3.3 25 154-178 28-52 (250)
109 1b0u_A Histidine permease; ABC 96.8 0.00059 2E-08 53.5 3.1 25 154-178 31-55 (262)
110 2grj_A Dephospho-COA kinase; T 96.8 0.00077 2.6E-08 50.4 3.6 26 153-178 10-35 (192)
111 3gfo_A Cobalt import ATP-bindi 96.8 0.00061 2.1E-08 53.8 3.1 24 154-177 33-56 (275)
112 3lnc_A Guanylate kinase, GMP k 96.8 0.00041 1.4E-08 53.0 2.1 24 155-178 27-51 (231)
113 1sq5_A Pantothenate kinase; P- 96.8 0.00081 2.8E-08 53.9 3.8 28 153-180 78-105 (308)
114 1ji0_A ABC transporter; ATP bi 96.8 0.00066 2.3E-08 52.5 3.1 25 154-178 31-55 (240)
115 1g6h_A High-affinity branched- 96.8 0.00066 2.3E-08 53.0 3.1 25 154-178 32-56 (257)
116 2pze_A Cystic fibrosis transme 96.8 0.00068 2.3E-08 52.0 3.1 25 154-178 33-57 (229)
117 2px0_A Flagellar biosynthesis 96.8 0.00071 2.4E-08 54.0 3.3 27 154-180 104-130 (296)
118 2zu0_C Probable ATP-dependent 96.8 0.00071 2.4E-08 53.2 3.3 25 154-178 45-69 (267)
119 1ojl_A Transcriptional regulat 96.8 0.00097 3.3E-08 53.4 4.1 45 135-179 3-49 (304)
120 4g1u_C Hemin import ATP-bindin 96.8 0.00068 2.3E-08 53.3 3.1 25 154-178 36-60 (266)
121 2olj_A Amino acid ABC transpor 96.8 0.00069 2.4E-08 53.2 3.1 25 154-178 49-73 (263)
122 1g8p_A Magnesium-chelatase 38 96.8 0.00096 3.3E-08 53.8 4.0 47 134-180 24-70 (350)
123 1sgw_A Putative ABC transporte 96.8 0.00064 2.2E-08 51.7 2.8 25 154-178 34-58 (214)
124 3hws_A ATP-dependent CLP prote 96.8 0.0018 6E-08 53.0 5.5 46 135-180 16-76 (363)
125 2f6r_A COA synthase, bifunctio 96.8 0.00088 3E-08 53.0 3.6 23 154-176 74-96 (281)
126 2ff7_A Alpha-hemolysin translo 96.8 0.00077 2.6E-08 52.4 3.1 25 154-178 34-58 (247)
127 1mv5_A LMRA, multidrug resista 96.8 0.00077 2.6E-08 52.2 3.1 25 154-178 27-51 (243)
128 3nwj_A ATSK2; P loop, shikimat 96.8 0.00088 3E-08 52.2 3.4 26 155-180 48-73 (250)
129 1m7g_A Adenylylsulfate kinase; 96.7 0.001 3.5E-08 50.0 3.7 28 153-180 23-50 (211)
130 1vpl_A ABC transporter, ATP-bi 96.7 0.0008 2.7E-08 52.6 3.1 25 154-178 40-64 (256)
131 2ghi_A Transport protein; mult 96.7 0.00081 2.8E-08 52.7 3.1 25 154-178 45-69 (260)
132 2og2_A Putative signal recogni 96.7 0.001 3.4E-08 54.6 3.8 27 154-180 156-182 (359)
133 3t15_A Ribulose bisphosphate c 96.7 0.0013 4.5E-08 52.2 4.4 27 154-180 35-61 (293)
134 2ixe_A Antigen peptide transpo 96.7 0.00084 2.9E-08 52.9 3.1 25 154-178 44-68 (271)
135 1pzn_A RAD51, DNA repair and r 96.7 0.0024 8.2E-08 52.1 6.0 48 154-201 130-181 (349)
136 1um8_A ATP-dependent CLP prote 96.7 0.0022 7.5E-08 52.6 5.7 26 155-180 72-97 (376)
137 2yz2_A Putative ABC transporte 96.7 0.00087 3E-08 52.6 3.1 25 154-178 32-56 (266)
138 2qi9_C Vitamin B12 import ATP- 96.7 0.00087 3E-08 52.2 3.1 25 154-178 25-49 (249)
139 2z4s_A Chromosomal replication 96.7 0.0019 6.5E-08 54.4 5.4 39 142-180 116-155 (440)
140 2nq2_C Hypothetical ABC transp 96.7 0.0009 3.1E-08 52.2 3.1 25 154-178 30-54 (253)
141 2ihy_A ABC transporter, ATP-bi 96.7 0.0009 3.1E-08 53.0 3.1 25 154-178 46-70 (279)
142 1oix_A RAS-related protein RAB 96.7 0.0011 3.7E-08 49.0 3.4 25 155-179 29-53 (191)
143 3p32_A Probable GTPase RV1496/ 96.7 0.0022 7.4E-08 52.4 5.5 37 143-179 65-103 (355)
144 4b4t_K 26S protease regulatory 96.7 0.0031 1.1E-07 52.9 6.3 48 133-180 171-231 (428)
145 2c9o_A RUVB-like 1; hexameric 96.7 0.0029 1E-07 53.4 6.2 47 134-180 37-88 (456)
146 1vma_A Cell division protein F 96.7 0.0011 3.9E-08 53.1 3.5 27 154-180 103-129 (306)
147 2eyu_A Twitching motility prot 96.6 0.0012 4E-08 51.8 3.4 26 153-178 23-48 (261)
148 3umf_A Adenylate kinase; rossm 96.6 0.0015 5.3E-08 49.7 4.0 27 154-180 28-54 (217)
149 3hu3_A Transitional endoplasmi 96.6 0.0028 9.7E-08 54.1 5.9 46 134-179 204-262 (489)
150 2yhs_A FTSY, cell division pro 96.6 0.0014 4.7E-08 55.9 3.8 27 154-180 292-318 (503)
151 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.0017 5.8E-08 55.6 4.4 45 134-180 22-66 (500)
152 1iy2_A ATP-dependent metallopr 96.6 0.0012 4.1E-08 51.8 3.2 48 133-180 39-98 (278)
153 3end_A Light-independent proto 96.6 0.0013 4.6E-08 52.3 3.4 29 152-180 38-66 (307)
154 2v9p_A Replication protein E1; 96.6 0.0014 4.9E-08 52.5 3.5 27 153-179 124-150 (305)
155 4b4t_L 26S protease subunit RP 96.6 0.0044 1.5E-07 52.1 6.5 49 133-181 180-241 (437)
156 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0014 4.9E-08 49.4 3.3 25 155-179 23-47 (235)
157 2pjz_A Hypothetical protein ST 96.5 0.0013 4.5E-08 51.6 3.1 24 155-178 30-53 (263)
158 1yrb_A ATP(GTP)binding protein 96.5 0.0015 5.2E-08 50.5 3.4 27 154-180 13-39 (262)
159 2xxa_A Signal recognition part 96.5 0.0025 8.6E-08 53.6 4.8 28 154-181 99-126 (433)
160 3tlx_A Adenylate kinase 2; str 96.5 0.0021 7.3E-08 49.5 4.1 27 153-179 27-53 (243)
161 4b4t_M 26S protease regulatory 96.5 0.0032 1.1E-07 52.9 5.4 48 133-180 180-240 (434)
162 1zu4_A FTSY; GTPase, signal re 96.5 0.0017 5.7E-08 52.5 3.5 27 154-180 104-130 (320)
163 2qgz_A Helicase loader, putati 96.5 0.0035 1.2E-07 50.2 5.4 52 140-193 134-189 (308)
164 2bbs_A Cystic fibrosis transme 96.5 0.0014 4.9E-08 52.1 3.1 25 154-178 63-87 (290)
165 2vp4_A Deoxynucleoside kinase; 96.5 0.00093 3.2E-08 51.1 1.9 25 154-178 19-43 (230)
166 3dm5_A SRP54, signal recogniti 96.5 0.0038 1.3E-07 52.5 5.7 28 154-181 99-126 (443)
167 3nh6_A ATP-binding cassette SU 96.5 0.0011 3.7E-08 53.2 2.2 24 154-177 79-102 (306)
168 2ce7_A Cell division protein F 96.4 0.0047 1.6E-07 52.5 6.1 47 134-180 16-74 (476)
169 1v5w_A DMC1, meiotic recombina 96.4 0.0049 1.7E-07 50.1 6.0 49 154-202 121-173 (343)
170 4eaq_A DTMP kinase, thymidylat 96.4 0.0038 1.3E-07 47.8 5.1 32 154-187 25-56 (229)
171 3tui_C Methionine import ATP-b 96.4 0.0018 6E-08 53.3 3.3 25 154-178 53-77 (366)
172 2z43_A DNA repair and recombin 96.4 0.0052 1.8E-07 49.5 6.0 48 155-202 107-158 (324)
173 1nlf_A Regulatory protein REPA 96.4 0.0019 6.4E-08 50.8 3.3 44 154-197 29-80 (279)
174 3con_A GTPase NRAS; structural 96.4 0.0018 6.3E-08 47.3 3.0 24 156-179 22-45 (190)
175 2i1q_A DNA repair and recombin 96.4 0.0042 1.5E-07 49.8 5.4 50 154-203 97-160 (322)
176 1ls1_A Signal recognition part 96.4 0.0021 7E-08 51.3 3.5 27 154-180 97-123 (295)
177 1q3t_A Cytidylate kinase; nucl 96.4 0.0027 9.3E-08 48.6 4.0 25 154-178 15-39 (236)
178 4gzl_A RAS-related C3 botulinu 96.4 0.0021 7.3E-08 47.8 3.3 32 148-179 23-54 (204)
179 3fvq_A Fe(3+) IONS import ATP- 96.4 0.002 6.7E-08 52.9 3.2 25 154-178 29-53 (359)
180 3t1o_A Gliding protein MGLA; G 96.4 0.0022 7.4E-08 46.9 3.2 23 156-178 15-37 (198)
181 3upu_A ATP-dependent DNA helic 96.4 0.0092 3.1E-07 50.4 7.5 44 138-182 29-72 (459)
182 1ak2_A Adenylate kinase isoenz 96.4 0.0028 9.7E-08 48.4 4.0 26 155-180 16-41 (233)
183 3k1j_A LON protease, ATP-depen 96.4 0.0036 1.2E-07 54.7 5.1 44 134-179 41-84 (604)
184 3m6a_A ATP-dependent protease 96.4 0.0043 1.5E-07 53.6 5.5 46 135-180 82-133 (543)
185 3lda_A DNA repair protein RAD5 96.3 0.0057 1.9E-07 50.9 6.0 48 155-202 178-229 (400)
186 2ged_A SR-beta, signal recogni 96.3 0.002 7E-08 47.2 3.0 26 154-179 47-72 (193)
187 3kl4_A SRP54, signal recogniti 96.3 0.0032 1.1E-07 52.9 4.5 27 154-180 96-122 (433)
188 1z47_A CYSA, putative ABC-tran 96.3 0.0021 7.3E-08 52.6 3.3 25 154-178 40-64 (355)
189 1ypw_A Transitional endoplasmi 96.3 0.0015 5E-08 59.2 2.5 46 134-179 204-262 (806)
190 1zj6_A ADP-ribosylation factor 96.3 0.0039 1.3E-07 45.5 4.4 34 144-178 6-39 (187)
191 1moz_A ARL1, ADP-ribosylation 96.3 0.0031 1.1E-07 45.6 3.8 35 144-178 6-41 (183)
192 3kta_A Chromosome segregation 96.3 0.0027 9.3E-08 46.3 3.5 23 155-177 26-48 (182)
193 2zr9_A Protein RECA, recombina 96.3 0.0051 1.7E-07 50.2 5.3 44 154-199 60-103 (349)
194 4b4t_J 26S protease regulatory 96.3 0.0057 2E-07 50.8 5.6 48 134-181 148-208 (405)
195 1cr0_A DNA primase/helicase; R 96.3 0.0024 8.3E-08 50.5 3.3 39 154-193 34-72 (296)
196 2yyz_A Sugar ABC transporter, 96.3 0.0024 8.2E-08 52.4 3.3 25 154-178 28-52 (359)
197 1p9r_A General secretion pathw 96.3 0.0043 1.5E-07 51.9 4.8 29 151-179 163-191 (418)
198 2it1_A 362AA long hypothetical 96.3 0.0025 8.5E-08 52.3 3.3 25 154-178 28-52 (362)
199 3zvl_A Bifunctional polynucleo 96.3 0.0025 8.6E-08 53.2 3.4 27 153-179 256-282 (416)
200 1g29_1 MALK, maltose transport 96.3 0.0025 8.6E-08 52.5 3.3 25 154-178 28-52 (372)
201 2qnr_A Septin-2, protein NEDD5 96.2 0.0021 7.1E-08 51.4 2.7 21 158-178 21-41 (301)
202 2j37_W Signal recognition part 96.2 0.004 1.4E-07 53.3 4.6 27 154-180 100-126 (504)
203 3rlf_A Maltose/maltodextrin im 96.2 0.0026 9E-08 52.5 3.3 25 154-178 28-52 (381)
204 1lw7_A Transcriptional regulat 96.2 0.0025 8.5E-08 52.2 3.2 25 155-179 170-194 (365)
205 3jvv_A Twitching mobility prot 96.2 0.0036 1.2E-07 51.2 4.1 26 153-178 121-146 (356)
206 1v43_A Sugar-binding transport 96.2 0.0027 9.2E-08 52.3 3.3 25 154-178 36-60 (372)
207 1fzq_A ADP-ribosylation factor 96.2 0.0042 1.4E-07 45.2 4.1 26 153-178 14-39 (181)
208 1g41_A Heat shock protein HSLU 96.2 0.0041 1.4E-07 52.3 4.5 47 134-180 15-75 (444)
209 2obl_A ESCN; ATPase, hydrolase 96.2 0.0029 9.8E-08 51.6 3.4 28 153-180 69-96 (347)
210 1f6b_A SAR1; gtpases, N-termin 96.2 0.0044 1.5E-07 45.9 4.2 32 146-177 15-47 (198)
211 1svm_A Large T antigen; AAA+ f 96.2 0.003 1E-07 52.1 3.5 27 153-179 167-193 (377)
212 2v3c_C SRP54, signal recogniti 96.2 0.0021 7.2E-08 54.0 2.6 26 154-179 98-123 (432)
213 3ihw_A Centg3; RAS, centaurin, 96.2 0.0028 9.6E-08 46.4 3.0 24 156-179 21-44 (184)
214 1z0f_A RAB14, member RAS oncog 96.2 0.0029 9.8E-08 45.4 3.0 25 155-179 15-39 (179)
215 4b4t_H 26S protease regulatory 96.2 0.0076 2.6E-07 50.9 5.9 47 134-180 209-268 (467)
216 3hr8_A Protein RECA; alpha and 96.2 0.0071 2.4E-07 49.5 5.6 43 155-199 61-103 (356)
217 3d31_A Sulfate/molybdate ABC t 96.2 0.0022 7.4E-08 52.4 2.4 25 154-178 25-49 (348)
218 3kkq_A RAS-related protein M-R 96.1 0.0031 1E-07 45.7 3.0 25 155-179 18-42 (183)
219 1u94_A RECA protein, recombina 96.1 0.007 2.4E-07 49.5 5.4 44 154-199 62-105 (356)
220 1oxx_K GLCV, glucose, ABC tran 96.1 0.0019 6.5E-08 52.9 2.0 25 154-178 30-54 (353)
221 3c5c_A RAS-like protein 12; GD 96.1 0.0031 1E-07 46.2 3.0 25 155-179 21-45 (187)
222 1m2o_B GTP-binding protein SAR 96.1 0.0031 1.1E-07 46.4 2.9 24 155-178 23-46 (190)
223 2ewv_A Twitching motility prot 96.1 0.0035 1.2E-07 51.6 3.5 26 153-178 134-159 (372)
224 1pui_A ENGB, probable GTP-bind 96.1 0.0018 6.1E-08 48.2 1.5 26 153-178 24-49 (210)
225 2a9k_A RAS-related protein RAL 96.1 0.0034 1.2E-07 45.4 3.0 25 155-179 18-42 (187)
226 1svi_A GTP-binding protein YSX 96.1 0.0037 1.3E-07 45.8 3.2 25 154-178 22-46 (195)
227 1nrj_B SR-beta, signal recogni 96.1 0.0043 1.5E-07 46.4 3.6 26 154-179 11-36 (218)
228 1tq4_A IIGP1, interferon-induc 96.1 0.0045 1.5E-07 51.7 4.0 24 154-177 68-91 (413)
229 2dhr_A FTSH; AAA+ protein, hex 96.1 0.0088 3E-07 51.1 5.9 48 133-180 30-89 (499)
230 3dz8_A RAS-related protein RAB 96.1 0.0039 1.4E-07 45.7 3.3 25 155-179 23-47 (191)
231 1tue_A Replication protein E1; 96.1 0.007 2.4E-07 45.7 4.7 39 142-180 44-83 (212)
232 2y8e_A RAB-protein 6, GH09086P 96.1 0.0034 1.2E-07 45.0 2.9 24 156-179 15-38 (179)
233 3pqc_A Probable GTP-binding pr 96.1 0.0029 9.9E-08 46.2 2.6 26 154-179 22-47 (195)
234 2gza_A Type IV secretion syste 96.1 0.0029 9.8E-08 51.9 2.8 25 154-178 174-198 (361)
235 2oil_A CATX-8, RAS-related pro 96.1 0.0035 1.2E-07 45.9 3.0 25 155-179 25-49 (193)
236 2bov_A RAla, RAS-related prote 96.1 0.0035 1.2E-07 46.3 3.0 26 154-179 13-38 (206)
237 2efe_B Small GTP-binding prote 96.1 0.0035 1.2E-07 45.2 3.0 24 156-179 13-36 (181)
238 3bc1_A RAS-related protein RAB 96.1 0.0036 1.2E-07 45.5 3.0 25 155-179 11-35 (195)
239 2npi_A Protein CLP1; CLP1-PCF1 96.0 0.0033 1.1E-07 53.3 3.1 25 154-178 137-161 (460)
240 2atv_A RERG, RAS-like estrogen 96.0 0.0038 1.3E-07 46.0 3.0 25 154-178 27-51 (196)
241 1j8m_F SRP54, signal recogniti 96.0 0.003 1E-07 50.4 2.6 26 155-180 98-123 (297)
242 3gd7_A Fusion complex of cysti 96.0 0.0038 1.3E-07 51.7 3.2 24 154-177 46-69 (390)
243 4b4t_I 26S protease regulatory 96.0 0.011 3.9E-07 49.4 6.1 48 133-180 181-241 (437)
244 3llu_A RAS-related GTP-binding 96.0 0.0035 1.2E-07 46.2 2.7 24 155-178 20-43 (196)
245 2qm8_A GTPase/ATPase; G protei 96.0 0.0047 1.6E-07 50.1 3.7 26 153-178 53-78 (337)
246 2fg5_A RAB-22B, RAS-related pr 96.0 0.0038 1.3E-07 45.8 2.9 25 155-179 23-47 (192)
247 3cbq_A GTP-binding protein REM 96.0 0.0031 1E-07 46.7 2.4 23 154-176 22-44 (195)
248 2www_A Methylmalonic aciduria 96.0 0.005 1.7E-07 50.2 3.8 25 154-178 73-97 (349)
249 1gwn_A RHO-related GTP-binding 96.0 0.004 1.4E-07 46.5 2.9 25 155-179 28-52 (205)
250 2dr3_A UPF0273 protein PH0284; 96.0 0.005 1.7E-07 46.9 3.5 39 155-195 23-61 (247)
251 3tkl_A RAS-related protein RAB 95.9 0.0043 1.5E-07 45.4 3.0 25 155-179 16-40 (196)
252 3a8t_A Adenylate isopentenyltr 95.9 0.0042 1.4E-07 50.4 3.1 25 154-178 39-63 (339)
253 3oes_A GTPase rhebl1; small GT 95.9 0.0046 1.6E-07 45.7 3.2 26 154-179 23-48 (201)
254 1zd9_A ADP-ribosylation factor 95.9 0.0044 1.5E-07 45.3 3.0 24 156-179 23-46 (188)
255 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0042 1.4E-07 53.7 3.3 25 155-179 312-336 (538)
256 3reg_A RHO-like small GTPase; 95.9 0.0044 1.5E-07 45.4 3.0 25 155-179 23-47 (194)
257 2ew1_A RAS-related protein RAB 95.9 0.0043 1.5E-07 46.2 2.9 24 155-178 26-49 (201)
258 2gf9_A RAS-related protein RAB 95.9 0.0045 1.5E-07 45.2 3.0 25 155-179 22-46 (189)
259 2qag_B Septin-6, protein NEDD5 95.9 0.0038 1.3E-07 52.3 2.8 21 158-178 45-65 (427)
260 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.0068 2.3E-07 48.9 4.2 24 155-178 123-146 (331)
261 2b6h_A ADP-ribosylation factor 95.9 0.005 1.7E-07 45.3 3.2 28 150-177 24-51 (192)
262 2a5j_A RAS-related protein RAB 95.9 0.0046 1.6E-07 45.3 3.0 24 156-179 22-45 (191)
263 2p67_A LAO/AO transport system 95.9 0.005 1.7E-07 50.0 3.4 27 152-178 53-79 (341)
264 1z06_A RAS-related protein RAB 95.9 0.0048 1.6E-07 45.1 3.0 25 155-179 20-44 (189)
265 1x3s_A RAS-related protein RAB 95.9 0.0049 1.7E-07 45.0 3.0 24 156-179 16-39 (195)
266 2q3h_A RAS homolog gene family 95.9 0.0043 1.5E-07 45.7 2.7 25 155-179 20-44 (201)
267 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0047 1.6E-07 53.4 3.3 25 154-178 46-70 (538)
268 2yv5_A YJEQ protein; hydrolase 95.8 0.0053 1.8E-07 49.0 3.3 33 143-179 156-188 (302)
269 2o52_A RAS-related protein RAB 95.8 0.0043 1.5E-07 45.9 2.7 24 155-178 25-48 (200)
270 2p5s_A RAS and EF-hand domain 95.8 0.0049 1.7E-07 45.5 3.0 25 154-178 27-51 (199)
271 2ffh_A Protein (FFH); SRP54, s 95.8 0.0072 2.5E-07 50.6 4.2 28 154-181 97-124 (425)
272 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.0036 1.2E-07 50.7 2.3 25 155-179 171-195 (330)
273 3ice_A Transcription terminati 95.8 0.013 4.6E-07 48.5 5.6 53 144-197 162-216 (422)
274 2dpy_A FLII, flagellum-specifi 95.8 0.0054 1.9E-07 51.6 3.4 28 153-180 155-182 (438)
275 3cr8_A Sulfate adenylyltranfer 95.8 0.0038 1.3E-07 54.0 2.5 27 154-180 368-394 (552)
276 3lxx_A GTPase IMAP family memb 95.8 0.0049 1.7E-07 47.1 2.9 26 154-179 28-53 (239)
277 2rcn_A Probable GTPase ENGC; Y 95.8 0.0055 1.9E-07 50.2 3.3 25 156-180 216-240 (358)
278 1ksh_A ARF-like protein 2; sma 95.8 0.0047 1.6E-07 44.9 2.6 27 153-179 16-42 (186)
279 3pxi_A Negative regulator of g 95.8 0.021 7.1E-07 51.3 7.3 46 134-179 491-545 (758)
280 3ozx_A RNAse L inhibitor; ATP 95.8 0.0049 1.7E-07 53.2 3.1 25 154-178 24-48 (538)
281 3ozx_A RNAse L inhibitor; ATP 95.8 0.0044 1.5E-07 53.5 2.8 24 155-178 294-317 (538)
282 2fv8_A H6, RHO-related GTP-bin 95.8 0.0053 1.8E-07 45.7 2.9 24 156-179 26-49 (207)
283 2atx_A Small GTP binding prote 95.8 0.0054 1.8E-07 44.9 2.9 24 156-179 19-42 (194)
284 3bk7_A ABC transporter ATP-bin 95.8 0.0053 1.8E-07 53.8 3.3 24 155-178 382-405 (607)
285 2j1l_A RHO-related GTP-binding 95.8 0.0049 1.7E-07 46.2 2.6 24 155-178 34-57 (214)
286 2h17_A ADP-ribosylation factor 95.7 0.0048 1.6E-07 44.8 2.5 23 156-178 22-44 (181)
287 2gno_A DNA polymerase III, gam 95.7 0.021 7.1E-07 45.7 6.3 63 139-202 2-67 (305)
288 3euj_A Chromosome partition pr 95.7 0.006 2.1E-07 51.9 3.3 23 156-178 30-52 (483)
289 3bh0_A DNAB-like replicative h 95.7 0.014 4.9E-07 46.7 5.4 40 154-195 67-106 (315)
290 2hup_A RAS-related protein RAB 95.7 0.006 2E-07 45.2 2.9 24 155-178 29-52 (201)
291 3cph_A RAS-related protein SEC 95.7 0.0061 2.1E-07 45.2 3.0 25 155-179 20-44 (213)
292 2gco_A H9, RHO-related GTP-bin 95.7 0.006 2.1E-07 45.1 2.9 24 156-179 26-49 (201)
293 3j16_B RLI1P; ribosome recycli 95.7 0.0059 2E-07 53.5 3.3 23 156-178 379-401 (608)
294 3q3j_B RHO-related GTP-binding 95.7 0.0064 2.2E-07 45.6 3.0 24 156-179 28-51 (214)
295 4bas_A ADP-ribosylation factor 95.6 0.0064 2.2E-07 44.5 2.9 25 154-178 16-40 (199)
296 1xp8_A RECA protein, recombina 95.6 0.015 5.3E-07 47.7 5.4 43 155-199 74-116 (366)
297 3j16_B RLI1P; ribosome recycli 95.6 0.0065 2.2E-07 53.3 3.3 25 154-178 102-126 (608)
298 1p5z_B DCK, deoxycytidine kina 95.6 0.0041 1.4E-07 48.3 1.8 26 154-179 23-48 (263)
299 1u0l_A Probable GTPase ENGC; p 95.6 0.007 2.4E-07 48.2 3.1 33 143-178 160-192 (301)
300 2il1_A RAB12; G-protein, GDP, 95.6 0.007 2.4E-07 44.4 2.9 24 156-179 27-50 (192)
301 2qag_C Septin-7; cell cycle, c 95.6 0.0053 1.8E-07 51.3 2.4 22 158-179 34-55 (418)
302 2qu8_A Putative nucleolar GTP- 95.6 0.0074 2.5E-07 45.7 3.0 25 154-178 28-52 (228)
303 3bk7_A ABC transporter ATP-bin 95.5 0.0068 2.3E-07 53.1 3.1 25 154-178 116-140 (607)
304 3lv8_A DTMP kinase, thymidylat 95.5 0.015 5.3E-07 44.7 4.8 36 155-191 27-62 (236)
305 2h57_A ADP-ribosylation factor 95.5 0.0044 1.5E-07 45.3 1.6 25 155-179 21-45 (190)
306 3io3_A DEHA2D07832P; chaperone 95.5 0.0092 3.1E-07 48.7 3.6 31 150-180 13-43 (348)
307 3b5x_A Lipid A export ATP-bind 95.5 0.0073 2.5E-07 52.6 3.1 25 154-178 368-392 (582)
308 2g3y_A GTP-binding protein GEM 95.5 0.0082 2.8E-07 45.3 3.1 23 155-177 37-59 (211)
309 3b60_A Lipid A export ATP-bind 95.5 0.0072 2.5E-07 52.6 3.1 25 154-178 368-392 (582)
310 1r6b_X CLPA protein; AAA+, N-t 95.5 0.02 6.7E-07 51.4 6.0 46 134-179 458-512 (758)
311 3ch4_B Pmkase, phosphomevalona 95.5 0.012 4.1E-07 44.2 3.9 26 154-179 10-35 (202)
312 2axn_A 6-phosphofructo-2-kinas 95.5 0.011 3.7E-07 50.9 4.1 28 153-180 33-60 (520)
313 2f7s_A C25KG, RAS-related prot 95.5 0.0066 2.2E-07 45.3 2.5 24 155-178 25-48 (217)
314 2xtp_A GTPase IMAP family memb 95.5 0.0075 2.6E-07 46.6 2.8 26 154-179 21-46 (260)
315 1f2t_A RAD50 ABC-ATPase; DNA d 95.5 0.0099 3.4E-07 42.3 3.3 23 155-177 23-45 (149)
316 3io5_A Recombination and repai 95.5 0.023 7.8E-07 45.8 5.6 45 156-200 29-73 (333)
317 1t9h_A YLOQ, probable GTPase E 95.4 0.0038 1.3E-07 50.1 1.0 24 155-178 173-196 (307)
318 1g8f_A Sulfate adenylyltransfe 95.4 0.019 6.4E-07 49.2 5.4 28 154-181 394-421 (511)
319 1bif_A 6-phosphofructo-2-kinas 95.4 0.011 3.6E-07 50.2 3.7 28 153-180 37-64 (469)
320 3ld9_A DTMP kinase, thymidylat 95.4 0.012 4.1E-07 44.9 3.5 29 153-181 19-47 (223)
321 4dkx_A RAS-related protein RAB 95.4 0.0095 3.2E-07 45.1 3.0 22 157-178 15-36 (216)
322 3cpj_B GTP-binding protein YPT 95.3 0.0095 3.3E-07 44.8 3.0 25 155-179 13-37 (223)
323 3th5_A RAS-related C3 botulinu 94.3 0.003 1E-07 46.8 0.0 29 150-178 25-53 (204)
324 1qvr_A CLPB protein; coiled co 95.3 0.011 3.9E-07 53.7 3.8 45 135-179 559-612 (854)
325 3fkq_A NTRC-like two-domain pr 95.3 0.012 3.9E-07 48.4 3.5 27 153-179 141-168 (373)
326 3v9p_A DTMP kinase, thymidylat 95.3 0.0092 3.1E-07 45.7 2.7 27 155-181 25-51 (227)
327 2yl4_A ATP-binding cassette SU 95.3 0.0071 2.4E-07 52.8 2.3 25 154-178 369-393 (595)
328 1mky_A Probable GTP-binding pr 95.3 0.024 8.3E-07 47.5 5.5 43 137-179 151-204 (439)
329 2x77_A ADP-ribosylation factor 95.2 0.0076 2.6E-07 43.9 2.0 25 153-177 20-44 (189)
330 3cf2_A TER ATPase, transitiona 95.2 0.016 5.5E-07 52.3 4.4 46 135-180 205-263 (806)
331 1tf7_A KAIC; homohexamer, hexa 95.2 0.01 3.6E-07 50.9 3.1 22 154-175 38-59 (525)
332 3qf4_B Uncharacterized ABC tra 95.2 0.0083 2.8E-07 52.4 2.5 25 154-178 380-404 (598)
333 2qtf_A Protein HFLX, GTP-bindi 95.2 0.011 3.7E-07 48.6 3.0 26 154-179 178-203 (364)
334 4dhe_A Probable GTP-binding pr 95.2 0.0088 3E-07 44.8 2.3 26 154-179 28-53 (223)
335 1a5t_A Delta prime, HOLB; zinc 95.2 0.031 1.1E-06 45.0 5.7 43 138-180 6-49 (334)
336 3lxw_A GTPase IMAP family memb 95.2 0.011 3.8E-07 45.6 2.9 24 155-178 21-44 (247)
337 2qag_A Septin-2, protein NEDD5 95.1 0.0082 2.8E-07 49.1 2.2 22 157-178 39-60 (361)
338 2yc2_C IFT27, small RAB-relate 95.1 0.0045 1.5E-07 45.7 0.6 23 156-178 21-43 (208)
339 3gj0_A GTP-binding nuclear pro 95.1 0.0064 2.2E-07 45.6 1.4 21 156-176 16-36 (221)
340 3f9v_A Minichromosome maintena 95.1 0.01 3.5E-07 51.9 2.9 22 157-178 329-350 (595)
341 3k9g_A PF-32 protein; ssgcid, 95.1 0.012 4.3E-07 45.5 3.0 29 152-180 24-53 (267)
342 1m8p_A Sulfate adenylyltransfe 95.1 0.017 5.7E-07 50.3 4.1 27 154-180 395-421 (573)
343 2oap_1 GSPE-2, type II secreti 95.1 0.01 3.6E-07 50.8 2.7 25 155-179 260-284 (511)
344 2aka_B Dynamin-1; fusion prote 95.1 0.028 9.7E-07 44.1 5.1 37 143-179 8-50 (299)
345 2qmh_A HPR kinase/phosphorylas 95.0 0.013 4.4E-07 44.0 2.8 24 155-178 34-57 (205)
346 4a82_A Cystic fibrosis transme 95.0 0.0072 2.5E-07 52.6 1.6 25 154-178 366-390 (578)
347 3l0o_A Transcription terminati 95.0 0.037 1.3E-06 45.8 5.6 53 144-197 163-217 (427)
348 1ni3_A YCHF GTPase, YCHF GTP-b 95.0 0.016 5.3E-07 48.1 3.4 25 154-178 19-43 (392)
349 3def_A T7I23.11 protein; chlor 95.0 0.025 8.4E-07 43.9 4.4 26 154-179 35-60 (262)
350 1sky_E F1-ATPase, F1-ATP synth 95.0 0.033 1.1E-06 47.2 5.4 42 155-197 151-192 (473)
351 1x6v_B Bifunctional 3'-phospho 94.9 0.018 6.3E-07 50.5 3.9 26 154-179 51-76 (630)
352 2oze_A ORF delta'; para, walke 94.9 0.013 4.4E-07 46.2 2.7 27 154-180 33-62 (298)
353 2e87_A Hypothetical protein PH 94.9 0.017 5.9E-07 47.0 3.6 25 154-178 166-190 (357)
354 3qf4_A ABC transporter, ATP-bi 94.9 0.0099 3.4E-07 51.8 2.1 25 154-178 368-392 (587)
355 1u0j_A DNA replication protein 94.9 0.038 1.3E-06 43.3 5.2 37 142-178 89-127 (267)
356 3iqw_A Tail-anchored protein t 94.9 0.018 6.1E-07 46.7 3.5 31 150-180 11-41 (334)
357 3ug7_A Arsenical pump-driving 94.9 0.029 9.9E-07 45.6 4.7 28 152-179 22-50 (349)
358 2o5v_A DNA replication and rep 94.8 0.019 6.4E-07 47.0 3.5 23 155-177 26-48 (359)
359 1ypw_A Transitional endoplasmi 94.8 0.016 5.4E-07 52.5 3.3 47 134-180 477-536 (806)
360 1h65_A Chloroplast outer envel 94.8 0.016 5.4E-07 45.2 2.9 26 154-179 38-63 (270)
361 1tf7_A KAIC; homohexamer, hexa 94.8 0.017 5.7E-07 49.6 3.2 27 154-180 280-306 (525)
362 2iw3_A Elongation factor 3A; a 94.8 0.017 5.7E-07 53.3 3.3 23 155-177 461-483 (986)
363 1zcb_A G alpha I/13; GTP-bindi 94.7 0.016 5.6E-07 47.4 2.9 22 154-175 32-53 (362)
364 2ck3_D ATP synthase subunit be 94.7 0.074 2.5E-06 45.1 6.8 52 145-197 142-194 (482)
365 3qkt_A DNA double-strand break 94.7 0.022 7.5E-07 46.1 3.5 24 154-177 22-45 (339)
366 3zq6_A Putative arsenical pump 94.7 0.017 5.9E-07 46.4 2.9 24 156-179 15-38 (324)
367 3hdt_A Putative kinase; struct 94.6 0.026 8.8E-07 43.0 3.7 25 154-178 13-37 (223)
368 1w1w_A Structural maintenance 94.6 0.021 7E-07 47.8 3.3 24 155-178 26-49 (430)
369 3cnl_A YLQF, putative uncharac 94.6 0.035 1.2E-06 43.3 4.5 36 143-179 88-123 (262)
370 3qks_A DNA double-strand break 94.6 0.024 8.2E-07 42.4 3.3 23 155-177 23-45 (203)
371 3szr_A Interferon-induced GTP- 94.6 0.014 4.8E-07 51.1 2.2 25 154-178 44-68 (608)
372 1e69_A Chromosome segregation 94.5 0.018 6.2E-07 46.2 2.7 22 155-176 24-45 (322)
373 3ez2_A Plasmid partition prote 94.5 0.022 7.4E-07 47.1 3.2 27 153-179 106-133 (398)
374 2gks_A Bifunctional SAT/APS ki 94.5 0.057 2E-06 46.7 5.9 27 154-180 371-397 (546)
375 2ph1_A Nucleotide-binding prot 94.5 0.022 7.7E-07 44.1 3.1 27 154-180 17-44 (262)
376 1udx_A The GTP-binding protein 94.5 0.014 4.9E-07 48.7 2.0 24 155-178 157-180 (416)
377 3qf7_A RAD50; ABC-ATPase, ATPa 94.5 0.026 8.9E-07 46.2 3.5 22 155-176 23-44 (365)
378 2hjg_A GTP-binding protein ENG 94.4 0.048 1.6E-06 45.6 5.2 43 137-179 150-199 (436)
379 2iw3_A Elongation factor 3A; a 94.4 0.014 4.6E-07 53.8 1.9 25 154-178 698-722 (986)
380 1qhl_A Protein (cell division 94.4 0.0035 1.2E-07 48.0 -1.7 23 157-179 29-51 (227)
381 1fx0_B ATP synthase beta chain 94.4 0.065 2.2E-06 45.6 5.8 51 146-197 155-206 (498)
382 4djt_A GTP-binding nuclear pro 94.3 0.02 7E-07 42.6 2.4 24 155-178 11-34 (218)
383 4aby_A DNA repair protein RECN 94.2 0.011 3.6E-07 49.0 0.7 24 155-178 60-83 (415)
384 2zts_A Putative uncharacterize 94.2 0.035 1.2E-06 42.1 3.6 40 155-195 30-69 (251)
385 1jwy_B Dynamin A GTPase domain 94.1 0.033 1.1E-06 44.1 3.3 25 154-178 23-47 (315)
386 3mfy_A V-type ATP synthase alp 94.1 0.072 2.4E-06 46.0 5.5 50 145-198 216-266 (588)
387 2wkq_A NPH1-1, RAS-related C3 94.0 0.03 1E-06 44.5 2.9 26 154-179 154-179 (332)
388 1puj_A YLQF, conserved hypothe 94.0 0.06 2E-06 42.4 4.6 26 154-179 119-144 (282)
389 2r6a_A DNAB helicase, replicat 93.9 0.038 1.3E-06 46.5 3.6 40 155-195 203-242 (454)
390 1ewq_A DNA mismatch repair pro 93.9 0.034 1.2E-06 50.0 3.3 23 155-177 576-598 (765)
391 3ux8_A Excinuclease ABC, A sub 93.8 0.019 6.4E-07 50.8 1.6 22 155-176 348-369 (670)
392 3o47_A ADP-ribosylation factor 93.8 0.026 9E-07 45.4 2.3 23 156-178 166-188 (329)
393 4dcu_A GTP-binding protein ENG 93.8 0.037 1.3E-06 46.6 3.2 25 154-178 22-46 (456)
394 2ohf_A Protein OLA1, GTP-bindi 93.8 0.034 1.2E-06 46.1 2.9 24 155-178 22-45 (396)
395 3cio_A ETK, tyrosine-protein k 93.7 0.075 2.6E-06 42.2 4.8 29 152-180 101-130 (299)
396 2b8t_A Thymidine kinase; deoxy 93.7 0.051 1.8E-06 41.4 3.6 26 154-179 11-36 (223)
397 1wb9_A DNA mismatch repair pro 93.7 0.039 1.3E-06 49.9 3.3 24 154-177 606-629 (800)
398 3ux8_A Excinuclease ABC, A sub 93.6 0.031 1.1E-06 49.4 2.6 19 154-172 43-61 (670)
399 3ez9_A Para; DNA binding, wing 93.6 0.021 7.3E-07 47.2 1.4 27 153-179 109-136 (403)
400 3g5u_A MCG1178, multidrug resi 93.6 0.032 1.1E-06 53.0 2.8 25 154-178 1058-1082(1284)
401 3c5h_A Glucocorticoid receptor 93.5 0.038 1.3E-06 42.7 2.7 22 156-177 20-50 (255)
402 2woo_A ATPase GET3; tail-ancho 93.5 0.055 1.9E-06 43.6 3.7 27 154-180 18-44 (329)
403 3dpu_A RAB family protein; roc 93.5 0.036 1.2E-06 47.6 2.7 24 156-179 42-65 (535)
404 3bfv_A CAPA1, CAPB2, membrane 93.5 0.08 2.7E-06 41.4 4.5 29 152-180 79-108 (271)
405 3tqf_A HPR(Ser) kinase; transf 93.5 0.054 1.9E-06 39.7 3.2 23 156-178 17-39 (181)
406 2woj_A ATPase GET3; tail-ancho 93.4 0.053 1.8E-06 44.2 3.5 28 153-180 15-43 (354)
407 3vr4_A V-type sodium ATPase ca 93.4 0.12 4.1E-06 44.7 5.7 48 145-196 221-269 (600)
408 3tr5_A RF-3, peptide chain rel 93.3 0.047 1.6E-06 47.0 3.1 23 154-176 12-34 (528)
409 3t34_A Dynamin-related protein 93.1 0.06 2.1E-06 43.7 3.3 25 154-178 33-57 (360)
410 3e1s_A Exodeoxyribonuclease V, 93.0 0.063 2.2E-06 46.7 3.5 36 143-180 194-229 (574)
411 2q6t_A DNAB replication FORK h 93.0 0.11 3.6E-06 43.6 4.7 40 155-195 200-239 (444)
412 3g5u_A MCG1178, multidrug resi 92.9 0.044 1.5E-06 52.1 2.6 25 154-178 415-439 (1284)
413 3l0i_B RAS-related protein RAB 92.9 0.016 5.4E-07 42.7 -0.4 23 155-177 33-55 (199)
414 4f4c_A Multidrug resistance pr 92.9 0.053 1.8E-06 51.7 3.1 25 154-178 443-467 (1321)
415 3ec1_A YQEH GTPase; atnos1, at 92.9 0.14 4.8E-06 41.9 5.2 39 137-178 147-185 (369)
416 3thx_A DNA mismatch repair pro 92.9 0.057 1.9E-06 49.6 3.1 22 154-175 661-682 (934)
417 2x2e_A Dynamin-1; nitration, h 92.9 0.1 3.5E-06 42.3 4.4 38 141-178 11-54 (353)
418 3bgw_A DNAB-like replicative h 92.9 0.13 4.3E-06 43.3 5.1 40 154-195 196-235 (444)
419 3q5d_A Atlastin-1; G protein, 92.8 0.097 3.3E-06 44.0 4.3 38 141-178 51-90 (447)
420 2h5e_A Peptide chain release f 92.8 0.069 2.4E-06 45.9 3.4 25 154-178 12-36 (529)
421 3gqb_A V-type ATP synthase alp 92.7 0.13 4.3E-06 44.4 4.9 48 145-196 210-258 (578)
422 3h2y_A GTPase family protein; 92.7 0.15 5.1E-06 41.7 5.1 39 138-179 146-184 (368)
423 3thx_B DNA mismatch repair pro 92.7 0.047 1.6E-06 50.0 2.3 23 154-176 672-694 (918)
424 3la6_A Tyrosine-protein kinase 92.6 0.14 4.7E-06 40.4 4.7 29 152-180 89-118 (286)
425 3geh_A MNME, tRNA modification 92.6 0.082 2.8E-06 44.7 3.5 23 157-179 226-248 (462)
426 4f4c_A Multidrug resistance pr 92.5 0.035 1.2E-06 52.9 1.3 24 154-177 1104-1127(1321)
427 3vr4_D V-type sodium ATPase su 92.5 0.11 3.9E-06 43.7 4.3 51 146-196 141-194 (465)
428 4a1f_A DNAB helicase, replicat 92.4 0.093 3.2E-06 42.5 3.5 37 155-193 46-82 (338)
429 2ygr_A Uvrabc system protein A 92.4 0.042 1.4E-06 50.6 1.6 21 155-175 668-688 (993)
430 2o8b_B DNA mismatch repair pro 92.4 0.072 2.5E-06 49.5 3.1 21 155-175 789-809 (1022)
431 1of1_A Thymidine kinase; trans 92.3 0.062 2.1E-06 44.2 2.4 27 154-180 48-74 (376)
432 2qpt_A EH domain-containing pr 92.3 0.078 2.7E-06 45.8 3.1 26 154-179 64-89 (550)
433 1lnz_A SPO0B-associated GTP-bi 92.2 0.061 2.1E-06 43.7 2.2 24 155-178 158-181 (342)
434 3cf2_A TER ATPase, transitiona 92.2 0.2 6.7E-06 45.3 5.6 47 134-180 477-536 (806)
435 3cmw_A Protein RECA, recombina 92.1 0.15 5E-06 49.7 5.0 41 155-197 1082-1122(1706)
436 2vf7_A UVRA2, excinuclease ABC 92.1 0.042 1.4E-06 49.9 1.2 22 155-176 523-545 (842)
437 2r6f_A Excinuclease ABC subuni 91.9 0.039 1.4E-06 50.6 0.8 21 155-175 650-670 (972)
438 4ag6_A VIRB4 ATPase, type IV s 91.8 0.11 3.7E-06 42.7 3.4 26 155-180 35-60 (392)
439 1f5n_A Interferon-induced guan 91.7 0.097 3.3E-06 45.6 3.0 28 152-179 35-62 (592)
440 1w4r_A Thymidine kinase; type 91.7 0.15 5.1E-06 37.9 3.6 34 147-180 12-46 (195)
441 3auy_A DNA double-strand break 91.7 0.12 4.2E-06 42.1 3.5 24 154-177 24-47 (371)
442 3lvq_E ARF-GAP with SH3 domain 91.6 0.11 3.8E-06 44.0 3.2 24 156-179 323-346 (497)
443 3vkw_A Replicase large subunit 91.6 0.12 4.1E-06 43.5 3.3 25 153-177 159-183 (446)
444 2c61_A A-type ATP synthase non 91.5 0.15 5E-06 43.2 3.8 52 146-197 142-196 (469)
445 1zun_B Sulfate adenylate trans 91.5 0.082 2.8E-06 44.2 2.3 26 154-179 23-48 (434)
446 1q57_A DNA primase/helicase; d 91.5 0.2 6.8E-06 42.6 4.8 41 155-196 242-282 (503)
447 4ido_A Atlastin-1; GTPase, GTP 91.4 0.19 6.4E-06 42.4 4.3 42 136-177 46-89 (457)
448 1ko7_A HPR kinase/phosphatase; 91.4 0.13 4.4E-06 41.2 3.2 23 156-178 145-167 (314)
449 1dar_A EF-G, elongation factor 91.3 0.12 4.2E-06 45.9 3.3 25 154-178 11-35 (691)
450 3llm_A ATP-dependent RNA helic 91.2 0.14 4.8E-06 38.8 3.1 21 156-176 77-97 (235)
451 1w36_D RECD, exodeoxyribonucle 91.1 0.14 4.9E-06 44.7 3.4 25 155-179 164-188 (608)
452 3gqb_B V-type ATP synthase bet 91.0 0.2 6.8E-06 42.2 4.0 36 146-181 137-173 (464)
453 2c78_A Elongation factor TU-A; 90.9 0.15 5E-06 42.2 3.2 27 152-178 8-34 (405)
454 2qe7_A ATP synthase subunit al 90.7 0.41 1.4E-05 40.8 5.7 48 146-197 152-202 (502)
455 2ck3_A ATP synthase subunit al 90.5 0.42 1.4E-05 40.8 5.7 52 146-197 152-210 (510)
456 3cmu_A Protein RECA, recombina 90.4 0.31 1.1E-05 48.2 5.4 44 154-199 382-425 (2050)
457 3cmw_A Protein RECA, recombina 90.4 0.27 9.4E-06 47.9 5.0 44 154-199 382-425 (1706)
458 4akg_A Glutathione S-transfera 90.3 0.18 6.3E-06 51.2 3.8 45 153-202 1607-1651(2695)
459 3gee_A MNME, tRNA modification 90.3 0.12 4E-06 43.9 2.1 21 158-178 236-256 (476)
460 4dcu_A GTP-binding protein ENG 90.3 0.34 1.2E-05 40.7 5.0 42 137-178 170-218 (456)
461 4b3f_X DNA-binding protein smu 90.2 0.33 1.1E-05 42.7 5.0 53 142-200 194-247 (646)
462 2r9v_A ATP synthase subunit al 90.2 0.41 1.4E-05 40.8 5.4 48 146-197 165-215 (515)
463 1n0u_A EF-2, elongation factor 90.1 0.21 7.1E-06 45.5 3.7 26 153-178 17-42 (842)
464 1osn_A Thymidine kinase, VZV-T 89.9 0.15 5.3E-06 41.3 2.5 26 155-180 12-38 (341)
465 3pih_A Uvrabc system protein A 89.9 0.15 5.2E-06 46.7 2.6 19 155-173 610-628 (916)
466 2gk6_A Regulator of nonsense t 89.8 0.25 8.5E-06 43.3 3.9 40 156-197 196-235 (624)
467 2elf_A Protein translation elo 89.7 0.14 4.8E-06 41.9 2.1 22 155-176 21-42 (370)
468 3p26_A Elongation factor 1 alp 89.5 0.18 6.3E-06 42.7 2.7 26 153-178 31-56 (483)
469 1ihu_A Arsenical pump-driving 89.3 0.38 1.3E-05 41.7 4.7 36 144-179 316-351 (589)
470 1knx_A Probable HPR(Ser) kinas 89.1 0.23 7.9E-06 39.7 2.9 22 156-177 148-169 (312)
471 3e2i_A Thymidine kinase; Zn-bi 89.1 0.56 1.9E-05 35.5 4.8 27 154-180 27-54 (219)
472 3czq_A Putative polyphosphate 88.8 0.79 2.7E-05 36.4 5.8 29 154-182 85-113 (304)
473 3izq_1 HBS1P, elongation facto 88.6 0.24 8.3E-06 43.3 2.9 33 146-178 157-190 (611)
474 3mca_A HBS1, elongation factor 88.6 0.35 1.2E-05 42.1 3.9 25 154-178 176-200 (592)
475 4a9a_A Ribosome-interacting GT 88.5 0.19 6.5E-06 41.3 2.0 25 154-178 71-95 (376)
476 3oaa_A ATP synthase subunit al 88.4 0.74 2.5E-05 39.2 5.6 48 146-197 152-202 (513)
477 3dzd_A Transcriptional regulat 88.2 0.8 2.8E-05 37.3 5.6 46 136-182 131-179 (368)
478 3vkg_A Dynein heavy chain, cyt 88.1 0.31 1.1E-05 50.2 3.6 62 136-202 1625-1688(3245)
479 3j2k_7 ERF3, eukaryotic polype 87.9 0.32 1.1E-05 40.7 3.2 25 154-178 16-40 (439)
480 4ad8_A DNA repair protein RECN 87.9 0.14 4.8E-06 43.8 0.9 25 154-178 59-83 (517)
481 1xzp_A Probable tRNA modificat 87.8 0.12 4.1E-06 43.9 0.5 24 156-179 244-267 (482)
482 1r5b_A Eukaryotic peptide chai 87.8 0.22 7.4E-06 42.1 2.0 26 152-177 40-65 (467)
483 1cip_A Protein (guanine nucleo 87.4 0.34 1.2E-05 39.4 2.9 22 155-176 32-53 (353)
484 1fx0_A ATP synthase alpha chai 87.0 0.43 1.5E-05 40.7 3.4 40 154-197 162-203 (507)
485 2j69_A Bacterial dynamin-like 86.9 0.37 1.3E-05 42.9 3.1 26 154-179 68-93 (695)
486 1ny5_A Transcriptional regulat 86.9 0.94 3.2E-05 37.1 5.3 43 136-179 139-184 (387)
487 3vqt_A RF-3, peptide chain rel 86.8 0.4 1.4E-05 41.4 3.1 23 154-176 30-52 (548)
488 3qq5_A Small GTP-binding prote 86.5 0.086 2.9E-06 44.1 -1.2 25 154-178 33-57 (423)
489 3cmu_A Protein RECA, recombina 86.1 0.94 3.2E-05 44.9 5.5 46 154-201 1774-1819(2050)
490 1wb1_A Translation elongation 85.9 0.42 1.4E-05 40.5 2.8 23 156-178 20-42 (482)
491 2vf7_A UVRA2, excinuclease ABC 85.4 0.41 1.4E-05 43.5 2.6 20 155-174 36-55 (842)
492 1e9r_A Conjugal transfer prote 85.2 0.58 2E-05 38.8 3.3 25 155-179 53-77 (437)
493 2wjy_A Regulator of nonsense t 85.0 0.64 2.2E-05 42.0 3.7 24 156-179 372-395 (800)
494 2j9r_A Thymidine kinase; TK1, 84.8 0.82 2.8E-05 34.4 3.7 27 154-180 27-53 (214)
495 2fz4_A DNA repair protein RAD2 84.7 2.3 7.8E-05 32.1 6.2 22 158-179 111-132 (237)
496 1azs_C GS-alpha; complex (lyas 84.3 0.58 2E-05 38.7 2.9 22 155-176 40-61 (402)
497 2ius_A DNA translocase FTSK; n 83.2 0.68 2.3E-05 39.6 2.9 25 155-179 167-191 (512)
498 4akg_A Glutathione S-transfera 82.6 1.5 5E-05 44.9 5.3 41 156-201 646-686 (2695)
499 2olr_A Phosphoenolpyruvate car 82.5 0.69 2.3E-05 39.7 2.6 19 155-173 241-259 (540)
500 1ytm_A Phosphoenolpyruvate car 82.5 0.68 2.3E-05 39.7 2.6 18 156-173 236-253 (532)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.65 E-value=1.6e-16 Score=138.06 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=59.0
Q ss_pred cchHHHHHHHHHhhcCC---CccEEEEEcCCCCcHHHHHHHHHH--HhccCCCCceEEEEEcCCCC--ChHhh
Q 046665 137 ESRKSTLKEILGSLSNH---NFNMIGVYGMGGIGKTMLVKEVAG--QAKGNNLFEKVISAQVSQTP--QIKKI 202 (204)
Q Consensus 137 ~g~~~~~~~l~~~L~~~---~~~vI~IvG~gGiGKTTLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~i 202 (204)
+||+.++++|.++|..+ +.++|+|+||||+||||||+++|+ +.+++.+|++++||+||+.+ ++.++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 203 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDL 203 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHH
Confidence 59999999999999743 689999999999999999999999 67888899999999999985 55554
No 2
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.51 E-value=3.2e-14 Score=98.81 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q 046665 3 IVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSH-----------IEEWLISVDEVISEVRKLIEV 71 (204)
Q Consensus 3 ~v~~~l~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~el~~l~~~l~~~-----------~~~wl~~vr~~~~d~ed~ld~ 71 (204)
+|+++++||++.+.. ++.++.+++++++.|+++|+.|++++.++ ++.|+.+||+++||+||+||+
T Consensus 2 ~v~~ll~KL~~ll~~----E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~ 77 (115)
T 3qfl_A 2 AISNLIPKLGELLTE----EFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDK 77 (115)
T ss_dssp TTCSHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH----HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788898888875 55788999999999999999999999886 789999999999999999999
Q ss_pred HHh
Q 046665 72 EEK 74 (204)
Q Consensus 72 ~~~ 74 (204)
|..
T Consensus 78 f~~ 80 (115)
T 3qfl_A 78 FLV 80 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 954
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.43 E-value=5.5e-14 Score=128.12 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=60.5
Q ss_pred ccchHHHHHHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCce-EEEEEcCCCCChHhh
Q 046665 136 FESRKSTLKEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEK-VISAQVSQTPQIKKI 202 (204)
Q Consensus 136 ~~g~~~~~~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i 202 (204)
.+||+.++++|.++|.+ ++.++|+|+||||+||||||+++|++.+++.+|++ ++||++++.++...+
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~I 198 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHH
Confidence 48999999999999975 56899999999999999999999998877778997 999999999987654
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.32 E-value=8.8e-13 Score=123.25 Aligned_cols=66 Identities=24% Similarity=0.344 Sum_probs=55.8
Q ss_pred CccccchHHHHHHHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcc-CCCC-ceEEEEEcCCCCC
Q 046665 133 FIHFESRKSTLKEILGSLS--NHNFNMIGVYGMGGIGKTMLVKEVAGQAKG-NNLF-EKVISAQVSQTPQ 198 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~--~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~ 198 (204)
...++||+.++++|.++|. +++.++|+|+||||+||||||+++|++.+. ..+| +.+.||++++.++
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 4569999999999999995 457899999999999999999999998643 4445 5677999998654
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.24 E-value=4.5e-12 Score=110.70 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=55.8
Q ss_pred CccccchHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhcc-CCCC-ceEEEEEcCCC
Q 046665 133 FIHFESRKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAKG-NNLF-EKVISAQVSQT 196 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~~-~~~F-~~~~wv~vs~~ 196 (204)
...++||+.+++.|.++|.. ++.++|+|+||||+||||||+.+|++.++ ..+| +.++|+++++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 45689999999999999973 56889999999999999999999998654 5679 57999999876
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.43 E-value=3.5e-07 Score=74.00 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=45.3
Q ss_pred CccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 133 FIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
+..++||+.+.+.|.+++..+ +++.|+|++|+|||||++.+.+.. . .+|+.++.
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~ 64 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRE 64 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeec
Confidence 467899999999999988754 799999999999999999999864 1 66776543
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.39 E-value=2.1e-07 Score=77.29 Aligned_cols=68 Identities=15% Similarity=0.087 Sum_probs=48.4
Q ss_pred CccccchHHHHHHHHHhh-c----C--CCccEEEE--EcCCCCcHHHHHHHHHHHhccC---CCCce-EEEEEcCCCCCh
Q 046665 133 FIHFESRKSTLKEILGSL-S----N--HNFNMIGV--YGMGGIGKTMLVKEVAGQAKGN---NLFEK-VISAQVSQTPQI 199 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L-~----~--~~~~vI~I--vG~gGiGKTTLa~~v~~~~~~~---~~F~~-~~wv~vs~~~~~ 199 (204)
+..++||+.+++.|..+| . . .....+.| +|++|+|||||++.+++..... ..|+. .+|+..+...+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367899999999999988 3 2 24455555 9999999999999999875431 12332 577776555444
Q ss_pred H
Q 046665 200 K 200 (204)
Q Consensus 200 ~ 200 (204)
.
T Consensus 101 ~ 101 (412)
T 1w5s_A 101 Y 101 (412)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.38 E-value=7.6e-07 Score=72.16 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=45.8
Q ss_pred CCccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 132 GFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 132 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
.+..++||+.+.+.|.+ +.. +++.|+|++|+|||||++.+.+.... . .+|+....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~----~-~~~~~~~~ 65 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL----P-YIYLDLRK 65 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC----C-EEEEEGGG
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC----C-EEEEEchh
Confidence 34678999999999999 765 69999999999999999999987642 2 57887764
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.32 E-value=6.8e-07 Score=73.19 Aligned_cols=63 Identities=27% Similarity=0.295 Sum_probs=48.1
Q ss_pred CccccchHHHHHHHHHhhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCC-CceEEEEEcCC
Q 046665 133 FIHFESRKSTLKEILGSLS----NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNL-FEKVISAQVSQ 195 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~-F~~~~wv~vs~ 195 (204)
+..++||+.+++.+.+++. .+....+.|+|++|+|||||++.+.+....... --..+|+..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 3678999999999999887 345779999999999999999999987542210 12356776543
No 10
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.30 E-value=1e-06 Score=64.72 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=41.4
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|++..++.+.+++.......+-|+|..|+||||||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999987777778999999999999999999875
No 11
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.25 E-value=2.4e-06 Score=64.30 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=40.8
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|++..++.+.+++.......+-|+|.+|+||||||+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999987766669999999999999999999865
No 12
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.20 E-value=1.8e-06 Score=63.26 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=41.2
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|++...+.+.+++.......+-|+|..|+||||||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999987767778899999999999999999875
No 13
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.19 E-value=3.8e-06 Score=68.79 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=49.4
Q ss_pred CccccchHHHHHHHHHhhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCceEEEEEcCCCCC
Q 046665 133 FIHFESRKSTLKEILGSLSN----HNFNMIGVYGMGGIGKTMLVKEVAGQAKGN----NLFEKVISAQVSQTPQ 198 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~F~~~~wv~vs~~~~ 198 (204)
+..++|++.+++.+..+|.. ...+.+.|+|++|+||||||+.+.+..... ..--..+|+..+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 91 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET 91 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence 36789999999999998843 467789999999999999999999875321 0012357777665444
No 14
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.16 E-value=7.6e-06 Score=67.18 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=49.5
Q ss_pred ccccchHHHHHHHHHhhcC----CCcc--EEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665 134 IHFESRKSTLKEILGSLSN----HNFN--MIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI 199 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~----~~~~--vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 199 (204)
..++||+.+++.+..+|.. .... .+.|+|..|+|||||++.+.+.......+ ..+|+..+...+.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA-RFVYINGFIYRNF 87 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCC-EEEEEETTTCCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCe-eEEEEeCccCCCH
Confidence 5689999999999998864 3334 89999999999999999999876533112 3677776665543
No 15
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.10 E-value=2.4e-06 Score=70.17 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=46.8
Q ss_pred ccccchHHHHHHHHHhhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccC----CC--CceEEEEEcCC
Q 046665 134 IHFESRKSTLKEILGSLS----NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN----NL--FEKVISAQVSQ 195 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~--F~~~~wv~vs~ 195 (204)
..++||+.+++.+..+|. .+..+.+.|+|++|+||||||+.+++..... .. .-..+|+..+.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 568999999999887764 3456799999999999999999999875221 11 23467776554
No 16
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.05 E-value=4.8e-06 Score=63.30 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=40.6
Q ss_pred ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|++..++.+..++..+. .+.+.|+|++|+||||||+.+.+...
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 458999999999999987543 46899999999999999999998764
No 17
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=4.8e-06 Score=66.64 Aligned_cols=69 Identities=23% Similarity=0.293 Sum_probs=49.1
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI 202 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 202 (204)
..++|++..++.+.+++..+....+-++|++|+||||+|+.+.+.......-...+++..+.......+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i 89 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV 89 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH
Confidence 458899999999999998776655999999999999999999987532111112455555544444333
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=2.4e-05 Score=62.57 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|++..++.+.+++..+....+-++|+.|+||||+|+.+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4588999999999999987766669999999999999999999874
No 19
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.73 E-value=8.5e-05 Score=56.55 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 140 KSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 140 ~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
+...+.+..++.......+-|+|..|+||||||+.+.+..... .....|+..+.
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~ 90 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 4556667666666567889999999999999999999876533 23456666553
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.70 E-value=5.4e-05 Score=59.67 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=39.3
Q ss_pred CccccchHHHHHHHHHhhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSLSN-------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
-..++|.+..++.|...+.. ....-+-|+|..|+||||||+.+.+...
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45688999999888887632 3456799999999999999999998754
No 21
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.66 E-value=7.1e-05 Score=55.95 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCC----CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665 141 STLKEILGSLSNH----NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS 194 (204)
Q Consensus 141 ~~~~~l~~~L~~~----~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 194 (204)
...+.+..++... ....+-|+|.+|+||||||+.+++....+ ....++++.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~ 91 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH
Confidence 3455566666532 22789999999999999999999986533 3346666653
No 22
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.61 E-value=7.9e-05 Score=55.93 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhhcC---CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 139 RKSTLKEILGSLSN---HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 139 ~~~~~~~l~~~L~~---~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+++..+.|.+.+.. ....+|+|.|..|+|||||++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566777777754 356799999999999999999998754
No 23
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.60 E-value=9.3e-05 Score=58.92 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=40.4
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|++..++.+.+++..+....+-++|..|+||||+|+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 4588999999999999987766569999999999999999999874
No 24
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.59 E-value=7.3e-05 Score=63.54 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=40.2
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|++..+..++..|......-+-++|.+|+||||||+.+.+..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999976655566799999999999999999875
No 25
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.59 E-value=0.00011 Score=58.57 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHHhhc---------------CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 135 HFESRKSTLKEILGSLS---------------NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~---------------~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++|.+..++.|.+++. ......+-++|..|+||||||+.+.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 47888888777776543 23455789999999999999998887654
No 26
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.58 E-value=0.00014 Score=58.31 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHhhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSN-----HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|++..+..+..++.. .....+-|+|..|+||||||+.+.+...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999888888887752 3456788999999999999999998764
No 27
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.57 E-value=4.8e-05 Score=61.61 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|++..++.+..++..+....+-++|..|+||||||+.+.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987755558999999999999999998874
No 28
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.57 E-value=6.7e-05 Score=55.12 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 139 RKSTLKEILGSLSN---HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 139 ~~~~~~~l~~~L~~---~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.....+.+.+++.+ .....+.|+|..|+|||||++.+.+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44445555555543 3457899999999999999999998753
No 29
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.56 E-value=9.4e-05 Score=55.78 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 141 STLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 141 ~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+.|.+.+.+ ....+|+|+|..|+|||||++.+..-..
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345566666653 4567999999999999999999987644
No 30
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.55 E-value=0.00018 Score=61.87 Aligned_cols=46 Identities=28% Similarity=0.332 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHHhhcC-----------------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSN-----------------HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~-----------------~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|++..++.+.+||.. +..+.+-|+|+.|+||||||+.+.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999864 134789999999999999999999876
No 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=7.6e-05 Score=60.59 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=38.3
Q ss_pred ccccchHHHHHHHHHhh-cCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 134 IHFESRKSTLKEILGSL-SNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L-~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..++|.+...+.+.+++ ..+....+.|+|..|+|||||++.+.+.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999998 6655444999999999999999999885
No 32
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.50 E-value=8.1e-05 Score=60.11 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=40.9
Q ss_pred ccccchHHHHHHHHHhhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLS----NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..+.||+++.+.|...|. .+....+-|+|+.|.|||++++.|.+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 347899999999988775 46788899999999999999999999875
No 33
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.49 E-value=0.00011 Score=52.20 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=33.5
Q ss_pred cccchHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 135 HFESRKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.++|......++.+.+.. ....-|-|+|..|+|||+||+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 467887788887776642 233446799999999999999999864
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.48 E-value=0.00037 Score=53.97 Aligned_cols=47 Identities=23% Similarity=0.195 Sum_probs=35.1
Q ss_pred ccccchHHHHHHHHHhh---cC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSL---SN---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L---~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.|.+++ .. ...+-+-++|..|+||||||+.+.+...
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788887776665543 22 2345678999999999999999998764
No 35
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.47 E-value=0.00013 Score=59.43 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=40.1
Q ss_pred ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|++..++.+.+++..+. .+.+-|+|..|+||||||+.+.+...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 458999999999999887654 46788999999999999999988754
No 36
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.46 E-value=0.00023 Score=56.36 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=38.0
Q ss_pred ccccchHHHHHHHHHhhcC------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSN------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.+..++.. ...+-+-|+|..|+||||||+.+.+...
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4688999988888877631 2356889999999999999999998653
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.46 E-value=0.00015 Score=58.57 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHhhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSN-----HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|++..++.+..++.. .....+-|+|..|+||||||+.+.+...
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 5689999999988888752 3456789999999999999999987643
No 38
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.44 E-value=0.00018 Score=57.42 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=37.3
Q ss_pred ccccchHHHHHHHHHhhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSN-------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++.|.+..++.|.+++.. ...+.|.++|..|+||||||+.+.+...
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4588988887777776531 3456799999999999999999998654
No 39
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.41 E-value=0.00013 Score=61.65 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=40.1
Q ss_pred ccccchHHHH---HHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTL---KEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~---~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..+ ..|...+..+....+-++|..|+||||||+.+.+...
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4688988877 6777777777788899999999999999999998754
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.40 E-value=0.00025 Score=57.84 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=37.5
Q ss_pred ccccchHHHHHH---HHHhhcCCCc--cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 134 IHFESRKSTLKE---ILGSLSNHNF--NMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 134 ~~~~g~~~~~~~---l~~~L~~~~~--~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
..++|++..++. +.+.+..+.. +.+-|+|+.|+||||||+.+.+....
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468899887665 4555555443 58999999999999999999998763
No 41
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.39 E-value=0.00019 Score=58.18 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|.+..++.|..++..+.+.-+.++|+.|+||||||+.+.+..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4467888888888888887766558999999999999999998764
No 42
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.37 E-value=0.00013 Score=59.17 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHHhhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSN-----HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.+-..+.. .....+.++|+.|+||||||+.+.+...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3467777666666555532 3457899999999999999999998764
No 43
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.32 E-value=0.00019 Score=65.37 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|++.++..+++.|.....+-+.++|.+|+||||||+.+.+..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987666667899999999999999999875
No 44
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.31 E-value=0.0004 Score=56.82 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=38.1
Q ss_pred ccccchHHHHHHHHHhhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLS------------NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~------------~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.|.+.+. ....+-|-|+|..|+||||||+.+.+...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899998888887763 13466899999999999999999998653
No 45
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.29 E-value=0.00028 Score=53.41 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+.+-..+......+|.|+|.+|+|||||+..+.....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34444444455788999999999999999999987743
No 46
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.28 E-value=0.00027 Score=63.45 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=40.4
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|++..++.++..|......-+-++|.+|+||||+|+.+.+..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999977655567899999999999999999874
No 47
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.28 E-value=0.00029 Score=55.85 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=37.5
Q ss_pred ccccchHHHHHHHHHhhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSN--------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~--------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.+...+.. ....-+-++|..|+||||||+.+.+...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999888888776643 2355688999999999999999998764
No 48
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.27 E-value=0.00019 Score=53.64 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=25.0
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 152 NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.....+|.|+|+.|+|||||++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999987654
No 49
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.27 E-value=0.00034 Score=62.79 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=40.8
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|++..+..+++.|......-+-++|..|+||||||+.+.+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987766777899999999999999999864
No 50
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.27 E-value=0.00019 Score=53.71 Aligned_cols=27 Identities=33% Similarity=0.286 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|.|+|+.|+||||+++.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987653
No 51
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.26 E-value=0.00019 Score=53.69 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....+|+|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 356799999999999999999998765
No 52
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.24 E-value=0.00023 Score=53.68 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=32.2
Q ss_pred chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+.+...+.+...+......+|.|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 444455555555555678899999999999999999988764
No 53
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.23 E-value=0.00014 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEV 175 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v 175 (204)
.-.+++|+|..|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999999953
No 54
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.22 E-value=0.00043 Score=53.70 Aligned_cols=47 Identities=28% Similarity=0.319 Sum_probs=34.2
Q ss_pred ccccchHHHHHHHHHh---hcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGS---LSNH---------NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~---L~~~---------~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+..++.+... +... ..+-+.|+|..|+||||||+.+.+...
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4678888766655443 3221 234588999999999999999998754
No 55
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.22 E-value=0.00034 Score=55.76 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+...+|+|+|..|+|||||++.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4577999999999999999999887543
No 56
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.22 E-value=0.00058 Score=55.10 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=36.6
Q ss_pred CccccchHHHHHHHHHhhc---------C---CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 133 FIHFESRKSTLKEILGSLS---------N---HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~---------~---~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
-.++.|.+..++.|.+.+. . ...+-|-++|+.|+|||+||+.+.+..
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3567898888777776552 1 134678999999999999999999875
No 57
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.21 E-value=0.0002 Score=53.54 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..+|.|.|+.|+||||||+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999987653
No 58
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.20 E-value=0.00068 Score=54.56 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=38.1
Q ss_pred CccccchHHHHHHHHHhhc----------C--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSLS----------N--HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~----------~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
-..++|.+..++.|...+. . ...+-+-++|..|+|||+||+.+.+...
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 3568899999888888762 1 1245789999999999999999998754
No 59
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=97.19 E-value=0.0002 Score=57.74 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
++.+||+|.|-|||||||.+-.+---
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a 71 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA 71 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH
Confidence 36899999999999999988877654
No 60
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.17 E-value=0.00052 Score=55.02 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=40.1
Q ss_pred ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+.....+.+++..+. .+++-+.|..|+||||+|+.+.+...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 568899999999999998655 46778889999999999999998753
No 61
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.17 E-value=0.00055 Score=55.96 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=32.5
Q ss_pred cchHHHHHHHHHhhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 137 ESRKSTLKEILGSLS----NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 137 ~g~~~~~~~l~~~L~----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
++.+...+.+++.|. .+....|.|+|+.|+||||+++.+.....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344555666666653 45566799999999999999998887643
No 62
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.16 E-value=0.00033 Score=50.10 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS 194 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 194 (204)
.-..+.|+|..|+|||||++.+++..... .+. .+++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~-~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKN-AAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCC-EEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCc-EEEEcHH
Confidence 56789999999999999999999876432 122 4555544
No 63
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.14 E-value=0.00032 Score=50.78 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.+..+|.|.|+.|+||||+++.+-+.
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999998765
No 64
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.14 E-value=0.00032 Score=54.15 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|+|+|+.|+|||||++.+.+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999996543
No 65
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.12 E-value=0.00043 Score=52.05 Aligned_cols=44 Identities=20% Similarity=0.100 Sum_probs=33.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI 202 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 202 (204)
.-.++.|+|.+|+|||||+..+.. .. =..++|++....++...+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~ 62 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERL 62 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHH
Confidence 346999999999999999999987 21 235788887765555443
No 66
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.11 E-value=0.0003 Score=52.74 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...+|.|+|+.|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999998764
No 67
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.11 E-value=0.00028 Score=53.06 Aligned_cols=26 Identities=15% Similarity=0.246 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|..|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45699999999999999999998754
No 68
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.10 E-value=0.00034 Score=51.18 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..+|.|+|+.|+||||+++.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 467889999999999999999865
No 69
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.09 E-value=0.00035 Score=55.55 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHHhhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 135 HFESRKSTLKEILGSLSNH---------NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~~~---------~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++|.+..++.+...+... ....+.++|..|+||||||+.+.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 4678888777777766431 235899999999999999999998753
No 70
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.09 E-value=0.00012 Score=51.93 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=31.7
Q ss_pred cccchHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 135 HFESRKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.++|.+..+.++.+.+.. ....-|-|+|..|+|||+||+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 467877777777776542 233346799999999999999998753
No 71
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.08 E-value=0.00031 Score=56.53 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....+|+|+|..|+|||||++.+..-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4567999999999999999999997654
No 72
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.07 E-value=0.0008 Score=55.59 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=38.5
Q ss_pred CccccchHHHHHHHHHhhcC------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSLSN------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
-..++|.+..+..|..++.. ...+-+-|+|..|+|||+||+.+.+...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 35689999999888887721 2346789999999999999999987643
No 73
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.07 E-value=0.0012 Score=49.83 Aligned_cols=46 Identities=26% Similarity=0.201 Sum_probs=32.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCceEEEEEcCCCCChH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGN----NLFEKVISAQVSQTPQIK 200 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~ 200 (204)
-.+++|+|..|+|||||++.+....... ..-...+|+.-...++..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 4699999999999999999998743221 013457787765544443
No 74
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.07 E-value=0.00069 Score=53.02 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=32.7
Q ss_pred cccchHHHHHHHHH-------hhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 135 HFESRKSTLKEILG-------SLS---NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 135 ~~~g~~~~~~~l~~-------~L~---~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++|.....+.+++ .+. .....-+-|+|..|+||||||+.+.+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 35565555444444 332 34567889999999999999999998744
No 75
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.06 E-value=0.00031 Score=53.47 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998753
No 76
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.06 E-value=0.00036 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...+|+|+|..|+|||||++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999864
No 77
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.06 E-value=0.00034 Score=54.05 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...+|+|.|..|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998754
No 78
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.06 E-value=0.00098 Score=50.83 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=34.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCceEEEEEcCCCCChH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNN----LFEKVISAQVSQTPQIK 200 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~ 200 (204)
.-.++.|+|..|+|||||++.+........ .-..++|+.....++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~ 73 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPE 73 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHH
Confidence 346999999999999999999987532211 12468888877765544
No 79
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.05 E-value=0.00038 Score=54.13 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...+|+|+|+.|+|||||++.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4569999999999999999999844
No 80
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.04 E-value=0.00039 Score=50.34 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..-.+++++|..|.|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345699999999999999999999764
No 81
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.02 E-value=0.00091 Score=51.71 Aligned_cols=47 Identities=28% Similarity=0.336 Sum_probs=31.9
Q ss_pred ccccchHHHHHHHHHh---hcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGS---LSNH---------NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~---L~~~---------~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|.+..+..+.+. +... -.+-+.|+|..|+|||||++.+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577877655544443 2210 112389999999999999999998654
No 82
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.02 E-value=0.00046 Score=55.36 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|+|+|.+|+|||||++.+..-..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999987644
No 83
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.02 E-value=0.00046 Score=50.82 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|.|+|+.|+||||+++.+.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999987654
No 84
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.02 E-value=0.00054 Score=51.10 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....+|.|.|+.|+||||+++.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998654
No 85
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.00 E-value=0.00056 Score=53.96 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=32.6
Q ss_pred ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++.|.+..++.|...+. . .-.+=+.++|+.|+||||||+.+.....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 456788777777665432 1 0112299999999999999999998654
No 86
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.98 E-value=0.0013 Score=52.79 Aligned_cols=39 Identities=33% Similarity=0.471 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCC--CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 142 TLKEILGSLSNH--NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 142 ~~~~l~~~L~~~--~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....+..++... ....+-|+|+.|+||||||+.+.+...
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 344455555443 457899999999999999999998753
No 87
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.97 E-value=0.0005 Score=53.58 Aligned_cols=47 Identities=26% Similarity=0.337 Sum_probs=32.3
Q ss_pred ccccchHHHHHHHHHhhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLS---N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~---~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.+.+.+. . ...+-+-++|..|+||||||+.+.+...
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 456776665555544332 1 1233477999999999999999998754
No 88
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.97 E-value=0.00056 Score=50.61 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..+|.|.|+.|+||||+++.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998753
No 89
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.97 E-value=0.0013 Score=55.33 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=37.6
Q ss_pred CccccchHHHHHHHHHhhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 133 FIHFESRKSTLKEILGSLS------------NHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~------------~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
-.++.|.+..++.|...+. ....+-|-++|+.|+|||+||+.+.+..
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3567899988888887652 1234678999999999999999999875
No 90
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.96 E-value=0.00069 Score=52.76 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=32.8
Q ss_pred cccchHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 135 HFESRKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++|.+.....+.+.+.. ....-|-|+|..|+|||+||+.+++...
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 467887777777665532 2335677999999999999999998643
No 91
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.96 E-value=0.00053 Score=53.19 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....+|+|.|+.|+||||+|+.+-....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567999999999999999999987544
No 92
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.96 E-value=0.0005 Score=52.46 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.-.+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 456999999999999999999997643
No 93
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.95 E-value=0.00044 Score=53.33 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999999853
No 94
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.95 E-value=0.001 Score=54.42 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=36.5
Q ss_pred ccccchHHHHHHHHHhhc---------C---CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLS---------N---HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~---------~---~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.|...+. . ...+-|-++|..|+|||+||+.+.+...
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 457898888888877652 1 1234588999999999999999998764
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.94 E-value=0.00049 Score=52.79 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 357999999999999999999883
No 96
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.93 E-value=0.0011 Score=52.67 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...+|-|.|+.|+|||||++.+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998753
No 97
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.92 E-value=0.00057 Score=52.92 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.. .+++|+|..|+|||||.+.+..-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 89999999999999999999864
No 98
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.92 E-value=0.00048 Score=52.71 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999853
No 99
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.92 E-value=0.00062 Score=51.15 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|.|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998753
No 100
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.90 E-value=0.0013 Score=53.37 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....+|+|+|..|+|||||++.+.....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999987644
No 101
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.89 E-value=0.001 Score=51.71 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...+|.++|+.|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998764
No 102
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.88 E-value=0.0021 Score=51.65 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=36.5
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|++..++.+...+..+ .-+-++|..|+|||+||+.+.+...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45778888888887777653 3678999999999999999988653
No 103
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.88 E-value=0.00046 Score=52.25 Aligned_cols=24 Identities=33% Similarity=0.264 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-.+++|+|..|+|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999864
No 104
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.87 E-value=0.00069 Score=54.27 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+++|+|..|+|||||++.+..-..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999987643
No 105
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.86 E-value=0.00093 Score=49.77 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|.|.|+.|+||||+|+.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999987653
No 106
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.86 E-value=0.00059 Score=52.70 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 107
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.85 E-value=0.00078 Score=54.42 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|+|.|..|+|||||++.+..-..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999987644
No 108
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.85 E-value=0.00064 Score=52.89 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999973
No 109
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.85 E-value=0.00059 Score=53.52 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999853
No 110
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.84 E-value=0.00077 Score=50.36 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.+-.+|+|+|+.|+||||+++.+-+.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999998765
No 111
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.83 E-value=0.00061 Score=53.84 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|+|||||++.+..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999985
No 112
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.83 E-value=0.00041 Score=52.99 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=16.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-HH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVA-GQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~-~~ 178 (204)
-.+|+|+|+.|+|||||++.+. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998 54
No 113
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.82 E-value=0.00081 Score=53.89 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....+|+|+|..|+|||||++.+..-..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4557999999999999999999987543
No 114
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.81 E-value=0.00066 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999853
No 115
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.81 E-value=0.00066 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999853
No 116
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.81 E-value=0.00068 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 117
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.81 E-value=0.00071 Score=54.01 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|+++|.+|+||||++..+.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999986654
No 118
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.80 E-value=0.00071 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999974
No 119
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.80 E-value=0.00097 Score=53.36 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 135 HFESRKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.++|....+..+.+.+.. ....-|-|+|..|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 467887777777776642 334557799999999999999999864
No 120
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.80 E-value=0.00068 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999999853
No 121
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.80 E-value=0.00069 Score=53.18 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 4568999999999999999999853
No 122
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.78 E-value=0.00096 Score=53.82 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=34.0
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..+..+...+......-+-++|..|+|||+||+.+.+...
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 45788877655544444333333488999999999999999998653
No 123
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.78 E-value=0.00064 Score=51.70 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999864
No 124
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.77 E-value=0.0018 Score=52.95 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHhhc-------------C--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 135 HFESRKSTLKEILGSLS-------------N--HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~-------------~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++|.+..++.+...+. . .....|-++|..|+|||++|+.+.+...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36788888888777662 1 1346789999999999999999998764
No 125
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.77 E-value=0.00088 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.599 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
...+|+|.|+.|+||||+|+.+-
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999987
No 126
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.76 E-value=0.00077 Score=52.38 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999864
No 127
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.76 E-value=0.00077 Score=52.19 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999853
No 128
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.75 E-value=0.00088 Score=52.19 Aligned_cols=26 Identities=31% Similarity=0.216 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
-.+|.|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987543
No 129
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.74 E-value=0.001 Score=50.03 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999987543
No 130
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.74 E-value=0.0008 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999853
No 131
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.74 E-value=0.00081 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999864
No 132
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.74 E-value=0.001 Score=54.60 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|+|+|..|+|||||++.+..-..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 357999999999999999999987644
No 133
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.74 E-value=0.0013 Score=52.25 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+..+-++|+.|+|||+||+.+.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456788999999999999999999875
No 134
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.73 E-value=0.00084 Score=52.91 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 135
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.72 E-value=0.0024 Score=52.11 Aligned_cols=48 Identities=23% Similarity=0.153 Sum_probs=34.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCC----ceEEEEEcCCCCChHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLF----EKVISAQVSQTPQIKK 201 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~ 201 (204)
.-.++.|+|..|+|||||+.++.......... ..++|+.-...+..+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 45799999999999999999999764211001 2458888766654443
No 136
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.71 E-value=0.0022 Score=52.59 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+-++|..|+||||||+.+.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998763
No 137
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.71 E-value=0.00087 Score=52.65 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999853
No 138
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.71 E-value=0.00087 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.487 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999999854
No 139
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.70 E-value=0.0019 Score=54.36 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 142 TLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 142 ~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....+........ ...+.|+|..|+||||||+.+.+...
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444455444433 77899999999999999999998753
No 140
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.70 E-value=0.0009 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 141
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.69 E-value=0.0009 Score=52.98 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999864
No 142
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.69 E-value=0.0011 Score=48.99 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 143
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.69 E-value=0.0022 Score=52.43 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=28.3
Q ss_pred HHHHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 143 LKEILGSLS--NHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 143 ~~~l~~~L~--~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...++..+. .+...+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554 3567899999999999999999987553
No 144
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0031 Score=52.88 Aligned_cols=48 Identities=31% Similarity=0.389 Sum_probs=37.8
Q ss_pred CccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
-.++.|.+..++.|.+.+. . ...+=|-++|++|.|||+||+.+.+...
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899988888777542 1 2356689999999999999999998765
No 145
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.66 E-value=0.0029 Score=53.41 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHH---hhcCC--CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILG---SLSNH--NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~---~L~~~--~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.+.. ++..+ ..+-+-++|+.|+|||+||+.+.+...
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 568899887775444 34333 235688999999999999999999865
No 146
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.65 E-value=0.0011 Score=53.10 Aligned_cols=27 Identities=30% Similarity=0.236 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|.|+|.+|+||||++..+.....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 467999999999999999999987654
No 147
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.65 E-value=0.0012 Score=51.80 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..-.+++|+|..|+|||||++.+..-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 45579999999999999999999864
No 148
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.64 E-value=0.0015 Score=49.72 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+.+||-|.|++|+||||.|+.+.+...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999999998754
No 149
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.62 E-value=0.0028 Score=54.09 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=37.0
Q ss_pred ccccchHHHHHHHHHhhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLS-------------NHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~-------------~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..+.|.+..+..|.+++. -....-+-|+|..|+|||+||+.+.+..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 457899988888877763 1345568999999999999999998865
No 150
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.60 E-value=0.0014 Score=55.95 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|+|+|..|+|||||++.+..-..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 356999999999999999999987644
No 151
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.59 E-value=0.0017 Score=55.60 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.+...+..+ .-|-++|..|+|||+||+.+.+...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 45778888888777766543 3678999999999999999998653
No 152
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.59 E-value=0.0012 Score=51.84 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=32.8
Q ss_pred CccccchHHHHHHHHHhh---cCC------C---ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSL---SNH------N---FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L---~~~------~---~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
-.+++|.+..+..+.+.. ... + .+-+.|+|..|+|||||++.+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 346778776655554432 110 1 12289999999999999999998654
No 153
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.57 E-value=0.0013 Score=52.31 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=23.4
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 152 NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....++|+|+|-||+||||+|-.+-.-..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La 66 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFS 66 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHH
Confidence 34678999999999999999988876543
No 154
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.56 E-value=0.0014 Score=52.49 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..-.+++|+|..|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456799999999999999999998754
No 155
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0044 Score=52.11 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=37.6
Q ss_pred CccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 133 FIHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
-.++.|.+..++.|...+. . ...+=|-++|++|.|||+||+.|.+....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3556788887777766542 2 24578999999999999999999997653
No 156
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.55 E-value=0.0014 Score=49.41 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
-.++.|+|..|+|||||++.+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998653
No 157
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.55 E-value=0.0013 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-.+++|+|..|+|||||.+.+..-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999853
No 158
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.52 E-value=0.0015 Score=50.49 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...++.+.|.||+|||||+..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357888999999999999999986544
No 159
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.51 E-value=0.0025 Score=53.57 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
..++|.++|.+|+||||++-.+-.....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998876543
No 160
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.50 E-value=0.0021 Score=49.55 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....+|.|.|+.|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998754
No 161
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0032 Score=52.89 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=37.8
Q ss_pred CccccchHHHHHHHHHhh----cC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSL----SN---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L----~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
-.++.|.+..++.|.+.+ .. ...+-|-++|++|.|||+||+.+.+...
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 355788988888877654 22 2367889999999999999999998765
No 162
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.50 E-value=0.0017 Score=52.46 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|+|+|.+|+||||++..+.....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999876543
No 163
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.50 E-value=0.0035 Score=50.22 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhcCC---CccEEEEEcCCCCcHHHHHHHHHHHhc-cCCCCceEEEEEc
Q 046665 140 KSTLKEILGSLSNH---NFNMIGVYGMGGIGKTMLVKEVAGQAK-GNNLFEKVISAQV 193 (204)
Q Consensus 140 ~~~~~~l~~~L~~~---~~~vI~IvG~gGiGKTTLa~~v~~~~~-~~~~F~~~~wv~v 193 (204)
......+.+++... ...-+-++|..|+|||+||+.+.+... .+ .+ .++++++
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g~-~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-GV-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-CC-CEEEEEH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEH
Confidence 34455555666532 256788999999999999999998755 32 12 3445554
No 164
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.49 E-value=0.0014 Score=52.09 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999999864
No 165
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.48 E-value=0.00093 Score=51.09 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4569999999999999999999875
No 166
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.47 E-value=0.0038 Score=52.53 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
...||.++|.+|+||||++..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998876553
No 167
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.47 E-value=0.0011 Score=53.21 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 457899999999999999999975
No 168
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.44 E-value=0.0047 Score=52.52 Aligned_cols=47 Identities=28% Similarity=0.360 Sum_probs=34.3
Q ss_pred ccccchHHHHHHHHHh---hcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGS---LSNH---------NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~---L~~~---------~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++.|.+..++++.+. +.+. -.+-|.++|+.|+||||||+.+.+...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4578888766665554 3221 134588999999999999999998764
No 169
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.43 E-value=0.0049 Score=50.07 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCceEEEEEcCCCCChHhh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNN----LFEKVISAQVSQTPQIKKI 202 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i 202 (204)
.-.++-|+|..|+|||||+.++..+..... .=..++|++....|+.+.+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l 173 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRL 173 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH
Confidence 346899999999999999999987633211 1246899999888876654
No 170
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.43 E-value=0.0038 Score=47.76 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=26.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCce
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEK 187 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~ 187 (204)
....|.|.|+.|+||||+++.+.+.... .++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~ 56 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV 56 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc
Confidence 4568999999999999999999988764 3544
No 171
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.43 E-value=0.0018 Score=53.25 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 4568999999999999999999863
No 172
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.41 E-value=0.0052 Score=49.47 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=36.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCC----CceEEEEEcCCCCChHhh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNL----FEKVISAQVSQTPQIKKI 202 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i 202 (204)
-.++-|+|..|+|||||+.++..+...... =..++|++...+|+.+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l 158 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERI 158 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH
Confidence 468999999999999999999876432110 246899999888776654
No 173
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.40 E-value=0.0019 Score=50.78 Aligned_cols=44 Identities=27% Similarity=0.310 Sum_probs=30.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCC--------CceEEEEEcCCCC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNL--------FEKVISAQVSQTP 197 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~--------F~~~~wv~vs~~~ 197 (204)
.-.++.|+|.+|+|||||+.++......... -..+++++...+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~ 80 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP 80 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH
Confidence 3569999999999999999999865432110 1246677665543
No 174
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.40 E-value=0.0018 Score=47.29 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
--|.++|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998763
No 175
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.40 E-value=0.0042 Score=49.81 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCC---------CC-----ceEEEEEcCCCCChHhhh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNN---------LF-----EKVISAQVSQTPQIKKIQ 203 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~iq 203 (204)
.-.++-|+|..|+||||||.++.-+..... .. ..++|++...+|+.+.+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~ 160 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM 160 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH
Confidence 346899999999999999999987532110 11 468999999888776553
No 176
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.39 E-value=0.0021 Score=51.27 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|+++|.+|+||||++..+.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999987654
No 177
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.38 E-value=0.0027 Score=48.58 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...+|+|+|+.|+||||+++.+...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998864
No 178
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.37 E-value=0.0021 Score=47.84 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=21.8
Q ss_pred HhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 148 GSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 148 ~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
++....+.--|.|+|..|+|||||...+.++.
T Consensus 23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33334455678999999999999999988753
No 179
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.37 E-value=0.002 Score=52.86 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|+.|+|||||.+.|.--
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4468999999999999999999863
No 180
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.37 E-value=0.0022 Score=46.91 Aligned_cols=23 Identities=35% Similarity=0.287 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
--|.|+|.+|+|||||++.+.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 45889999999999999888764
No 181
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.36 E-value=0.0092 Score=50.36 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=32.8
Q ss_pred chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
+....+..+..++.+++ +.+-|.|.+|.||||++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 34445566666666544 389999999999999999999876543
No 182
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.36 E-value=0.0028 Score=48.38 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...|.|.|+.|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999987654
No 183
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.36 E-value=0.0036 Score=54.75 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=36.1
Q ss_pred ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|.+..++.+...+..+ ..+.|+|..|+||||||+.+..-.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 45688888877777766654 589999999999999999999864
No 184
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.36 E-value=0.0043 Score=53.64 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=34.7
Q ss_pred cccchHHHHHHHHHhhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 135 HFESRKSTLKEILGSLS------NHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~------~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++|.+...+.+.+.+. +....++.++|..|+||||||+.+.....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46787777666655432 22456899999999999999999998753
No 185
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.35 E-value=0.0057 Score=50.86 Aligned_cols=48 Identities=15% Similarity=0.071 Sum_probs=34.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCceEEEEEcCCCCChHhh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGN----NLFEKVISAQVSQTPQIKKI 202 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i 202 (204)
-.++.|+|..|+|||||+.++.-..... ..-..++|+.-...++...+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl 229 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL 229 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH
Confidence 4699999999999999999876432211 12345888887777665443
No 186
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.002 Score=47.16 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....|.|+|..|+|||||...+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998753
No 187
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.34 E-value=0.0032 Score=52.89 Aligned_cols=27 Identities=30% Similarity=0.187 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|.++|.+|+||||++..+.....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999886654
No 188
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.34 E-value=0.0021 Score=52.56 Aligned_cols=25 Identities=36% Similarity=0.647 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+.--
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999853
No 189
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.33 E-value=0.0015 Score=59.21 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=35.0
Q ss_pred ccccchHHHHHHHHHhhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSN-------------HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.++.|.+..++.|.+++.- ....-|.++|..|+||||||+.+.+..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4567877777777666531 234579999999999999999998754
No 190
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.0039 Score=45.47 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=27.0
Q ss_pred HHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 144 KEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 144 ~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..+.+ +.....--|.|+|..|+|||||.+.+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 44556678999999999999999999854
No 191
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.32 E-value=0.0031 Score=45.63 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=26.7
Q ss_pred HHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 144 KEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 144 ~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.++.+.+.. ...--|.|+|..|+|||||...+.+.
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344454544 56678899999999999999998743
No 192
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.31 E-value=0.0027 Score=46.31 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
..+.+|+|..|+|||||+..|+-
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34889999999999999999975
No 193
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.30 E-value=0.0051 Score=50.21 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=33.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI 199 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 199 (204)
.-.++.|+|.+|+|||||+.++....... =..++|++...+++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDP 103 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCH
Confidence 35689999999999999999998654322 134788888776654
No 194
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0057 Score=50.81 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=37.0
Q ss_pred ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
.++.|.+..++.|.+.+. . ...+=|-++|++|.|||+||+.|.+....
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 557788888777766542 1 23567889999999999999999987653
No 195
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.28 E-value=0.0024 Score=50.53 Aligned_cols=39 Identities=28% Similarity=0.152 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQV 193 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 193 (204)
.-.+++|+|..|+|||||++.+......... ..++|++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeC
Confidence 3468999999999999999999877543210 13556654
No 196
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.28 E-value=0.0024 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+.--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 4568999999999999999999853
No 197
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.27 E-value=0.0043 Score=51.92 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=24.8
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 151 SNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 151 ~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....-.+|+|+|..|+|||||.+.+....
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34566799999999999999999998764
No 198
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.26 E-value=0.0025 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+.--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4568999999999999999999853
No 199
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.25 E-value=0.0025 Score=53.21 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....+|.|+|+.|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999998653
No 200
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.25 E-value=0.0025 Score=52.48 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.|..-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 3468999999999999999999853
No 201
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.25 E-value=0.0021 Score=51.37 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 046665 158 IGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 158 I~IvG~gGiGKTTLa~~v~~~ 178 (204)
|+|+|..|+|||||.+.++..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 499999999999999998753
No 202
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.24 E-value=0.004 Score=53.30 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|.|+|.+|+|||||+..+-....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999986543
No 203
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.23 E-value=0.0026 Score=52.51 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.|.--
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 4468999999999999999999853
No 204
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.23 E-value=0.0025 Score=52.19 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...++|+|..|+|||||++.+..-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998753
No 205
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.22 E-value=0.0036 Score=51.23 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..-.+|+|+|..|+|||||.+.+..-
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34459999999999999999998764
No 206
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.22 E-value=0.0027 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4568999999999999999999853
No 207
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.22 E-value=0.0042 Score=45.23 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
....-|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 35567899999999999999999865
No 208
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.21 E-value=0.0041 Score=52.35 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHHhhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSN--------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~--------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..++|.+..++.|...+.. ...+-|-++|+.|+||||||+.+.....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4578888877777655521 1345688999999999999999998764
No 209
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.21 E-value=0.0029 Score=51.64 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..-.+++|+|..|+|||||.+.+.+...
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567999999999999999999999754
No 210
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.20 E-value=0.0044 Score=45.92 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=23.8
Q ss_pred HHHhh-cCCCccEEEEEcCCCCcHHHHHHHHHH
Q 046665 146 ILGSL-SNHNFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 146 l~~~L-~~~~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
+++.+ ......-|.++|.+|+|||||.+.+.+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 44444 233344689999999999999999875
No 211
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.19 E-value=0.003 Score=52.11 Aligned_cols=27 Identities=19% Similarity=0.007 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....+|+|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999999754
No 212
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.19 E-value=0.0021 Score=54.01 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...+|.|+|.+|+||||++..+-...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999887754
No 213
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.19 E-value=0.0028 Score=46.42 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
--|.|+|.+|+|||||+..+.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999998877653
No 214
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.18 E-value=0.0029 Score=45.44 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||.+.+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998764
No 215
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0076 Score=50.91 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.++.|.+..++.|.+.+. . ...+-|-++|+.|.|||+||+.|.+...
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 457788888888776542 1 2467788999999999999999998765
No 216
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.17 E-value=0.0071 Score=49.49 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=32.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI 199 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 199 (204)
-.++.|+|..|+|||||+.++........ ..++|+.....++.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~ 103 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDP 103 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccch
Confidence 46999999999999999999997754221 24678877766653
No 217
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.16 E-value=0.0022 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+.--
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 4468999999999999999999853
No 218
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.15 E-value=0.0031 Score=45.71 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||.+.+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999999753
No 219
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.14 E-value=0.007 Score=49.51 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=33.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI 199 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 199 (204)
.-.++-|.|.+|+||||||.++........ ..++|++....++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~ 105 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDP 105 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccH
Confidence 346899999999999999999887644221 35889988777654
No 220
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.14 E-value=0.0019 Score=52.86 Aligned_cols=25 Identities=36% Similarity=0.596 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+.--
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999853
No 221
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.14 E-value=0.0031 Score=46.25 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|.+|+|||||++.+.++.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3468899999999999999888753
No 222
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.12 E-value=0.0031 Score=46.40 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..-|.++|.+|+|||||.+.+.++
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 447899999999999999999874
No 223
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.10 E-value=0.0035 Score=51.59 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..-.+++|+|..|+|||||++.+..-
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45678999999999999999999864
No 224
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.09 E-value=0.0018 Score=48.23 Aligned_cols=26 Identities=15% Similarity=0.182 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.....|+|+|..|+|||||.+.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999988753
No 225
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.09 E-value=0.0034 Score=45.38 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||.+.+.++.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3468899999999999999998754
No 226
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.08 E-value=0.0037 Score=45.75 Aligned_cols=25 Identities=16% Similarity=0.419 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+...|.|+|..|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999865
No 227
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.08 E-value=0.0043 Score=46.41 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....|.|+|..|+|||||+..+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998764
No 228
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.08 E-value=0.0045 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 566999999999999999999997
No 229
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.08 E-value=0.0088 Score=51.15 Aligned_cols=48 Identities=29% Similarity=0.378 Sum_probs=34.0
Q ss_pred CccccchHHHHHHHHHh---hcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGS---LSNH---------NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~---L~~~---------~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
-.++.|.+..+..+.+. +.+. -.+-+.|+|..|+||||||+.|.+...
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678888766555543 3221 123389999999999999999998654
No 230
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0039 Score=45.65 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||.+.+.++.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3468899999999999999998764
No 231
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.07 E-value=0.007 Score=45.70 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=28.9
Q ss_pred HHHHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 142 TLKEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 142 ~~~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
-...+..++.+ ..-+.+-|+|++|.||||+|..+.+...
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35555666543 2235799999999999999999988754
No 232
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.07 E-value=0.0034 Score=45.01 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
--|.|+|..|+|||||.+.+.++.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998653
No 233
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.07 E-value=0.0029 Score=46.17 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....|.|+|..|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578999999999999999998764
No 234
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.07 E-value=0.0029 Score=51.88 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999864
No 235
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.07 E-value=0.0035 Score=45.93 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||.+.+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
No 236
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.07 E-value=0.0035 Score=46.28 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..--|.|+|..|+|||||...+.++.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34568999999999999999998654
No 237
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.06 E-value=0.0035 Score=45.16 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
--|.|+|..|+|||||.+.+.++.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998763
No 238
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.05 E-value=0.0036 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||++.+.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998754
No 239
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0033 Score=53.25 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4568999999999999999999874
No 240
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0038 Score=45.97 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..--|.|+|..|+|||||++.+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999875
No 241
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.01 E-value=0.003 Score=50.38 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..+|+++|.+|+||||++..+.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999886654
No 242
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.01 E-value=0.0038 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|..|+|||||.+.|..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 456899999999999999999985
No 243
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.011 Score=49.42 Aligned_cols=48 Identities=31% Similarity=0.443 Sum_probs=37.1
Q ss_pred CccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 133 FIHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 133 ~~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
-.++.|.+..++.|.+.+. . ...+=|-++|+.|.|||+||+.|.+...
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 3557788887777766542 2 2357799999999999999999998765
No 244
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.00 E-value=0.0035 Score=46.25 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999987763
No 245
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.99 E-value=0.0047 Score=50.13 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
....+++|+|..|+|||||.+.+..-
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999999854
No 246
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0038 Score=45.84 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||.+.+.++.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 247
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.99 E-value=0.0031 Score=46.70 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
..--|.|+|.+|+|||||.+.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999984
No 248
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.97 E-value=0.005 Score=50.17 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+..+|+|+|..|+|||||.+.+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999864
No 249
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.97 E-value=0.004 Score=46.53 Aligned_cols=25 Identities=32% Similarity=0.232 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||++.+.++.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998753
No 250
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.96 E-value=0.005 Score=46.87 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=27.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
-.++.|.|.+|+|||||+.++....... =..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 4689999999999999988776543211 12466766544
No 251
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.95 E-value=0.0043 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||.+.+.++.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4468999999999999999999754
No 252
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.94 E-value=0.0042 Score=50.42 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...+|.|+|+.|+|||||+..+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
No 253
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.94 E-value=0.0046 Score=45.73 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..--|.|+|..|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34568999999999999999998754
No 254
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.93 E-value=0.0044 Score=45.33 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
--|.|+|..|+|||||.+.+.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998753
No 255
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.93 E-value=0.0042 Score=53.65 Aligned_cols=25 Identities=48% Similarity=0.703 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
-.+++|+|..|+|||||++.++.-.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999753
No 256
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.92 E-value=0.0044 Score=45.44 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||.+.+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998764
No 257
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.92 E-value=0.0043 Score=46.21 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.--|.|+|..|+|||||++.+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998865
No 258
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.91 E-value=0.0045 Score=45.19 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||.+.+.++.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998764
No 259
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.91 E-value=0.0038 Score=52.29 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 046665 158 IGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 158 I~IvG~gGiGKTTLa~~v~~~ 178 (204)
++|+|..|+|||||.+.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999864
No 260
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.91 E-value=0.0068 Score=48.94 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-+++-|+|++|+||||||.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356789999999999999999876
No 261
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.90 E-value=0.005 Score=45.31 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=22.7
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHH
Q 046665 150 LSNHNFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 150 L~~~~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
+.....--|.|+|.+|+|||||.+.+.+
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred hccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 3344556699999999999999999864
No 262
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.90 E-value=0.0046 Score=45.28 Aligned_cols=24 Identities=21% Similarity=0.312 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
--|.|+|..|+|||||.+.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358899999999999999998753
No 263
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.89 E-value=0.005 Score=49.99 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 152 NHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.....+|+|+|.+|+|||||+..+...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 356789999999999999999998754
No 264
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.87 E-value=0.0048 Score=45.07 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||.+.+.++.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998653
No 265
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.0049 Score=44.98 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
--|.|+|..|+|||||.+.+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998764
No 266
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.86 E-value=0.0043 Score=45.73 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||.+.+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4468899999999999999998653
No 267
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.86 E-value=0.0047 Score=53.36 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+.--
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999863
No 268
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.84 E-value=0.0053 Score=49.01 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+++|.+.+. -.+++++|..|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 345555553 3589999999999999999998 53
No 269
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.84 E-value=0.0043 Score=45.92 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.--|.|+|..|+|||||.+.+.++
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 446889999999999999999754
No 270
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.84 E-value=0.0049 Score=45.47 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..--|.|+|..|+|||||.+.+.++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4567899999999999999999865
No 271
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.83 E-value=0.0072 Score=50.64 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
...+|.++|.+|+||||++..+......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999877653
No 272
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.83 E-value=0.0036 Score=50.67 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
-.+++|+|..|+|||||++.+..-.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998753
No 273
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.82 E-value=0.013 Score=48.47 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=36.7
Q ss_pred HHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccC-CCCceEEEEEcCCCC
Q 046665 144 KEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGN-NLFEKVISAQVSQTP 197 (204)
Q Consensus 144 ~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~-~~F~~~~wv~vs~~~ 197 (204)
-++++.+.. ..-..++|+|..|+|||||++.+-+....+ ..+.|+ .+-+.+..
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~ 216 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERP 216 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCCh
Confidence 455666654 456799999999999999999998764322 235544 57676554
No 274
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.81 E-value=0.0054 Score=51.59 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..-.+++|+|..|+|||||++.+.+...
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4567999999999999999999998754
No 275
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.80 E-value=0.0038 Score=54.05 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.-.+|.|+|+.|+|||||++.+.....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 457899999999999999999998754
No 276
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.80 E-value=0.0049 Score=47.09 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...-|+|+|..|+|||||.+.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678999999999999999998753
No 277
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.80 E-value=0.0055 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.+++|+|..|+|||||.+.+.....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 5899999999999999999986543
No 278
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.79 E-value=0.0047 Score=44.89 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...--|.|+|..|+|||||.+.+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999998654
No 279
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.78 E-value=0.021 Score=51.26 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=36.5
Q ss_pred ccccchHHHHHHHHHhhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|.+..++.+...+.. .....+-++|..|+|||+||+.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578998888887777642 123379999999999999999999875
No 280
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.78 E-value=0.0049 Score=53.21 Aligned_cols=25 Identities=44% Similarity=0.801 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4469999999999999999999864
No 281
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.78 E-value=0.0044 Score=53.53 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-.+++|+|..|+|||||++.+..-
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999964
No 282
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0053 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-|.|+|..|+|||||...+.++.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 283
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0054 Score=44.93 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
--|.|+|..|+|||||.+.+.+..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 284
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.77 E-value=0.0053 Score=53.79 Aligned_cols=24 Identities=50% Similarity=0.732 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-.+++|+|..|+|||||++.+..-
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999974
No 285
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.75 E-value=0.0049 Score=46.21 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.--|.|+|..|+|||||.+.+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 286
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.73 E-value=0.0048 Score=44.78 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
--|.|+|..|+|||||.+.+.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 287
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.71 E-value=0.021 Score=45.66 Aligned_cols=63 Identities=13% Similarity=0.006 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc-cC-CCCceEEEEEcCC-CCChHhh
Q 046665 139 RKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK-GN-NLFEKVISAQVSQ-TPQIKKI 202 (204)
Q Consensus 139 ~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~-~~-~~F~~~~wv~vs~-~~~~~~i 202 (204)
.+...+.|.+.+.++.....-++|+.|.||||+|+.+-+... .. .|.+ ..++..+. ...++.|
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i 67 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI 67 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH
Confidence 344556677777766677889999999999999999977522 11 2334 35555443 4544433
No 288
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.71 E-value=0.006 Score=51.91 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.+++|+|..|+|||||.+.+..-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 89999999999999999999864
No 289
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.71 E-value=0.014 Score=46.72 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=31.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
.-.++-|.|.+|+||||||.++..+...+. ..++|++.-.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~ 106 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM 106 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC
Confidence 346889999999999999999987655432 5688887653
No 290
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.70 E-value=0.006 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.--|.|+|..|+|||||++.+.+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456899999999999999999864
No 291
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.70 E-value=0.0061 Score=45.23 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568999999999999999998653
No 292
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.70 E-value=0.006 Score=45.12 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
--|.|+|..|+|||||.+.+.++.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998753
No 293
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.0059 Score=53.48 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.+++|+|..|+|||||++.+.--
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 57999999999999999999864
No 294
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.66 E-value=0.0064 Score=45.61 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
--|.|+|.+|+|||||.+.+.++.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 458899999999999999998753
No 295
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.64 E-value=0.0064 Score=44.52 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...-|.|+|..|+|||||...+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999865
No 296
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.63 E-value=0.015 Score=47.67 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=33.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI 199 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 199 (204)
-.++-|.|.+|+||||||.++....... =..++|++...+++.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDP 116 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhH
Confidence 4588889999999999999887764322 135889988877654
No 297
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.0065 Score=53.25 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4569999999999999999999864
No 298
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.61 E-value=0.0041 Score=48.35 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....|.|.|.-|+||||+++.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998754
No 299
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.60 E-value=0.007 Score=48.23 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=25.7
Q ss_pred HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
++++..++. -.+++|+|..|+|||||.+.+...
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhccc
Confidence 344555553 358999999999999999999864
No 300
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.58 E-value=0.007 Score=44.41 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
--|.|+|..|+|||||.+.+.++.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998653
No 301
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.56 E-value=0.0053 Score=51.33 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 046665 158 IGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 158 I~IvG~gGiGKTTLa~~v~~~~ 179 (204)
|+|+|..|+|||||++.++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999998653
No 302
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.55 E-value=0.0074 Score=45.67 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...-|.|+|..|+|||||+..+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999865
No 303
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.55 E-value=0.0068 Score=53.13 Aligned_cols=25 Identities=44% Similarity=0.622 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+.--
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3468999999999999999999864
No 304
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.55 E-value=0.015 Score=44.68 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=28.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEE
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISA 191 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv 191 (204)
...|.|.|..|+||||+++.+.+..... .+.+.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 4689999999999999999999887643 45644443
No 305
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.54 E-value=0.0044 Score=45.32 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||.+.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998765
No 306
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.52 E-value=0.0092 Score=48.66 Aligned_cols=31 Identities=35% Similarity=0.424 Sum_probs=24.7
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 150 LSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 150 L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+.+...+++.+.|.||+||||+|-.+-....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3345678999999999999999988875543
No 307
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.50 E-value=0.0073 Score=52.60 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 308
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0082 Score=45.26 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.--|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999874
No 309
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.49 E-value=0.0072 Score=52.63 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4568999999999999999999864
No 310
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.49 E-value=0.02 Score=51.35 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHHhhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 134 IHFESRKSTLKEILGSLSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..++|.+..++.+...+.. .....+-++|..|+|||+||+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3467888887777776531 123478999999999999999999876
No 311
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.49 E-value=0.012 Score=44.18 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...+|+|+||.|+||+|.|..+-+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45699999999999999999887743
No 312
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.48 E-value=0.011 Score=50.90 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....+|-++|+.|+||||+|+.+.....
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999976653
No 313
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.47 E-value=0.0066 Score=45.35 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.--|.|+|..|+|||||.+.+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998864
No 314
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.47 E-value=0.0075 Score=46.64 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...-|+|+|..|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 34679999999999999999998653
No 315
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.47 E-value=0.0099 Score=42.27 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
..+..|+|..|.|||||...++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999874
No 316
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.46 E-value=0.023 Score=45.79 Aligned_cols=45 Identities=4% Similarity=-0.192 Sum_probs=33.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIK 200 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 200 (204)
.++-|.|..|+|||||+-++.....-+..=..++||+--.+++..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ 73 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA 73 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH
Confidence 378999999999999988887664321112468999888877643
No 317
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.45 E-value=0.0038 Score=50.09 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-.+++|+|..|+|||||.+.+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 358999999999999999999753
No 318
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.44 E-value=0.019 Score=49.23 Aligned_cols=28 Identities=7% Similarity=-0.180 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
+..+|-+.|+.|+||||+|+.+......
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 5578999999999999999999998763
No 319
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.38 E-value=0.011 Score=50.17 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....+|.++|+.|+||||+++.+.+...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999987654
No 320
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.36 E-value=0.012 Score=44.95 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=25.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
.....|.|.|..|+||||+++.+.+....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35678999999999999999999987654
No 321
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.35 E-value=0.0095 Score=45.12 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-|.|+|-+|+|||+|+..+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3678999999999999988764
No 322
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.0095 Score=44.82 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.--|.|+|..|+|||||...+.+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4468999999999999999998753
No 323
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.29 E-value=0.003 Score=46.84 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=22.7
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 150 LSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 150 L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+.+.+.--|.|+|..|+|||||...+.++
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 33445556899999999999999887754
No 324
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.29 E-value=0.011 Score=53.70 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=35.4
Q ss_pred cccchHHHHHHHHHhhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 135 HFESRKSTLKEILGSLSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.++|.+..+..+...+.. .....+-++|..|+|||+||+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 468888887777776532 123588999999999999999999875
No 325
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.28 E-value=0.012 Score=48.38 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=22.4
Q ss_pred CCccEEEEEc-CCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVYG-MGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~IvG-~gGiGKTTLa~~v~~~~ 179 (204)
.+.++|+|+| .||+||||+|-.+-...
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~L 168 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAH 168 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHH
Confidence 3578999995 99999999998877653
No 326
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.28 E-value=0.0092 Score=45.69 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
-..|.|.|+.|+||||+++.+.+....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987653
No 327
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.28 E-value=0.0071 Score=52.79 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999853
No 328
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.26 E-value=0.024 Score=47.49 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHhhcC-----------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 137 ESRKSTLKEILGSLSN-----------HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 137 ~g~~~~~~~l~~~L~~-----------~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.|.++.++.|...+.+ +..--|+|+|..|+|||||.+.+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 3666667777666531 123579999999999999999998754
No 329
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.21 E-value=0.0076 Score=43.88 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
...--|.|+|..|+|||||...+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 4455799999999999999999864
No 330
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.20 E-value=0.016 Score=52.31 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=33.0
Q ss_pred cccchHHHHHHHHHhh----cC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 135 HFESRKSTLKEILGSL----SN---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 135 ~~~g~~~~~~~l~~~L----~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
++.|.+..++.|.+++ .. ..++-|-++|+.|.|||+||+.|.+...
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567666555555443 22 1356799999999999999999998654
No 331
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.19 E-value=0.01 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=20.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEV 175 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v 175 (204)
.-.+++|+|..|+|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4579999999999999999995
No 332
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.19 E-value=0.0083 Score=52.43 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4579999999999999999999853
No 333
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.17 E-value=0.011 Score=48.55 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+..+|+|+|..|+|||||.+.+.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 46779999999999999999998653
No 334
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.17 E-value=0.0088 Score=44.78 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+...|.|+|..|+|||||...+.+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998764
No 335
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.17 E-value=0.031 Score=45.03 Aligned_cols=43 Identities=9% Similarity=0.214 Sum_probs=34.0
Q ss_pred chHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 138 SRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 138 g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..+.....+.+.+..+. ...+-++|..|+||||+|+.+-+...
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 34566777777777665 45799999999999999999987643
No 336
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.16 E-value=0.011 Score=45.56 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.--|+++|..|+|||||...+...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999865
No 337
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.15 E-value=0.0082 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-|+|+|..|+|||||++.++..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4699999999999999998764
No 338
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.14 E-value=0.0045 Score=45.66 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=4.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
--|.|+|..|+|||||...+.++
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999988766
No 339
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.14 E-value=0.0064 Score=45.63 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~ 176 (204)
--|.|+|..|+|||||.+.+.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999944
No 340
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.13 E-value=0.01 Score=51.85 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-|-++|..|+|||+||+.+.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4889999999999999999875
No 341
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.09 E-value=0.012 Score=45.54 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=23.0
Q ss_pred CCCccEEEEE-cCCCCcHHHHHHHHHHHhc
Q 046665 152 NHNFNMIGVY-GMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 152 ~~~~~vI~Iv-G~gGiGKTTLa~~v~~~~~ 180 (204)
....++|+|+ |-||+||||+|-.+-.-..
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la 53 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS 53 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH
Confidence 3467899997 6888999999999887665
No 342
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.08 E-value=0.017 Score=50.30 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|.|.|+.|+||||+|+.+-+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999987654
No 343
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.08 E-value=0.01 Score=50.85 Aligned_cols=25 Identities=20% Similarity=0.001 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...|+|+|..|+|||||++.+..-.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3459999999999999999998643
No 344
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.06 E-value=0.028 Score=44.08 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=27.5
Q ss_pred HHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 143 LKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 143 ~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+++.+.|.. ....-|+|+|..|+|||||...+....
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 4455555532 235589999999999999999998653
No 345
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.03 E-value=0.013 Score=44.00 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-+.|.|.|..|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999764
No 346
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.02 E-value=0.0072 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4579999999999999999998753
No 347
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.99 E-value=0.037 Score=45.83 Aligned_cols=53 Identities=17% Similarity=0.146 Sum_probs=38.5
Q ss_pred HHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccC-CCCceEEEEEcCCCC
Q 046665 144 KEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGN-NLFEKVISAQVSQTP 197 (204)
Q Consensus 144 ~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~-~~F~~~~wv~vs~~~ 197 (204)
-++++.|.. ..-+-++|+|..|+|||||++.|.+....+ ..+.| +++-+.+.+
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~ 217 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERP 217 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCH
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCc
Confidence 466777765 456789999999999999999998875432 23554 567777654
No 348
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.97 E-value=0.016 Score=48.09 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-..++|+|..|+|||||.+.+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999984
No 349
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.96 E-value=0.025 Score=43.92 Aligned_cols=26 Identities=35% Similarity=0.564 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..-.|+|+|..|+|||||...+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998754
No 350
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.96 E-value=0.033 Score=47.17 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=30.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP 197 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~ 197 (204)
-+.++|+|..|+|||||++.+.++.... +-+.++++-+.+..
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGert 192 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERT 192 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCc
Confidence 3468999999999999999998875532 12455677666543
No 351
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.95 E-value=0.018 Score=50.52 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
...+|.+.|+.|+||||+|+.+-+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998865
No 352
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.93 E-value=0.013 Score=46.23 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=21.8
Q ss_pred CccEEEEEc---CCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYG---MGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG---~gGiGKTTLa~~v~~~~~ 180 (204)
+.++|+|++ .||+||||+|-.+-.-..
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la 62 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTD 62 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHH
Confidence 456788886 999999999998886543
No 353
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.92 E-value=0.017 Score=46.99 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+...|+++|..|+|||||.+.+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999764
No 354
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.89 E-value=0.0099 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999753
No 355
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.89 E-value=0.038 Score=43.31 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCC--CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 142 TLKEILGSLSNH--NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 142 ~~~~l~~~L~~~--~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-..-+..||... ..+-|-++|++|.|||+||..+.+.
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 445577777653 3567999999999999999999875
No 356
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.88 E-value=0.018 Score=46.67 Aligned_cols=31 Identities=35% Similarity=0.381 Sum_probs=24.4
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 150 LSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 150 L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
+.+...+++-+.|.||+||||+|-.+-....
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la 41 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA 41 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 3445577888889999999999998876543
No 357
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.85 E-value=0.029 Score=45.61 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=20.4
Q ss_pred CCCccEEEE-EcCCCCcHHHHHHHHHHHh
Q 046665 152 NHNFNMIGV-YGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 152 ~~~~~vI~I-vG~gGiGKTTLa~~v~~~~ 179 (204)
+...++|.| .|.||+||||+|-.+-...
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~l 50 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYL 50 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHH
Confidence 444555554 4999999999998886553
No 358
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.85 E-value=0.019 Score=47.04 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.++.+|+|..|.|||||...|+-
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHH
Confidence 34999999999999999999995
No 359
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.82 E-value=0.016 Score=52.47 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=35.9
Q ss_pred ccccchHHHHHHHHHhhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSN-------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..+.|.+..++.|...+.- .....+.++|..|+||||||+.+.+...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 4567777777777776531 1245688999999999999999998764
No 360
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.79 E-value=0.016 Score=45.21 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..-.|.++|..|+|||||...+.+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998754
No 361
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.79 E-value=0.017 Score=49.65 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.-.+++|+|..|+|||||++.+.....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999987644
No 362
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.77 E-value=0.017 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
-.+++|+|..|+|||||++.+..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999985
No 363
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.74 E-value=0.016 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEV 175 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v 175 (204)
...-|-|+|.||+||||+++++
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4567889999999999999985
No 364
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.70 E-value=0.074 Score=45.07 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=38.8
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665 145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP 197 (204)
Q Consensus 145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~ 197 (204)
+.++.|.. ..-+-++|+|..|+|||||++.+-++... .+-++++++-+.+..
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~ 194 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERT 194 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcc
Confidence 34555544 35678999999999999999999887532 235778888888765
No 365
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.68 E-value=0.022 Score=46.08 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
+.++..|+|..|.|||||...|+-
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 357889999999999999999864
No 366
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.68 E-value=0.017 Score=46.42 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.++-.-|.||+||||+|-.+-...
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~l 38 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWM 38 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHH
Confidence 344455999999999998887553
No 367
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.64 E-value=0.026 Score=43.01 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...+|+|.|+.|+||||+++.+-..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~ 37 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEE 37 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 3569999999999999999998764
No 368
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.61 E-value=0.021 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..+.+|+|..|.|||||...|+--
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999999999853
No 369
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.61 E-value=0.035 Score=43.26 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=26.5
Q ss_pred HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+.|.++|.+.- ..+.++|..|+|||||.+.+....
T Consensus 88 i~~L~~~l~~~~-~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 88 KVLLKKLSFDRL-ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp HHHHHHHCCCTT-CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh-hheEEeCCCCCCHHHHHHHHhccc
Confidence 345555554211 578999999999999999998643
No 370
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.56 E-value=0.024 Score=42.38 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
..+..|+|..|.||||+...|+-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 46889999999999999999874
No 371
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.56 E-value=0.014 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.+..|+|+|..|+|||||.+.+..-
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCC
Confidence 4567999999999999999999853
No 372
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.55 E-value=0.018 Score=46.18 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
.++.+|+|..|.|||||...++
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHH
Confidence 3489999999999999999999
No 373
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=94.54 E-value=0.022 Score=47.06 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=22.4
Q ss_pred CCccEEEEE-cCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVY-GMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~Iv-G~gGiGKTTLa~~v~~~~ 179 (204)
...++|+|+ |-||+||||+|-.+-.-.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~L 133 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAM 133 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 357899999 889999999998887654
No 374
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.52 E-value=0.057 Score=46.66 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...+|.+.|+.|+||||+|+.+.....
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999987643
No 375
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.50 E-value=0.022 Score=44.09 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=21.5
Q ss_pred CccEEEEE-cCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVY-GMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~Iv-G~gGiGKTTLa~~v~~~~~ 180 (204)
..++|+|+ |.||+||||+|-.+-.-..
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la 44 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYA 44 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 45788887 6889999999998876543
No 376
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=94.47 E-value=0.014 Score=48.68 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...|+|+|..|+|||||.+.+...
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 467999999999999999999865
No 377
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.46 E-value=0.026 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
.++..|+|..|.|||||...|+
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3478899999999999999987
No 378
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.45 E-value=0.048 Score=45.61 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHhhcC-------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 137 ESRKSTLKEILGSLSN-------HNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 137 ~g~~~~~~~l~~~L~~-------~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.|.++.++.+.+.+.+ +...-|+|+|..|+|||||...+....
T Consensus 150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4677778888877742 244678999999999999999998754
No 379
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.44 E-value=0.014 Score=53.84 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||.+.+..-
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999853
No 380
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.43 E-value=0.0035 Score=48.05 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+++|+|+.|+|||||.+.|.--.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 55789999999999999998653
No 381
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.40 E-value=0.065 Score=45.60 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=38.4
Q ss_pred HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665 146 ILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP 197 (204)
Q Consensus 146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~ 197 (204)
.++.|.. ..-+-++|.|-.|+|||+|++.+-++... .+-++++++-+.+..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~ 206 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERT 206 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCS
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCc
Confidence 3444443 35578999999999999999999887432 245788999888765
No 382
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.29 E-value=0.02 Score=42.61 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.--|.|+|..|+|||||...+.+.
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999998854
No 383
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.23 E-value=0.011 Score=49.04 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.++++|+|..|.|||||.+.|+--
T Consensus 60 ~G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 60 GGFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp SSEEEEEESHHHHHHHHTHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 349999999999999999999643
No 384
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.21 E-value=0.035 Score=42.11 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=26.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
-.++-|.|.+|+||||||.++..+...+ .-..+++++...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~ 69 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC
Confidence 4688999999999999998865432111 112356666543
No 385
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.08 E-value=0.033 Score=44.12 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
....|+|+|..|+|||||...+...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 4668999999999999999999764
No 386
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.07 E-value=0.072 Score=46.00 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=38.4
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCC
Q 046665 145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQ 198 (204)
Q Consensus 145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 198 (204)
++++.|.. ..-+-++|.|..|+|||+|++.+-+... -+.++++-+.+..+
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~ 266 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGN 266 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSS
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHH
Confidence 34555554 3567899999999999999999977532 46888888887764
No 387
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.03 E-value=0.03 Score=44.49 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..--|.|+|..|+|||||...+.++.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~ 179 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA 179 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC
Confidence 34568899999999999999988753
No 388
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.97 E-value=0.06 Score=42.43 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..-.|+++|..|+|||||...+....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34578999999999999999998653
No 389
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.94 E-value=0.038 Score=46.50 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=29.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
-.++.|.|.+|+|||||+.++..+...... ..++|++...
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~ 242 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEM 242 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCC
Confidence 468999999999999999999887543211 2477776543
No 390
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.86 E-value=0.034 Score=49.96 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
-.+++|+|+.|.|||||.+.+.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 46899999999999999999875
No 391
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.85 E-value=0.019 Score=50.84 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
-.+++|+|..|+|||||++.+.
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 4689999999999999997653
No 392
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.84 E-value=0.026 Score=45.43 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-.|.|+|..|+|||||+..+.+.
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~ 188 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLG 188 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSS
T ss_pred ceEEEECCCCccHHHHHHHHhCC
Confidence 36899999999999999988653
No 393
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.80 E-value=0.037 Score=46.60 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
....|+|+|..|+|||||...+...
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3578999999999999999998653
No 394
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=93.75 E-value=0.034 Score=46.05 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...|+|+|..|+|||||.+.+.+.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999865
No 395
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.74 E-value=0.075 Score=42.17 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=23.7
Q ss_pred CCCccEEEEEcC-CCCcHHHHHHHHHHHhc
Q 046665 152 NHNFNMIGVYGM-GGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 152 ~~~~~vI~IvG~-gGiGKTTLa~~v~~~~~ 180 (204)
+...++|.|+|. ||+||||+|-.+-.-..
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA 130 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVIA 130 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHHH
Confidence 456789999986 89999999988876543
No 396
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.71 E-value=0.051 Score=41.38 Aligned_cols=26 Identities=15% Similarity=-0.208 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.-.++-|+|..|+||||++..+.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35688899999999999887777664
No 397
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.68 E-value=0.039 Score=49.90 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-.+++|+|+.|.|||||.+.+.-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999999875
No 398
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.64 E-value=0.031 Score=49.42 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=17.1
Q ss_pred CccEEEEEcCCCCcHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLV 172 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa 172 (204)
.-.+++|+|..|+|||||+
T Consensus 43 ~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 43 RGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHh
Confidence 4568999999999999996
No 399
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=93.62 E-value=0.021 Score=47.21 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=14.7
Q ss_pred CCccEEEEE-cCCCCcHHHHHHHHHHHh
Q 046665 153 HNFNMIGVY-GMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 153 ~~~~vI~Iv-G~gGiGKTTLa~~v~~~~ 179 (204)
...++|+|+ |-||+||||++-.+-.-.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~L 136 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHAL 136 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHH
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHH
Confidence 467899999 899999999888876654
No 400
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.58 E-value=0.032 Score=52.99 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999863
No 401
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=93.54 E-value=0.038 Score=42.68 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.9
Q ss_pred cEEEEEcCC---------CCcHHHHHHHHHH
Q 046665 156 NMIGVYGMG---------GIGKTMLVKEVAG 177 (204)
Q Consensus 156 ~vI~IvG~g---------GiGKTTLa~~v~~ 177 (204)
--|.|+|.+ |+|||||.+.+.+
T Consensus 20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp EEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred eEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 458899999 9999999999987
No 402
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.50 E-value=0.055 Score=43.55 Aligned_cols=27 Identities=37% Similarity=0.384 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
...++-+-|.||+||||+|-.+--...
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA 44 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMS 44 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 345555669999999999988876544
No 403
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=93.49 E-value=0.036 Score=47.63 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
--|+++|.+|+|||||.+.+.+..
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998653
No 404
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.47 E-value=0.08 Score=41.38 Aligned_cols=29 Identities=17% Similarity=0.207 Sum_probs=23.3
Q ss_pred CCCccEEEEEcC-CCCcHHHHHHHHHHHhc
Q 046665 152 NHNFNMIGVYGM-GGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 152 ~~~~~vI~IvG~-gGiGKTTLa~~v~~~~~ 180 (204)
+...++|.|+|. ||+||||+|-.+-.-..
T Consensus 79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~lA 108 (271)
T 3bfv_A 79 DSAVQSIVITSEAPGAGKSTIAANLAVAYA 108 (271)
T ss_dssp TCCCCEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 456789999975 89999999988876543
No 405
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.45 E-value=0.054 Score=39.69 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-|.|.|..|+||||||..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46789999999999999988863
No 406
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=93.41 E-value=0.053 Score=44.18 Aligned_cols=28 Identities=32% Similarity=0.253 Sum_probs=20.1
Q ss_pred CCccEEE-EEcCCCCcHHHHHHHHHHHhc
Q 046665 153 HNFNMIG-VYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 153 ~~~~vI~-IvG~gGiGKTTLa~~v~~~~~ 180 (204)
++.++|. ..|.||+||||+|-.+--...
T Consensus 15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 15 STTHKWIFVGGKGGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp CSSCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3444454 459999999999988775544
No 407
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.36 E-value=0.12 Score=44.74 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=36.8
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665 145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT 196 (204)
Q Consensus 145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~ 196 (204)
++++.|.. ..-+-++|.|-.|+|||+|+..+-+... -+.++++-+.+.
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER 269 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGER 269 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEEC
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEeccc
Confidence 35566654 4567899999999999999999988643 467888877655
No 408
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=93.30 E-value=0.047 Score=46.98 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
..+.|+|+|.+|+|||||+..+.
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHH
Confidence 56889999999999999999984
No 409
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.09 E-value=0.06 Score=43.74 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.+..|+|+|..|+|||||...+...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999874
No 410
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.98 E-value=0.063 Score=46.66 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=26.7
Q ss_pred HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....+..+.. .+++.|.|.+|.||||++..+.....
T Consensus 194 Q~~Av~~~~~--~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 194 QASVLDQLAG--HRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp HHHHHHHHTT--CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3444444433 47888999999999999999987654
No 411
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.98 E-value=0.11 Score=43.65 Aligned_cols=40 Identities=15% Similarity=-0.022 Sum_probs=29.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
-.++-|.|.+|+||||||.++..+...... ..++|++.-.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE~ 239 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLEM 239 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECCC
Confidence 458899999999999999999877543211 2477776643
No 412
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.95 E-value=0.044 Score=52.08 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-.+++|+|..|+|||||++.+..-
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999753
No 413
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=92.91 E-value=0.016 Score=42.65 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.--|.|+|..|+|||||.+.+.+
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999988764
No 414
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.91 E-value=0.053 Score=51.69 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-..++|||..|+|||||++.+..-
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCcEEEEEecCCCcHHHHHHHhccc
Confidence 4578999999999999999999863
No 415
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.87 E-value=0.14 Score=41.90 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 137 ESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 137 ~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.|.+...+.|.+++. -..|.++|..|+|||||...+.+.
T Consensus 147 ~gi~~L~~~I~~~~~---~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 147 IGMAKVMEAINRYRE---GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp BTHHHHHHHHHHHHT---TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcc---cCcEEEEcCCCCchHHHHHHHHhh
Confidence 355556666655543 256899999999999999999987
No 416
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.87 E-value=0.057 Score=49.60 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEV 175 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v 175 (204)
.-.+++|+|+.|.|||||.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999998
No 417
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=92.87 E-value=0.1 Score=42.31 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 141 STLKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 141 ~~~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..+++|.+.|.. ....-|+|+|..|+|||||...+...
T Consensus 11 ~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 11 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp HHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCC
Confidence 345555555432 24568999999999999999998764
No 418
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.87 E-value=0.13 Score=43.28 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=30.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ 195 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 195 (204)
.-.++-|.|.+|+||||||-++..+...++ ..++|++.-.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm 235 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM 235 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC
Confidence 346899999999999999999988765431 3577776543
No 419
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=92.84 E-value=0.097 Score=44.05 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=28.7
Q ss_pred HHHHHHHHh--hcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 141 STLKEILGS--LSNHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 141 ~~~~~l~~~--L~~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+..+.++.. +.+..+.||+|+|..++||+||...++..
T Consensus 51 eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 51 TALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp HHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 344444432 23457899999999999999999999865
No 420
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=92.81 E-value=0.069 Score=45.95 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
....|+|+|..|+|||||+..+...
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 4678999999999999999999863
No 421
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=92.75 E-value=0.13 Score=44.43 Aligned_cols=48 Identities=19% Similarity=0.143 Sum_probs=36.2
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665 145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT 196 (204)
Q Consensus 145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~ 196 (204)
+.++.|.. ..-+-++|.|-.|+|||+|+..+-+... -+.++++-+.+.
T Consensus 210 rvID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER 258 (578)
T 3gqb_A 210 RILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGER 258 (578)
T ss_dssp HHHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEEC
T ss_pred hhhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccC----CCEEEEEEeccc
Confidence 34555543 3567899999999999999999988643 467788877655
No 422
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=92.66 E-value=0.15 Score=41.72 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=29.7
Q ss_pred chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
|.+..++.|.+++. -..|.++|..|+|||||.+.+.+..
T Consensus 146 gi~~L~~~l~~~~~---~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 146 GIAELADAIEYYRG---GKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp THHHHHHHHHHHHT---TSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred CHHHHHhhhhhhcc---cceEEEecCCCCChhHHHHHHHhhh
Confidence 55555566655442 2578999999999999999999873
No 423
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.66 E-value=0.047 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
.-.+++|+|+.|.|||||.+.+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHH
Confidence 35799999999999999999885
No 424
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.60 E-value=0.14 Score=40.41 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=23.4
Q ss_pred CCCccEEEEEc-CCCCcHHHHHHHHHHHhc
Q 046665 152 NHNFNMIGVYG-MGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 152 ~~~~~vI~IvG-~gGiGKTTLa~~v~~~~~ 180 (204)
+...++|.|+| .||+||||+|-.+-.-..
T Consensus 89 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA 118 (286)
T 3la6_A 89 QAQNNVLMMTGVSPSIGMTFVCANLAAVIS 118 (286)
T ss_dssp TTTCCEEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 45678999997 578999999988876544
No 425
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.57 E-value=0.082 Score=44.72 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 046665 157 MIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 157 vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
-|+|+|..|+|||||...+.+..
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998764
No 426
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.54 E-value=0.035 Score=52.95 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-..|+|||..|+|||||++.++.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 456899999999999999999986
No 427
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.53 E-value=0.11 Score=43.68 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=34.3
Q ss_pred HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccC--CCCceEEEEEcCCC
Q 046665 146 ILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGN--NLFEKVISAQVSQT 196 (204)
Q Consensus 146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~--~~F~~~~wv~vs~~ 196 (204)
.++.|.. ..-+-++|.|-.|+|||||+.+|.++.... ++=-.++++-+.+.
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR 194 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGIT 194 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEEC
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCC
Confidence 4555543 234567899999999999999999886642 11115677766654
No 428
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.43 E-value=0.093 Score=42.53 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=27.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEc
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQV 193 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 193 (204)
-.++-|.|.+|+||||||..+..+....+ ..++|++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSl 82 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSL 82 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC
Confidence 46888999999999999999987754321 34666654
No 429
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=92.41 E-value=0.042 Score=50.62 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEV 175 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v 175 (204)
-.+++|+|..|+|||||++.+
T Consensus 668 GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 668 GVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp SSEEEEECSTTSSHHHHHTTT
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 358999999999999999985
No 430
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.38 E-value=0.072 Score=49.45 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEV 175 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v 175 (204)
-.+++|+|+.|.|||||.+.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 479999999999999999998
No 431
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=92.30 E-value=0.062 Score=44.16 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
....|.|=|.-|+||||+++.+.+...
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345789999999999999999987654
No 432
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=92.29 E-value=0.078 Score=45.84 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....|+|+|..|+|||||.+.+....
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999999998753
No 433
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.22 E-value=0.061 Score=43.66 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+..|+++|..|+|||||...+.+.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEE
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcC
Confidence 346899999999999999998764
No 434
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.16 E-value=0.2 Score=45.32 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=34.7
Q ss_pred ccccchHHHHHHHHHhhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 134 IHFESRKSTLKEILGSLSN-------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 134 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..+.|.+..++.|.+.+.- ...+-|-++|+.|.|||.||+.+.+...
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 4567888777777665421 1244578999999999999999998654
No 435
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.11 E-value=0.15 Score=49.69 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=33.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP 197 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~ 197 (204)
-+++-|+|..|.|||+||+++....... =...++|++...+
T Consensus 1082 g~~~l~~G~~g~GKT~la~~~~~~~~~~--g~~~~fi~~~~~~ 1122 (1706)
T 3cmw_A 1082 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHAL 1122 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCC
T ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhc--CCceeEEEcccch
Confidence 4579999999999999999999876543 3468888887755
No 436
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=92.09 E-value=0.042 Score=49.86 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCcHHHHHHH-HH
Q 046665 155 FNMIGVYGMGGIGKTMLVKE-VA 176 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~-v~ 176 (204)
-.+++|+|..|+|||||++. ++
T Consensus 523 Geiv~I~G~nGSGKSTLl~~~L~ 545 (842)
T 2vf7_A 523 GVMTSVTGVSGSGKSTLVSQALV 545 (842)
T ss_dssp SSEEEEECCTTSSHHHHCCCCCH
T ss_pred CCEEEEEcCCCcCHHHHHHHHHH
Confidence 35899999999999999996 55
No 437
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=91.93 E-value=0.039 Score=50.62 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=18.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEV 175 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v 175 (204)
-.+++|+|..|+|||||++.+
T Consensus 650 Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 650 GTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SSEEECCBCTTSSHHHHHTTT
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 358999999999999999985
No 438
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.84 E-value=0.11 Score=42.68 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
..-+.|+|..|.|||||++.+.....
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999987654
No 439
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=91.73 E-value=0.097 Score=45.65 Aligned_cols=28 Identities=21% Similarity=0.498 Sum_probs=24.3
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 152 NHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+....+|+|+|..|+|||||...+....
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 4567899999999999999999998753
No 440
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.68 E-value=0.15 Score=37.95 Aligned_cols=34 Identities=18% Similarity=0.033 Sum_probs=23.1
Q ss_pred HHhhcCCCccEEEEEcCCCCcHH-HHHHHHHHHhc
Q 046665 147 LGSLSNHNFNMIGVYGMGGIGKT-MLVKEVAGQAK 180 (204)
Q Consensus 147 ~~~L~~~~~~vI~IvG~gGiGKT-TLa~~v~~~~~ 180 (204)
+.......-++.-|+|.-|+||| .|.+.++|...
T Consensus 12 ~~~~~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~ 46 (195)
T 1w4r_A 12 VPRGSKTRGQIQVILGPMFSGKSTELMRRVRRFQI 46 (195)
T ss_dssp -------CCEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCCceEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 33333345678999999999999 88888888654
No 441
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=91.66 E-value=0.12 Score=42.13 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
+.++..|+|..|.|||||.-.||-
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999984
No 442
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=91.62 E-value=0.11 Score=44.03 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
--|.|+|.+|+|||||...+....
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~ 346 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQ 346 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998754
No 443
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.58 E-value=0.12 Score=43.46 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
...++..|.|.+|.||||+.+...+
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 3678999999999999999988764
No 444
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.55 E-value=0.15 Score=43.17 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=36.2
Q ss_pred HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCC--CceEEEEEcCCCC
Q 046665 146 ILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNL--FEKVISAQVSQTP 197 (204)
Q Consensus 146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~--F~~~~wv~vs~~~ 197 (204)
.++.|.. ..-.-++|.|-.|+|||||+.+|.++...... =+.++++-+.+..
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~ 196 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITN 196 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECH
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCc
Confidence 4555543 34567888999999999999999998665321 1457777766543
No 445
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=91.54 E-value=0.082 Score=44.17 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
....|+|+|..|+|||||...+..+.
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhc
Confidence 34578999999999999999987654
No 446
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.53 E-value=0.2 Score=42.60 Aligned_cols=41 Identities=22% Similarity=0.051 Sum_probs=30.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT 196 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~ 196 (204)
-.++-|.|.+|+||||||.++..+...+.. ..++|++.-.+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~E~s 282 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAMLEES 282 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEESSSC
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEeccCC
Confidence 468899999999999999999877653311 24778776543
No 447
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=91.41 E-value=0.19 Score=42.39 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=29.9
Q ss_pred ccchHHHHHHHHHh--hcCCCccEEEEEcCCCCcHHHHHHHHHH
Q 046665 136 FESRKSTLKEILGS--LSNHNFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 136 ~~g~~~~~~~l~~~--L~~~~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
+.=.++.++.|+.. +.+..+.||+|+|.-+.|||+|...+..
T Consensus 46 l~ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 46 FELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp EEECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred EEECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHH
Confidence 33344444545432 2345789999999999999999998764
No 448
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.36 E-value=0.13 Score=41.24 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.-+.|.|..|+||||||..+...
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 56899999999999999999874
No 449
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=91.27 E-value=0.12 Score=45.88 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
....|+|+|..|+|||||+..+...
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~ 35 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYY 35 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999753
No 450
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.15 E-value=0.14 Score=38.81 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=17.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~ 176 (204)
+.+.|+|..|+||||+.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 688999999999998665554
No 451
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.07 E-value=0.14 Score=44.73 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
-+++.|.|.+|.||||++..+....
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4789999999999999988877654
No 452
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.95 E-value=0.2 Score=42.23 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=27.3
Q ss_pred HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665 146 ILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKG 181 (204)
Q Consensus 146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~ 181 (204)
.++.|.. ..-+-++|.|-.|+|||||+.+|.++...
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 4555543 34557889999999999999999987654
No 453
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=90.91 E-value=0.15 Score=42.18 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=22.7
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 152 NHNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+.....|+|+|..|+|||||...+...
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 345677999999999999999999874
No 454
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.66 E-value=0.41 Score=40.78 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=34.4
Q ss_pred HHHhhcC-CCccEEEEEcCCCCcHHHH-HHHHHHHhccCCCCc-eEEEEEcCCCC
Q 046665 146 ILGSLSN-HNFNMIGVYGMGGIGKTML-VKEVAGQAKGNNLFE-KVISAQVSQTP 197 (204)
Q Consensus 146 l~~~L~~-~~~~vI~IvG~gGiGKTTL-a~~v~~~~~~~~~F~-~~~wv~vs~~~ 197 (204)
.++.|.. ..-+-++|+|-.|+|||+| +..|.|... -+ .++++-+.+..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~ 202 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQ 202 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCH
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcc
Confidence 4555543 3456789999999999999 568888653 45 35777777654
No 455
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.52 E-value=0.42 Score=40.78 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=36.2
Q ss_pred HHHhhcC-CCccEEEEEcCCCCcHHHH-HHHHHHHhcc----CCCCc-eEEEEEcCCCC
Q 046665 146 ILGSLSN-HNFNMIGVYGMGGIGKTML-VKEVAGQAKG----NNLFE-KVISAQVSQTP 197 (204)
Q Consensus 146 l~~~L~~-~~~~vI~IvG~gGiGKTTL-a~~v~~~~~~----~~~F~-~~~wv~vs~~~ 197 (204)
.++.|.. ..-.-++|+|-.|+|||+| +..|.|.... .++-+ .++++-+.+..
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~ 210 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR 210 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCH
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCc
Confidence 4555543 3456789999999999999 5677776552 12344 47888887765
No 456
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.41 E-value=0.31 Score=48.23 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=34.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI 199 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 199 (204)
.-+++-|+|.+|+||||||.++..+..... ..++|++.-.+++.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~ 425 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDP 425 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHH
Confidence 356999999999999999999988765331 35888887776653
No 457
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.41 E-value=0.27 Score=47.86 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=34.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI 199 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 199 (204)
.-+++-|.|.+|+||||||.++..+.... =..++|++...+++.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~ 425 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDP 425 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHH
Confidence 35689999999999999999998765432 235888888777653
No 458
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.31 E-value=0.18 Score=51.15 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=34.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI 202 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 202 (204)
...+-.-+||.||+|||||++.+..-..-. +.-+.++++|++.+.
T Consensus 1607 ~p~G~~LLvGvgGsGkqSltrLaa~i~~~~-----~fqi~~~~~Y~~~~f 1651 (2695)
T 4akg_A 1607 QVQGHMMLIGASRTGKTILTRFVAWLNGLK-----IVQPKIHRHSNLSDF 1651 (2695)
T ss_dssp SSSEEEEEECTTTSCHHHHHHHHHHHTTCE-----EECCCCCTTCCHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHHhCCe-----eEEEEeeCCCCHHHH
Confidence 345567899999999999999998765432 445678888887653
No 459
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=90.30 E-value=0.12 Score=43.94 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 046665 158 IGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 158 I~IvG~gGiGKTTLa~~v~~~ 178 (204)
|+|+|..|+|||||...+.+.
T Consensus 236 V~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999988765
No 460
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=90.26 E-value=0.34 Score=40.67 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHhhcC-------CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 137 ESRKSTLKEILGSLSN-------HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 137 ~g~~~~~~~l~~~L~~-------~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
.|.++.++.+.+.+.. ....-|+++|.+|+|||||...+...
T Consensus 170 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence 4666667777766531 24567899999999999999999854
No 461
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.23 E-value=0.33 Score=42.66 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCccEEEEEcCCCCcHHH-HHHHHHHHhccCCCCceEEEEEcCCCCChH
Q 046665 142 TLKEILGSLSNHNFNMIGVYGMGGIGKTM-LVKEVAGQAKGNNLFEKVISAQVSQTPQIK 200 (204)
Q Consensus 142 ~~~~l~~~L~~~~~~vI~IvG~gGiGKTT-La~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 200 (204)
+.+-+...|...+ +--|.|++|.|||+ ++..|+.-.. + ...|.|+...+-.++
T Consensus 194 Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l~~-~---~~~ILv~a~TN~AvD 247 (646)
T 4b3f_X 194 QKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAVK-Q---GLKVLCCAPSNIAVD 247 (646)
T ss_dssp HHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHHHH-T---TCCEEEEESSHHHHH
T ss_pred HHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHHHh-C---CCeEEEEcCchHHHH
Confidence 3344444454333 55688999999985 4555544333 1 235666654443333
No 462
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.20 E-value=0.41 Score=40.83 Aligned_cols=48 Identities=17% Similarity=0.123 Sum_probs=34.2
Q ss_pred HHHhhcC-CCccEEEEEcCCCCcHHHH-HHHHHHHhccCCCCc-eEEEEEcCCCC
Q 046665 146 ILGSLSN-HNFNMIGVYGMGGIGKTML-VKEVAGQAKGNNLFE-KVISAQVSQTP 197 (204)
Q Consensus 146 l~~~L~~-~~~~vI~IvG~gGiGKTTL-a~~v~~~~~~~~~F~-~~~wv~vs~~~ 197 (204)
.++.|.. ..-+-++|+|-.|+|||+| +..|.|... -+ .++++-+.+..
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~ 215 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKK 215 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCH
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCc
Confidence 4444443 3456799999999999999 568887642 45 36778777665
No 463
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=90.07 E-value=0.21 Score=45.46 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...+-|+|+|..|+|||||+..+...
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHh
Confidence 45778999999999999999998765
No 464
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=89.89 E-value=0.15 Score=41.26 Aligned_cols=26 Identities=31% Similarity=0.157 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHhc
Q 046665 155 FNMIGVYGMGGIGKTMLV-KEVAGQAK 180 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa-~~v~~~~~ 180 (204)
...|.|=|.=|+||||++ +.+.+...
T Consensus 12 ~~~I~iEG~~GaGKTT~~~~~L~~~l~ 38 (341)
T 1osn_A 12 VLRIYLDGAYGIGKTTAAEEFLHHFAI 38 (341)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999 99988644
No 465
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=89.87 E-value=0.15 Score=46.72 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=16.7
Q ss_pred ccEEEEEcCCCCcHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVK 173 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~ 173 (204)
-.+++|+|..|+|||||+.
T Consensus 610 Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 610 GVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEEccCCCChhhhHH
Confidence 3579999999999999973
No 466
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.84 E-value=0.25 Score=43.27 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP 197 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~ 197 (204)
.+.-|.|++|.||||++..+....... -...+.++...+-
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~ 235 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNI 235 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHH
Confidence 467799999999999877776554311 2335666654433
No 467
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=89.70 E-value=0.14 Score=41.92 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
.+.|+|+|..++|||||+..+.
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4489999999999999999887
No 468
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=89.46 E-value=0.18 Score=42.65 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 153 HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 153 ~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...--|+|+|..|+|||||...+..+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34456789999999999999988765
No 469
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.29 E-value=0.38 Score=41.69 Aligned_cols=36 Identities=22% Similarity=0.510 Sum_probs=23.9
Q ss_pred HHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 144 KEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 144 ~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+.++.-+......++-..|.||+||||+|-.+--..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l 351 (589)
T 1ihu_A 316 SALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRL 351 (589)
T ss_dssp HHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHH
Confidence 334443333344566667999999999987776554
No 470
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=89.08 E-value=0.23 Score=39.72 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
.-+.|.|..|+||||||-.+-.
T Consensus 148 ~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4588999999999999988765
No 471
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.08 E-value=0.56 Score=35.49 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHH-HHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTM-LVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTT-La~~v~~~~~ 180 (204)
.-.+.-|+|.-|.|||| |.+.+++-..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~ 54 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIY 54 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678889999999999 7788776543
No 472
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=88.81 E-value=0.79 Score=36.44 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
..-+|.+=|+-|+||+|.++.++....-+
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldpr 113 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPR 113 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 45567778999999999999999865543
No 473
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=88.57 E-value=0.24 Score=43.32 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=22.3
Q ss_pred HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 146 ILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+...+.. ...--|+|+|..|+|||||...+..+
T Consensus 157 l~~~l~~~k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 157 ISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp ----CCCCCCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred HHHHHhccCCceEEEEEECCCCCHHHHHHHHHHh
Confidence 4444433 33456889999999999999998643
No 474
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=88.55 E-value=0.35 Score=42.12 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...-|+|+|..++|||||...+..+
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Confidence 3556999999999999999888543
No 475
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=88.49 E-value=0.19 Score=41.32 Aligned_cols=25 Identities=24% Similarity=0.593 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
+..-|+|+|.+.+|||||.+.+-+.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~ 95 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGT 95 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSB
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999864
No 476
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.41 E-value=0.74 Score=39.23 Aligned_cols=48 Identities=21% Similarity=0.124 Sum_probs=33.5
Q ss_pred HHHhhcC-CCccEEEEEcCCCCcHHHHH-HHHHHHhccCCCCc-eEEEEEcCCCC
Q 046665 146 ILGSLSN-HNFNMIGVYGMGGIGKTMLV-KEVAGQAKGNNLFE-KVISAQVSQTP 197 (204)
Q Consensus 146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa-~~v~~~~~~~~~F~-~~~wv~vs~~~ 197 (204)
.++.|.. ..-.-++|.|-.|+|||+|+ ..|.|.. +-+ .++++-+.+..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~ 202 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKA 202 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCH
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCCh
Confidence 4444443 34567899999999999995 6777752 233 36788888764
No 477
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.19 E-value=0.8 Score=37.29 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=30.2
Q ss_pred ccchHHHHHHHHHh---hcCCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665 136 FESRKSTLKEILGS---LSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN 182 (204)
Q Consensus 136 ~~g~~~~~~~l~~~---L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~ 182 (204)
++|......++... +...+.. +-|.|..|.||+++|+.+++...-.
T Consensus 131 ~ig~s~~~~~~~~~~~~~a~~~~~-vli~GesGtGKe~lAr~ih~~s~r~ 179 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIAKSKAP-VLITGESGTGKEIVARLIHRYSGRK 179 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHHTSCSC-EEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred ccccchHHHHHHhhhhhhhccchh-heEEeCCCchHHHHHHHHHHhcccc
Confidence 45554444444333 3333444 5589999999999999999876533
No 478
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.13 E-value=0.31 Score=50.22 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=37.8
Q ss_pred ccchHHHHHHHHHh--hcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665 136 FESRKSTLKEILGS--LSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI 202 (204)
Q Consensus 136 ~~g~~~~~~~l~~~--L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 202 (204)
++=.++.++.|... ......+-.-+||.||+||++|++.+..-.+-. +.-+.++++|++.+.
T Consensus 1625 LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~-----vfqi~i~k~Y~~~~f 1688 (3245)
T 3vkg_A 1625 LVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLS-----IYTIKVNNNYKSSDF 1688 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCE-----EECCC----CCHHHH
T ss_pred EEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCe-----eEEEeeeCCCCHHHH
Confidence 44444444444332 233455567799999999999999998865422 345678888887653
No 479
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=87.94 E-value=0.32 Score=40.67 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...-|+|+|..++|||||...+..+
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3457899999999999999888443
No 480
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=87.90 E-value=0.14 Score=43.78 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
..++..|+|..|.|||||...++--
T Consensus 59 ~~g~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 59 GGGFCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CCSEEEEEESHHHHHHHHTHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999743
No 481
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=87.84 E-value=0.12 Score=43.94 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
-.|+|+|..|+|||||...+.+..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~ 267 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNED 267 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHT
T ss_pred CEEEEECcCCCcHHHHHHHHHCCC
Confidence 358899999999999999998874
No 482
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=87.82 E-value=0.22 Score=42.09 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=21.7
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHH
Q 046665 152 NHNFNMIGVYGMGGIGKTMLVKEVAG 177 (204)
Q Consensus 152 ~~~~~vI~IvG~gGiGKTTLa~~v~~ 177 (204)
......|+|+|..++|||||...+..
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHH
Confidence 34556789999999999999988754
No 483
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=87.42 E-value=0.34 Score=39.41 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=17.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
.--+-+.|.|++||||+.|++-
T Consensus 32 ~~klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 32 EVKLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEcCCCCCchhHHHHHH
Confidence 3456788999999999988764
No 484
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=87.03 E-value=0.43 Score=40.65 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=30.2
Q ss_pred CccEEEEEcCCCCcHHHH-HHHHHHHhccCCCCc-eEEEEEcCCCC
Q 046665 154 NFNMIGVYGMGGIGKTML-VKEVAGQAKGNNLFE-KVISAQVSQTP 197 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTL-a~~v~~~~~~~~~F~-~~~wv~vs~~~ 197 (204)
.-.-++|+|-.|+|||+| +..|.|... -+ .++++-+.+..
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~ 203 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKA 203 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCH
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCc
Confidence 346789999999999999 568887642 45 46777777655
No 485
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=86.93 E-value=0.37 Score=42.85 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+.-.|+|+|..|+|||||...+....
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44569999999999999999998653
No 486
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=86.88 E-value=0.94 Score=37.12 Aligned_cols=43 Identities=21% Similarity=0.364 Sum_probs=29.0
Q ss_pred ccchHHHHHHHHHh---hcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 136 FESRKSTLKEILGS---LSNHNFNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 136 ~~g~~~~~~~l~~~---L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
++|......++.+. +...+..| -|.|..|+|||++|+.++...
T Consensus 139 ~ig~s~~m~~l~~~i~~~a~~~~~v-li~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKISCAECPV-LITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHTTCCSCE-EEECSTTSSHHHHHHHHHHHS
T ss_pred hhhccHHhhHHHHHHHHhcCCCCCe-EEecCCCcCHHHHHHHHHHhc
Confidence 33433344444443 33445555 899999999999999999864
No 487
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=86.75 E-value=0.4 Score=41.37 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
.++=|+|+|..+.|||||+-.+.
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEEeCCCCCHHHHHHHHH
Confidence 57889999999999999998875
No 488
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=86.47 E-value=0.086 Score=44.08 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
...-|+|+|..|+|||||+..+.+.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~ 57 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQ 57 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999877643
No 489
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.06 E-value=0.94 Score=44.95 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=37.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHh
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKK 201 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 201 (204)
.-+||=|+|+.++||||||-++.-..+-. =..++||...+.+|+.-
T Consensus 1774 ~g~~~e~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~ 1819 (2050)
T 3cmu_A 1774 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY 1819 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH
T ss_pred CCcEEEEECCCCcCHHHHHHHHHHHHhhc--CCEEEEEcCccccCHHH
Confidence 45899999999999999999998654422 35689999988888653
No 490
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=85.95 E-value=0.42 Score=40.50 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQ 178 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~ 178 (204)
-.|+++|..++|||||...+...
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~ 42 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEI 42 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHCC
Confidence 46899999999999999999754
No 491
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=85.39 E-value=0.41 Score=43.46 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=17.5
Q ss_pred ccEEEEEcCCCCcHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKE 174 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~ 174 (204)
-+.+.|.|..|+||||||--
T Consensus 36 ~~l~viTGvSGSGKSSLafd 55 (842)
T 2vf7_A 36 DALVVFTGVSGSGKSSLAFG 55 (842)
T ss_dssp SSEEEEESSTTSSHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46889999999999999953
No 492
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.18 E-value=0.58 Score=38.79 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..-+.|+|..|+|||++++.+..+.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~ 77 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTG 77 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999988777654
No 493
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=85.02 E-value=0.64 Score=42.01 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
.+.-|.|++|.||||++..+....
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999998877776554
No 494
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=84.84 E-value=0.82 Score=34.44 Aligned_cols=27 Identities=15% Similarity=-0.045 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665 154 NFNMIGVYGMGGIGKTMLVKEVAGQAK 180 (204)
Q Consensus 154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~ 180 (204)
.-.+.-++|..|.||||.+-....+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~ 53 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ 53 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 346888999999999988766665543
No 495
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=84.69 E-value=2.3 Score=32.13 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 046665 158 IGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 158 I~IvG~gGiGKTTLa~~v~~~~ 179 (204)
+-|+|..|.|||.+|..+....
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7788999999999998887654
No 496
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=84.28 E-value=0.58 Score=38.75 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVA 176 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~ 176 (204)
..-+-+.|.|++||||+.|++-
T Consensus 40 ~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 40 THRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred cceEEEecCCCCchhhHHHHHH
Confidence 3456788999999999998863
No 497
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=83.16 E-value=0.68 Score=39.60 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665 155 FNMIGVYGMGGIGKTMLVKEVAGQA 179 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~~v~~~~ 179 (204)
..-+.|.|..|+||||+++.+.-..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSM 191 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999887643
No 498
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=82.59 E-value=1.5 Score=44.86 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHh
Q 046665 156 NMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKK 201 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 201 (204)
.-+.+.|++|+|||++++.+-+..+.. ++-+..+...+..+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~-----~v~~nc~e~ld~~~ 686 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRV-----VVVFNCDDSFDYQV 686 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCC-----CEEEETTSSCCHHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCc-----EEEEECCCCCChhH
Confidence 345688999999999999999866522 23335556555544
No 499
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=82.53 E-value=0.69 Score=39.68 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.8
Q ss_pred ccEEEEEcCCCCcHHHHHH
Q 046665 155 FNMIGVYGMGGIGKTMLVK 173 (204)
Q Consensus 155 ~~vI~IvG~gGiGKTTLa~ 173 (204)
-.++.+.|..|.|||||+.
T Consensus 241 g~~~lffGlSGtGKTTLs~ 259 (540)
T 2olr_A 241 GDVAVFFGLSGTGKTTLST 259 (540)
T ss_dssp SCEEEEECSTTSSHHHHHC
T ss_pred CCEEEEEccCCCCHHHHhc
Confidence 3689999999999999984
No 500
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=82.46 E-value=0.68 Score=39.71 Aligned_cols=18 Identities=39% Similarity=0.624 Sum_probs=16.4
Q ss_pred cEEEEEcCCCCcHHHHHH
Q 046665 156 NMIGVYGMGGIGKTMLVK 173 (204)
Q Consensus 156 ~vI~IvG~gGiGKTTLa~ 173 (204)
.++.+.|..|.|||||+.
T Consensus 236 ~~~~ffGlSGtGKTTLs~ 253 (532)
T 1ytm_A 236 NTAIFFGLSGTGKTTLST 253 (532)
T ss_dssp SEEEEECCTTSSHHHHHC
T ss_pred eEEEEEecCCCCHHHHhh
Confidence 589999999999999984
Done!