Query 046668
Match_columns 381
No_of_seqs 307 out of 3926
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-35 2.5E-40 306.3 24.4 298 1-299 285-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2E-34 4.2E-39 297.2 24.3 297 1-298 261-586 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.3E-31 2.8E-36 241.2 3.6 272 2-293 127-402 (873)
4 KOG4194 Membrane glycoprotein 100.0 5.4E-31 1.2E-35 237.2 1.0 276 2-278 151-457 (873)
5 KOG0444 Cytoskeletal regulator 99.9 5.5E-28 1.2E-32 219.8 -2.6 247 2-273 57-304 (1255)
6 KOG4237 Extracellular matrix p 99.9 8.4E-28 1.8E-32 207.3 -2.0 296 3-299 70-385 (498)
7 KOG0444 Cytoskeletal regulator 99.9 3.5E-27 7.5E-32 214.6 -1.7 271 2-299 80-379 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 1.5E-26 3.2E-31 200.1 -8.1 262 2-295 47-309 (565)
9 KOG0472 Leucine-rich repeat pr 99.9 2.7E-25 5.9E-30 192.4 -1.2 284 2-296 185-541 (565)
10 KOG4237 Extracellular matrix p 99.9 2.3E-23 5E-28 180.1 -0.9 270 25-295 68-358 (498)
11 PLN03210 Resistant to P. syrin 99.8 1.5E-19 3.3E-24 187.8 21.3 279 2-293 591-903 (1153)
12 PLN03210 Resistant to P. syrin 99.8 1.6E-19 3.5E-24 187.6 21.5 262 1-272 612-905 (1153)
13 PRK15370 E3 ubiquitin-protein 99.8 7.8E-20 1.7E-24 178.7 15.5 222 2-273 180-401 (754)
14 PRK15387 E3 ubiquitin-protein 99.8 9E-20 2E-24 177.3 14.9 241 3-277 204-462 (788)
15 KOG0618 Serine/threonine phosp 99.8 3.8E-22 8.3E-27 189.2 -4.2 245 2-272 243-488 (1081)
16 KOG0618 Serine/threonine phosp 99.8 1.9E-21 4E-26 184.6 0.3 261 24-294 219-487 (1081)
17 PRK15387 E3 ubiquitin-protein 99.8 3.5E-19 7.5E-24 173.3 16.0 241 24-298 201-460 (788)
18 PRK15370 E3 ubiquitin-protein 99.8 1E-19 2.2E-24 177.9 11.7 226 1-274 200-429 (754)
19 KOG0617 Ras suppressor protein 99.8 5.1E-21 1.1E-25 147.6 -3.7 182 45-276 30-215 (264)
20 cd00116 LRR_RI Leucine-rich re 99.8 1.7E-19 3.8E-24 163.3 2.6 255 4-274 2-292 (319)
21 cd00116 LRR_RI Leucine-rich re 99.8 1.3E-19 2.9E-24 164.0 1.3 255 2-272 25-319 (319)
22 KOG0617 Ras suppressor protein 99.7 5.3E-20 1.1E-24 142.0 -3.5 181 22-252 31-215 (264)
23 PLN03150 hypothetical protein; 99.6 9.5E-16 2.1E-20 149.4 11.8 116 189-304 419-537 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 1.6E-15 3.4E-20 137.7 -5.4 127 22-155 73-199 (722)
25 KOG0532 Leucine-rich repeat (L 99.4 7.9E-15 1.7E-19 133.3 -3.6 195 46-270 73-270 (722)
26 COG4886 Leucine-rich repeat (L 99.4 4.4E-13 9.6E-18 124.9 7.2 106 28-139 97-203 (394)
27 COG4886 Leucine-rich repeat (L 99.3 1.2E-12 2.7E-17 122.0 6.9 196 52-276 97-293 (394)
28 PLN03150 hypothetical protein; 99.3 3.8E-12 8.3E-17 124.3 9.3 109 25-134 419-528 (623)
29 KOG3207 Beta-tubulin folding c 99.3 4.9E-13 1.1E-17 118.1 1.7 88 187-274 245-340 (505)
30 KOG3207 Beta-tubulin folding c 99.3 3.1E-13 6.7E-18 119.3 -0.7 39 210-249 299-339 (505)
31 PF14580 LRR_9: Leucine-rich r 99.3 2.7E-12 5.7E-17 103.4 4.4 128 20-153 15-148 (175)
32 KOG1909 Ran GTPase-activating 99.3 6E-13 1.3E-17 114.4 -0.3 239 20-273 26-311 (382)
33 PF14580 LRR_9: Leucine-rich r 99.2 1.1E-11 2.4E-16 99.8 6.0 124 1-130 20-149 (175)
34 KOG1259 Nischarin, modulator o 99.2 1.9E-12 4E-17 109.3 1.3 203 20-275 210-414 (490)
35 KOG4658 Apoptotic ATPase [Sign 99.2 2.8E-11 6E-16 121.0 5.0 267 3-274 526-808 (889)
36 PF13855 LRR_8: Leucine rich r 99.1 4.6E-11 1E-15 79.3 4.1 60 24-83 1-60 (61)
37 KOG1259 Nischarin, modulator o 99.1 1.8E-11 3.8E-16 103.5 0.0 137 18-161 278-415 (490)
38 PF13855 LRR_8: Leucine rich r 99.1 1.4E-10 3E-15 77.0 4.0 60 1-60 2-61 (61)
39 KOG0531 Protein phosphatase 1, 99.0 4.1E-11 8.9E-16 112.0 -0.3 129 22-158 70-199 (414)
40 KOG4658 Apoptotic ATPase [Sign 99.0 7.6E-10 1.6E-14 110.9 7.1 126 2-129 547-676 (889)
41 KOG1909 Ran GTPase-activating 99.0 3.4E-11 7.3E-16 103.8 -2.7 233 1-249 31-311 (382)
42 KOG0531 Protein phosphatase 1, 99.0 9.7E-11 2.1E-15 109.5 -0.2 241 2-276 74-321 (414)
43 KOG1859 Leucine-rich repeat pr 98.7 2.3E-10 5E-15 107.5 -7.4 179 17-249 102-292 (1096)
44 KOG2982 Uncharacterized conser 98.6 7.2E-09 1.6E-13 87.8 -1.0 113 20-133 41-158 (418)
45 KOG2120 SCF ubiquitin ligase, 98.4 2.9E-09 6.3E-14 90.2 -6.7 180 2-225 187-376 (419)
46 COG5238 RNA1 Ran GTPase-activa 98.4 4.2E-08 9.1E-13 82.2 -0.7 238 21-273 27-316 (388)
47 KOG1859 Leucine-rich repeat pr 98.4 3.9E-09 8.5E-14 99.4 -7.8 123 3-133 167-291 (1096)
48 KOG4579 Leucine-rich repeat (L 98.3 2.2E-08 4.9E-13 75.2 -3.1 102 4-110 31-136 (177)
49 KOG2120 SCF ubiquitin ligase, 98.3 3E-08 6.4E-13 84.2 -3.4 179 73-270 186-373 (419)
50 KOG1644 U2-associated snRNP A' 98.3 1.7E-06 3.7E-11 69.6 6.0 103 25-131 43-150 (233)
51 KOG4579 Leucine-rich repeat (L 98.2 6.9E-08 1.5E-12 72.6 -2.5 107 2-114 55-163 (177)
52 COG5238 RNA1 Ran GTPase-activa 98.2 7E-07 1.5E-11 75.1 3.0 216 44-274 26-286 (388)
53 KOG3665 ZYG-1-like serine/thre 98.2 8E-07 1.7E-11 87.2 2.1 133 1-136 123-265 (699)
54 PF12799 LRR_4: Leucine Rich r 98.1 2.3E-06 5E-11 52.0 3.1 36 49-85 2-37 (44)
55 PF13306 LRR_5: Leucine rich r 98.1 9.5E-06 2.1E-10 62.7 7.3 124 17-147 5-128 (129)
56 PF12799 LRR_4: Leucine Rich r 98.1 2.9E-06 6.4E-11 51.5 3.0 36 25-61 2-37 (44)
57 KOG2982 Uncharacterized conser 98.1 2.8E-06 6.1E-11 72.5 3.4 212 47-275 44-264 (418)
58 KOG1644 U2-associated snRNP A' 98.0 1.6E-05 3.6E-10 64.1 6.2 125 26-155 21-150 (233)
59 PRK15386 type III secretion pr 97.9 6.5E-05 1.4E-09 68.5 9.3 93 20-130 48-141 (426)
60 PF13306 LRR_5: Leucine rich r 97.9 3E-05 6.4E-10 59.9 6.2 117 1-124 13-129 (129)
61 PRK15386 type III secretion pr 97.9 4.9E-05 1.1E-09 69.3 7.5 74 46-133 50-124 (426)
62 KOG3665 ZYG-1-like serine/thre 97.6 3.2E-05 6.9E-10 76.2 1.8 80 72-153 122-203 (699)
63 KOG2739 Leucine-rich acidic nu 97.5 3.6E-05 7.8E-10 64.7 1.8 61 22-84 41-103 (260)
64 KOG2739 Leucine-rich acidic nu 97.5 6.3E-05 1.4E-09 63.3 2.5 80 2-85 45-129 (260)
65 KOG2123 Uncharacterized conser 97.3 1.4E-05 2.9E-10 67.7 -4.1 97 2-103 21-123 (388)
66 KOG2123 Uncharacterized conser 97.0 2.9E-05 6.3E-10 65.8 -4.6 100 47-151 18-123 (388)
67 KOG1947 Leucine rich repeat pr 96.4 0.00055 1.2E-08 65.6 -1.2 113 22-134 186-308 (482)
68 PF00560 LRR_1: Leucine Rich R 96.2 0.0022 4.8E-08 32.3 0.9 20 1-21 1-20 (22)
69 KOG4341 F-box protein containi 96.1 0.00012 2.5E-09 65.7 -7.0 87 187-273 319-414 (483)
70 PF00560 LRR_1: Leucine Rich R 95.9 0.0044 9.5E-08 31.2 1.1 12 50-61 2-13 (22)
71 KOG1947 Leucine rich repeat pr 95.6 0.00093 2E-08 64.0 -3.7 110 47-156 187-306 (482)
72 KOG4308 LRR-containing protein 95.0 9.4E-05 2E-09 69.8 -12.1 184 26-249 89-303 (478)
73 PF13504 LRR_7: Leucine rich r 94.0 0.033 7.2E-07 25.9 1.2 11 74-84 3-13 (17)
74 smart00369 LRR_TYP Leucine-ric 93.9 0.063 1.4E-06 28.1 2.3 22 71-93 1-22 (26)
75 smart00370 LRR Leucine-rich re 93.9 0.063 1.4E-06 28.1 2.3 22 71-93 1-22 (26)
76 KOG0473 Leucine-rich repeat pr 93.8 0.0029 6.3E-08 52.6 -4.4 86 185-273 39-124 (326)
77 KOG0473 Leucine-rich repeat pr 93.8 0.0017 3.6E-08 54.0 -5.9 96 35-134 29-124 (326)
78 smart00369 LRR_TYP Leucine-ric 92.7 0.094 2E-06 27.4 1.8 14 24-37 2-15 (26)
79 smart00370 LRR Leucine-rich re 92.7 0.094 2E-06 27.4 1.8 14 24-37 2-15 (26)
80 PF08693 SKG6: Transmembrane a 91.4 0.24 5.2E-06 28.8 2.5 27 332-358 12-38 (40)
81 TIGR00864 PCC polycystin catio 90.4 0.16 3.4E-06 56.9 2.2 46 242-287 1-46 (2740)
82 KOG3864 Uncharacterized conser 89.9 0.032 7E-07 45.5 -2.6 81 25-106 102-185 (221)
83 PF04478 Mid2: Mid2 like cell 89.1 0.26 5.7E-06 38.2 1.9 14 331-344 48-61 (154)
84 PF13516 LRR_6: Leucine Rich r 88.4 0.12 2.7E-06 26.3 -0.2 11 214-224 4-14 (24)
85 KOG3864 Uncharacterized conser 88.1 0.12 2.6E-06 42.3 -0.6 83 190-272 103-188 (221)
86 PF08374 Protocadherin: Protoc 87.1 0.6 1.3E-05 38.4 2.9 36 328-363 34-69 (221)
87 KOG4341 F-box protein containi 86.9 0.46 1E-05 43.4 2.3 132 2-133 296-438 (483)
88 PF02439 Adeno_E3_CR2: Adenovi 86.4 0.4 8.7E-06 27.4 1.1 20 334-353 5-24 (38)
89 KOG4308 LRR-containing protein 84.1 0.011 2.4E-07 56.0 -9.7 156 2-157 117-302 (478)
90 PF01102 Glycophorin_A: Glycop 84.0 0.51 1.1E-05 35.5 1.1 25 333-357 65-89 (122)
91 PTZ00382 Variant-specific surf 83.2 0.54 1.2E-05 33.8 0.9 28 333-360 67-94 (96)
92 smart00365 LRR_SD22 Leucine-ri 82.7 1.2 2.5E-05 23.4 1.8 14 24-37 2-15 (26)
93 PF15102 TMEM154: TMEM154 prot 82.4 1.4 3E-05 34.1 2.8 14 347-360 74-87 (146)
94 smart00364 LRR_BAC Leucine-ric 74.2 2.3 5E-05 22.2 1.3 16 73-89 3-18 (26)
95 smart00368 LRR_RI Leucine rich 72.3 3.3 7.1E-05 22.0 1.7 14 24-37 2-15 (28)
96 PF08114 PMP1_2: ATPase proteo 71.3 4.8 0.0001 23.3 2.2 14 348-361 23-36 (43)
97 PF07204 Orthoreo_P10: Orthore 70.9 3.2 7E-05 29.1 1.8 30 330-359 40-69 (98)
98 PRK00523 hypothetical protein; 70.1 3 6.5E-05 27.8 1.5 31 334-364 5-35 (72)
99 KOG4242 Predicted myosin-I-bin 69.2 21 0.00046 33.6 7.1 59 2-60 216-280 (553)
100 KOG3763 mRNA export factor TAP 67.3 2.4 5.3E-05 40.3 0.9 65 70-135 216-284 (585)
101 PRK01844 hypothetical protein; 67.2 3.9 8.5E-05 27.3 1.6 29 337-365 7-35 (72)
102 KOG3763 mRNA export factor TAP 63.2 4.3 9.4E-05 38.7 1.7 37 210-246 216-254 (585)
103 PF12273 RCR: Chitin synthesis 62.8 4.2 9.1E-05 31.2 1.3 16 349-364 14-29 (130)
104 PF01299 Lamp: Lysosome-associ 61.5 4.9 0.00011 36.0 1.7 28 333-360 271-300 (306)
105 PF10725 DUF2517: Protein of u 55.5 15 0.00033 23.4 2.6 34 342-375 17-50 (63)
106 PF04478 Mid2: Mid2 like cell 55.1 19 0.00042 28.2 3.7 23 327-349 48-70 (154)
107 PF02480 Herpes_gE: Alphaherpe 51.4 4.9 0.00011 37.9 0.0 14 351-364 373-386 (439)
108 PF05808 Podoplanin: Podoplani 50.6 5.2 0.00011 31.5 0.0 30 333-362 130-160 (162)
109 PF01034 Syndecan: Syndecan do 50.1 5.1 0.00011 26.1 -0.1 29 335-363 12-41 (64)
110 smart00367 LRR_CC Leucine-rich 49.1 13 0.00027 19.1 1.4 11 24-34 2-12 (26)
111 PF11770 GAPT: GRB2-binding ad 46.6 4.6 0.0001 31.2 -0.8 6 363-368 40-45 (158)
112 PF04971 Lysis_S: Lysis protei 46.5 17 0.00037 24.0 1.9 25 331-355 32-56 (68)
113 PF05454 DAG1: Dystroglycan (D 46.1 6.7 0.00015 34.5 0.0 13 353-365 167-179 (290)
114 TIGR01478 STEVOR variant surfa 45.6 9.1 0.0002 33.2 0.7 7 350-356 276-282 (295)
115 PF06697 DUF1191: Protein of u 45.0 76 0.0016 27.8 6.1 34 336-369 218-251 (278)
116 COG3763 Uncharacterized protei 43.3 18 0.00039 24.0 1.6 17 348-364 18-34 (71)
117 PF14610 DUF4448: Protein of u 43.2 15 0.00032 30.3 1.6 20 331-350 156-175 (189)
118 PF02009 Rifin_STEVOR: Rifin/s 42.2 20 0.00043 31.9 2.3 32 335-366 256-287 (299)
119 PF05568 ASFV_J13L: African sw 41.5 33 0.00072 26.3 3.0 29 336-364 33-61 (189)
120 PF15069 FAM163: FAM163 family 40.6 31 0.00066 26.7 2.8 23 334-356 7-29 (143)
121 PF05545 FixQ: Cbb3-type cytoc 40.5 41 0.00088 20.6 2.9 9 352-360 27-35 (49)
122 PF12191 stn_TNFRSF12A: Tumour 40.4 10 0.00023 28.4 0.2 11 351-361 97-107 (129)
123 PF12606 RELT: Tumour necrosis 39.9 11 0.00024 23.3 0.3 20 350-369 17-36 (50)
124 PF15145 DUF4577: Domain of un 39.4 74 0.0016 23.3 4.3 13 333-345 63-75 (128)
125 PF15176 LRR19-TM: Leucine-ric 39.0 37 0.00081 24.4 2.8 7 330-336 15-21 (102)
126 PF03302 VSP: Giardia variant- 38.3 18 0.00038 33.8 1.5 28 333-360 368-395 (397)
127 PF05283 MGC-24: Multi-glycosy 38.1 44 0.00096 27.3 3.5 27 332-358 158-184 (186)
128 PF15069 FAM163: FAM163 family 37.4 23 0.00051 27.3 1.7 30 335-364 5-34 (143)
129 TIGR00864 PCC polycystin catio 37.3 19 0.00041 41.6 1.7 32 30-61 1-32 (2740)
130 PF13908 Shisa: Wnt and FGF in 36.6 35 0.00075 27.8 2.8 8 335-342 82-89 (179)
131 PF15176 LRR19-TM: Leucine-ric 35.4 46 0.001 23.9 2.8 28 331-358 13-40 (102)
132 PHA03099 epidermal growth fact 34.8 28 0.00062 26.2 1.8 23 337-359 105-127 (139)
133 PF15050 SCIMP: SCIMP protein 34.7 16 0.00035 27.0 0.4 7 350-356 26-32 (133)
134 PF14584 DUF4446: Protein of u 33.9 29 0.00063 27.4 1.8 14 354-367 24-37 (151)
135 PF06809 NPDC1: Neural prolife 33.7 1.2E+02 0.0025 27.1 5.5 25 334-358 200-225 (341)
136 PF12877 DUF3827: Domain of un 32.3 41 0.00089 33.0 2.8 24 329-352 267-290 (684)
137 PHA03265 envelope glycoprotein 31.3 41 0.00089 30.2 2.5 20 342-361 358-377 (402)
138 PF15050 SCIMP: SCIMP protein 31.0 39 0.00085 25.1 1.9 25 336-360 9-33 (133)
139 PF13908 Shisa: Wnt and FGF in 30.9 37 0.00081 27.6 2.1 19 333-351 76-94 (179)
140 PF06365 CD34_antigen: CD34/Po 30.7 61 0.0013 26.9 3.2 7 333-339 101-107 (202)
141 PF08374 Protocadherin: Protoc 30.4 25 0.00054 29.3 0.9 24 333-356 35-58 (221)
142 PTZ00382 Variant-specific surf 28.4 1.2E+02 0.0026 21.8 4.1 6 333-338 71-76 (96)
143 PHA03281 envelope glycoprotein 28.2 53 0.0011 31.5 2.7 29 332-360 554-584 (642)
144 PF02480 Herpes_gE: Alphaherpe 28.0 20 0.00043 34.0 0.0 26 342-367 361-386 (439)
145 PF05393 Hum_adeno_E3A: Human 27.6 33 0.00072 23.9 1.0 7 355-361 55-61 (94)
146 PF01102 Glycophorin_A: Glycop 27.6 34 0.00074 25.8 1.2 12 347-358 82-93 (122)
147 COG1470 Predicted membrane pro 27.1 35 0.00075 32.1 1.4 27 335-361 487-513 (513)
148 TIGR03141 cytochro_ccmD heme e 27.1 92 0.002 18.7 2.8 21 349-369 20-40 (45)
149 PF11980 DUF3481: Domain of un 26.8 43 0.00093 23.1 1.4 10 350-359 35-44 (87)
150 PLN03155 cytochrome c oxidase 26.5 1.8E+02 0.004 18.7 4.1 34 337-370 20-53 (63)
151 PHA03271 envelope glycoprotein 26.3 61 0.0013 30.0 2.7 7 299-305 421-427 (490)
152 PF15345 TMEM51: Transmembrane 25.8 1.8E+02 0.0039 24.7 5.2 8 349-356 75-82 (233)
153 KOG1219 Uncharacterized conser 25.6 1.6E+02 0.0035 34.4 6.0 16 264-279 3916-3931(4289)
154 PHA02662 ORF131 putative membr 24.9 27 0.00059 29.1 0.3 22 343-364 196-217 (226)
155 PF04995 CcmD: Heme exporter p 24.8 1.3E+02 0.0027 18.2 3.1 29 341-369 11-39 (46)
156 PF05454 DAG1: Dystroglycan (D 24.8 24 0.00053 31.1 0.0 22 341-362 158-179 (290)
157 TIGR03154 sulfolob_CbsA cytoch 23.7 83 0.0018 28.3 3.0 23 334-356 442-464 (465)
158 PF13260 DUF4051: Protein of u 23.2 1.2E+02 0.0025 18.5 2.6 18 346-363 13-30 (54)
159 PF03672 UPF0154: Uncharacteri 22.9 90 0.002 20.5 2.3 12 352-363 15-26 (64)
160 PRK11677 hypothetical protein; 22.7 61 0.0013 25.0 1.8 16 335-350 4-19 (134)
161 PF15012 DUF4519: Domain of un 22.5 56 0.0012 20.7 1.3 20 335-354 31-50 (56)
162 PF12768 Rax2: Cortical protei 22.0 79 0.0017 28.0 2.6 17 333-349 230-246 (281)
163 PF06716 DUF1201: Protein of u 20.3 79 0.0017 19.0 1.5 19 337-355 11-29 (54)
164 PHA02955 hypothetical protein; 20.2 35 0.00076 28.4 0.1 13 351-363 196-208 (213)
165 KOG4242 Predicted myosin-I-bin 20.1 99 0.0022 29.4 2.9 109 24-134 165-281 (553)
166 PF10883 DUF2681: Protein of u 20.0 89 0.0019 22.0 2.0 14 343-356 11-24 (87)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-35 Score=306.29 Aligned_cols=298 Identities=33% Similarity=0.513 Sum_probs=200.3
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|+++
T Consensus 285 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECC
Confidence 46778888888877777777778888888888887777777777777778888887777777777777777777777777
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|++.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..++.|+.++++.+.....
T Consensus 365 ~n~l~~~~p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 365 TNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred CCeeEeeCChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence 7777666666554 455566666665555555555555555555555555555555555555555555555544433221
Q ss_pred CCCCCC-----------------------ccccceEEEE-----eccccchhhhcccccEEEccCCcccccCchhhhccc
Q 046668 161 PSVSTG-----------------------KYVEDALLVL-----KGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLR 212 (381)
Q Consensus 161 ~~~~~~-----------------------~~~~~~~~~~-----~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~ 212 (381)
...... .........+ .+..+..+..++.|+.|++++|++.+.+|..+..++
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence 110000 0001111111 222333455677778888888888777777777888
Q ss_pred cCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccC
Q 046668 213 ALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTG 292 (381)
Q Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~ 292 (381)
+|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|+.+++++|++.|.+|..+.+..+....+.+
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~ 603 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAG 603 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcC
Confidence 88888888888887788878888888888888888887778777777888888888888888888777777777777777
Q ss_pred C-CCCCCC
Q 046668 293 N-RLCGSP 299 (381)
Q Consensus 293 n-~l~~~~ 299 (381)
| .+||.+
T Consensus 604 n~~lc~~~ 611 (968)
T PLN00113 604 NIDLCGGD 611 (968)
T ss_pred CccccCCc
Confidence 7 566643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2e-34 Score=297.22 Aligned_cols=297 Identities=32% Similarity=0.510 Sum_probs=252.4
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|+.|+++
T Consensus 261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340 (968)
T ss_pred CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.++++.+.....
T Consensus 341 ~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 341 SNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred CCCCcCcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 9999988998887 799999999999999999999999999999999999999999999999999999999988865432
Q ss_pred CCCCCCccccceEEEEec-----ccc-----------------------chhhhcccccEEEccCCcccccCchhhhccc
Q 046668 161 PSVSTGKYVEDALLVLKG-----KAV-----------------------EYNTILKLMRLIDLSKNKFSGEIPSEIMNLR 212 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-----~~~-----------------------~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~ 212 (381)
...............+.+ ... ......+.|+.|++++|++.+..|..+..++
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 499 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS 499 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhh
Confidence 111111111111111110 000 0111235688888888888888888899999
Q ss_pred cCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCccc
Q 046668 213 ALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFT 291 (381)
Q Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~ 291 (381)
+|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|.. ..+..++.++++
T Consensus 500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence 9999999999999999999999999999999999999999999999999999999999999988864 557778888899
Q ss_pred CCCCCCC
Q 046668 292 GNRLCGS 298 (381)
Q Consensus 292 ~n~l~~~ 298 (381)
+|.+.+.
T Consensus 580 ~N~l~~~ 586 (968)
T PLN00113 580 HNHLHGS 586 (968)
T ss_pred CCcceee
Confidence 9977664
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-31 Score=241.21 Aligned_cols=272 Identities=24% Similarity=0.218 Sum_probs=154.4
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
|+.|+|.+|.|+.+-.+.+.-++.|++||||.|.|+.+...+|..-.++++|+|++|.|+..-.+.|.++.+|..|.|+.
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 55666666666655555566666666666666666655555555555666666666666655556666666666666666
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP 161 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 161 (381)
|.++ .+|...|..+++|+.|+|..|.+.-+-.-.|.++++|+.|.+..|.+...-..+|-.+.+++.+++..+......
T Consensus 207 Nrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 207 NRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred Cccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 6665 566655545666666666666665333445566666666666666655444555555556555555555443322
Q ss_pred CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 241 (381)
. ..+..++.|+.|++++|.|..+.++.+...++|++|+|+.|+++...+.+|..+.+|++|
T Consensus 286 ~-------------------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 286 E-------------------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred c-------------------ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 2 122234556666666666655555555556666666666666665555555555556666
Q ss_pred eccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC----CCCCccCCCcccCC
Q 046668 242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFDPSSFTGN 293 (381)
Q Consensus 242 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~----~~l~~l~~~~~~~n 293 (381)
+|++|+++..-...|..+.+|+.||+++|.+++.+.+. ..++.|+.+.+.||
T Consensus 347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 66666555444445555555555555555555444332 12344444444444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=5.4e-31 Score=237.20 Aligned_cols=276 Identities=22% Similarity=0.224 Sum_probs=137.0
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
|+.||||.|.|+.+--.+|..-.++++|+|++|+|+....+.|.++.+|.+|.|+.|+++...+.+|+++++|+.|||..
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 45555555555543334454445555555555555555555555555555555555555544445555555555555555
Q ss_pred CcCcc-----------------------cCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcC
Q 046668 82 NEFVG-----------------------NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138 (381)
Q Consensus 82 n~l~~-----------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 138 (381)
|.+.- .+.++.|..+.++++|+|..|+++.+-...+-+++.|+.|++++|.+....+
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 55430 3334444445555555555555554444455555555555555555555555
Q ss_pred cccccccccccccccCCccccCCCCCCCccccceEEEEeccccch-----hhhcccccEEEccCCcccccCc---hhhhc
Q 046668 139 KCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEY-----NTILKLMRLIDLSKNKFSGEIP---SEIMN 210 (381)
Q Consensus 139 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~~L~L~~n~~~~~~~---~~~~~ 210 (381)
+....+++|+.|+++.+....++.-....+.......+..+.... +..+++|+.|||.+|.++..+. ..|.+
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 555555555555555555544433222222222222222222211 1224445555555555443322 22444
Q ss_pred cccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCC
Q 046668 211 LRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL 278 (381)
Q Consensus 211 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 278 (381)
++.|+.|.+.+|++......+|.+++.|++|||.+|.|..+-|++|..+ .|+.|-+..-.+.|+|..
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL 457 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence 5555555555555553333445555555555555555554455555555 455555555555555544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=5.5e-28 Score=219.79 Aligned_cols=247 Identities=25% Similarity=0.400 Sum_probs=157.2
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCc-ccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFT-GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
|++|++++|++. .+-+.+..++.|+.+++.+|++. .-+|..+..+..|++|||++|+++ ..|..+..-+++-+|+||
T Consensus 57 LEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS 134 (1255)
T KOG0444|consen 57 LEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLS 134 (1255)
T ss_pred hhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcc
Confidence 455556666555 33444555566666666666553 124444555666667777777666 566666666666677777
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|++. +||..++.++..|-.|||++|++. .+|+....+.+|++|+|++|.+...--..+..+++|+.|.++...-+
T Consensus 135 ~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-- 210 (1255)
T KOG0444|consen 135 YNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-- 210 (1255)
T ss_pred cCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch--
Confidence 77665 666666666666667777777666 55666666667777777776655333333444555555555544322
Q ss_pred CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCE
Q 046668 161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 240 (381)
..+.+..+..+.+|..+|++.|++. ..|+.+..+++|+.|+||+|.++ .+....+...+|++
T Consensus 211 ----------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 211 ----------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLET 272 (1255)
T ss_pred ----------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhh
Confidence 1123334455677777777777776 67777777777777777777777 55555555667777
Q ss_pred EeccCCcCcccCchhhhCCCCCCeeeCCCCcce
Q 046668 241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273 (381)
Q Consensus 241 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~ 273 (381)
|++++|+++ .+|+.++.++.|+.|.+.+|+++
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 777777777 67777777777777777777664
No 6
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=8.4e-28 Score=207.35 Aligned_cols=296 Identities=22% Similarity=0.190 Sum_probs=199.3
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccC-CccceeCCccccCCCCCCEEeCcC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRK-NSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
..++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+.|++|.++.+|.+|-+.+ |+|+....++|.+|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 3566777777766666677777777777777777777777777777766665555 677766666777777777777777
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCC------------CCcCccccccccccc
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS------------GSIPKCISNISSMVT 149 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~ 149 (381)
|++. .++...+..+++|..|.+.+|.+..+....|..+..++++.+..|.+. ...|..++.......
T Consensus 150 n~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 150 NHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 7765 566666666777777777777776444446677777777777766621 111111221111111
Q ss_pred ccccCCccccCCCCCCCccccceEEE------Eecc-ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCc
Q 046668 150 ANFSIGTDVQYPSVSTGKYVEDALLV------LKGK-AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCN 222 (381)
Q Consensus 150 l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n 222 (381)
..+......+...-....+....... ++.. ...-++.+++|+.|+|++|.++++-+.+|.+...+++|.|..|
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 11110000000000000000000000 1111 1223567999999999999999999999999999999999999
Q ss_pred ccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCCCCCC
Q 046668 223 SFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSP 299 (381)
Q Consensus 223 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l~~~~ 299 (381)
++.......|.++.+|+.|+|.+|+|+...|..|..+.+|.+|++-.|+|.|.|.....-.|++.-...+|.-|..|
T Consensus 309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p 385 (498)
T KOG4237|consen 309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSP 385 (498)
T ss_pred hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCC
Confidence 99977778899999999999999999988899999999999999999999999887665667777667777666654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=3.5e-27 Score=214.63 Aligned_cols=271 Identities=26% Similarity=0.411 Sum_probs=194.8
Q ss_pred ccEEEcCCCcccc-cCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 2 IRILKLGENHFSG-EIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 2 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
|+.+++.+|+++. -+|+.+.++..|++||||+|++. ..|..+..-+++-.|+|++|+|..+...-|-++.-|-.||||
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence 4556666666542 45666667777777777777776 667677667777777777777764444556677777777777
Q ss_pred CCcCcccCChhHHhcCCCCcEEEccccccc-------------------------ccCCcCccCCCCCCEEeccCCcCCC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFR-------------------------GVLPNQLCGLTSLHVLDLADNHLSG 135 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~n~l~~ 135 (381)
+|++. .+|..+. .+..|++|+|++|.+. ..+|..+..+.+|..+|++.|.+.
T Consensus 159 ~NrLe-~LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp- 235 (1255)
T KOG0444|consen 159 NNRLE-MLPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP- 235 (1255)
T ss_pred cchhh-hcCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence 77775 6666665 5667777777766543 234566666777777777777776
Q ss_pred CcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCc
Q 046668 136 SIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALV 215 (381)
Q Consensus 136 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 215 (381)
.+|+++-.+.+|+.|+++.+...++.. ......+|++|+++.|+++ .+|..+..+++|+
T Consensus 236 ~vPecly~l~~LrrLNLS~N~iteL~~--------------------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKITELNM--------------------TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred cchHHHhhhhhhheeccCcCceeeeec--------------------cHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 677777777777777777766543221 2234677888999999888 7888888899999
Q ss_pred EEeCCCcccc-cccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCC
Q 046668 216 SLDLSCNSFT-GRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGN 293 (381)
Q Consensus 216 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n 293 (381)
.|.+.+|+++ .-+|..++.+.+|+.+..++|.+. .+|+.++.++.|+.|.+++|++. ++|.. ..++.++.+++..|
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence 9988888876 247888888888888888888887 78888888889999999999887 44443 56777888888777
Q ss_pred -CCCCCC
Q 046668 294 -RLCGSP 299 (381)
Q Consensus 294 -~l~~~~ 299 (381)
.+.-+|
T Consensus 373 pnLVMPP 379 (1255)
T KOG0444|consen 373 PNLVMPP 379 (1255)
T ss_pred cCccCCC
Confidence 454433
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1.5e-26 Score=200.13 Aligned_cols=262 Identities=29% Similarity=0.407 Sum_probs=205.8
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
++.+++++|.++ .+.+.+.++..|.+|++.+|.+. ..|.+++.+..++.++.++|+++ .+|++++.+.+|+.++.+.
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 456778888877 45566778888888888888887 67778888888888888888887 7888888888888888888
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP 161 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 161 (381)
|.+. .+|++++ .+..|+.++..+|.++ ..|+.+..+.+|..+++.+|.+. ..|...-+++.|++++...+....
T Consensus 124 n~~~-el~~~i~-~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~t-- 197 (565)
T KOG0472|consen 124 NELK-ELPDSIG-RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLET-- 197 (565)
T ss_pred ccee-ecCchHH-HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhc--
Confidence 8887 7777777 6778888888888887 66777777888888888888887 444444447777777665554332
Q ss_pred CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhh-hccCCCCE
Q 046668 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSI-GALESILS 240 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~ 240 (381)
.+..++.+.+|+.|++..|++. ..| .|.++..|.+|.++.|.+. .+|.+. .+++++..
T Consensus 198 ------------------lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 198 ------------------LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV 256 (565)
T ss_pred ------------------CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence 2334455788888999999987 566 7889999999999999998 666554 48899999
Q ss_pred EeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCC
Q 046668 241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRL 295 (381)
Q Consensus 241 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l 295 (381)
||+..|++. ..|+.++-+.+|+.||+++|.+++..+..+.+ ++..+.+.||++
T Consensus 257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred eeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 999999998 78888888999999999999998877777777 788888888865
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=2.7e-25 Score=192.38 Aligned_cols=284 Identities=24% Similarity=0.327 Sum_probs=162.0
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccc-cCCCCCCEEeCc
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASF-QNCTKLVMLDIG 80 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~ 80 (381)
|++||...|-++ .+|..++++..|..|+|.+|++. .+| .|.++..|++|.+..|.+. .+|.+. .++++|.+||+.
T Consensus 185 L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 185 LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence 455555555555 56666666666666666666665 455 5666666666666666665 444333 366677777777
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccc-------------------
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI------------------- 141 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------------- 141 (381)
+|++. .+|++++ .+.+|++||+++|.++ .+|..++++ +|+.|-+.+|.+.. +-..+
T Consensus 261 dNklk-e~Pde~c-lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 261 DNKLK-EVPDEIC-LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred ccccc-cCchHHH-HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccC
Confidence 77776 6666666 5666777777777766 556666666 66777776666421 00000
Q ss_pred -----------------------ccccccccccccCCccccCCCCCCCccccc--eEEEEecc-----------------
Q 046668 142 -----------------------SNISSMVTANFSIGTDVQYPSVSTGKYVED--ALLVLKGK----------------- 179 (381)
Q Consensus 142 -----------------------~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------------- 179 (381)
..+-+.+.+.++....+.+|..-......+ ....+..+
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 001111112221111111111000000000 00011111
Q ss_pred -----------ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcC
Q 046668 180 -----------AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQL 248 (381)
Q Consensus 180 -----------~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 248 (381)
....+..+++|..|++++|-+. .+|..++.+..|+.|+++.|+|. .+|..+..+..++.+-.++|++
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQI 493 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccc
Confidence 1122334666777777777665 66677777777777777777776 6666555555555555556666
Q ss_pred cccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCCC
Q 046668 249 YGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLC 296 (381)
Q Consensus 249 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l~ 296 (381)
....++.+..+.+|..||+.+|.+.-..|..+.+++++.+.+.||++.
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 655555577788888888888888755555577778888888877554
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=2.3e-23 Score=180.11 Aligned_cols=270 Identities=20% Similarity=0.187 Sum_probs=205.4
Q ss_pred CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC-CcCcccCChhHHhcCCCCcEEE
Q 046668 25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE-NEFVGNVPTWIGIRFSSLMILN 103 (381)
Q Consensus 25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~ 103 (381)
.-..++|..|.|+.+.+.+|..+++|+.|||++|.|+.+-|++|.++++|..|-+.+ |+++ .+|...+.++.+|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 567899999999999999999999999999999999999999999999998876655 8898 89999998999999999
Q ss_pred cccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCC---C---------Cccccc
Q 046668 104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVS---T---------GKYVED 171 (381)
Q Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~---~---------~~~~~~ 171 (381)
+.-|++..+..+.|..+++|..|.+.+|.+...--..|..+.+++.+.+..+..+..-... . ..+...
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 9999999888899999999999999999998444458888999988887766643221110 0 000000
Q ss_pred eEEEE---ecccc---chhhhcccccEEEccCCcccccCch-hhhccccCcEEeCCCcccccccChhhhccCCCCEEecc
Q 046668 172 ALLVL---KGKAV---EYNTILKLMRLIDLSKNKFSGEIPS-EIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFS 244 (381)
Q Consensus 172 ~~~~~---~~~~~---~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 244 (381)
....+ ..... ......+.+..-..+.+...++-|. .|.++++|++|+|++|++++.-+.+|.++..++.|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 00000 00000 0001112222222233444445554 59999999999999999999999999999999999999
Q ss_pred CCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCC
Q 046668 245 ANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRL 295 (381)
Q Consensus 245 ~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l 295 (381)
.|++.......|..+..|+.|++.+|++++.-|.. ..+..+..+.+-+|++
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 99998777778999999999999999999877754 3344566666777733
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=1.5e-19 Score=187.77 Aligned_cols=279 Identities=20% Similarity=0.259 Sum_probs=147.6
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
|+.|.+.++.++ .+|..| ...+|+.|++++|.+. .++..+..+++|++|+|+++.....+|. +..+++|++|++++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 455555555554 445444 3456666666666655 4555555666666666665543334442 55566666666666
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP 161 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 161 (381)
|.....+|..+. .+++|+.|++++|..-..+|..+ ++++|++|++++|.....+|.. .++|+.++++.+....+|
T Consensus 667 c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 667 CSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFP 741 (1153)
T ss_pred CCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccc
Confidence 554445665554 56666666666543333444433 4566666666665443333332 234455555555444433
Q ss_pred CCCCCccccceEEEEec------------cccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccC
Q 046668 162 SVSTGKYVEDALLVLKG------------KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIP 229 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 229 (381)
..... .......+.. ........+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|
T Consensus 742 ~~~~l--~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 742 SNLRL--ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccc--cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 32110 0000000000 000011124567777777776665667777777777777777664332444
Q ss_pred hhhhcc---------------------CCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCC-CCCCCccCC
Q 046668 230 NSIGAL---------------------ESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL-STQLQSFDP 287 (381)
Q Consensus 230 ~~~~~l---------------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~l~~l~~ 287 (381)
... .+ ++|+.|++++|.++ .+|..+..+++|+.|++++|+-...+|. ...++.++.
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897 (1153)
T ss_pred CCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence 332 23 34556666666665 5666777778888888877533233333 245566666
Q ss_pred CcccCC
Q 046668 288 SSFTGN 293 (381)
Q Consensus 288 ~~~~~n 293 (381)
+.+.++
T Consensus 898 L~l~~C 903 (1153)
T PLN03210 898 VDFSDC 903 (1153)
T ss_pred eecCCC
Confidence 666666
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=1.6e-19 Score=187.56 Aligned_cols=262 Identities=19% Similarity=0.214 Sum_probs=180.0
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|+.|++++|++. .++..+..+++|+.|+|+++...+.+| .++.+++|++|++++|.....+|..+.++++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 5789999999988 678888899999999999886444666 47889999999999987666899999999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|...+.+|..+ .+++|+.|++++|......|.. .++|++|++++|.+. .+|..+ .+++|+.|.+..+.....
T Consensus 690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 690 RCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhc
Confidence 987666888766 6899999999998755455543 467899999999876 556543 355555555443211110
Q ss_pred C-------CCCCCccccceEEEEe-----ccccchhhhcccccEEEccCCcccccCchhh--------------------
Q 046668 161 P-------SVSTGKYVEDALLVLK-----GKAVEYNTILKLMRLIDLSKNKFSGEIPSEI-------------------- 208 (381)
Q Consensus 161 ~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~-------------------- 208 (381)
. ..............+. ...+..+..+++|+.|++++|...+.+|...
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence 0 0000000000011111 1122233445555555555543222222211
Q ss_pred hccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcc
Q 046668 209 MNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNL 272 (381)
Q Consensus 209 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l 272 (381)
....+|+.|+|++|.++ .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.-
T Consensus 843 ~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 843 DISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred ccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 11246778888888887 7888899999999999999654446777788899999999999853
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=7.8e-20 Score=178.68 Aligned_cols=222 Identities=25% Similarity=0.428 Sum_probs=145.8
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
...|++++++++ .+|..+. ++|+.|+|++|.++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|++++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 467899999988 5676553 58999999999998 5565554 58999999999998 5666553 4799999999
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP 161 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 161 (381)
|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. ++|+.++++.+....+|
T Consensus 251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 251 NRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALP 320 (754)
T ss_pred CccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCC
Confidence 9997 7887764 57999999999998 5666553 58999999999998 4565443 46777777777655443
Q ss_pred CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 241 (381)
... +++|+.|++++|.++. +|..+ .++|+.|++++|+++ .+|..+. ++|++|
T Consensus 321 ~~l----------------------~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~L 372 (754)
T PRK15370 321 ETL----------------------PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTL 372 (754)
T ss_pred ccc----------------------cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEE
Confidence 211 2335555555555543 33322 145555555555555 3444332 455555
Q ss_pred eccCCcCcccCchhhhCCCCCCeeeCCCCcce
Q 046668 242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273 (381)
Q Consensus 242 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~ 273 (381)
++++|.++ .+|..+. ..|+.|++++|++.
T Consensus 373 dLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 373 DVSRNALT-NLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred ECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence 55555555 2333322 13555555555554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=9e-20 Score=177.32 Aligned_cols=241 Identities=24% Similarity=0.339 Sum_probs=132.9
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 82 (381)
..|+++.+.++ .+|..+. ++|+.|++++|.++ .+|.. .++|++|++++|.++ .+|.. .++|+.|++++|
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence 46788888887 5677664 37888888888887 34532 467888888888777 34432 345666666666
Q ss_pred cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccc-----------------cc
Q 046668 83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISN-----------------IS 145 (381)
Q Consensus 83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----------------l~ 145 (381)
.+. .+|.. ..+|+.|++++|.++ .+|. ..++|+.|++++|.+.+ +|..... ..
T Consensus 273 ~L~-~Lp~l----p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~ 342 (788)
T PRK15387 273 PLT-HLPAL----PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPS 342 (788)
T ss_pred chh-hhhhc----hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCCcccccccccccCcccccccccc
Confidence 654 34331 234555555555554 2232 12445555555555542 2221110 12
Q ss_pred ccccccccCCccccCCCCCCCccccceEEEEeccccchh-hhcccccEEEccCCcccccCchhhhccccCcEEeCCCccc
Q 046668 146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN-TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSF 224 (381)
Q Consensus 146 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l 224 (381)
+|+.|+++.+....+|..... .....+..+.+..+ ..+..|+.|++++|++.+ +|.. .++|+.|++++|.+
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp~~----L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~L 414 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLPSE----LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRL 414 (788)
T ss_pred ccceEecCCCccCCCCCCCcc----cceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcC
Confidence 455555555555544432110 00001111111000 113456777777777763 3322 25677777777777
Q ss_pred ccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCC
Q 046668 225 TGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP 277 (381)
Q Consensus 225 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 277 (381)
+ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus 415 s-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 415 T-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred C-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 6 45543 245667777777776 567667777777777777777776544
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=3.8e-22 Score=189.23 Aligned_cols=245 Identities=25% Similarity=0.349 Sum_probs=153.2
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
|+++|+++|+++ .+|+.+..+.+|+.++..+|.++ .+|..+....+|+.|....|.+. .+|....+++.|++|||..
T Consensus 243 l~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 243 LQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehh
Confidence 566666777666 44566666677777777777665 55666666666777777777666 5555666677777777777
Q ss_pred CcCcccCChhHHhcCCC-CcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 82 NEFVGNVPTWIGIRFSS-LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
|.+. .+|..++..... |+.|..+.|++....-..=...+.|+.|.+.+|.++...-..+.+..+|+.|+++++....+
T Consensus 320 N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 320 NNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred cccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 7765 566555433332 56666666665522211222345567777777777766666666666666666666655544
Q ss_pred CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCE
Q 046668 161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 240 (381)
|.... ..++.|+.|+|++|+++ .+|.....++.|++|...+|++. ..| .+..+++|+.
T Consensus 399 pas~~-------------------~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 399 PASKL-------------------RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred CHHHH-------------------hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 43221 23555777777777776 56667777777777777777776 666 5667777777
Q ss_pred EeccCCcCcccCchhhhCCCCCCeeeCCCCcc
Q 046668 241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNL 272 (381)
Q Consensus 241 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l 272 (381)
+|++.|.++...-..-...++|++||+++|..
T Consensus 457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred EecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 77777777643322222336777777777763
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=1.9e-21 Score=184.61 Aligned_cols=261 Identities=28% Similarity=0.373 Sum_probs=199.9
Q ss_pred CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEE
Q 046668 24 LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILN 103 (381)
Q Consensus 24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 103 (381)
++|+.|+.++|.++...+.. .-.+|+++++++|.++ .+|+.+..+.+|+.++..+|.+. .+|..++ ...+|+.|.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~ 293 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLS 293 (1081)
T ss_pred cchheeeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHH
Confidence 44555666666655222221 1258899999999998 56788999999999999999996 8888887 688999999
Q ss_pred cccccccccCCcCccCCCCCCEEeccCCcCCCCcCccc-ccccc-cccccccCCccccCCCCCCCccc-----cceEEEE
Q 046668 104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI-SNISS-MVTANFSIGTDVQYPSVSTGKYV-----EDALLVL 176 (381)
Q Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~-L~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 176 (381)
+..|.+. -+|....+++.|++|+|..|++. ..|+.+ ..... ++.++.+.+....+|........ ......+
T Consensus 294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 9999988 56667788999999999999997 555543 33332 56666666666555543332211 1223344
Q ss_pred eccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhh
Q 046668 177 KGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSI 256 (381)
Q Consensus 177 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 256 (381)
....+..+..+.+|+.|+|++|++...+...+.+++.|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~ 448 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL 448 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence 5666777788999999999999998555567899999999999999999 88899999999999999999998 777 68
Q ss_pred hCCCCCCeeeCCCCcceec-CCCCCCCCccCCCcccCCC
Q 046668 257 SSLTFLSRLKLSNNNLSGK-IPLSTQLQSFDPSSFTGNR 294 (381)
Q Consensus 257 ~~l~~L~~L~l~~N~l~~~-~~~~~~l~~l~~~~~~~n~ 294 (381)
..++.|+.+|++.|+++.. +|..--.++|+.++++||.
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 8999999999999999753 3333223789999999993
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=3.5e-19 Score=173.29 Aligned_cols=241 Identities=23% Similarity=0.296 Sum_probs=155.5
Q ss_pred CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEE
Q 046668 24 LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILN 103 (381)
Q Consensus 24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 103 (381)
.+-..|+++++.++ .+|..+. .+|+.|++.+|.++ .+|. .+++|++|++++|+++ .+|. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccC----cccccceee
Confidence 45778999999998 6787776 48999999999998 4564 3689999999999998 6775 246899999
Q ss_pred cccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccch
Q 046668 104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEY 183 (381)
Q Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (381)
+++|.++ .+|.. ..+|+.|++++|+++ .+|.. .++|+.|+++.+....+|..... .....+..+.+..
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~----L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPALPSE----LCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCCccc----ccccccccCcccc
Confidence 9999998 44543 257899999999998 55653 46788999988877766553211 1111122222211
Q ss_pred hh-hcccccEEEccCCcccccCchhhhc-----------------cccCcEEeCCCcccccccChhhhccCCCCEEeccC
Q 046668 184 NT-ILKLMRLIDLSKNKFSGEIPSEIMN-----------------LRALVSLDLSCNSFTGRIPNSIGALESILSIDFSA 245 (381)
Q Consensus 184 ~~-~~~~L~~L~L~~n~~~~~~~~~~~~-----------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 245 (381)
+. .+..|+.|++++|+++. +|..... ..+|+.|++++|.++ .+|.. .++|+.|++++
T Consensus 337 LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~ 411 (788)
T PRK15387 337 LPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSG 411 (788)
T ss_pred ccccccccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccC
Confidence 11 23468888888888874 3321111 123455555555554 23322 24555666666
Q ss_pred CcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCCCCC
Q 046668 246 NQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLCGS 298 (381)
Q Consensus 246 n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l~~~ 298 (381)
|++++ +|... .+|+.|++++|+++ .+|.. ..++.+..+++++|.+++.
T Consensus 412 N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 412 NRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 66552 34322 24566666666665 44432 3456677777888877765
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1e-19 Score=177.91 Aligned_cols=226 Identities=23% Similarity=0.413 Sum_probs=177.2
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|+.|++++|+++ .+|..+. .+|++|++++|.++ .+|..+. .+|++|++++|.+. .+|..+. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 4789999999999 5676553 58999999999998 5676654 58999999999998 6676664 589999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|++. .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.++ .+|..+. ++|+.|+++.+....+
T Consensus 271 ~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~L 340 (754)
T PRK15370 271 HNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTSL 340 (754)
T ss_pred CCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCccccC
Confidence 99998 7887653 589999999999984 554442 47999999999998 4565443 5788888887765544
Q ss_pred CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCE
Q 046668 161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 240 (381)
|.. .+++|+.|++++|+++ .+|..+ .+.|+.|++++|.++ .+|..+. ..|+.
T Consensus 341 P~~----------------------l~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~ 392 (754)
T PRK15370 341 PAS----------------------LPPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQI 392 (754)
T ss_pred Chh----------------------hcCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHH
Confidence 321 1357999999999998 566555 368999999999999 6776654 47999
Q ss_pred EeccCCcCcccCchhh----hCCCCCCeeeCCCCccee
Q 046668 241 IDFSANQLYGEIPQSI----SSLTFLSRLKLSNNNLSG 274 (381)
Q Consensus 241 L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~N~l~~ 274 (381)
|++++|+++ .+|..+ ...+.+..+++.+|+++.
T Consensus 393 LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 393 MQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 999999998 555543 445789999999999873
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.78 E-value=5.1e-21 Score=147.64 Aligned_cols=182 Identities=26% Similarity=0.463 Sum_probs=144.9
Q ss_pred CCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCC
Q 046668 45 GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH 124 (381)
Q Consensus 45 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (381)
.++.+.+.|.|++|+++ .+|..+..+.+|+.|++.+|++. .+|..+. .+++|++|+++-|++. ..|..|+.+|.|+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhh
Confidence 35778888888999888 67777888889999999999887 7888877 7889999999888888 8889999999999
Q ss_pred EEeccCCcCCC-CcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCccccc
Q 046668 125 VLDLADNHLSG-SIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE 203 (381)
Q Consensus 125 ~L~L~~n~l~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 203 (381)
.||+++|++.. .+|..|.. +..|+.|++++|.+. .
T Consensus 106 vldltynnl~e~~lpgnff~-------------------------------------------m~tlralyl~dndfe-~ 141 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFY-------------------------------------------MTTLRALYLGDNDFE-I 141 (264)
T ss_pred hhhccccccccccCCcchhH-------------------------------------------HHHHHHHHhcCCCcc-c
Confidence 99999988863 35554444 444677778888887 7
Q ss_pred CchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCC---CCCeeeCCCCcceecC
Q 046668 204 IPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLT---FLSRLKLSNNNLSGKI 276 (381)
Q Consensus 204 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~---~L~~L~l~~N~l~~~~ 276 (381)
+|...+.+++|+.|.+..|.+- .+|..++.+.+|++|.+.+|+++ .+|..+..+. +=+.+.+.+|+|...+
T Consensus 142 lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 7888899999999999999888 88889999999999999999998 6666665543 2345666777775444
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=1.7e-19 Score=163.25 Aligned_cols=255 Identities=20% Similarity=0.229 Sum_probs=168.9
Q ss_pred EEEcCCCcccc-cCCccccCCCCCCEEECcCCcCcc----cCCccCCCCCCCCEEEccCCccc------eeCCccccCCC
Q 046668 4 ILKLGENHFSG-EIPDCWMNWLDLLVLNLGNNNFTG----NIPISLGMLSSLQSLNLRKNSLS------GQIPASFQNCT 72 (381)
Q Consensus 4 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~ 72 (381)
.|+|.++.+++ .....+..+.+|+.|+++++.++. .++..+...+++++|+++++.+. ..++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 57888888873 445556778889999999998853 24555667788999999998776 22345677889
Q ss_pred CCCEEeCcCCcCcccCChhHHhcCCC---CcEEEcccccccc----cCCcCccCC-CCCCEEeccCCcCCCC----cCcc
Q 046668 73 KLVMLDIGENEFVGNVPTWIGIRFSS---LMILNLRSNKFRG----VLPNQLCGL-TSLHVLDLADNHLSGS----IPKC 140 (381)
Q Consensus 73 ~L~~L~L~~n~l~~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~ 140 (381)
+|++|++++|.+.+..+..+. .+.+ |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 999999999988754444443 4444 9999999998873 222345556 8899999999998743 2334
Q ss_pred cccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccC----chhhhccccCcE
Q 046668 141 ISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI----PSEIMNLRALVS 216 (381)
Q Consensus 141 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~ 216 (381)
+..++.|+.++++.+...... .......+...+.|+.|++++|.+.+.. +..+..+++|++
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~---------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAG---------------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred HHhCCCcCEEECcCCCCchHH---------------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 555667777777665432100 0000111223457888888888776432 234556777888
Q ss_pred EeCCCcccccccChhhhc-----cCCCCEEeccCCcCcc----cCchhhhCCCCCCeeeCCCCccee
Q 046668 217 LDLSCNSFTGRIPNSIGA-----LESILSIDFSANQLYG----EIPQSISSLTFLSRLKLSNNNLSG 274 (381)
Q Consensus 217 L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~N~l~~ 274 (381)
|++++|.+++.....+.. .+.|++|++++|.++. .+...+..+++|+.+++++|+++.
T Consensus 226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 888888777533333221 3678888888887752 233445566778888888887764
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=1.3e-19 Score=164.05 Aligned_cols=255 Identities=20% Similarity=0.274 Sum_probs=184.0
Q ss_pred ccEEEcCCCcccc----cCCccccCCCCCCEEECcCCcCcc------cCCccCCCCCCCCEEEccCCccceeCCccccCC
Q 046668 2 IRILKLGENHFSG----EIPDCWMNWLDLLVLNLGNNNFTG------NIPISLGMLSSLQSLNLRKNSLSGQIPASFQNC 71 (381)
Q Consensus 2 L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 71 (381)
|+.|+++++.++. .++..+...+++++++++++.+.+ .++..+..+++|++|++++|.+.+..+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 7899999998854 245556678889999999988762 234567778999999999999876666666655
Q ss_pred CC---CCEEeCcCCcCccc----CChhHHhcC-CCCcEEEccccccccc----CCcCccCCCCCCEEeccCCcCCCC---
Q 046668 72 TK---LVMLDIGENEFVGN----VPTWIGIRF-SSLMILNLRSNKFRGV----LPNQLCGLTSLHVLDLADNHLSGS--- 136 (381)
Q Consensus 72 ~~---L~~L~L~~n~l~~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~--- 136 (381)
.+ |++|++++|.+.+. +...+. .+ ++|+.|++++|.+++. .+..+..+++|++|++++|.+.+.
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 55 99999999988631 222333 45 8999999999998832 334567778999999999998743
Q ss_pred -cCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhh-c----
Q 046668 137 -IPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM-N---- 210 (381)
Q Consensus 137 -~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~---- 210 (381)
++..+...++|+.++++.+....... ......+..+++|+.|++++|.+++.....+. .
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~---------------~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~ 248 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGA---------------SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSP 248 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHH---------------HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhcc
Confidence 33445566789999888775431100 00112234467899999999998864333332 2
Q ss_pred cccCcEEeCCCccccc----ccChhhhccCCCCEEeccCCcCccc----CchhhhCC-CCCCeeeCCCCcc
Q 046668 211 LRALVSLDLSCNSFTG----RIPNSIGALESILSIDFSANQLYGE----IPQSISSL-TFLSRLKLSNNNL 272 (381)
Q Consensus 211 l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~l~~N~l 272 (381)
.+.|++|++++|.+++ .+...+..+++|+++++++|.+... ....+... +.|+.+++.+|+|
T Consensus 249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 3799999999999873 2334556678999999999999844 44445555 6899999998875
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=5.3e-20 Score=142.05 Aligned_cols=181 Identities=27% Similarity=0.488 Sum_probs=147.6
Q ss_pred CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcE
Q 046668 22 NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI 101 (381)
Q Consensus 22 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 101 (381)
++.+.+.|.|++|+++ .+|..++.+.+|+.|++.+|++. .+|.+++.+++|+.|+++-|++. .+|.+++ .++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhhh
Confidence 6677888899999998 67778899999999999999998 78889999999999999999987 8899988 7999999
Q ss_pred EEccccccc-ccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccc
Q 046668 102 LNLRSNKFR-GVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180 (381)
Q Consensus 102 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (381)
|||+.|.+. ..+|..|-.+..|+.|++++|.+. .+|..+++++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt----------------------------------- 150 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLT----------------------------------- 150 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhc-----------------------------------
Confidence 999998886 467888888899999999999987 7777776644
Q ss_pred cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccC---CCCEEeccCCcCcccC
Q 046668 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE---SILSIDFSANQLYGEI 252 (381)
Q Consensus 181 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~L~~n~l~~~~ 252 (381)
+|+.|.+..|++. ..|..++.+..|++|.+.+|+++ .+|..++.+. +-+...+.+|.....+
T Consensus 151 --------~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 151 --------NLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred --------ceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 4677777788776 78889999999999999999998 7776665543 2234455566554333
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=9.5e-16 Score=149.36 Aligned_cols=116 Identities=39% Similarity=0.638 Sum_probs=102.5
Q ss_pred cccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCC
Q 046668 189 LMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLS 268 (381)
Q Consensus 189 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 268 (381)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceecCCCC--CCCCccCCCcccCC-CCCCCCCCCCC
Q 046668 269 NNNLSGKIPLS--TQLQSFDPSSFTGN-RLCGSPLPNNC 304 (381)
Q Consensus 269 ~N~l~~~~~~~--~~l~~l~~~~~~~n-~l~~~~~~~~c 304 (381)
+|+++|.+|.. ..+..+..+++.+| .+|+.|....|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 99999999864 22234556678888 68887654555
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.45 E-value=1.6e-15 Score=137.74 Aligned_cols=127 Identities=27% Similarity=0.439 Sum_probs=98.4
Q ss_pred CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcE
Q 046668 22 NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI 101 (381)
Q Consensus 22 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 101 (381)
.+..-...||+.|++. .+|..+..+..|+.+.|..|.+. .+|.++.++..|.++||+.|++. .+|..++ . --|+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~-lpLkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-D-LPLKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-c-Cccee
Confidence 3455566788888887 77888888888888888888887 78888888888888888888887 7888876 3 35888
Q ss_pred EEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCC
Q 046668 102 LNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIG 155 (381)
Q Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~ 155 (381)
|.+++|+++ .+|..++.++.|..||.+.|.+. .+|..++.+.+|+.+.+..+
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhh
Confidence 888888888 67777778888888888888887 66666666666555544433
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.41 E-value=7.9e-15 Score=133.26 Aligned_cols=195 Identities=25% Similarity=0.419 Sum_probs=134.8
Q ss_pred CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCE
Q 046668 46 MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHV 125 (381)
Q Consensus 46 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 125 (381)
.+..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++ .+..|.+|+|+.|.++ .+|..+..++ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 3455566788888877 77777777778888888888877 7777777 7788888888888887 6676677665 788
Q ss_pred EeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCc
Q 046668 126 LDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP 205 (381)
Q Consensus 126 L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 205 (381)
|.+++|+++ .+|..++....|..++++.|.....| ..+..+..|+.|.+..|++. .+|
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slp--------------------sql~~l~slr~l~vrRn~l~-~lp 205 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLP--------------------SQLGYLTSLRDLNVRRNHLE-DLP 205 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhhhch--------------------HHhhhHHHHHHHHHhhhhhh-hCC
Confidence 888888887 67777777777777777766654332 23344566777777777776 455
Q ss_pred hhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhC---CCCCCeeeCCCC
Q 046668 206 SEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISS---LTFLSRLKLSNN 270 (381)
Q Consensus 206 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~l~~N 270 (381)
+.+..+ .|..||+|+|++. .+|-.|.+|++|++|.|.+|.++ ..|..++. .+-.++|+..-+
T Consensus 206 ~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 206 EELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 555533 4777777777777 77777777777777777777777 34444432 223355555555
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.40 E-value=4.4e-13 Score=124.95 Aligned_cols=106 Identities=30% Similarity=0.451 Sum_probs=62.8
Q ss_pred EEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCC-CCCEEeCcCCcCcccCChhHHhcCCCCcEEEccc
Q 046668 28 VLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCT-KLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRS 106 (381)
Q Consensus 28 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 106 (381)
.++++.+.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+. .+++|+.|++++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCC
Confidence 4566666553 22223344566677777777666 4444455553 6777777777665 5554444 567777777777
Q ss_pred ccccccCCcCccCCCCCCEEeccCCcCCCCcCc
Q 046668 107 NKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPK 139 (381)
Q Consensus 107 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 139 (381)
|.+. .++.....+++|+.|++++|++. .+|.
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~ 203 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPP 203 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCch
Confidence 7766 33443335667777777777766 4444
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.35 E-value=1.2e-12 Score=121.96 Aligned_cols=196 Identities=35% Similarity=0.508 Sum_probs=115.6
Q ss_pred EEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCC-CCcEEEcccccccccCCcCccCCCCCCEEeccC
Q 046668 52 SLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFS-SLMILNLRSNKFRGVLPNQLCGLTSLHVLDLAD 130 (381)
Q Consensus 52 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 130 (381)
.+++..|.+. .....+..++.++.|++.+|.+. .++.... ... +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 4666666553 22333445566777777777766 5555554 342 6777777777766 4444566667777777777
Q ss_pred CcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhc
Q 046668 131 NHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMN 210 (381)
Q Consensus 131 n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 210 (381)
|++. .+|......+.|+.++++.+....+|... ..+..|+.+.+++|.+. ..+..+..
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~--------------------~~~~~L~~l~~~~N~~~-~~~~~~~~ 230 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI--------------------ELLSALEELDLSNNSII-ELLSSLSN 230 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccccCchhh--------------------hhhhhhhhhhhcCCcce-ecchhhhh
Confidence 7766 45554445666666666666554443321 12344666666666433 34445666
Q ss_pred cccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecC
Q 046668 211 LRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKI 276 (381)
Q Consensus 211 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 276 (381)
+..+..+.+++|++. ..+..++.++.++.|++++|.++.. +. +..+.+++.|++++|.+....
T Consensus 231 ~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 231 LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccc
Confidence 666666666666665 3355566666677777777776633 22 556666777777776665443
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=3.8e-12 Score=124.29 Aligned_cols=109 Identities=37% Similarity=0.539 Sum_probs=90.5
Q ss_pred CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEc
Q 046668 25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL 104 (381)
Q Consensus 25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 104 (381)
.++.|+|++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+. .+++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEEC
Confidence 377888888888888888888888888888888888888888888888888888888888888888777 7888888888
Q ss_pred ccccccccCCcCccCC-CCCCEEeccCCcCC
Q 046668 105 RSNKFRGVLPNQLCGL-TSLHVLDLADNHLS 134 (381)
Q Consensus 105 ~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~ 134 (381)
++|.+++.+|..+..+ .++..+++.+|...
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccc
Confidence 8888888888777653 46678888887644
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.9e-13 Score=118.12 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=57.3
Q ss_pred cccccEEEccCCcccccCc-hhhhccccCcEEeCCCcccccc-cChh-----hhccCCCCEEeccCCcCcc-cCchhhhC
Q 046668 187 LKLMRLIDLSKNKFSGEIP-SEIMNLRALVSLDLSCNSFTGR-IPNS-----IGALESILSIDFSANQLYG-EIPQSISS 258 (381)
Q Consensus 187 ~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~-----~~~l~~L~~L~L~~n~l~~-~~~~~l~~ 258 (381)
+..|+.|+|++|++..... ...+.++.|..|+++.+.+... .|+. ....++|+.|+++.|++.. ..-..+..
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~ 324 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT 324 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhc
Confidence 5568888888887763321 3466788888888888877642 2222 2456788888888888741 11234556
Q ss_pred CCCCCeeeCCCCccee
Q 046668 259 LTFLSRLKLSNNNLSG 274 (381)
Q Consensus 259 l~~L~~L~l~~N~l~~ 274 (381)
+++|+.|.+..|+++.
T Consensus 325 l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhhcccccccc
Confidence 6777788888887764
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.1e-13 Score=119.35 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=17.6
Q ss_pred ccccCcEEeCCCcccccccC--hhhhccCCCCEEeccCCcCc
Q 046668 210 NLRALVSLDLSCNSFTGRIP--NSIGALESILSIDFSANQLY 249 (381)
Q Consensus 210 ~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~ 249 (381)
.+++|+.|+++.|++. ..+ ..+..+++|++|.+..|.+.
T Consensus 299 ~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 3455555555555553 111 12333444555555555443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.29 E-value=2.7e-12 Score=103.42 Aligned_cols=128 Identities=24% Similarity=0.339 Sum_probs=52.0
Q ss_pred ccCCCCCCEEECcCCcCcccCCccCC-CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCC
Q 046668 20 WMNWLDLLVLNLGNNNFTGNIPISLG-MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSS 98 (381)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 98 (381)
+.+...+++|+|++|.|+.+. .++ .+.+|+.|++++|.++. +. .+..+++|++|++++|.+. .++..+...+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred ccccccccccccccccccccc--chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 345667899999999998442 454 57899999999999984 33 5788999999999999998 666555446899
Q ss_pred CcEEEcccccccccC-CcCccCCCCCCEEeccCCcCCCCcCc----cccccccccccccc
Q 046668 99 LMILNLRSNKFRGVL-PNQLCGLTSLHVLDLADNHLSGSIPK----CISNISSMVTANFS 153 (381)
Q Consensus 99 L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~l~~~ 153 (381)
|++|++++|.+.... -..+..+++|+.|++.+|+++.. +. .+..+++|+.|+-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 999999999987432 24567789999999999998743 32 35678888888653
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=6e-13 Score=114.41 Aligned_cols=239 Identities=18% Similarity=0.214 Sum_probs=156.9
Q ss_pred ccCCCCCCEEECcCCcCcc----cCCccCCCCCCCCEEEccCC---ccceeCCc-------cccCCCCCCEEeCcCCcCc
Q 046668 20 WMNWLDLLVLNLGNNNFTG----NIPISLGMLSSLQSLNLRKN---SLSGQIPA-------SFQNCTKLVMLDIGENEFV 85 (381)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n---~l~~~~~~-------~~~~l~~L~~L~L~~n~l~ 85 (381)
...+..++.++|++|.+.. .+...+.+.++|++.++++- ++...+|+ ++.++++|+++|||+|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4467789999999998862 23445667788888888763 22223343 4557789999999999875
Q ss_pred ccCChh---HHhcCCCCcEEEcccccccccC-------------CcCccCCCCCCEEeccCCcCCCC----cCccccccc
Q 046668 86 GNVPTW---IGIRFSSLMILNLRSNKFRGVL-------------PNQLCGLTSLHVLDLADNHLSGS----IPKCISNIS 145 (381)
Q Consensus 86 ~~~~~~---~~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~ 145 (381)
...+.. +...+..|++|+|.+|.+...- ......-++|+++..++|++... +...|...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 433322 2235788999999999876211 12234457899999999998743 223456667
Q ss_pred ccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCccccc----CchhhhccccCcEEeCCC
Q 046668 146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE----IPSEIMNLRALVSLDLSC 221 (381)
Q Consensus 146 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~Ls~ 221 (381)
.|+.+.+.++++.+-.. ......+...++|+.|||.+|-++.. +...+..+++|++|+++.
T Consensus 186 ~leevr~~qN~I~~eG~---------------~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGV---------------TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred ccceEEEecccccCchh---------------HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 77777666665432110 01122345578888888888877643 334566778888888888
Q ss_pred cccccccChhh-----hccCCCCEEeccCCcCccc----CchhhhCCCCCCeeeCCCCcce
Q 046668 222 NSFTGRIPNSI-----GALESILSIDFSANQLYGE----IPQSISSLTFLSRLKLSNNNLS 273 (381)
Q Consensus 222 n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~N~l~ 273 (381)
|.+......++ ...|.|+.|.+.+|.++.. +...+...+.|+.|++++|.+.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 88876544433 2357888888888887632 2223445678888888888873
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=1.1e-11 Score=99.83 Aligned_cols=124 Identities=28% Similarity=0.293 Sum_probs=52.6
Q ss_pred CccEEEcCCCcccccCCcccc-CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccc-cCCCCCCEEe
Q 046668 1 GIRILKLGENHFSGEIPDCWM-NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASF-QNCTKLVMLD 78 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 78 (381)
++++|+|.+|.|+.+ +.++ .+.+|+.|+|++|.|+.. . .+..++.|++|++++|.++. +++.+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 368899999999843 3455 588999999999999854 2 57889999999999999984 44445 4799999999
Q ss_pred CcCCcCcccCC-hhHHhcCCCCcEEEcccccccccCC---cCccCCCCCCEEeccC
Q 046668 79 IGENEFVGNVP-TWIGIRFSSLMILNLRSNKFRGVLP---NQLCGLTSLHVLDLAD 130 (381)
Q Consensus 79 L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~ 130 (381)
+++|++...-. ..+. .+++|+.|++.+|.+..... ..+..+|+|+.||-..
T Consensus 95 L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNKISDLNELEPLS-SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS---SCCCCGGGG-G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCcCCChHHhHHHH-cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 99999863222 2333 68999999999999984321 2467789999998654
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.24 E-value=1.9e-12 Score=109.34 Aligned_cols=203 Identities=21% Similarity=0.225 Sum_probs=123.6
Q ss_pred ccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC-cCcccCChhHHhcCCC
Q 046668 20 WMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN-EFVGNVPTWIGIRFSS 98 (381)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~ 98 (381)
+.-+++|+++.++++.-..+ .+-...-+.|+++......++ ..| .+-.+..+.-...+.- ...|..-..+. ....
T Consensus 210 l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~-~~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~d-TWq~ 285 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQ-DVP-SLLPETILADPSGSEPSTSNGSALVSAD-TWQE 285 (490)
T ss_pred hHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccc-ccc-cccchhhhcCccCCCCCccCCceEEecc-hHhh
Confidence 34466777777777754422 222222366777776655443 111 1111222221111111 11121111221 2346
Q ss_pred CcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEec
Q 046668 99 LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG 178 (381)
Q Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (381)
|+++||+.|.++ .+.+...-+|.++.|++++|.+...
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v------------------------------------------ 322 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV------------------------------------------ 322 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceeee------------------------------------------
Confidence 888888888888 4556667778888888888887621
Q ss_pred cccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccC-chhhh
Q 046668 179 KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEI-PQSIS 257 (381)
Q Consensus 179 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~ 257 (381)
..+..+++|+.|||++|.++ ....+-..+.+.++|.|++|.+... ..+..+-+|..||+++|+|.... -..++
T Consensus 323 ---~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG 396 (490)
T KOG1259|consen 323 ---QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIG 396 (490)
T ss_pred ---hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccc
Confidence 11223566888888888876 5556667788889999999988622 33566778888999999886321 24578
Q ss_pred CCCCCCeeeCCCCcceec
Q 046668 258 SLTFLSRLKLSNNNLSGK 275 (381)
Q Consensus 258 ~l~~L~~L~l~~N~l~~~ 275 (381)
++|.|+.+.+.+|++.+.
T Consensus 397 ~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 397 NLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cccHHHHHhhcCCCcccc
Confidence 888899999999988753
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=2.8e-11 Score=121.04 Aligned_cols=267 Identities=20% Similarity=0.190 Sum_probs=148.1
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCc--CcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNN--FTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+...+-+|.+. .++... .+++|++|-+..|. +.....+.|..++.|+.|||++|.--+.+|+.++++.+||+|+++
T Consensus 526 rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 526 RRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred eEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 44555555554 333333 34567777777775 443444456677888888888776556778888888888888888
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCC--CCcCcccccccccccccccCCcc-
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS--GSIPKCISNISSMVTANFSIGTD- 157 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~l~~~~~~~- 157 (381)
++.+. .+|.++. ++.+|.+|++..+.-...++.....+++|++|.+...... ...-..+..+++|+.+.......
T Consensus 604 ~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~ 681 (889)
T KOG4658|consen 604 DTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL 681 (889)
T ss_pred CCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH
Confidence 88776 7777777 6778888887776655455666666778888777665421 11112233344444333322221
Q ss_pred --ccCCCCCCC-ccccceE--EEEeccccchhhhcccccEEEccCCcccccCchhhh-----c-cccCcEEeCCCccccc
Q 046668 158 --VQYPSVSTG-KYVEDAL--LVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM-----N-LRALVSLDLSCNSFTG 226 (381)
Q Consensus 158 --~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-----~-l~~L~~L~Ls~n~l~~ 226 (381)
..+...... ....... .............+.+|+.|.+.++.+......... . ++++..+...++...
T Consensus 682 ~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~- 760 (889)
T KOG4658|consen 682 LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML- 760 (889)
T ss_pred hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-
Confidence 000000000 0000000 001111233345577788888888877533222211 1 334444444444333
Q ss_pred ccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668 227 RIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274 (381)
Q Consensus 227 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 274 (381)
..+.+....++|+.|.+.++.....+.+....+..+..+-+..+.+.+
T Consensus 761 r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 761 RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 333444456889999999888766665556666666665555555544
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.14 E-value=4.6e-11 Score=79.30 Aligned_cols=60 Identities=35% Similarity=0.507 Sum_probs=39.7
Q ss_pred CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCc
Q 046668 24 LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE 83 (381)
Q Consensus 24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 83 (381)
++|++|++++|+++.+.++.|.++++|++|++++|.++...+++|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356666666666665555666666666666666666666666666666666666666664
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=1.8e-11 Score=103.54 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=86.2
Q ss_pred ccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCC
Q 046668 18 DCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFS 97 (381)
Q Consensus 18 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 97 (381)
..+...+.|+++|||+|.|+ .+-+++.-++.++.|++++|.+.. +. .+..+++|+.|||++|.+. .+..+-- .+-
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~-KLG 352 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHL-KLG 352 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHh-hhc
Confidence 33445566777777777776 444555566777777777777762 22 2667777777777777765 3433332 566
Q ss_pred CCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCC-cCcccccccccccccccCCccccCC
Q 046668 98 SLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGS-IPKCISNISSMVTANFSIGTDVQYP 161 (381)
Q Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~l~~~~~~~~~~~ 161 (381)
++++|.|+.|.+... ..+.++-+|..||+++|++... --..+++++.|+.+.+-.+.....+
T Consensus 353 NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 777777777776633 3456666777777777777521 1245667777777766666555443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.07 E-value=1.4e-10 Score=76.98 Aligned_cols=60 Identities=33% Similarity=0.485 Sum_probs=56.3
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCcc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 60 (381)
+|++|++++|+++.+.++.|.++++|++|++++|.++.+.+++|.++++|++|++++|.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 589999999999977778899999999999999999989999999999999999999975
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.02 E-value=4.1e-11 Score=112.04 Aligned_cols=129 Identities=26% Similarity=0.292 Sum_probs=80.8
Q ss_pred CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcE
Q 046668 22 NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI 101 (381)
Q Consensus 22 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 101 (381)
.+..++.+.+..|.+.. .-..+..+++|+.|++.+|.+.. +...+..+++|++|++++|.+. .+...- .+..|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~l~--~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEGLS--TLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccchh--hccchhh
Confidence 45566666677776663 23345667778888888887763 3333667778888888888776 333221 4566778
Q ss_pred EEcccccccccCCcCccCCCCCCEEeccCCcCCCCcC-cccccccccccccccCCccc
Q 046668 102 LNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP-KCISNISSMVTANFSIGTDV 158 (381)
Q Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~~~~~~~~ 158 (381)
|++++|.+... ..+..++.|+.+++++|++...-+ . ...+.+++.+.+..+...
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 88888877743 345557778888888887763333 1 355555555555555443
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=7.6e-10 Score=110.87 Aligned_cols=126 Identities=26% Similarity=0.387 Sum_probs=95.1
Q ss_pred ccEEEcCCCc--ccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668 2 IRILKLGENH--FSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI 79 (381)
Q Consensus 2 L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 79 (381)
|++|-+..|. +....++.|..++.|++|||++|.=-+.+|..++.|-+|++|+++++.++ .+|..+.++..|.+|++
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNL 625 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecc
Confidence 5677777775 55444555888999999999988755689999999999999999999998 89999999999999999
Q ss_pred cCCcCcccCChhHHhcCCCCcEEEccccccc--ccCCcCccCCCCCCEEecc
Q 046668 80 GENEFVGNVPTWIGIRFSSLMILNLRSNKFR--GVLPNQLCGLTSLHVLDLA 129 (381)
Q Consensus 80 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~ 129 (381)
..+.....+| .+...+++|++|.+...... ...-..+..+.+|+.+...
T Consensus 626 ~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 626 EVTGRLESIP-GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccccccccc-chhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 9987664554 44436999999998665422 1122334445555554443
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.97 E-value=3.4e-11 Score=103.80 Aligned_cols=233 Identities=17% Similarity=0.192 Sum_probs=161.6
Q ss_pred CccEEEcCCCcccc----cCCccccCCCCCCEEECcCCc---CcccCC-------ccCCCCCCCCEEEccCCccceeCCc
Q 046668 1 GIRILKLGENHFSG----EIPDCWMNWLDLLVLNLGNNN---FTGNIP-------ISLGMLSSLQSLNLRKNSLSGQIPA 66 (381)
Q Consensus 1 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~---l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~ 66 (381)
+++.++|++|.+.. .+...+.+.++|+..++++-- ....+| .++-.++.|++|+||+|-+...-+.
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 36789999998754 333456677899999987642 222333 3345678999999999987644444
Q ss_pred c----ccCCCCCCEEeCcCCcCcccCChhH-H------------hcCCCCcEEEccccccccc----CCcCccCCCCCCE
Q 046668 67 S----FQNCTKLVMLDIGENEFVGNVPTWI-G------------IRFSSLMILNLRSNKFRGV----LPNQLCGLTSLHV 125 (381)
Q Consensus 67 ~----~~~l~~L~~L~L~~n~l~~~~~~~~-~------------~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~ 125 (381)
. +..+..|++|.|.+|.+. ...... + ..-++|+++...+|++... +...|...+.|+.
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 3 356889999999999874 221111 1 1346799999999988632 2345677789999
Q ss_pred EeccCCcCCCC----cCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCccc
Q 046668 126 LDLADNHLSGS----IPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFS 201 (381)
Q Consensus 126 L~L~~n~l~~~----~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~ 201 (381)
+.+..|.+... +..++..+++|+.|++..+....-.+. ..-..+..+++|+.|++++|.+.
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~---------------~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV---------------ALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH---------------HHHHHhcccchheeecccccccc
Confidence 99999988632 235678899999999887765421110 01122344778999999999987
Q ss_pred ccCchhh-----hccccCcEEeCCCcccccc----cChhhhccCCCCEEeccCCcCc
Q 046668 202 GEIPSEI-----MNLRALVSLDLSCNSFTGR----IPNSIGALESILSIDFSANQLY 249 (381)
Q Consensus 202 ~~~~~~~-----~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 249 (381)
..-..+| ...+.|+.|.+++|.++.. +.......+.|..|+|++|.+.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 5544433 3578999999999998843 2233456799999999999993
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=9.7e-11 Score=109.54 Aligned_cols=241 Identities=23% Similarity=0.253 Sum_probs=153.0
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
++.+.+..|.+.. .-..+..+++|+.|++.+|.|..+.. .+..+++|++|++++|.|+.+. .+..++.|+.|++++
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheecc
Confidence 4456677777763 33446788999999999999985433 3677899999999999998543 366777899999999
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
|.+. .+.. +. .+..|+.+++++|.+....+ . ...+.+++.+++++|.+... ..+..+..+..+++..+.....
T Consensus 150 N~i~-~~~~-~~-~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 150 NLIS-DISG-LE-SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred Ccch-hccC-Cc-cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceec
Confidence 9987 4443 22 37889999999999885544 2 57788899999999987632 2222333333222222222211
Q ss_pred CCCCCCccccceEEEEeccccchhhhcc--cccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668 161 PSVSTGKYVEDALLVLKGKAVEYNTILK--LMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 238 (381)
... .... +|+.+++++|++. ..+..+..+..+..|++.+|++...- .+...+.+
T Consensus 224 ~~l---------------------~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~ 279 (414)
T KOG0531|consen 224 EGL---------------------NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKL 279 (414)
T ss_pred cCc---------------------ccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchH
Confidence 111 0111 3677778887776 33355667777778888877776321 12334555
Q ss_pred CEEeccCCcCccc---Cchh-hhCCCCCCeeeCCCCcceecC
Q 046668 239 LSIDFSANQLYGE---IPQS-ISSLTFLSRLKLSNNNLSGKI 276 (381)
Q Consensus 239 ~~L~L~~n~l~~~---~~~~-l~~l~~L~~L~l~~N~l~~~~ 276 (381)
..+..+.|.+... .... ....+.++.+.+.+|+.....
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 280 SELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred HHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 6666666665421 1111 345567777777777765433
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.69 E-value=2.3e-10 Score=107.50 Aligned_cols=179 Identities=29% Similarity=0.354 Sum_probs=104.2
Q ss_pred CccccCCCCCCEEECcCCcCcccCCccCCCC-CCCCEEEccCCccc----------eeCCccccCCCCCCEEeCcCCcCc
Q 046668 17 PDCWMNWLDLLVLNLGNNNFTGNIPISLGML-SSLQSLNLRKNSLS----------GQIPASFQNCTKLVMLDIGENEFV 85 (381)
Q Consensus 17 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~L~~n~l~ 85 (381)
|-.+..++.|++|.|.++.+.. . ..+..+ ..|++|... |.+. +.+.+++. ...|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence 3345567777777777777752 1 111111 245555332 2222 11112221 125777777888776
Q ss_pred ccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCC
Q 046668 86 GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVST 165 (381)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 165 (381)
.+...+- -++.|+.|+|+.|+++.. ..+..+++|++|||++|.+. .+|..- +.
T Consensus 178 -~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~----------~~------------ 230 (1096)
T KOG1859|consen 178 -LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLS----------MV------------ 230 (1096)
T ss_pred -hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccc----------hh------------
Confidence 5554444 577888888888888755 36777888888888888876 333210 00
Q ss_pred CccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccC-hhhhccCCCCEEecc
Q 046668 166 GKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIP-NSIGALESILSIDFS 244 (381)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~ 244 (381)
-..|+.|.+.+|.++. -..+.++.+|+.||++.|-+.+... ..+..+..|+.|.|.
T Consensus 231 ---------------------gc~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 231 ---------------------GCKLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred ---------------------hhhheeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence 1126777777777652 1235677777888888877764211 123445667777777
Q ss_pred CCcCc
Q 046668 245 ANQLY 249 (381)
Q Consensus 245 ~n~l~ 249 (381)
+|.+.
T Consensus 288 GNPl~ 292 (1096)
T KOG1859|consen 288 GNPLC 292 (1096)
T ss_pred CCccc
Confidence 77775
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=7.2e-09 Score=87.85 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=70.4
Q ss_pred ccCCCCCCEEECcCCcCcccC-CccCC-CCCCCCEEEccCCccce--eCCccccCCCCCCEEeCcCCcCcccCChhHHhc
Q 046668 20 WMNWLDLLVLNLGNNNFTGNI-PISLG-MLSSLQSLNLRKNSLSG--QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIR 95 (381)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~~~-~~~~~-~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 95 (381)
+...+.++.|.+.++.|...- ...|+ ..+.++++||.+|.|+. .+...+.+||.|++|+++.|++...|...- ..
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p 119 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LP 119 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-cc
Confidence 334445556666666664211 11222 35678888888888762 233445788888888888888764443221 14
Q ss_pred CCCCcEEEccccccccc-CCcCccCCCCCCEEeccCCcC
Q 046668 96 FSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHL 133 (381)
Q Consensus 96 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l 133 (381)
..+|++|.|.+..+... ....+..+|.++.|.++.|.+
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 66788888877776532 234456778888888888744
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.9e-09 Score=90.20 Aligned_cols=180 Identities=19% Similarity=0.169 Sum_probs=96.7
Q ss_pred ccEEEcCCCcccc-cCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-ccee-CCccccCCCCCCEEe
Q 046668 2 IRILKLGENHFSG-EIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-LSGQ-IPASFQNCTKLVMLD 78 (381)
Q Consensus 2 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~ 78 (381)
||+|||+...|+- .+...+..|.+|+.|.|.++.+.+.+...++.-.+|+.|+++.+. ++.. ..--|.+|..|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5666666666552 223335566677777777777766666666666677777776642 2211 111245666677777
Q ss_pred CcCCcCcccCChh-HHhcCCCCcEEEccccccc---ccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccC
Q 046668 79 IGENEFVGNVPTW-IGIRFSSLMILNLRSNKFR---GVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSI 154 (381)
Q Consensus 79 L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~ 154 (381)
++.|.+....... +.+--++|..|+|+++.-. ..+..-...+|+|.+|||++|..-.
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~------------------- 327 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK------------------- 327 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC-------------------
Confidence 7766654222111 1111245666666554311 1111122445666777776654321
Q ss_pred CccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchh---hhccccCcEEeCCCcccc
Q 046668 155 GTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSE---IMNLRALVSLDLSCNSFT 225 (381)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~---~~~l~~L~~L~Ls~n~l~ 225 (381)
......+..++.|++|.++.|.. ++|.. +...|.|.+|+..++--.
T Consensus 328 -----------------------~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 328 -----------------------NDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred -----------------------chHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence 11222333466678888877753 44543 566788888888776433
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.40 E-value=4.2e-08 Score=82.24 Aligned_cols=238 Identities=16% Similarity=0.186 Sum_probs=128.9
Q ss_pred cCCCCCCEEECcCCcCccc----CCccCCCCCCCCEEEccCCcc---ceeC-------CccccCCCCCCEEeCcCCcCcc
Q 046668 21 MNWLDLLVLNLGNNNFTGN----IPISLGMLSSLQSLNLRKNSL---SGQI-------PASFQNCTKLVMLDIGENEFVG 86 (381)
Q Consensus 21 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l---~~~~-------~~~~~~l~~L~~L~L~~n~l~~ 86 (381)
.-+..+..++||+|.|... +...+.+-.+|+..+++.--. ...+ ..++-+||+|+..+||+|-+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3467788888998888633 333455567888887775311 1122 2345688999999999998865
Q ss_pred cCChhHH---hcCCCCcEEEcccccccccCC-------------cCccCCCCCCEEeccCCcCCCCcCcc-----ccccc
Q 046668 87 NVPTWIG---IRFSSLMILNLRSNKFRGVLP-------------NQLCGLTSLHVLDLADNHLSGSIPKC-----ISNIS 145 (381)
Q Consensus 87 ~~~~~~~---~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~ 145 (381)
..|..+. +.-..|++|.+++|.+...-. .....-|.|++.+...|++.. .+.. +..-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhc
Confidence 6664433 234679999999988752211 123445789999999999872 2321 11113
Q ss_pred ccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccC----chhhhccccCcEEeCCC
Q 046668 146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI----PSEIMNLRALVSLDLSC 221 (381)
Q Consensus 146 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~Ls~ 221 (381)
.|+.+.+.++++.+-.. .......+....+|+.|++.+|-++... ...+..++.|++|.+..
T Consensus 186 ~lk~vki~qNgIrpegv--------------~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 186 NLKEVKIQQNGIRPEGV--------------TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred CceeEEeeecCcCcchh--------------HHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 44444444443321000 0001111233555666677666665322 22344555666666666
Q ss_pred cccccccChhh------hccCCCCEEeccCCcCcccC-ch----hh--hCCCCCCeeeCCCCcce
Q 046668 222 NSFTGRIPNSI------GALESILSIDFSANQLYGEI-PQ----SI--SSLTFLSRLKLSNNNLS 273 (381)
Q Consensus 222 n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~-~~----~l--~~l~~L~~L~l~~N~l~ 273 (381)
|.++.....++ ...++|..|-..+|.+.+.+ .. .+ ..+|-|..|.+.+|.+.
T Consensus 252 Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 252 CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 66654333221 12355666666666543211 11 11 23455555556666554
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=3.9e-09 Score=99.45 Aligned_cols=123 Identities=29% Similarity=0.348 Sum_probs=66.9
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCc-cccCCCCCCEEeCcC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPA-SFQNCTKLVMLDIGE 81 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~ 81 (381)
...+.++|.+. .+-.++.-++.|+.|+|++|++++.. .+..|+.|++|||++|.+. .+|. ...++. |+.|.+++
T Consensus 167 ~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 167 ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence 34455556555 34445555666666666666665332 5556666666666666665 3332 223333 66666666
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCcC
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHL 133 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l 133 (381)
|.++ .+- ++- ++.+|+.||++.|-+.+... ..++.+..|+.|.|.+|.+
T Consensus 242 N~l~-tL~-gie-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALT-TLR-GIE-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHH-hhh-hHH-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6654 222 222 46666666666666553211 2234445566666666655
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.34 E-value=2.2e-08 Score=75.17 Aligned_cols=102 Identities=23% Similarity=0.328 Sum_probs=56.6
Q ss_pred EEEcCCCcccccCCccc---cCCCCCCEEECcCCcCcccCCccCC-CCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668 4 ILKLGENHFSGEIPDCW---MNWLDLLVLNLGNNNFTGNIPISLG-MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI 79 (381)
Q Consensus 4 ~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 79 (381)
.+||+.|.+- -++++. .+..+|...+|++|.+. ..|..|. ..+.+++|++++|.++ .+|..+..++.|+.|++
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 3555555543 233332 33445555566666665 3444443 2346666666666666 55666666666666666
Q ss_pred cCCcCcccCChhHHhcCCCCcEEEccccccc
Q 046668 80 GENEFVGNVPTWIGIRFSSLMILNLRSNKFR 110 (381)
Q Consensus 80 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 110 (381)
+.|++. ..|.-++ .+.++..|+..+|.+.
T Consensus 108 ~~N~l~-~~p~vi~-~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIA-PLIKLDMLDSPENARA 136 (177)
T ss_pred ccCccc-cchHHHH-HHHhHHHhcCCCCccc
Confidence 666665 5555555 4556666666555544
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3e-08 Score=84.21 Aligned_cols=179 Identities=18% Similarity=0.155 Sum_probs=118.1
Q ss_pred CCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCc-CCC-CcCcccccccccccc
Q 046668 73 KLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNH-LSG-SIPKCISNISSMVTA 150 (381)
Q Consensus 73 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~l 150 (381)
.|+++||++..++...-..+...|.+|+.|.|.++.+.+.+...+++-.+|+.|+++.+. ++. .....+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588888888877644444555578888888888888887777777777888888888765 221 122346788888888
Q ss_pred cccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCccc--c-cCchhhhccccCcEEeCCCccc-cc
Q 046668 151 NFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFS--G-EIPSEIMNLRALVSLDLSCNSF-TG 226 (381)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~--~-~~~~~~~~l~~L~~L~Ls~n~l-~~ 226 (381)
++++|.....- .. ...-.--+.|+.|+++++.-. . .+..-..++++|.+||||.|.. +.
T Consensus 266 NlsWc~l~~~~-Vt----------------v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 266 NLSWCFLFTEK-VT----------------VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred CchHhhccchh-hh----------------HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 88888654210 00 000011345788888876421 1 1222346789999999998764 32
Q ss_pred ccChhhhccCCCCEEeccCCcCcccCchh---hhCCCCCCeeeCCCC
Q 046668 227 RIPNSIGALESILSIDFSANQLYGEIPQS---ISSLTFLSRLKLSNN 270 (381)
Q Consensus 227 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~l~~N 270 (381)
..-..|-.++.|++|.++.|.. ++|.. +...|+|.+||+.++
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 2233466788999999998874 34443 467788999998875
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.29 E-value=1.7e-06 Score=69.64 Aligned_cols=103 Identities=21% Similarity=0.212 Sum_probs=53.3
Q ss_pred CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcc--cCChhHHhcCCCCcEE
Q 046668 25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG--NVPTWIGIRFSSLMIL 102 (381)
Q Consensus 25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L 102 (381)
+...+||++|.+.. -+.|..++.|.+|.+.+|.|+.+-|.--.-+++|+.|.|.+|.+.. .+.. +. .+++|++|
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La-~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LA-SCPKLEYL 118 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hc-cCCcccee
Confidence 45556666665542 1245556666666666666665544444445556666666665541 1111 11 35566666
Q ss_pred EcccccccccCC---cCccCCCCCCEEeccCC
Q 046668 103 NLRSNKFRGVLP---NQLCGLTSLHVLDLADN 131 (381)
Q Consensus 103 ~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n 131 (381)
.+-+|.+...-. ..+..+|+|++||...-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 666655542211 23455566666665543
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=6.9e-08 Score=72.58 Aligned_cols=107 Identities=29% Similarity=0.424 Sum_probs=84.9
Q ss_pred ccEEEcCCCcccccCCcccc-CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 2 IRILKLGENHFSGEIPDCWM-NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
|+..+|++|.+. ..|..|. .++.+++|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.||..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 567899999998 5676664 5779999999999999 78888999999999999999998 678888889999999999
Q ss_pred CCcCcccCChhHHhcCCCCc-EEEcccccccccCC
Q 046668 81 ENEFVGNVPTWIGIRFSSLM-ILNLRSNKFRGVLP 114 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~ 114 (381)
+|.+. .+|..++ .+.+. ..++.++.+.+.-+
T Consensus 132 ~na~~-eid~dl~--~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 132 ENARA-EIDVDLF--YSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCccc-cCcHHHh--ccccHHHHHhcCCcccccCc
Confidence 99887 7776654 33322 23345555554444
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=7e-07 Score=75.06 Aligned_cols=216 Identities=16% Similarity=0.168 Sum_probs=121.6
Q ss_pred CCCCCCCCEEEccCCccceeCCc----cccCCCCCCEEeCcCCcCc---ccCChhH------HhcCCCCcEEEccccccc
Q 046668 44 LGMLSSLQSLNLRKNSLSGQIPA----SFQNCTKLVMLDIGENEFV---GNVPTWI------GIRFSSLMILNLRSNKFR 110 (381)
Q Consensus 44 ~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~---~~~~~~~------~~~l~~L~~L~L~~n~l~ 110 (381)
+..+..+++++||+|.|...-.. .+.+-.+|+..++++--.. ..+++.+ ..+|++|+..+|++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34478999999999988644333 3455678888888764221 1122211 116899999999999998
Q ss_pred ccCCcC----ccCCCCCCEEeccCCcCCCCcCc----cccccc---------ccccccccCCccccCCCCCCCccccceE
Q 046668 111 GVLPNQ----LCGLTSLHVLDLADNHLSGSIPK----CISNIS---------SMVTANFSIGTDVQYPSVSTGKYVEDAL 173 (381)
Q Consensus 111 ~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~---------~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 173 (381)
...|.. ++.-+.|.+|.+++|.+...-.. ++.++. .|+......+..-..+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs------------ 173 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS------------ 173 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc------------
Confidence 666643 46668899999999987622111 221111 1111111111000000
Q ss_pred EEEeccccchhhhcccccEEEccCCcccccCch-----hhhccccCcEEeCCCcccccccC----hhhhccCCCCEEecc
Q 046668 174 LVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPS-----EIMNLRALVSLDLSCNSFTGRIP----NSIGALESILSIDFS 244 (381)
Q Consensus 174 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-----~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~ 244 (381)
....-..+..-..|+.+.+..|.|...... .+..+.+|+.|||..|.++.... .++...+.|+.|.+.
T Consensus 174 ---~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 174 ---KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred ---HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 000001122235677777777766532111 23456778888888887764322 223344667888888
Q ss_pred CCcCcccCchh----h--hCCCCCCeeeCCCCccee
Q 046668 245 ANQLYGEIPQS----I--SSLTFLSRLKLSNNNLSG 274 (381)
Q Consensus 245 ~n~l~~~~~~~----l--~~l~~L~~L~l~~N~l~~ 274 (381)
.|.++..-... + ...|+|..|...+|...+
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 77765322211 1 234677777777776654
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.16 E-value=8e-07 Score=87.24 Aligned_cols=133 Identities=15% Similarity=0.183 Sum_probs=95.6
Q ss_pred CccEEEcCCCcccc-cCCccccC-CCCCCEEECcCCcCcc-cCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEE
Q 046668 1 GIRILKLGENHFSG-EIPDCWMN-WLDLLVLNLGNNNFTG-NIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVML 77 (381)
Q Consensus 1 ~L~~L~l~~n~l~~-~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 77 (381)
+|++||+++..... .=|..++. +|.|++|.+++-.+.. .......++++|..||++++.++.. ..++++++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 57899998875332 22333444 8999999999877642 2334456789999999999999844 678899999999
Q ss_pred eCcCCcCcc-cCChhHHhcCCCCcEEEcccccccccC------CcCccCCCCCCEEeccCCcCCCC
Q 046668 78 DIGENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGVL------PNQLCGLTSLHVLDLADNHLSGS 136 (381)
Q Consensus 78 ~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~ 136 (381)
.+.+=.+.. ..-..++ .+.+|+.||+|........ -+.-..+|+|+.||.+++.+...
T Consensus 201 ~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 998876652 1124566 7999999999976544211 12334589999999999887643
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=2.3e-06 Score=51.95 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=14.5
Q ss_pred CCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCc
Q 046668 49 SLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85 (381)
Q Consensus 49 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 85 (381)
+|++|++++|.++ .+|..+.+|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.13 E-value=9.5e-06 Score=62.71 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=72.8
Q ss_pred CccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcC
Q 046668 17 PDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRF 96 (381)
Q Consensus 17 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 96 (381)
..+|.++.+|+.+.+.. .+..+...+|.++++|+.+.+.++ +......+|.++++|+.+.+.+ .+. .++...+..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence 45688888999999875 566677888999989999999875 6667778899998899999976 443 5666666568
Q ss_pred CCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccccccc
Q 046668 97 SSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147 (381)
Q Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 147 (381)
++|+.+++..+ +.......|.+. +|+.+.+.. .+......+|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 89999999765 554556778887 889888876 3333445667666554
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=2.9e-06 Score=51.49 Aligned_cols=36 Identities=42% Similarity=0.652 Sum_probs=19.8
Q ss_pred CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccc
Q 046668 25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61 (381)
Q Consensus 25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 61 (381)
+|++|++++|.|+ .+|..+++|++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5566666666665 33434566666666666666555
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=2.8e-06 Score=72.46 Aligned_cols=212 Identities=17% Similarity=0.103 Sum_probs=112.6
Q ss_pred CCCCCEEEccCCccceeCC-ccc-cCCCCCCEEeCcCCcCcc--cCChhHHhcCCCCcEEEcccccccccCCcCccCCCC
Q 046668 47 LSSLQSLNLRKNSLSGQIP-ASF-QNCTKLVMLDIGENEFVG--NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122 (381)
Q Consensus 47 l~~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (381)
+..++-|.+.++.|...-. ..| ..+..++.+||.+|++.. .+ ..+..++|.|++|+|+.|.+...+...-..+.+
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI-~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEI-GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHH-HHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 3445556666665542211 112 345678889999998752 12 223346888999999988887433322145678
Q ss_pred CCEEeccCCcCCCCc-CcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCccc
Q 046668 123 LHVLDLADNHLSGSI-PKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFS 201 (381)
Q Consensus 123 L~~L~L~~n~l~~~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~ 201 (381)
|++|.|.+..+.-.. ......++.++.++++.+...++....... +. .-+.+..|++..|...
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~--------------e~--~s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI--------------ED--WSTEVLTLHQLPCLEQ 186 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc--------------cc--cchhhhhhhcCCcHHH
Confidence 888888888775332 234456667777766655433221110000 00 0011223333332221
Q ss_pred cc--CchhhhccccCcEEeCCCcccccc-cChhhhccCCCCEEeccCCcCccc-CchhhhCCCCCCeeeCCCCcceec
Q 046668 202 GE--IPSEIMNLRALVSLDLSCNSFTGR-IPNSIGALESILSIDFSANQLYGE-IPQSISSLTFLSRLKLSNNNLSGK 275 (381)
Q Consensus 202 ~~--~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~ 275 (381)
.- ....-..++++..+-+..|.+... ....+..++.+.-|+|+.|+|.+- .-+.+..++.|+.|.+++|++...
T Consensus 187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 00 001113456666666666655432 112334456666777777776532 124566677777777777777644
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.99 E-value=1.6e-05 Score=64.09 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=92.6
Q ss_pred CCEEECcCCcCcccCCccCC-CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEc
Q 046668 26 LLVLNLGNNNFTGNIPISLG-MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL 104 (381)
Q Consensus 26 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 104 (381)
=+.++|.+.++..+.. ++ -+.+...+||++|.+. ..+.|..+++|.+|.+++|.++ .+...+..-+++|+.|.|
T Consensus 21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred ccccccccccccchhh--ccccccccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEe
Confidence 5667777776653222 22 2457889999999986 2345788999999999999998 777777767899999999
Q ss_pred ccccccccC-CcCccCCCCCCEEeccCCcCCCCcC---cccccccccccccccCC
Q 046668 105 RSNKFRGVL-PNQLCGLTSLHVLDLADNHLSGSIP---KCISNISSMVTANFSIG 155 (381)
Q Consensus 105 ~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~l~~~~~ 155 (381)
.+|.+.... -..+..+|+|++|.+-+|.++..-- ..+..+++|+.++++.-
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999987321 2346778999999999999873221 24567888888877643
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=6.5e-05 Score=68.49 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=56.9
Q ss_pred ccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCC
Q 046668 20 WMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSL 99 (381)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 99 (381)
+..+++++.|++++|.++ .+| .+. .+|++|.++++.-...+|+.+ .++|++|++++|.....+| .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-VLP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-CCC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------ccc
Confidence 345788889999988877 455 222 368888888754333566544 2578888888873222344 357
Q ss_pred cEEEcccccccccCCcCccCC-CCCCEEeccC
Q 046668 100 MILNLRSNKFRGVLPNQLCGL-TSLHVLDLAD 130 (381)
Q Consensus 100 ~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~ 130 (381)
+.|++..+.... +..+ ++|+.|.+.+
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~ 141 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINS 141 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheeccc
Confidence 777776554331 1222 2566776644
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.90 E-value=3e-05 Score=59.91 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=70.0
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|+.+.+.. .+..+...+|.++++|+.+.+.++ +..+...+|.++.+++++.+.+ .+.......|.++++|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 367788875 566677788999999999999886 7767778899998999999976 5555677889999999999998
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH 124 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (381)
.+ +. .++...+..+ +|+.+.+.+ .+.......|.++++|+
T Consensus 90 ~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 90 SN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 76 54 6666666566 999999876 44445567777777664
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=4.9e-05 Score=69.27 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=46.7
Q ss_pred CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccc-cccccCCcCccCCCCCC
Q 046668 46 MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSN-KFRGVLPNQLCGLTSLH 124 (381)
Q Consensus 46 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 124 (381)
.+.++++|++++|.++ .+|. --.+|++|.++++.-...+|..+. ++|++|++++| .+. .+| ++|+
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~-sLP------~sLe 115 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEIS-GLP------ESVR 115 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccc-ccc------cccc
Confidence 3678888888888776 4452 123588888887544346665442 57888888877 443 333 3467
Q ss_pred EEeccCCcC
Q 046668 125 VLDLADNHL 133 (381)
Q Consensus 125 ~L~L~~n~l 133 (381)
+|++..+..
T Consensus 116 ~L~L~~n~~ 124 (426)
T PRK15386 116 SLEIKGSAT 124 (426)
T ss_pred eEEeCCCCC
Confidence 777765543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=3.2e-05 Score=76.20 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=52.9
Q ss_pred CCCCEEeCcCCcCcc-cCChhHHhcCCCCcEEEccccccccc-CCcCccCCCCCCEEeccCCcCCCCcCccccccccccc
Q 046668 72 TKLVMLDIGENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVT 149 (381)
Q Consensus 72 ~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 149 (381)
.+|++||+++..... .=|..++..+|+|+.|.+++-.+... .......+|+|..||+++.+++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 578888888865431 22345665688899988877555421 223446678889999998888733 56677777766
Q ss_pred cccc
Q 046668 150 ANFS 153 (381)
Q Consensus 150 l~~~ 153 (381)
|.+.
T Consensus 200 L~mr 203 (699)
T KOG3665|consen 200 LSMR 203 (699)
T ss_pred Hhcc
Confidence 6543
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.55 E-value=3.6e-05 Score=64.72 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=26.7
Q ss_pred CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCC--ccceeCCccccCCCCCCEEeCcCCcC
Q 046668 22 NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKN--SLSGQIPASFQNCTKLVMLDIGENEF 84 (381)
Q Consensus 22 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l 84 (381)
.+..|+.|++.+..++.. ..|..|++|++|.++.| .+.+.++--...+++|+++++++|++
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 344444444444444311 12334455555555555 33333333333445555555555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.49 E-value=6.3e-05 Score=63.30 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=57.4
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCC--cCcccCCccCCCCCCCCEEEccCCccceeCCcc---ccCCCCCCE
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNN--NFTGNIPISLGMLSSLQSLNLRKNSLSGQIPAS---FQNCTKLVM 76 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~ 76 (381)
|+.|++.+..++.. ..|-.+++|+.|.++.| ++.+-++.-...+++|++|++++|++.. ++. +..+.+|..
T Consensus 45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKS 120 (260)
T ss_pred hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhh
Confidence 45566666665532 23557889999999999 6665555555667999999999999872 333 456677888
Q ss_pred EeCcCCcCc
Q 046668 77 LDIGENEFV 85 (381)
Q Consensus 77 L~L~~n~l~ 85 (381)
||+.+|..+
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 888887655
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=1.4e-05 Score=67.74 Aligned_cols=97 Identities=22% Similarity=0.192 Sum_probs=61.1
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCC--ccccCCCCCCEEeC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIP--ASFQNCTKLVMLDI 79 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L 79 (381)
++.|..++|.++.+ ....+++.|++|.|+-|+|+... .|..|+.|++|+|..|.|.. +. ..+.++++|+.|.|
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWL 95 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhh
Confidence 45677777777632 22456788888888888877433 35567788888888887762 22 23567777888887
Q ss_pred cCCcCcccCChh----HHhcCCCCcEEE
Q 046668 80 GENEFVGNVPTW----IGIRFSSLMILN 103 (381)
Q Consensus 80 ~~n~l~~~~~~~----~~~~l~~L~~L~ 103 (381)
..|.-.|.-+.. +..-+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 777655443322 222356666664
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=2.9e-05 Score=65.81 Aligned_cols=100 Identities=21% Similarity=0.248 Sum_probs=52.1
Q ss_pred CCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCE
Q 046668 47 LSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHV 125 (381)
Q Consensus 47 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 125 (381)
+.+.++|++-++.+.++ .....|+.|++|.|+-|+++ .+.... .|++|++|+|+.|.|....- ..+.++|+|++
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~pl~--rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAPLQ--RCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchhHH--HHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 34455566666555422 22345666666666666665 332221 45666666666666552211 23455666666
Q ss_pred EeccCCcCCCCcCc-----cccccccccccc
Q 046668 126 LDLADNHLSGSIPK-----CISNISSMVTAN 151 (381)
Q Consensus 126 L~L~~n~l~~~~~~-----~~~~l~~L~~l~ 151 (381)
|.|..|.-.+.-+. .+..+++|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666665544332 233455555554
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.41 E-value=0.00055 Score=65.63 Aligned_cols=113 Identities=21% Similarity=0.130 Sum_probs=67.8
Q ss_pred CCCCCCEEECcCCc-Cccc-CCccCCCCCCCCEEEccCC-ccceeC----CccccCCCCCCEEeCcCCc-CcccCChhHH
Q 046668 22 NWLDLLVLNLGNNN-FTGN-IPISLGMLSSLQSLNLRKN-SLSGQI----PASFQNCTKLVMLDIGENE-FVGNVPTWIG 93 (381)
Q Consensus 22 ~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 93 (381)
.++.|+.|.+..+. +... .-.....++.|++|+++++ ...... ......+++|+.|+++.+. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46788888887774 3321 2233456788888888763 111111 1234566788888888887 4433334444
Q ss_pred hcCCCCcEEEccccc-cccc-CCcCccCCCCCCEEeccCCcCC
Q 046668 94 IRFSSLMILNLRSNK-FRGV-LPNQLCGLTSLHVLDLADNHLS 134 (381)
Q Consensus 94 ~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~ 134 (381)
..+++|++|.+.++. ++.. +......+++|++|+++++...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 347788888876665 3321 1233456778888888877653
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.19 E-value=0.0022 Score=32.29 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=9.9
Q ss_pred CccEEEcCCCcccccCCcccc
Q 046668 1 GIRILKLGENHFSGEIPDCWM 21 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~ 21 (381)
+|++||+++|+++ .+|..|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3455555555555 4444443
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.07 E-value=0.00012 Score=65.68 Aligned_cols=87 Identities=21% Similarity=0.120 Sum_probs=42.8
Q ss_pred cccccEEEccCCcc-cccCchh-hhccccCcEEeCCCcccccc--cChhhhccCCCCEEeccCCcCcccC-----chhhh
Q 046668 187 LKLMRLIDLSKNKF-SGEIPSE-IMNLRALVSLDLSCNSFTGR--IPNSIGALESILSIDFSANQLYGEI-----PQSIS 257 (381)
Q Consensus 187 ~~~L~~L~L~~n~~-~~~~~~~-~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~ 257 (381)
..+|+.|.++.++. +..--.. -.+++.|+.+++..+..... +-..-.+.+.|+.+.++++.+.... ...-.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 45677777776642 2111111 23456666666666543211 1122234566777777766532111 11223
Q ss_pred CCCCCCeeeCCCCcce
Q 046668 258 SLTFLSRLKLSNNNLS 273 (381)
Q Consensus 258 ~l~~L~~L~l~~N~l~ 273 (381)
.+..|+.+.+++++..
T Consensus 399 ~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLI 414 (483)
T ss_pred cccccceeeecCCCCc
Confidence 4456666666666653
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.87 E-value=0.0044 Score=31.17 Aligned_cols=12 Identities=42% Similarity=0.636 Sum_probs=4.8
Q ss_pred CCEEEccCCccc
Q 046668 50 LQSLNLRKNSLS 61 (381)
Q Consensus 50 L~~L~L~~n~l~ 61 (381)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.60 E-value=0.00093 Score=64.03 Aligned_cols=110 Identities=18% Similarity=0.136 Sum_probs=47.6
Q ss_pred CCCCCEEEccCCcccee--CCccccCCCCCCEEeCcCC-cCcccCC---hhHHhcCCCCcEEEccccc-ccccCCcCc-c
Q 046668 47 LSSLQSLNLRKNSLSGQ--IPASFQNCTKLVMLDIGEN-EFVGNVP---TWIGIRFSSLMILNLRSNK-FRGVLPNQL-C 118 (381)
Q Consensus 47 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~ 118 (381)
++.|+.|.+.++.-... .-.....+++|+.|+++++ ......+ ..+...+.+|+.|+++.+. ++...-..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566665555422211 1233445566666666552 1110111 1122245556666666555 332211111 1
Q ss_pred CCCCCCEEeccCCc-CCCCc-CcccccccccccccccCCc
Q 046668 119 GLTSLHVLDLADNH-LSGSI-PKCISNISSMVTANFSIGT 156 (381)
Q Consensus 119 ~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~l~~~~~~ 156 (381)
.+++|++|.+.++. ++... -.....++.|+.++++.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25566666655554 33211 1222345556666555444
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.03 E-value=9.4e-05 Score=69.81 Aligned_cols=184 Identities=24% Similarity=0.272 Sum_probs=100.9
Q ss_pred CCEEECcCCcCccc----CCccCCCCCCCCEEEccCCccceeCC----ccccCC-CCCCEEeCcCCcCccc----CChhH
Q 046668 26 LLVLNLGNNNFTGN----IPISLGMLSSLQSLNLRKNSLSGQIP----ASFQNC-TKLVMLDIGENEFVGN----VPTWI 92 (381)
Q Consensus 26 L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~l~~~----~~~~~ 92 (381)
+..|+|.+|.+... +..++....+|+.|++++|.+.+.-- ..+... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 77778888877533 33445667788888888887762211 122222 4567777777777532 33344
Q ss_pred HhcCCCCcEEEcccccccc----cCCc----CccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCC
Q 046668 93 GIRFSSLMILNLRSNKFRG----VLPN----QLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVS 164 (381)
Q Consensus 93 ~~~l~~L~~L~L~~n~l~~----~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 164 (381)
. ....++.++++.|.+.. .++. .+....++++|.+++|.++.. ... .+
T Consensus 169 ~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~---~c~---~l----------------- 224 (478)
T KOG4308|consen 169 E-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSS---SCA---LL----------------- 224 (478)
T ss_pred h-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChH---HHH---HH-----------------
Confidence 4 25677777887777641 1112 223456677777777776511 000 00
Q ss_pred CCccccceEEEEeccccchhhhccc-ccEEEccCCccccc----Cchhhhcc-ccCcEEeCCCcccccccCh----hhhc
Q 046668 165 TGKYVEDALLVLKGKAVEYNTILKL-MRLIDLSKNKFSGE----IPSEIMNL-RALVSLDLSCNSFTGRIPN----SIGA 234 (381)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~L~~n~~~~~----~~~~~~~l-~~L~~L~Ls~n~l~~~~~~----~~~~ 234 (381)
...+...+. +..|++..|.+.+. ....+..+ ..+++++++.|.+...... .+..
T Consensus 225 ----------------~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~ 288 (478)
T KOG4308|consen 225 ----------------DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVS 288 (478)
T ss_pred ----------------HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhh
Confidence 000011112 34466666666533 12233344 5667777777777654332 3344
Q ss_pred cCCCCEEeccCCcCc
Q 046668 235 LESILSIDFSANQLY 249 (381)
Q Consensus 235 l~~L~~L~L~~n~l~ 249 (381)
.++++.+.++.|.+.
T Consensus 289 ~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 289 CRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHhhcccCccc
Confidence 557777777777765
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.05 E-value=0.033 Score=25.91 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=3.5
Q ss_pred CCEEeCcCCcC
Q 046668 74 LVMLDIGENEF 84 (381)
Q Consensus 74 L~~L~L~~n~l 84 (381)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.91 E-value=0.063 Score=28.08 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=13.5
Q ss_pred CCCCCEEeCcCCcCcccCChhHH
Q 046668 71 CTKLVMLDIGENEFVGNVPTWIG 93 (381)
Q Consensus 71 l~~L~~L~L~~n~l~~~~~~~~~ 93 (381)
+++|++|+|++|++. .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 345666666666665 5665544
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.91 E-value=0.063 Score=28.08 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=13.5
Q ss_pred CCCCCEEeCcCCcCcccCChhHH
Q 046668 71 CTKLVMLDIGENEFVGNVPTWIG 93 (381)
Q Consensus 71 l~~L~~L~L~~n~l~~~~~~~~~ 93 (381)
+++|++|+|++|++. .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 345666666666665 5665544
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.83 E-value=0.0029 Score=52.58 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=69.9
Q ss_pred hhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCe
Q 046668 185 TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSR 264 (381)
Q Consensus 185 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 264 (381)
......+.||++.|++- ..-..|+.++.+..|+++.|.+. ..|..++....+..+++..|..+ ..|.++...+.+++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 34566888888888775 44556778888889999999888 88888888888888888888887 67888888899999
Q ss_pred eeCCCCcce
Q 046668 265 LKLSNNNLS 273 (381)
Q Consensus 265 L~l~~N~l~ 273 (381)
+++-+|++.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 999888764
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.78 E-value=0.0017 Score=53.98 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=74.7
Q ss_pred cCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCC
Q 046668 35 NFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP 114 (381)
Q Consensus 35 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 114 (381)
.++.+.-..+......+.||++.|++. .....|.-+..|..||++.|++. ..|.+.. ....++.+++.+|..+ ..|
T Consensus 29 ~~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~-q~~e~~~~~~~~n~~~-~~p 104 (326)
T KOG0473|consen 29 ELSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAK-QQRETVNAASHKNNHS-QQP 104 (326)
T ss_pred HhcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHH-HHHHHHHHHhhccchh-hCC
Confidence 334333345566778888999988876 45566777888888999999887 7888777 6777888888888877 778
Q ss_pred cCccCCCCCCEEeccCCcCC
Q 046668 115 NQLCGLTSLHVLDLADNHLS 134 (381)
Q Consensus 115 ~~~~~l~~L~~L~L~~n~l~ 134 (381)
..+...++++.+++..|.+.
T Consensus 105 ~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccccCCcchhhhccCcch
Confidence 88999999999999888765
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.69 E-value=0.094 Score=27.40 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=7.2
Q ss_pred CCCCEEECcCCcCc
Q 046668 24 LDLLVLNLGNNNFT 37 (381)
Q Consensus 24 ~~L~~L~L~~n~l~ 37 (381)
++|++|+|++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.69 E-value=0.094 Score=27.40 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=7.2
Q ss_pred CCCCEEECcCCcCc
Q 046668 24 LDLLVLNLGNNNFT 37 (381)
Q Consensus 24 ~~L~~L~L~~n~l~ 37 (381)
++|++|+|++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 80
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=91.37 E-value=0.24 Score=28.80 Aligned_cols=27 Identities=15% Similarity=-0.020 Sum_probs=13.4
Q ss_pred eeeeehhhhhHHHHHHHHhhhhhccch
Q 046668 332 WFYVSLALGFVVGFWFVMGPLFVSRKW 358 (381)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (381)
.+..++++.+++.++++.+++++++|+
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhheEEec
Confidence 344555555555555544544444443
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=90.44 E-value=0.16 Score=56.88 Aligned_cols=46 Identities=22% Similarity=0.160 Sum_probs=37.0
Q ss_pred eccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCC
Q 046668 242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDP 287 (381)
Q Consensus 242 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~ 287 (381)
||++|+|+...+..|..+++|+.|+|++|+|.|+|.......|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~ 46 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEE 46 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHh
Confidence 5788999877777888899999999999999999987644444443
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.85 E-value=0.032 Score=45.52 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=46.7
Q ss_pred CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeC-Ccccc-CCCCCCEEeCcCCc-CcccCChhHHhcCCCCcE
Q 046668 25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQI-PASFQ-NCTKLVMLDIGENE-FVGNVPTWIGIRFSSLMI 101 (381)
Q Consensus 25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~ 101 (381)
.++.+|=++..|..+--+.+.+++.++.|.+.+|.--+.- -+.++ -.++|+.|++++|. +++.--..+. .+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHH
Confidence 4566777777776555555666777777777766422100 01111 34678888888775 3322223444 5677777
Q ss_pred EEccc
Q 046668 102 LNLRS 106 (381)
Q Consensus 102 L~L~~ 106 (381)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77654
No 83
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=89.11 E-value=0.26 Score=38.16 Aligned_cols=14 Identities=7% Similarity=0.069 Sum_probs=7.0
Q ss_pred ceeeeehhhhhHHH
Q 046668 331 NWFYVSLALGFVVG 344 (381)
Q Consensus 331 ~~~~~~~~~~~~~~ 344 (381)
..+.+++++|+.+.
T Consensus 48 knIVIGvVVGVGg~ 61 (154)
T PF04478_consen 48 KNIVIGVVVGVGGP 61 (154)
T ss_pred ccEEEEEEecccHH
Confidence 34556655554333
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.37 E-value=0.12 Score=26.33 Aligned_cols=11 Identities=55% Similarity=0.658 Sum_probs=3.5
Q ss_pred CcEEeCCCccc
Q 046668 214 LVSLDLSCNSF 224 (381)
Q Consensus 214 L~~L~Ls~n~l 224 (381)
|++|+|++|.+
T Consensus 4 L~~L~l~~n~i 14 (24)
T PF13516_consen 4 LETLDLSNNQI 14 (24)
T ss_dssp -SEEE-TSSBE
T ss_pred CCEEEccCCcC
Confidence 33333333333
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.13 E-value=0.12 Score=42.35 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=57.3
Q ss_pred ccEEEccCCcccccCchhhhccccCcEEeCCCccccccc-Chhh-hccCCCCEEeccCCc-CcccCchhhhCCCCCCeee
Q 046668 190 MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRI-PNSI-GALESILSIDFSANQ-LYGEIPQSISSLTFLSRLK 266 (381)
Q Consensus 190 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~-~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~ 266 (381)
++.++-++..+..+--+.+..++.++.|.+.++.--+.. -.-+ +-.++|+.|++++|. |++.-...+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 677888888777666677788888888888877532110 0011 134789999999885 6755566778888888888
Q ss_pred CCCCcc
Q 046668 267 LSNNNL 272 (381)
Q Consensus 267 l~~N~l 272 (381)
+.+=+.
T Consensus 183 l~~l~~ 188 (221)
T KOG3864|consen 183 LYDLPY 188 (221)
T ss_pred hcCchh
Confidence 876443
No 86
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=87.14 E-value=0.6 Score=38.37 Aligned_cols=36 Identities=8% Similarity=0.054 Sum_probs=21.8
Q ss_pred CccceeeeehhhhhHHHHHHHHhhhhhccchhhHHH
Q 046668 328 DEVNWFYVSLALGFVVGFWFVMGPLFVSRKWRSMYY 363 (381)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (381)
.+..++.++++.|+++++++++++++++++++...+
T Consensus 34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k 69 (221)
T PF08374_consen 34 KDYVKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHK 69 (221)
T ss_pred ccceeeeeeeecchhhhHHHHHHHHHHHHHhhcccc
Confidence 345677788887777776666665555434433333
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=86.87 E-value=0.46 Score=43.40 Aligned_cols=132 Identities=20% Similarity=0.255 Sum_probs=84.4
Q ss_pred ccEEEcCCCcc-cccCCccc-cCCCCCCEEECcCCc-CcccCCccCC-CCCCCCEEEccCCccc--eeCCccccCCCCCC
Q 046668 2 IRILKLGENHF-SGEIPDCW-MNWLDLLVLNLGNNN-FTGNIPISLG-MLSSLQSLNLRKNSLS--GQIPASFQNCTKLV 75 (381)
Q Consensus 2 L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~ 75 (381)
||.|+.+++.- +...-.++ .++.+|++|.++.++ ++..--..++ +.+.|+.+++..+... +.+...-.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 57777777743 32222333 468999999999986 4422222232 5789999999988543 11223335789999
Q ss_pred EEeCcCCcCcccC----ChhHHhcCCCCcEEEccccccc-ccCCcCccCCCCCCEEeccCCcC
Q 046668 76 MLDIGENEFVGNV----PTWIGIRFSSLMILNLRSNKFR-GVLPNQLCGLTSLHVLDLADNHL 133 (381)
Q Consensus 76 ~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l 133 (381)
++.++++.....- -......+..|+.+.|+++... ...-..+..+++|+.+++.+++-
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 9999988653211 0111124678999999988754 22234566778999999988764
No 88
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=86.44 E-value=0.4 Score=27.35 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=10.5
Q ss_pred eeehhhhhHHHHHHHHhhhh
Q 046668 334 YVSLALGFVVGFWFVMGPLF 353 (381)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~ 353 (381)
.+++++|+++++++++.+++
T Consensus 5 ~IaIIv~V~vg~~iiii~~~ 24 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMF 24 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34556666666555444333
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.13 E-value=0.011 Score=56.04 Aligned_cols=156 Identities=22% Similarity=0.175 Sum_probs=83.3
Q ss_pred ccEEEcCCCcccccCCcc----ccCC-CCCCEEECcCCcCccc----CCccCCCCCCCCEEEccCCccce----eCCccc
Q 046668 2 IRILKLGENHFSGEIPDC----WMNW-LDLLVLNLGNNNFTGN----IPISLGMLSSLQSLNLRKNSLSG----QIPASF 68 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~ 68 (381)
|+.|++++|.+....-.. +... ..++.|++..|.+++. +...+.....++.++++.|.+.. .++.++
T Consensus 117 L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l 196 (478)
T KOG4308|consen 117 LGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQAL 196 (478)
T ss_pred HhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhh
Confidence 456777777766322111 1121 3466677777766532 33445556777777777776631 122223
Q ss_pred c----CCCCCCEEeCcCCcCcccCCh---hHHhcCCC-CcEEEccccccccc----CCcCccCC-CCCCEEeccCCcCCC
Q 046668 69 Q----NCTKLVMLDIGENEFVGNVPT---WIGIRFSS-LMILNLRSNKFRGV----LPNQLCGL-TSLHVLDLADNHLSG 135 (381)
Q Consensus 69 ~----~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~ 135 (381)
. ...++++|.+.+|.++...-. ......++ +..+++.+|.+.+. ....+..+ ..+++++++.|.++.
T Consensus 197 ~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 197 ESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred hhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 3 466777777777766421111 11112233 55577777776533 12334444 567777777777764
Q ss_pred CcC----cccccccccccccccCCcc
Q 046668 136 SIP----KCISNISSMVTANFSIGTD 157 (381)
Q Consensus 136 ~~~----~~~~~l~~L~~l~~~~~~~ 157 (381)
... ..+..++.++.+.++.+..
T Consensus 277 ~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 277 KGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred cchHHHHHHHhhhHHHHHhhcccCcc
Confidence 322 3344555666666555543
No 90
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=84.02 E-value=0.51 Score=35.46 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=13.5
Q ss_pred eeeehhhhhHHHHHHHHhhhhhccc
Q 046668 333 FYVSLALGFVVGFWFVMGPLFVSRK 357 (381)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (381)
..+++++|++++++.++++++|+.+
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666555544444433
No 91
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=83.24 E-value=0.54 Score=33.83 Aligned_cols=28 Identities=14% Similarity=-0.026 Sum_probs=13.7
Q ss_pred eeeehhhhhHHHHHHHHhhhhhccchhh
Q 046668 333 FYVSLALGFVVGFWFVMGPLFVSRKWRS 360 (381)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (381)
...++++++++++.++++++++++.+|+
T Consensus 67 aiagi~vg~~~~v~~lv~~l~w~f~~r~ 94 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGFLCWWFVCRG 94 (96)
T ss_pred cEEEEEeehhhHHHHHHHHHhheeEEee
Confidence 3445555555554444444444444443
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.68 E-value=1.2 Score=23.35 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=7.5
Q ss_pred CCCCEEECcCCcCc
Q 046668 24 LDLLVLNLGNNNFT 37 (381)
Q Consensus 24 ~~L~~L~L~~n~l~ 37 (381)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=82.36 E-value=1.4 Score=34.07 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=5.8
Q ss_pred HHHhhhhhccchhh
Q 046668 347 FVMGPLFVSRKWRS 360 (381)
Q Consensus 347 ~~~~~~~~~~~~~~ 360 (381)
++++++.++||||.
T Consensus 74 ~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 74 SVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHheeEEeeccc
Confidence 33333444444444
No 94
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.18 E-value=2.3 Score=22.23 Aligned_cols=16 Identities=25% Similarity=0.601 Sum_probs=9.2
Q ss_pred CCCEEeCcCCcCcccCC
Q 046668 73 KLVMLDIGENEFVGNVP 89 (381)
Q Consensus 73 ~L~~L~L~~n~l~~~~~ 89 (381)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4556666666655 444
No 95
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.32 E-value=3.3 Score=21.98 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=8.2
Q ss_pred CCCCEEECcCCcCc
Q 046668 24 LDLLVLNLGNNNFT 37 (381)
Q Consensus 24 ~~L~~L~L~~n~l~ 37 (381)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666554
No 96
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=71.34 E-value=4.8 Score=23.35 Aligned_cols=14 Identities=36% Similarity=0.748 Sum_probs=8.2
Q ss_pred HHhhhhhccchhhH
Q 046668 348 VMGPLFVSRKWRSM 361 (381)
Q Consensus 348 ~~~~~~~~~~~~~~ 361 (381)
.++.++++|+|..+
T Consensus 23 ~iva~~iYRKw~aR 36 (43)
T PF08114_consen 23 GIVALFIYRKWQAR 36 (43)
T ss_pred HHHHHHHHHHHHHH
Confidence 34456677777544
No 97
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=70.92 E-value=3.2 Score=29.10 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=20.2
Q ss_pred cceeeeehhhhhHHHHHHHHhhhhhccchh
Q 046668 330 VNWFYVSLALGFVVGFWFVMGPLFVSRKWR 359 (381)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (381)
..|.+++.+.|++++++++.++++.+.||+
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 357778878777777777666555555554
No 98
>PRK00523 hypothetical protein; Provisional
Probab=70.12 E-value=3 Score=27.80 Aligned_cols=31 Identities=23% Similarity=0.089 Sum_probs=17.1
Q ss_pred eeehhhhhHHHHHHHHhhhhhccchhhHHHH
Q 046668 334 YVSLALGFVVGFWFVMGPLFVSRKWRSMYYH 364 (381)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (381)
.++++++++++++-+++.+++.|++-.+|..
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445566676766666655
No 99
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=69.22 E-value=21 Score=33.64 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=28.3
Q ss_pred ccEEEcCCCcccccCCccccC---CCCCCEEECcCCcCc---ccCCccCCCCCCCCEEEccCCcc
Q 046668 2 IRILKLGENHFSGEIPDCWMN---WLDLLVLNLGNNNFT---GNIPISLGMLSSLQSLNLRKNSL 60 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l 60 (381)
+.+++++.|.....+|..+.. -.-++.++.+...+. ..-+-.++.-+.++..+++.|..
T Consensus 216 lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred ccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 345666666665555544322 123555555555442 11222233344566666665543
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.33 E-value=2.4 Score=40.29 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=38.8
Q ss_pred CCCCCCEEeCcCCcCcccCC--hhHHhcCCCCcEEEcccccccccCCcCccCC--CCCCEEeccCCcCCC
Q 046668 70 NCTKLVMLDIGENEFVGNVP--TWIGIRFSSLMILNLRSNKFRGVLPNQLCGL--TSLHVLDLADNHLSG 135 (381)
Q Consensus 70 ~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~ 135 (381)
+-+.+..+.|++|++. .+. +.+...-++|+.|+|++|...-.....+.++ ..|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 4567777888888775 222 2333356788888888882221111222222 347888888888764
No 101
>PRK01844 hypothetical protein; Provisional
Probab=67.17 E-value=3.9 Score=27.27 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHhhhhhccchhhHHHHH
Q 046668 337 LALGFVVGFWFVMGPLFVSRKWRSMYYHF 365 (381)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (381)
++++++.+++-+++.+++.|++-.+|.+-
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455566666666666543
No 102
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.17 E-value=4.3 Score=38.71 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=17.1
Q ss_pred ccccCcEEeCCCcccccc--cChhhhccCCCCEEeccCC
Q 046668 210 NLRALVSLDLSCNSFTGR--IPNSIGALESILSIDFSAN 246 (381)
Q Consensus 210 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n 246 (381)
+.+.+..++|++|++... +.......|.|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344555555555555421 1111123355556666665
No 103
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=62.79 E-value=4.2 Score=31.19 Aligned_cols=16 Identities=6% Similarity=-0.162 Sum_probs=8.6
Q ss_pred HhhhhhccchhhHHHH
Q 046668 349 MGPLFVSRKWRSMYYH 364 (381)
Q Consensus 349 ~~~~~~~~~~~~~~~~ 364 (381)
++++++++.-||+.++
T Consensus 14 l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 14 LFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3334455666666555
No 104
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=61.54 E-value=4.9 Score=36.02 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=13.4
Q ss_pred eeeehhhhhHHHHHHHHh--hhhhccchhh
Q 046668 333 FYVSLALGFVVGFWFVMG--PLFVSRKWRS 360 (381)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 360 (381)
.++.+++|++++++++++ ++++.||+++
T Consensus 271 ~~vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 355566666555444444 3334444433
No 105
>PF10725 DUF2517: Protein of unknown function (DUF2517); InterPro: IPR019663 This entry represents proteins conserved in Proteobacteria and includes the predicted protein YbfA. The function is not known.
Probab=55.53 E-value=15 Score=23.43 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhhhccchhhHHHHHHHHhhceeeE
Q 046668 342 VVGFWFVMGPLFVSRKWRSMYYHFLARLGDKNFW 375 (381)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (381)
++++.+++.-+.++++-|-+++.++-+.|.++..
T Consensus 17 vv~~GvlAlPvMLf~~dRArfYSyLhrvW~KTSd 50 (63)
T PF10725_consen 17 VVLAGVLALPVMLFRSDRARFYSYLHRVWSKTSD 50 (63)
T ss_pred HHHHHHhhhheeeeecchhHHHHHHHHHHHhcCC
Confidence 3333444555666778889999999998877653
No 106
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=55.10 E-value=19 Score=28.15 Aligned_cols=23 Identities=13% Similarity=0.132 Sum_probs=14.1
Q ss_pred CCccceeeeehhhhhHHHHHHHH
Q 046668 327 EDEVNWFYVSLALGFVVGFWFVM 349 (381)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~ 349 (381)
+.-...+.+++++++++++++++
T Consensus 48 knIVIGvVVGVGg~ill~il~lv 70 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALV 70 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhh
Confidence 33456677777777777644433
No 107
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=51.41 E-value=4.9 Score=37.88 Aligned_cols=14 Identities=7% Similarity=-0.088 Sum_probs=0.0
Q ss_pred hhhhccchhhHHHH
Q 046668 351 PLFVSRKWRSMYYH 364 (381)
Q Consensus 351 ~~~~~~~~~~~~~~ 364 (381)
+++.++++||+++.
T Consensus 373 ~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 373 WVCLRCRRRRRQRD 386 (439)
T ss_dssp --------------
T ss_pred heeeeehhcccccc
Confidence 33444444444443
No 108
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=50.62 E-value=5.2 Score=31.49 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=0.0
Q ss_pred eeeehhhhhHHHHHHHHh-hhhhccchhhHH
Q 046668 333 FYVSLALGFVVGFWFVMG-PLFVSRKWRSMY 362 (381)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 362 (381)
.++++++|+++++.++.+ ++++.||+.-||
T Consensus 130 tLVGIIVGVLlaIG~igGIIivvvRKmSGRy 160 (162)
T PF05808_consen 130 TLVGIIVGVLLAIGFIGGIIIVVVRKMSGRY 160 (162)
T ss_dssp -------------------------------
T ss_pred eeeeehhhHHHHHHHHhheeeEEeehhcccc
Confidence 567777777776665554 455556665555
No 109
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=50.14 E-value=5.1 Score=26.08 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=0.5
Q ss_pred eehhhhhHHHHH-HHHhhhhhccchhhHHH
Q 046668 335 VSLALGFVVGFW-FVMGPLFVSRKWRSMYY 363 (381)
Q Consensus 335 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 363 (381)
.++++|.+++++ +++.++++.+|.|++-.
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR~rkkdE 41 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYRMRKKDE 41 (64)
T ss_dssp -------------------------S----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 444444444332 22233334444444433
No 110
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.08 E-value=13 Score=19.14 Aligned_cols=11 Identities=27% Similarity=0.274 Sum_probs=6.0
Q ss_pred CCCCEEECcCC
Q 046668 24 LDLLVLNLGNN 34 (381)
Q Consensus 24 ~~L~~L~L~~n 34 (381)
++|+.|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 111
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=46.57 E-value=4.6 Score=31.15 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=2.2
Q ss_pred HHHHHH
Q 046668 363 YHFLAR 368 (381)
Q Consensus 363 ~~~~~~ 368 (381)
...+.+
T Consensus 40 ~ftLPk 45 (158)
T PF11770_consen 40 RFTLPK 45 (158)
T ss_pred ccchHH
Confidence 333333
No 112
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=46.48 E-value=17 Score=24.01 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=13.5
Q ss_pred ceeeeehhhhhHHHHHHHHhhhhhc
Q 046668 331 NWFYVSLALGFVVGFWFVMGPLFVS 355 (381)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (381)
.|..++++.+++++++-.+.=++++
T Consensus 32 qW~aIGvi~gi~~~~lt~ltN~YFK 56 (68)
T PF04971_consen 32 QWAAIGVIGGIFFGLLTYLTNLYFK 56 (68)
T ss_pred cchhHHHHHHHHHHHHHHHhHhhhh
Confidence 4556666666666655444433333
No 113
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=46.05 E-value=6.7 Score=34.53 Aligned_cols=13 Identities=0% Similarity=-0.187 Sum_probs=0.0
Q ss_pred hhccchhhHHHHH
Q 046668 353 FVSRKWRSMYYHF 365 (381)
Q Consensus 353 ~~~~~~~~~~~~~ 365 (381)
++++|+||+-...
T Consensus 167 ~icyrrkR~GK~~ 179 (290)
T PF05454_consen 167 CICYRRKRKGKMS 179 (290)
T ss_dssp -------------
T ss_pred HHhhhhhhccccc
Confidence 3333444433333
No 114
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=45.58 E-value=9.1 Score=33.21 Aligned_cols=7 Identities=14% Similarity=-0.017 Sum_probs=2.7
Q ss_pred hhhhhcc
Q 046668 350 GPLFVSR 356 (381)
Q Consensus 350 ~~~~~~~ 356 (381)
+++++|.
T Consensus 276 iiLYiWl 282 (295)
T TIGR01478 276 IILYIWL 282 (295)
T ss_pred HHHHHHH
Confidence 3344443
No 115
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=45.05 E-value=76 Score=27.84 Aligned_cols=34 Identities=15% Similarity=0.001 Sum_probs=16.1
Q ss_pred ehhhhhHHHHHHHHhhhhhccchhhHHHHHHHHh
Q 046668 336 SLALGFVVGFWFVMGPLFVSRKWRSMYYHFLARL 369 (381)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (381)
+++.|+++++++.+.+++..|..|++...-|++.
T Consensus 218 g~~~G~~~L~ll~~lv~~~vr~krk~k~~eMEr~ 251 (278)
T PF06697_consen 218 GVVGGVVLLGLLSLLVAMLVRYKRKKKIEEMERR 251 (278)
T ss_pred EehHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Confidence 3455555544443344444444445555555443
No 116
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.26 E-value=18 Score=24.00 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=9.3
Q ss_pred HHhhhhhccchhhHHHH
Q 046668 348 VMGPLFVSRKWRSMYYH 364 (381)
Q Consensus 348 ~~~~~~~~~~~~~~~~~ 364 (381)
+++.+++.|+.-.++.+
T Consensus 18 ~~~G~fiark~~~k~lk 34 (71)
T COG3763 18 LIGGFFIARKQMKKQLK 34 (71)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34446666666555544
No 117
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=43.23 E-value=15 Score=30.28 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=9.7
Q ss_pred ceeeeehhhhhHHHHHHHHh
Q 046668 331 NWFYVSLALGFVVGFWFVMG 350 (381)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~ 350 (381)
.+..+++++-++++++++++
T Consensus 156 ~~~~laI~lPvvv~~~~~~~ 175 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIM 175 (189)
T ss_pred cceeEEEEccHHHHHHHHHH
Confidence 44455555555544444443
No 118
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=42.25 E-value=20 Score=31.87 Aligned_cols=32 Identities=6% Similarity=-0.010 Sum_probs=20.6
Q ss_pred eehhhhhHHHHHHHHhhhhhccchhhHHHHHH
Q 046668 335 VSLALGFVVGFWFVMGPLFVSRKWRSMYYHFL 366 (381)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (381)
.+++..++++++++++.++++.-||+|+.+.+
T Consensus 256 t~I~aSiiaIliIVLIMvIIYLILRYRRKKKm 287 (299)
T PF02009_consen 256 TAIIASIIAILIIVLIMVIIYLILRYRRKKKM 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455555666666677778888888874443
No 119
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=41.45 E-value=33 Score=26.32 Aligned_cols=29 Identities=7% Similarity=0.166 Sum_probs=13.1
Q ss_pred ehhhhhHHHHHHHHhhhhhccchhhHHHH
Q 046668 336 SLALGFVVGFWFVMGPLFVSRKWRSMYYH 364 (381)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (381)
.+.+++++.++++++..+++.+++++...
T Consensus 33 tILiaIvVliiiiivli~lcssRKkKaaA 61 (189)
T PF05568_consen 33 TILIAIVVLIIIIIVLIYLCSSRKKKAAA 61 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 34455555544444444444444444333
No 120
>PF15069 FAM163: FAM163 family
Probab=40.58 E-value=31 Score=26.67 Aligned_cols=23 Identities=13% Similarity=0.093 Sum_probs=11.7
Q ss_pred eeehhhhhHHHHHHHHhhhhhcc
Q 046668 334 YVSLALGFVVGFWFVMGPLFVSR 356 (381)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~ 356 (381)
.+..++.+.++++.++++++++|
T Consensus 7 VItGgILAtVILLcIIaVLCYCR 29 (143)
T PF15069_consen 7 VITGGILATVILLCIIAVLCYCR 29 (143)
T ss_pred EEechHHHHHHHHHHHHHHHHHh
Confidence 34444444444445556666665
No 121
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=40.52 E-value=41 Score=20.58 Aligned_cols=9 Identities=11% Similarity=0.280 Sum_probs=3.4
Q ss_pred hhhccchhh
Q 046668 352 LFVSRKWRS 360 (381)
Q Consensus 352 ~~~~~~~~~ 360 (381)
++.+++.++
T Consensus 27 ~w~~~~~~k 35 (49)
T PF05545_consen 27 IWAYRPRNK 35 (49)
T ss_pred HHHHcccch
Confidence 333343333
No 122
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=40.44 E-value=10 Score=28.39 Aligned_cols=11 Identities=27% Similarity=0.355 Sum_probs=0.0
Q ss_pred hhhhccchhhH
Q 046668 351 PLFVSRKWRSM 361 (381)
Q Consensus 351 ~~~~~~~~~~~ 361 (381)
.++++||.|++
T Consensus 97 g~lv~rrcrrr 107 (129)
T PF12191_consen 97 GFLVWRRCRRR 107 (129)
T ss_dssp -----------
T ss_pred HHHHHhhhhcc
Confidence 34444444333
No 123
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=39.88 E-value=11 Score=23.30 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=10.4
Q ss_pred hhhhhccchhhHHHHHHHHh
Q 046668 350 GPLFVSRKWRSMYYHFLARL 369 (381)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~ 369 (381)
++.++.--.++.|+|..+..
T Consensus 17 g~~I~~~~K~ygYkht~d~~ 36 (50)
T PF12606_consen 17 GLSICTTLKAYGYKHTVDPL 36 (50)
T ss_pred HHHHHHHhhccccccccCCC
Confidence 33334444456666666653
No 124
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=39.39 E-value=74 Score=23.30 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=5.5
Q ss_pred eeeehhhhhHHHH
Q 046668 333 FYVSLALGFVVGF 345 (381)
Q Consensus 333 ~~~~~~~~~~~~~ 345 (381)
.+++++++.++.+
T Consensus 63 ffvglii~LivSL 75 (128)
T PF15145_consen 63 FFVGLIIVLIVSL 75 (128)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444433
No 125
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=39.02 E-value=37 Score=24.39 Aligned_cols=7 Identities=14% Similarity=0.724 Sum_probs=3.1
Q ss_pred cceeeee
Q 046668 330 VNWFYVS 336 (381)
Q Consensus 330 ~~~~~~~ 336 (381)
..|.+++
T Consensus 15 ~sW~~LV 21 (102)
T PF15176_consen 15 RSWPFLV 21 (102)
T ss_pred cccHhHH
Confidence 3554443
No 126
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=38.31 E-value=18 Score=33.84 Aligned_cols=28 Identities=18% Similarity=0.008 Sum_probs=15.3
Q ss_pred eeeehhhhhHHHHHHHHhhhhhccchhh
Q 046668 333 FYVSLALGFVVGFWFVMGPLFVSRKWRS 360 (381)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (381)
.+.+|.+++|+++.-++++++||+-.|.
T Consensus 368 aIaGIsvavvvvVgglvGfLcWwf~crg 395 (397)
T PF03302_consen 368 AIAGISVAVVVVVGGLVGFLCWWFICRG 395 (397)
T ss_pred ceeeeeehhHHHHHHHHHHHhhheeecc
Confidence 3444555555555555666666665543
No 127
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=38.06 E-value=44 Score=27.33 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=14.5
Q ss_pred eeeeehhhhhHHHHHHHHhhhhhccch
Q 046668 332 WFYVSLALGFVVGFWFVMGPLFVSRKW 358 (381)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (381)
+...+++.|+|+.+.+..++++.++.+
T Consensus 158 FD~~SFiGGIVL~LGv~aI~ff~~KF~ 184 (186)
T PF05283_consen 158 FDAASFIGGIVLTLGVLAIIFFLYKFC 184 (186)
T ss_pred CchhhhhhHHHHHHHHHHHHHHHhhhc
Confidence 334455666666665555555554433
No 128
>PF15069 FAM163: FAM163 family
Probab=37.42 E-value=23 Score=27.28 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=25.4
Q ss_pred eehhhhhHHHHHHHHhhhhhccchhhHHHH
Q 046668 335 VSLALGFVVGFWFVMGPLFVSRKWRSMYYH 364 (381)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (381)
.+++.|.+++.++++.++.+...-|.+|++
T Consensus 5 TvVItGgILAtVILLcIIaVLCYCRLQYYC 34 (143)
T PF15069_consen 5 TVVITGGILATVILLCIIAVLCYCRLQYYC 34 (143)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHhhHHHH
Confidence 567788899999999999999999988864
No 129
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.27 E-value=19 Score=41.61 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=27.2
Q ss_pred ECcCCcCcccCCccCCCCCCCCEEEccCCccc
Q 046668 30 NLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61 (381)
Q Consensus 30 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 61 (381)
||++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998777788888999999999988765
No 130
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=36.63 E-value=35 Score=27.81 Aligned_cols=8 Identities=25% Similarity=0.546 Sum_probs=2.9
Q ss_pred eehhhhhH
Q 046668 335 VSLALGFV 342 (381)
Q Consensus 335 ~~~~~~~~ 342 (381)
++++++++
T Consensus 82 vgvi~~Vi 89 (179)
T PF13908_consen 82 VGVICGVI 89 (179)
T ss_pred eehhhHHH
Confidence 33333333
No 131
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=35.42 E-value=46 Score=23.95 Aligned_cols=28 Identities=14% Similarity=-0.020 Sum_probs=15.3
Q ss_pred ceeeeehhhhhHHHHHHHHhhhhhccch
Q 046668 331 NWFYVSLALGFVVGFWFVMGPLFVSRKW 358 (381)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (381)
......+.+|+|++++++-+++++.-|.
T Consensus 13 ~g~sW~~LVGVv~~al~~SlLIalaaKC 40 (102)
T PF15176_consen 13 GGRSWPFLVGVVVTALVTSLLIALAAKC 40 (102)
T ss_pred CCcccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 5455566777777665544444443333
No 132
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=34.84 E-value=28 Score=26.20 Aligned_cols=23 Identities=26% Similarity=0.066 Sum_probs=9.7
Q ss_pred hhhhhHHHHHHHHhhhhhccchh
Q 046668 337 LALGFVVGFWFVMGPLFVSRKWR 359 (381)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~ 359 (381)
+++++.++++++.+.+++++..|
T Consensus 105 ~il~il~~i~is~~~~~~yr~~r 127 (139)
T PHA03099 105 GIVLVLVGIIITCCLLSVYRFTR 127 (139)
T ss_pred HHHHHHHHHHHHHHHHhhheeee
Confidence 34444444444444344443333
No 133
>PF15050 SCIMP: SCIMP protein
Probab=34.65 E-value=16 Score=27.05 Aligned_cols=7 Identities=29% Similarity=0.031 Sum_probs=2.8
Q ss_pred hhhhhcc
Q 046668 350 GPLFVSR 356 (381)
Q Consensus 350 ~~~~~~~ 356 (381)
+++|++|
T Consensus 26 IlyCvcR 32 (133)
T PF15050_consen 26 ILYCVCR 32 (133)
T ss_pred HHHHHHH
Confidence 3344444
No 134
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=33.93 E-value=29 Score=27.37 Aligned_cols=14 Identities=21% Similarity=0.301 Sum_probs=8.5
Q ss_pred hccchhhHHHHHHH
Q 046668 354 VSRKWRSMYYHFLA 367 (381)
Q Consensus 354 ~~~~~~~~~~~~~~ 367 (381)
-.++.+++|..++.
T Consensus 24 kl~kl~r~Y~~lm~ 37 (151)
T PF14584_consen 24 KLRKLKRRYDALMR 37 (151)
T ss_pred HHHHHHHHHHHHhC
Confidence 33556777777753
No 135
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=33.69 E-value=1.2e+02 Score=27.12 Aligned_cols=25 Identities=16% Similarity=-0.010 Sum_probs=10.0
Q ss_pred eeehhhhhHHHHHHHHh-hhhhccch
Q 046668 334 YVSLALGFVVGFWFVMG-PLFVSRKW 358 (381)
Q Consensus 334 ~~~~~~~~~~~~~~~~~-~~~~~~~~ 358 (381)
++.++++++++++.+++ .++|+|-+
T Consensus 200 lv~Iv~~cvaG~aAliva~~cW~Rlq 225 (341)
T PF06809_consen 200 LVLIVVCCVAGAAALIVAGYCWYRLQ 225 (341)
T ss_pred eehhHHHHHHHHHHHHHhhheEEEec
Confidence 33334444444433333 34444433
No 136
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=32.33 E-value=41 Score=32.98 Aligned_cols=24 Identities=8% Similarity=0.205 Sum_probs=13.5
Q ss_pred ccceeeeehhhhhHHHHHHHHhhh
Q 046668 329 EVNWFYVSLALGFVVGFWFVMGPL 352 (381)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~ 352 (381)
...|+++++++.+++++++++++.
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~ 290 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILY 290 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHH
Confidence 346777777666555544444433
No 137
>PHA03265 envelope glycoprotein D; Provisional
Probab=31.35 E-value=41 Score=30.25 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=8.8
Q ss_pred HHHHHHHHhhhhhccchhhH
Q 046668 342 VVGFWFVMGPLFVSRKWRSM 361 (381)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~ 361 (381)
+++++++-+++++++|+|+.
T Consensus 358 i~glv~vg~il~~~~rr~k~ 377 (402)
T PHA03265 358 IAGLVLVGVILYVCLRRKKE 377 (402)
T ss_pred hhhhhhhhHHHHHHhhhhhh
Confidence 33344444445555444443
No 138
>PF15050 SCIMP: SCIMP protein
Probab=31.05 E-value=39 Score=25.09 Aligned_cols=25 Identities=16% Similarity=-0.011 Sum_probs=12.5
Q ss_pred ehhhhhHHHHHHHHhhhhhccchhh
Q 046668 336 SLALGFVVGFWFVMGPLFVSRKWRS 360 (381)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (381)
.++++++++++.+...++.++-.|.
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR~ 33 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCRW 33 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455444445555555555543
No 139
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=30.94 E-value=37 Score=27.60 Aligned_cols=19 Identities=16% Similarity=0.387 Sum_probs=11.5
Q ss_pred eeeehhhhhHHHHHHHHhh
Q 046668 333 FYVSLALGFVVGFWFVMGP 351 (381)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~ 351 (381)
..+.+++++++++++++++
T Consensus 76 ~~~~iivgvi~~Vi~Iv~~ 94 (179)
T PF13908_consen 76 FITGIIVGVICGVIAIVVL 94 (179)
T ss_pred ceeeeeeehhhHHHHHHHh
Confidence 4566777777766655443
No 140
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=30.68 E-value=61 Score=26.94 Aligned_cols=7 Identities=14% Similarity=0.230 Sum_probs=3.1
Q ss_pred eeeehhh
Q 046668 333 FYVSLAL 339 (381)
Q Consensus 333 ~~~~~~~ 339 (381)
.+|++++
T Consensus 101 ~lI~lv~ 107 (202)
T PF06365_consen 101 TLIALVT 107 (202)
T ss_pred EEEehHH
Confidence 4444443
No 141
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=30.38 E-value=25 Score=29.26 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=10.4
Q ss_pred eeeehhhhhHHHHHHHHhhhhhcc
Q 046668 333 FYVSLALGFVVGFWFVMGPLFVSR 356 (381)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~ 356 (381)
-++.+++|++.+++.+++++++..
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v 58 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVV 58 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHH
Confidence 444444444444444443333333
No 142
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=28.42 E-value=1.2e+02 Score=21.82 Aligned_cols=6 Identities=17% Similarity=0.307 Sum_probs=2.3
Q ss_pred eeeehh
Q 046668 333 FYVSLA 338 (381)
Q Consensus 333 ~~~~~~ 338 (381)
+.++++
T Consensus 71 i~vg~~ 76 (96)
T PTZ00382 71 ISVAVV 76 (96)
T ss_pred EEeehh
Confidence 333333
No 143
>PHA03281 envelope glycoprotein E; Provisional
Probab=28.17 E-value=53 Score=31.51 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=12.9
Q ss_pred eeeeehhhhhHHHHHHHH--hhhhhccchhh
Q 046668 332 WFYVSLALGFVVGFWFVM--GPLFVSRKWRS 360 (381)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 360 (381)
..+.++..++++++++.+ +.+|..+++|+
T Consensus 554 ~~y~~l~~~~a~~~ll~l~~~~~c~~~~~~~ 584 (642)
T PHA03281 554 KRYAAITGGFAALALLCLAIALICTAKKFGH 584 (642)
T ss_pred EeehhhhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555544443333 33444444443
No 144
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=27.96 E-value=20 Score=33.96 Aligned_cols=26 Identities=12% Similarity=-0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhccchhhHHHHHHH
Q 046668 342 VVGFWFVMGPLFVSRKWRSMYYHFLA 367 (381)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (381)
++++++++++.++....+++.++..+
T Consensus 361 vavlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 361 VAVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHhheeeeehhcccccc
Confidence 44444555667777777777777777
No 145
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=27.57 E-value=33 Score=23.88 Aligned_cols=7 Identities=14% Similarity=0.264 Sum_probs=2.7
Q ss_pred ccchhhH
Q 046668 355 SRKWRSM 361 (381)
Q Consensus 355 ~~~~~~~ 361 (381)
+++++|+
T Consensus 55 C~kRkrs 61 (94)
T PF05393_consen 55 CKKRKRS 61 (94)
T ss_pred HHHhhhc
Confidence 3333333
No 146
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.57 E-value=34 Score=25.84 Aligned_cols=12 Identities=0% Similarity=-0.056 Sum_probs=4.7
Q ss_pred HHHhhhhhccch
Q 046668 347 FVMGPLFVSRKW 358 (381)
Q Consensus 347 ~~~~~~~~~~~~ 358 (381)
+++.+++.+++.
T Consensus 82 lli~y~irR~~K 93 (122)
T PF01102_consen 82 LLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHS-
T ss_pred HHHHHHHHHHhc
Confidence 334444444443
No 147
>COG1470 Predicted membrane protein [Function unknown]
Probab=27.14 E-value=35 Score=32.10 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=19.8
Q ss_pred eehhhhhHHHHHHHHhhhhhccchhhH
Q 046668 335 VSLALGFVVGFWFVMGPLFVSRKWRSM 361 (381)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (381)
.+..+|++++++++++++++.||+.||
T Consensus 487 ~st~iGI~Ii~~~v~~L~fviRK~GRR 513 (513)
T COG1470 487 TSTYIGIAIIVLVVLGLIFVIRKFGRR 513 (513)
T ss_pred cchhhhHHHHHHHHHHHHhhhHHhcCC
Confidence 456777777777777878888877664
No 148
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=27.14 E-value=92 Score=18.69 Aligned_cols=21 Identities=29% Similarity=0.162 Sum_probs=9.0
Q ss_pred HhhhhhccchhhHHHHHHHHh
Q 046668 349 MGPLFVSRKWRSMYYHFLARL 369 (381)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~ 369 (381)
++.++.....+++...-+.+.
T Consensus 20 ~~li~~~~~~~r~~~~~l~~~ 40 (45)
T TIGR03141 20 AGLILWSLLDRRRLLRELRRL 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433
No 149
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=26.81 E-value=43 Score=23.13 Aligned_cols=10 Identities=10% Similarity=0.504 Sum_probs=4.9
Q ss_pred hhhhhccchh
Q 046668 350 GPLFVSRKWR 359 (381)
Q Consensus 350 ~~~~~~~~~~ 359 (381)
++++++.|++
T Consensus 35 ~vvL~C~r~~ 44 (87)
T PF11980_consen 35 GVVLYCHRFH 44 (87)
T ss_pred HHHHhhhhhc
Confidence 4455555543
No 150
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=26.54 E-value=1.8e+02 Score=18.71 Aligned_cols=34 Identities=15% Similarity=0.004 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHhhhhhccchhhHHHHHHHHhh
Q 046668 337 LALGFVVGFWFVMGPLFVSRKWRSMYYHFLARLG 370 (381)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (381)
+++|+.++++...+-=+..+.-|++-..|++.+.
T Consensus 20 I~iG~~LGL~AG~~WKmhHWn~qrkt~~fY~~Le 53 (63)
T PLN03155 20 LCIGLTLGLAAGGLWKMHHWNEQRKTRSFYDLLE 53 (63)
T ss_pred HHHHhHHHHhhhhHHHHhhhhhHHHHHHHHHHHh
Confidence 4556666554333333333344566666666654
No 151
>PHA03271 envelope glycoprotein C; Provisional
Probab=26.35 E-value=61 Score=30.03 Aligned_cols=7 Identities=14% Similarity=0.235 Sum_probs=3.5
Q ss_pred CCCCCCC
Q 046668 299 PLPNNCF 305 (381)
Q Consensus 299 ~~~~~c~ 305 (381)
|.++.|.
T Consensus 421 pveYTCr 427 (490)
T PHA03271 421 KTKYTCR 427 (490)
T ss_pred ceeEEEE
Confidence 4445563
No 152
>PF15345 TMEM51: Transmembrane protein 51
Probab=25.79 E-value=1.8e+02 Score=24.68 Aligned_cols=8 Identities=13% Similarity=-0.214 Sum_probs=3.0
Q ss_pred Hhhhhhcc
Q 046668 349 MGPLFVSR 356 (381)
Q Consensus 349 ~~~~~~~~ 356 (381)
.+++.++.
T Consensus 75 SICL~IR~ 82 (233)
T PF15345_consen 75 SICLSIRD 82 (233)
T ss_pred HHHHHHHH
Confidence 33333433
No 153
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=25.64 E-value=1.6e+02 Score=34.35 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=10.7
Q ss_pred eeeCCCCcceecCCCC
Q 046668 264 RLKLSNNNLSGKIPLS 279 (381)
Q Consensus 264 ~L~l~~N~l~~~~~~~ 279 (381)
+-...+|-+.|.||..
T Consensus 3916 tCip~~n~f~CnC~~g 3931 (4289)
T KOG1219|consen 3916 TCIPFYNGFLCNCPNG 3931 (4289)
T ss_pred EEEecCCCeeEeCCCC
Confidence 4556677777777765
No 154
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=24.93 E-value=27 Score=29.07 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=10.6
Q ss_pred HHHHHHHhhhhhccchhhHHHH
Q 046668 343 VGFWFVMGPLFVSRKWRSMYYH 364 (381)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~ 364 (381)
+++++++++-.++|+.+.+|++
T Consensus 196 i~~i~vv~i~~irR~i~lkYrY 217 (226)
T PHA02662 196 VTVLGVVAVSLLRRALRIRFRY 217 (226)
T ss_pred HHHHHHHHHHHHHHHhheeeee
Confidence 3333344444555655555543
No 155
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=24.80 E-value=1.3e+02 Score=18.17 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=12.9
Q ss_pred hHHHHHHHHhhhhhccchhhHHHHHHHHh
Q 046668 341 FVVGFWFVMGPLFVSRKWRSMYYHFLARL 369 (381)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (381)
..++++++++.++.-...+++..+-+.+.
T Consensus 11 Yg~t~~~l~~l~~~~~~~~r~~~~~l~~~ 39 (46)
T PF04995_consen 11 YGVTALVLAGLIVWSLRRRRRLRKELKRL 39 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444445555555443
No 156
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=24.78 E-value=24 Score=31.13 Aligned_cols=22 Identities=5% Similarity=-0.037 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhhccchhhHH
Q 046668 341 FVVGFWFVMGPLFVSRKWRSMY 362 (381)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~ 362 (381)
+++++++++++.+.++|..+..
T Consensus 158 iLLIA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 158 ILLIAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHhhhhhhccccc
Confidence 3344445556666676665543
No 157
>TIGR03154 sulfolob_CbsA cytochrome b558/566, subunit A. Members of this protein family are CbsA, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=23.67 E-value=83 Score=28.29 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=11.1
Q ss_pred eeehhhhhHHHHHHHHhhhhhcc
Q 046668 334 YVSLALGFVVGFWFVMGPLFVSR 356 (381)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~ 356 (381)
+.+.++|+++++++++.+..++|
T Consensus 442 IlwTVaGVvIAiVALV~l~~V~r 464 (465)
T TIGR03154 442 LYVTIIGVVIAIVALVILYVVFR 464 (465)
T ss_pred EEEEeehhHHHHHHHhheeEEec
Confidence 34445555555544444444444
No 158
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=23.21 E-value=1.2e+02 Score=18.45 Aligned_cols=18 Identities=11% Similarity=0.287 Sum_probs=7.8
Q ss_pred HHHHhhhhhccchhhHHH
Q 046668 346 WFVMGPLFVSRKWRSMYY 363 (381)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~ 363 (381)
+++++.++-.+++-++++
T Consensus 13 lv~~gy~~hmkrycrafr 30 (54)
T PF13260_consen 13 LVVVGYFCHMKRYCRAFR 30 (54)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444444444443
No 159
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=22.86 E-value=90 Score=20.50 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=5.3
Q ss_pred hhhccchhhHHH
Q 046668 352 LFVSRKWRSMYY 363 (381)
Q Consensus 352 ~~~~~~~~~~~~ 363 (381)
+++.+++-++|.
T Consensus 15 ff~ar~~~~k~l 26 (64)
T PF03672_consen 15 FFIARKYMEKQL 26 (64)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 160
>PRK11677 hypothetical protein; Provisional
Probab=22.70 E-value=61 Score=24.96 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=7.6
Q ss_pred eehhhhhHHHHHHHHh
Q 046668 335 VSLALGFVVGFWFVMG 350 (381)
Q Consensus 335 ~~~~~~~~~~~~~~~~ 350 (381)
+.+++++++|+++.++
T Consensus 4 ~~a~i~livG~iiG~~ 19 (134)
T PRK11677 4 EYALIGLVVGIIIGAV 19 (134)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555544443
No 161
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=22.52 E-value=56 Score=20.69 Aligned_cols=20 Identities=5% Similarity=0.173 Sum_probs=8.7
Q ss_pred eehhhhhHHHHHHHHhhhhh
Q 046668 335 VSLALGFVVGFWFVMGPLFV 354 (381)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~ 354 (381)
..+++.+++++++++++++|
T Consensus 31 ~tVVlP~l~~~~~~Ivv~vy 50 (56)
T PF15012_consen 31 FTVVLPTLAAVFLFIVVFVY 50 (56)
T ss_pred eeEehhHHHHHHHHHhheeE
Confidence 33444444444444444433
No 162
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.02 E-value=79 Score=27.96 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=6.9
Q ss_pred eeeehhhhhHHHHHHHH
Q 046668 333 FYVSLALGFVVGFWFVM 349 (381)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ 349 (381)
+.+++++++.+.+++++
T Consensus 230 VlIslAiALG~v~ll~l 246 (281)
T PF12768_consen 230 VLISLAIALGTVFLLVL 246 (281)
T ss_pred EEEehHHHHHHHHHHHH
Confidence 44444444433333333
No 163
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=20.35 E-value=79 Score=18.96 Aligned_cols=19 Identities=26% Similarity=0.598 Sum_probs=8.5
Q ss_pred hhhhhHHHHHHHHhhhhhc
Q 046668 337 LALGFVVGFWFVMGPLFVS 355 (381)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~ 355 (381)
++.|+++.+++..++++++
T Consensus 11 ~~F~~lIC~Fl~~~~~F~~ 29 (54)
T PF06716_consen 11 LAFGFLICLFLFCLVVFIW 29 (54)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555444444444433
No 164
>PHA02955 hypothetical protein; Provisional
Probab=20.24 E-value=35 Score=28.37 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=6.7
Q ss_pred hhhhccchhhHHH
Q 046668 351 PLFVSRKWRSMYY 363 (381)
Q Consensus 351 ~~~~~~~~~~~~~ 363 (381)
+.+++|+.|.+|+
T Consensus 196 l~yikR~i~~ky~ 208 (213)
T PHA02955 196 LGYIYRTVRIKYI 208 (213)
T ss_pred HHHHHHHheeeEe
Confidence 4455555555554
No 165
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=20.07 E-value=99 Score=29.42 Aligned_cols=109 Identities=22% Similarity=0.178 Sum_probs=60.6
Q ss_pred CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccc---cCCCCCCEEeCcCCcCcccCChhHHh--cCCC
Q 046668 24 LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASF---QNCTKLVMLDIGENEFVGNVPTWIGI--RFSS 98 (381)
Q Consensus 24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~ 98 (381)
+.+++++++.|.+....|..+.. .---+.++.|..+...-..+ ..-..+.+++++.|.....+|..+-. .-..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~--p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQ--PGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccC--CCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 45677888888776555554432 11115555555442111100 11134778889888887777754431 1234
Q ss_pred CcEEEccccccc---ccCCcCccCCCCCCEEeccCCcCC
Q 046668 99 LMILNLRSNKFR---GVLPNQLCGLTSLHVLDLADNHLS 134 (381)
Q Consensus 99 L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~ 134 (381)
++.++.+...+. ...+-.+...++++..+++.|...
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 677777766554 112233445567888888877654
No 166
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=20.03 E-value=89 Score=22.01 Aligned_cols=14 Identities=0% Similarity=-0.202 Sum_probs=5.3
Q ss_pred HHHHHHHhhhhhcc
Q 046668 343 VGFWFVMGPLFVSR 356 (381)
Q Consensus 343 ~~~~~~~~~~~~~~ 356 (381)
++++++++++++|+
T Consensus 11 ~~v~~~i~~y~~~k 24 (87)
T PF10883_consen 11 GAVVALILAYLWWK 24 (87)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333334443
Done!