BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046668
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 146/325 (44%), Gaps = 29/325 (8%)
Query: 5 LKLGENHFSGEIPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSLSGQI 64
L L N+ SG IP G IP L + +L++L L N L+G+I
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 65 PASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH 124
P+ NCT L + + N G +P WIG R +L IL L +N F G +P +L SL
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 125 VLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY-PSVSTGKYVEDALLVLKGKAVEY 183
LDL N +G+IP + S + ANF G Y + K A +L+ + +
Sbjct: 539 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 598
Query: 184 NTILKL--------------------------MRLIDLSKNKFSGEIPSEIMNLRALVSL 217
+ +L M +D+S N SG IP EI ++ L L
Sbjct: 599 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 658
Query: 218 DLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIP 277
+L N +G IP+ +G L + +D S+N+L G IPQ++S+LT G IP
Sbjct: 659 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Query: 278 LSTQLQSFDPSSFTGN-RLCGSPLP 301
Q ++F P+ F N LCG PLP
Sbjct: 719 EMGQFETFPPAKFLNNPGLCGYPLP 743
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 130/275 (47%), Gaps = 60/275 (21%)
Query: 36 FTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIR 95
F+ IP LG S+LQ L++ N LSG + CT+L +L+I N+FVG +P +
Sbjct: 209 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LP 264
Query: 96 FSSLMILNLRSNKFRGVLPNQLCGL-TSLHVLDLADNHLSGSIPKCISNISSMVTA---- 150
SL L+L NKF G +P+ L G +L LDL+ NH G++P + S + +
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 151 -NFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM 209
NFS G+ D LL ++G ++++DLS N+FSGE+P +
Sbjct: 325 NNFS------------GELPMDTLLKMRG-----------LKVLDLSFNEFSGELPESLT 361
Query: 210 NLRA-LVSLDLSCNS--------------------------FTGRIPNSIGALESILSID 242
NL A L++LDLS N+ FTG+IP ++ ++S+
Sbjct: 362 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 243 FSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIP 277
S N L G IP S+ SL+ G+IP
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 125/252 (49%), Gaps = 23/252 (9%)
Query: 1 GIRILKLGENHFSGEIPDCWMXXXXXXXXXX-XXXXFTGNIPISLGM--LSSLQSLNLRK 57
G+++L L N FSGE+P+ F+G I +L ++LQ L L+
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 58 NSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQL 117
N +G+IP + NC++LV L + N G +P+ +G S L L L N G +P +L
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQEL 459
Query: 118 CGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLK 177
+ +L L L N L+G IP +SN T++ + S+S + L
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNC-----------TNLNWISLSNNR--------LT 500
Query: 178 GKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES 237
G+ ++ L+ + ++ LS N FSG IP+E+ + R+L+ LDL+ N F G IP ++
Sbjct: 501 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 238 ILSIDFSANQLY 249
++ +F A + Y
Sbjct: 561 KIAANFIAGKRY 572
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 131/265 (49%), Gaps = 11/265 (4%)
Query: 2 IRILKLGENHFSGEIPDCWMXX-XXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSL 60
++ L L EN F+GEIPD F G +P G S L+SL L N+
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 61 SGQIP-ASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRG-VLPNQLC 118
SG++P + L +LD+ NEF G +P + +SL+ L+L SN F G +LPN LC
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LC 386
Query: 119 G--LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSI----GT-DVQYPSVSTGKYVED 171
+L L L +N +G IP +SN S +V+ + S GT S+S + ++
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 172 ALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNS 231
L +L+G+ + +K + + L N +GEIPS + N L + LS N TG IP
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 232 IGALESILSIDFSANQLYGEIPQSI 256
IG LE++ + S N G IP +
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAEL 531
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 127/256 (49%), Gaps = 34/256 (13%)
Query: 48 SSLQSLNLRKNSLSGQIP--ASFQNCTKLVMLDIGEN--EFVGNVPTWIGIRFSSLMILN 103
+SL SL+L +NSLSG + S +C+ L L++ N +F G V G++ +SL +L+
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG--GLKLNSLEVLD 154
Query: 104 LRSNKFRGV-----LPNQLCGLTSLHVLDLADNHLSGSIP--KCIS-NISSMVTANFSIG 155
L +N G + + CG L L ++ N +SG + +C++ + + NFS G
Sbjct: 155 LSANSISGANVVGWVLSDGCG--ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG 212
Query: 156 -------TDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEI 208
+ +Q+ +S K D +A+ T LKL+ ++S N+F G IP
Sbjct: 213 IPFLGDCSALQHLDISGNKLSGDF-----SRAISTCTELKLL---NISSNQFVGPIPP-- 262
Query: 209 MNLRALVSLDLSCNSFTGRIPNSI-GALESILSIDFSANQLYGEIPQSISSLTFXXXXXX 267
+ L++L L L+ N FTG IP+ + GA +++ +D S N YG +P S +
Sbjct: 263 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 268 XXXXXXGKIPLSTQLQ 283
G++P+ T L+
Sbjct: 323 SSNNFSGELPMDTLLK 338
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 24/86 (27%)
Query: 4 ILKLGENHFSGEIPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSLSGQ 63
IL LG N SG IPD +G L L L+L N L G+
Sbjct: 657 ILNLGHNDISGSIPD------------------------EVGDLRGLNILDLSSNKLDGR 692
Query: 64 IPASFQNCTKLVMLDIGENEFVGNVP 89
IP + T L +D+ N G +P
Sbjct: 693 IPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 57/235 (24%)
Query: 128 LADNHLSGSIP--KCISNISSM----------VTANFSIGT------------DVQYPSV 163
L+++H++GS+ KC ++++S+ VT S+G+ + +P
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 164 STGKYVEDALLVLKGKAVEYNTI-------------LKLMRLIDLSKNKFSGEIPSEIMN 210
+G ++L VL A N+I ++ + +S NK SG++ ++
Sbjct: 141 VSGGLKLNSLEVLDLSA---NSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSR 195
Query: 211 LRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFXXXXXXXXX 270
L LD+S N+F+ IP +G ++ +D S N+L G+ ++IS+ T
Sbjct: 196 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 271 XXXGKIP----LSTQLQSFDPSSFTG----------NRLCGSPLPNNCFVAAPAP 311
G IP S Q S + FTG + L G L N F A P
Sbjct: 255 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 146/325 (44%), Gaps = 29/325 (8%)
Query: 5 LKLGENHFSGEIPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSLSGQI 64
L L N+ SG IP G IP L + +L++L L N L+G+I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 65 PASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH 124
P+ NCT L + + N G +P WIG R +L IL L +N F G +P +L SL
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 125 VLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY-PSVSTGKYVEDALLVLKGKAVEY 183
LDL N +G+IP + S + ANF G Y + K A +L+ + +
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 184 NTILKL--------------------------MRLIDLSKNKFSGEIPSEIMNLRALVSL 217
+ +L M +D+S N SG IP EI ++ L L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
Query: 218 DLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIP 277
+L N +G IP+ +G L + +D S+N+L G IPQ++S+LT G IP
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Query: 278 LSTQLQSFDPSSFTGNR-LCGSPLP 301
Q ++F P+ F N LCG PLP
Sbjct: 722 EMGQFETFPPAKFLNNPGLCGYPLP 746
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 130/275 (47%), Gaps = 60/275 (21%)
Query: 36 FTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIR 95
F+ IP LG S+LQ L++ N LSG + CT+L +L+I N+FVG +P +
Sbjct: 212 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LP 267
Query: 96 FSSLMILNLRSNKFRGVLPNQLCGL-TSLHVLDLADNHLSGSIPKCISNISSMVTA---- 150
SL L+L NKF G +P+ L G +L LDL+ NH G++P + S + +
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 151 -NFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM 209
NFS G+ D LL ++G ++++DLS N+FSGE+P +
Sbjct: 328 NNFS------------GELPMDTLLKMRG-----------LKVLDLSFNEFSGELPESLT 364
Query: 210 NLRA-LVSLDLSCNS--------------------------FTGRIPNSIGALESILSID 242
NL A L++LDLS N+ FTG+IP ++ ++S+
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 243 FSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIP 277
S N L G IP S+ SL+ G+IP
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 125/252 (49%), Gaps = 23/252 (9%)
Query: 1 GIRILKLGENHFSGEIPDCWMXXXXXXXXXX-XXXXFTGNIPISLGM--LSSLQSLNLRK 57
G+++L L N FSGE+P+ F+G I +L ++LQ L L+
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 58 NSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQL 117
N +G+IP + NC++LV L + N G +P+ +G S L L L N G +P +L
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQEL 462
Query: 118 CGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLK 177
+ +L L L N L+G IP +SN T++ + S+S + L
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNC-----------TNLNWISLSNNR--------LT 503
Query: 178 GKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES 237
G+ ++ L+ + ++ LS N FSG IP+E+ + R+L+ LDL+ N F G IP ++
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 238 ILSIDFSANQLY 249
++ +F A + Y
Sbjct: 564 KIAANFIAGKRY 575
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 131/265 (49%), Gaps = 11/265 (4%)
Query: 2 IRILKLGENHFSGEIPDCWMXX-XXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSL 60
++ L L EN F+GEIPD F G +P G S L+SL L N+
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 61 SGQIP-ASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRG-VLPNQLC 118
SG++P + L +LD+ NEF G +P + +SL+ L+L SN F G +LPN LC
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LC 389
Query: 119 G--LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSI----GT-DVQYPSVSTGKYVED 171
+L L L +N +G IP +SN S +V+ + S GT S+S + ++
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 172 ALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNS 231
L +L+G+ + +K + + L N +GEIPS + N L + LS N TG IP
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 232 IGALESILSIDFSANQLYGEIPQSI 256
IG LE++ + S N G IP +
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAEL 534
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 127/256 (49%), Gaps = 34/256 (13%)
Query: 48 SSLQSLNLRKNSLSGQIP--ASFQNCTKLVMLDIGEN--EFVGNVPTWIGIRFSSLMILN 103
+SL SL+L +NSLSG + S +C+ L L++ N +F G V G++ +SL +L+
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG--GLKLNSLEVLD 157
Query: 104 LRSNKFRGV-----LPNQLCGLTSLHVLDLADNHLSGSIP--KCIS-NISSMVTANFSIG 155
L +N G + + CG L L ++ N +SG + +C++ + + NFS G
Sbjct: 158 LSANSISGANVVGWVLSDGCG--ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG 215
Query: 156 -------TDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEI 208
+ +Q+ +S K D +A+ T LKL+ ++S N+F G IP
Sbjct: 216 IPFLGDCSALQHLDISGNKLSGDF-----SRAISTCTELKLL---NISSNQFVGPIPP-- 265
Query: 209 MNLRALVSLDLSCNSFTGRIPNSI-GALESILSIDFSANQLYGEIPQSISSLTFXXXXXX 267
+ L++L L L+ N FTG IP+ + GA +++ +D S N YG +P S +
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 268 XXXXXXGKIPLSTQLQ 283
G++P+ T L+
Sbjct: 326 SSNNFSGELPMDTLLK 341
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 24/86 (27%)
Query: 4 ILKLGENHFSGEIPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSLSGQ 63
IL LG N SG IPD +G L L L+L N L G+
Sbjct: 660 ILNLGHNDISGSIPD------------------------EVGDLRGLNILDLSSNKLDGR 695
Query: 64 IPASFQNCTKLVMLDIGENEFVGNVP 89
IP + T L +D+ N G +P
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 57/235 (24%)
Query: 128 LADNHLSGSIP--KCISNISSM----------VTANFSIGT------------DVQYPSV 163
L+++H++GS+ KC ++++S+ VT S+G+ + +P
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 164 STGKYVEDALLVLKGKAVEYNTI-------------LKLMRLIDLSKNKFSGEIPSEIMN 210
+G ++L VL A N+I ++ + +S NK SG++ ++
Sbjct: 144 VSGGLKLNSLEVLDLSA---NSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSR 198
Query: 211 LRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFXXXXXXXXX 270
L LD+S N+F+ IP +G ++ +D S N+L G+ ++IS+ T
Sbjct: 199 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 271 XXXGKIP----LSTQLQSFDPSSFTG----------NRLCGSPLPNNCFVAAPAP 311
G IP S Q S + FTG + L G L N F A P
Sbjct: 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 124/292 (42%), Gaps = 54/292 (18%)
Query: 44 LGMLSSLQSLNLRKNSL--SG-------QIPASFQNCTKLVMLDIGE-NEFVGNVPTWIG 93
LG+L + R N+L SG IP+S N L L IG N VG +P I
Sbjct: 39 LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98
Query: 94 IRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFS 153
+ + L L + G +P+ L + +L LD + N LSG++P IS++ ++V F
Sbjct: 99 -KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 154 IGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRA 213
G + A+ Y + KL + +S+N+ +G+IP NL
Sbjct: 158 ------------GNRISGAI------PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198
Query: 214 LVSLDLSCNSFTGRIP-----------------------NSIGALESILSIDFSANQLYG 250
L +DLS N G +G +++ +D N++YG
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258
Query: 251 EIPQSISSLTFXXXXXXXXXXXXGKIPLSTQLQSFDPSSFTGNR-LCGSPLP 301
+PQ ++ L F G+IP LQ FD S++ N+ LCGSPLP
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 45 GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL 104
G L L L L++N L+G P +F+ + + L +GEN+ + + + + L LNL
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNL 109
Query: 105 RSNKFRGVLPNQLCGLTSLHVLDLADN 131
N+ V+P L SL L+LA N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 47 LSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNV 88
L L++LNL N +S +P SF++ L L++ N F N
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 40 IPISL-GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSS 98
+PI + L +L L L +N L P F + TKL L +G NE + ++P + + +S
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTS 158
Query: 99 LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
L L L +N+ + V LT L L L +N L
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 14/161 (8%)
Query: 48 SSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSN 107
S++ LNL N L P +F ++L +LD G N P I L +LNL+ N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQI-LPLLKVLNLQHN 83
Query: 108 KFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFS--------IGTDVQ 159
+ + T+L LDL N + N +++ + S +GT VQ
Sbjct: 84 ELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQ 143
Query: 160 YPSVSTGKYVEDALLVLKGKAVEY--NTILKLMRLIDLSKN 198
++ ++ +L L+ + +E+ N+ L R +DLS N
Sbjct: 144 LENLQELLLAKNKILALRSEELEFLGNSSL---RKLDLSSN 181
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 29/214 (13%)
Query: 43 SLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN----EFVGNVPTWIGIRFSS 98
S L L+ LN+ N++ +F L L + + + + N T++ + S
Sbjct: 324 SFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTN-ETFVSLAHSP 382
Query: 99 LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNH----LSGSIPKCISNISSMVTANFSI 154
L+ LNL N + L L +LDL N LSG + + NI + S
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIY---LSY 439
Query: 155 GTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRAL 214
+Q + S L+L+ A ++ +D+S PS LR L
Sbjct: 440 NKYLQLSTSSFALVPSLQRLMLRRVA---------LKNVDIS--------PSPFRPLRNL 482
Query: 215 VSLDLSCNSFTGRIPNSIGALESILSIDFSANQL 248
LDLS N+ + + LE++ +DF N L
Sbjct: 483 TILDLSNNNIANINEDLLEGLENLEILDFQHNNL 516
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 43 SLGMLSSLQSLNLRKNSLSGQI--PASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLM 100
S ++ SLQ L LR+ +L P+ F+ L +LD+ N + N+ + +L
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNN-IANINEDLLEGLENLE 507
Query: 101 ILNLRSNKFR--------GVLPNQLCGLTSLHVLDLADNHLSGSIP 138
IL+ + N G N L GL+ LH+L+L N L IP
Sbjct: 508 ILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGL-DEIP 552
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 42 ISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI 101
+ L LS LQ+LNL N G +F+ C +L +LD+ N P L +
Sbjct: 367 LQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQV 426
Query: 102 LNLRSNKFRGVLPNQLCGLTSLHVLDLADNHL-SGSIPK 139
LNL + L GL L L+L NH G+I K
Sbjct: 427 LNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITK 465
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 9/171 (5%)
Query: 93 GIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANF 152
G+ S+ LNL+ ++F + T L LDL HL G +P + ++ +
Sbjct: 247 GLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVL 305
Query: 153 SIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN----TILKL--MRLIDLSKNKFSGE--I 204
S+ Q +S + L ++G + + + KL ++ +DLS N
Sbjct: 306 SVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCC 365
Query: 205 PSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQS 255
++ NL L +L+LS N G + + +D + +L+ PQS
Sbjct: 366 SLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS 416
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 49 SLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNK 108
S++SLNL+++ S +FQ T+L LD+ G G+ ++L++ N
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSV--NH 309
Query: 109 FRGVLPNQLCGLTSLHVLDLADNHLSGSIPK------CISNISSMVTANFS 153
F +QLC +++ + L ++ G++ K C+ + ++ T + S
Sbjct: 310 F-----DQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLS 355
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 47 LSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRS 106
L L+ +N N ++ +F+ + + + + N + NV + SL L LRS
Sbjct: 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRS 114
Query: 107 NKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANF 152
N+ V + GL+S+ +L L DN ++ P + S+ T N
Sbjct: 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 210 NLRALVSLDLSCNSFTG-RIPNSIGALESILSIDFSANQLY 249
NL+AL LDLS N + S G L S+ SIDFS+NQ++
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 47 LSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRS 106
LS L+ L LR N + +F L LD+GE + + + S+L LNL
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194
Query: 107 NKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
R + PN L L L LDL+ NHLS P
Sbjct: 195 CNLREI-PN-LTPLIKLDELDLSGNHLSAIRP 224
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 47 LSSLQSLNLRKNSLSGQ-IPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLR 105
LSSL+ L + NS +P F L LD+ + + PT SSL +LN+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMA 502
Query: 106 SNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPK 139
SN+ + V LTSL + L N S P+
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 21/209 (10%)
Query: 42 ISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI 101
+ L LS LQSLNL N +F+ C +L +LD+ L +
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429
Query: 102 LNLRSNKFRGVLPNQLC-GLTSLHVLDLADNHL-SGSIPKCISNISSMVTANFSIGTDVQ 159
LNL S+ + QL GL +L L+L NH G+I K +++ ++ + +
Sbjct: 430 LNL-SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK-TNSLQTLGRLEILVLSFCD 487
Query: 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDL 219
S+ + T LK+M +DLS N+ + + +L+ + L+L
Sbjct: 488 LSSIDQHAF----------------TSLKMMNHVDLSHNRLTSSSIEALSHLKG-IYLNL 530
Query: 220 SCNSFTGRIPNSIGALESILSIDFSANQL 248
+ N + +P+ + L +I+ N L
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPL 559
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 23/115 (20%)
Query: 43 SLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF--------VGNVPTWIGI 94
+L L+SLQ LN N ++ P N T L LDI N+ + N+ + I
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 95 R-----------FSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
++L L+L N+ + + L LT+L LDLA+N +S P
Sbjct: 204 NNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 19/208 (9%)
Query: 42 ISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI 101
+ L L LQ LNL N G +F+ C +L +LD+ P L +
Sbjct: 369 LQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRV 428
Query: 102 LNLRSNKFRGVLPNQLCGLTSLHVLDLADNHL-SGSIPKCISNISSMVTANFSIGTDVQY 160
LNL + L GL L L+L N GSI K +N+ MV + ++
Sbjct: 429 LNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISK--TNLLQMVGS-------LEI 479
Query: 161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLS 220
+S+ LL + +A L+ + +DLS N +G+ + +L+ L L+++
Sbjct: 480 LILSSCN-----LLSIDQQAFHG---LRNVNHLDLSHNSLTGDSMDALSHLKGLY-LNMA 530
Query: 221 CNSFTGRIPNSIGALESILSIDFSANQL 248
N+ P+ + AL I+ S N L
Sbjct: 531 SNNIRIIPPHLLPALSQQSIINLSHNPL 558
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 9/174 (5%)
Query: 90 TWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVT 149
T+ G+ S+ +NL+ ++F + + T + LDL HL+G +P I ++S+
Sbjct: 246 TFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKK 304
Query: 150 ANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN------TILKLMRLIDLSKNKFSGE 203
+ + Q ++ + L +KG + + L+ ++ +DLS +
Sbjct: 305 LVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEAS 364
Query: 204 --IPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQS 255
++ NLR L L+LS N G + + +D + L+ + P S
Sbjct: 365 DCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 43 SLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL 102
+L L++L L L N L F T L L + EN+ ++P + + ++L L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYL 138
Query: 103 NLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI 141
NL N+ + + LT+L LDL+ N L S+P+ +
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGV 176
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 47 LSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRS 106
L+ L L+L +N + F TKL +L + EN+ ++P + + + L L L +
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKELALDT 109
Query: 107 NKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPK 139
N+ + V LTSL + L N S P+
Sbjct: 110 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 84/214 (39%), Gaps = 29/214 (13%)
Query: 43 SLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG----NVPTWIGIRFSS 98
S L L+ LN+ N + G F L L + N F T++ + S
Sbjct: 329 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSP 387
Query: 99 LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADN----HLSGSIPKCISNISSMVTANFSI 154
L ILNL NK + + L L VLDL N L+G + + NI F I
Sbjct: 388 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI-------FEI 440
Query: 155 GTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRAL 214
+S KY++ L A+ + ++R + L KN S PS LR L
Sbjct: 441 -------YLSYNKYLQ---LTRNSFALVPSLQRLMLRRVAL-KNVDSS--PSPFQPLRNL 487
Query: 215 VSLDLSCNSFTGRIPNSIGALESILSIDFSANQL 248
LDLS N+ + + LE + +D N L
Sbjct: 488 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 521
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 53 LNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV 112
LNL N L A+F ++L LD+G N + + + + L +LNL+ N+
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNEL--- 90
Query: 113 LPNQLCGLTSLHVLDLADNHL-SGSIPKCISNISSMVTANFSIGTDVQYPSVSTGK 167
+QL T +L + HL S SI K +N V I D+ + +S+ K
Sbjct: 91 --SQLSDKTFAFCTNLTELHLMSNSIQKIKNN--PFVKQKNLITLDLSHNGLSSTK 142
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 95 RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
R + L L+L N+ ++P L GLT L L L+ NH+S
Sbjct: 151 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 84/214 (39%), Gaps = 29/214 (13%)
Query: 43 SLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG----NVPTWIGIRFSS 98
S L L+ LN+ N + G F L L + N F T++ + S
Sbjct: 334 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSP 392
Query: 99 LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADN----HLSGSIPKCISNISSMVTANFSI 154
L ILNL NK + + L L VLDL N L+G + + NI F I
Sbjct: 393 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI-------FEI 445
Query: 155 GTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRAL 214
+S KY++ L A+ + ++R + L KN S PS LR L
Sbjct: 446 -------YLSYNKYLQ---LTRNSFALVPSLQRLMLRRVAL-KNVDSS--PSPFQPLRNL 492
Query: 215 VSLDLSCNSFTGRIPNSIGALESILSIDFSANQL 248
LDLS N+ + + LE + +D N L
Sbjct: 493 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 526
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 95 RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
R + L L+L N+ ++P L GLT L L L+ NH+S
Sbjct: 154 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 28/128 (21%)
Query: 44 LGMLSSLQSLNLRKNSL-SGQIPASFQNCTKLVMLDIGEN----------EFVGNVPTWI 92
+G L +L+ LN+ N + S ++PA F N T LV +D+ N +F+ P
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP--- 180
Query: 93 GIRFSSLMILN----LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPK-CISNISSM 147
+ S M LN ++ F+G+ LH L L N S +I K C+ N++ +
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGI---------KLHELTLRGNFNSSNIMKTCLQNLAGL 231
Query: 148 VTANFSIG 155
+G
Sbjct: 232 HVHRLILG 239
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 84/214 (39%), Gaps = 29/214 (13%)
Query: 43 SLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG----NVPTWIGIRFSS 98
S L L+ LN+ N + G F L L + N F T++ + S
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSP 382
Query: 99 LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADN----HLSGSIPKCISNISSMVTANFSI 154
L ILNL NK + + L L VLDL N L+G + + NI F I
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI-------FEI 435
Query: 155 GTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRAL 214
+S KY++ L A+ + ++R + L KN S PS LR L
Sbjct: 436 -------YLSYNKYLQ---LTRNSFALVPSLQRLMLRRVAL-KNVDSS--PSPFQPLRNL 482
Query: 215 VSLDLSCNSFTGRIPNSIGALESILSIDFSANQL 248
LDLS N+ + + LE + +D N L
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 28/128 (21%)
Query: 44 LGMLSSLQSLNLRKNSL-SGQIPASFQNCTKLVMLDIGEN----------EFVGNVPTWI 92
+G L +L+ LN+ N + S ++PA F N T LV +D+ N +F+ P
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP--- 175
Query: 93 GIRFSSLMILN----LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPK-CISNISSM 147
+ S M LN ++ F+G+ LH L L N S +I K C+ N++ +
Sbjct: 176 QVNLSLDMSLNPIDFIQDQAFQGI---------KLHELTLRGNFNSSNIMKTCLQNLAGL 226
Query: 148 VTANFSIG 155
+G
Sbjct: 227 HVHRLILG 234
>pdb|3CG1|A Chain A, Crystal Structure Of P. Furiosus Periplasmic Binding
Protein ModaWTPA WITH BOUND TUNGSTATE
pdb|3CG1|B Chain B, Crystal Structure Of P. Furiosus Periplasmic Binding
Protein ModaWTPA WITH BOUND TUNGSTATE
Length = 296
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 27/115 (23%)
Query: 114 PNQL-CGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP---SVSTGKYV 169
PNQ CG SL V+ LAD + I K + ++ + +N GT + P +V+ GK V
Sbjct: 129 PNQDPCGYRSLMVIKLADLYYGKEIFKELIEENTNIYSN---GTQIYAPKEITVNPGKIV 185
Query: 170 E----------------DALLVLKGKAVEYN----TILKLMRLIDLSKNKFSGEI 204
D + + K A ++N T+ + L D SK KF G+I
Sbjct: 186 IRPKETDLLGLVESGSIDYIFIYKSVAKQHNLSYITLPSEINLGDFSKEKFYGQI 240
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 23/115 (20%)
Query: 43 SLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF--------VGNVPTWIGI 94
+L L+SLQ L+ N ++ P N T L LDI N+ + N+ + I
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 95 R-----------FSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
++L L+L N+ + + L LT+L LDLA+N +S P
Sbjct: 204 NNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 23/115 (20%)
Query: 43 SLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF--------VGNVPTWIGI 94
+L L+SLQ L+ N ++ P N T L LDI N+ + N+ + I
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 95 R-----------FSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
++L L+L N+ + + L LT+L LDLA+N +S P
Sbjct: 204 NNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 95 RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
R + L L+L N+ ++P L GLT L L L+ NH+S
Sbjct: 152 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 189
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 95 RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
R + L L+L N+ ++P L GLT L L L+ NH+S
Sbjct: 174 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 211
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 95 RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
R + L L+L N+ ++P L GLT L L L+ NH+S
Sbjct: 154 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 1/117 (0%)
Query: 1 GIRILKLGENHFSGE-IPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNS 59
+ +LK+ N F +PD + P + LSSLQ LN+ N+
Sbjct: 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Query: 60 LSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQ 116
++ L +LD N + + + SSL LNL N F +Q
Sbjct: 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 95 RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG 135
R + L L+L N+ ++P L GLT L L L+ NH+S
Sbjct: 149 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 187
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 47 LSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRS 106
L +L+ L L N L F + T+L +LD+G N+ +P+ + R L L +
Sbjct: 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCC 121
Query: 107 NKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
NK LP + LT L L L N L SIP
Sbjct: 122 NKLTE-LPRGIERLTHLTHLALDQNQLK-SIP 151
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 95 RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
R + L L+L N+ ++P L GLT L L L+ NH+S
Sbjct: 172 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 209
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 95 RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
R + L L+L N+ ++P L GLT L L L+ NH+S
Sbjct: 172 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 209
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 95 RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
R + L L+L N+ ++P L GLT L L L+ NH+S
Sbjct: 172 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 209
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 44 LGMLSSLQSLNLRKNSLSG-QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL 102
L L++L+ L++ N +S + A N L I N + ++ T +GI ++L L
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDI-TPLGI-LTNLDEL 226
Query: 103 NLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
+L N+ + + L LT+L LDLA+N +S P
Sbjct: 227 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 44 LGMLSSLQSLNLRKNSLSG-QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL 102
L L++L+ L++ N +S + A N L I N + ++ T +GI ++L L
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDI-TPLGI-LTNLDEL 221
Query: 103 NLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
+L N+ + + L LT+L LDLA+N +S P
Sbjct: 222 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 255
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 1/117 (0%)
Query: 1 GIRILKLGENHFSGE-IPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNS 59
+ +LK+ N F +PD + P + LSSLQ LN+ N+
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Query: 60 LSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQ 116
++ L +LD N + + + SSL LNL N F +Q
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 44 LGMLSSLQSLNLRKNSLSG-QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL 102
L L++L+ L++ N +S + A N L I N + ++ T +GI ++L L
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDI-TPLGI-LTNLDEL 221
Query: 103 NLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
+L N+ + + L LT+L LDLA+N +S P
Sbjct: 222 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 255
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 44 LGMLSSLQSLNLRKNSLSG-QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL 102
L L++L+ L++ N +S + A N L I N + ++ T +GI ++L L
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDI-TPLGI-LTNLDEL 225
Query: 103 NLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
+L N+ + + L LT+L LDLA+N +S P
Sbjct: 226 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 259
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 25/90 (27%)
Query: 42 ISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI 101
+ G+ +S Q + L N +S ASFQ+C L +L W
Sbjct: 25 VPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTIL-------------W---------- 61
Query: 102 LNLRSNKFRGVLPNQLCGLTSLHVLDLADN 131
L SN G+ GLT L LDL+DN
Sbjct: 62 --LHSNALAGIDAAAFTGLTLLEQLDLSDN 89
>pdb|3SYJ|A Chain A, Crystal Structure Of The Haemophilus Influenzae Hap
Adhesin
Length = 1011
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 111 GVLPNQ---LC------GLTSLHVLDLADNHLSGSIPKCISNISSMVTAN 151
GV+PNQ +C GLT+ +DL D + SIPK N S +T N
Sbjct: 663 GVVPNQQNTICTRSDWTGLTTCQKVDLTDTKVINSIPKTQINGSINLTDN 712
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 97 SSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG 135
++L +L L+S++ + + L SL LDL+DNHLS
Sbjct: 76 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 114
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 97 SSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG 135
++L +L L+S++ + + L SL LDL+DNHLS
Sbjct: 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,602,892
Number of Sequences: 62578
Number of extensions: 329056
Number of successful extensions: 954
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 172
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)