Query 046668
Match_columns 381
No_of_seqs 307 out of 3926
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 05:05:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.2E-41 1.4E-45 337.3 25.0 303 1-305 395-749 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 3.7E-38 1.3E-42 283.0 19.5 256 2-304 52-312 (313)
3 3rgz_A Protein brassinosteroid 100.0 2E-36 7E-41 303.3 23.6 300 1-301 344-722 (768)
4 2id5_A Lingo-1, leucine rich r 100.0 2.3E-35 8E-40 280.5 21.5 278 1-279 33-339 (477)
5 3v47_A TOLL-like receptor 5B a 100.0 4.6E-35 1.6E-39 276.9 21.2 295 1-295 31-407 (455)
6 3j0a_A TOLL-like receptor 5; m 100.0 5.7E-34 2E-38 288.4 23.7 85 1-85 74-161 (844)
7 3v47_A TOLL-like receptor 5B a 100.0 1.5E-33 5.1E-38 266.5 20.5 281 1-281 55-416 (455)
8 1ogq_A PGIP-2, polygalacturona 100.0 9.9E-34 3.4E-38 254.2 16.3 230 1-277 77-308 (313)
9 3o6n_A APL1; leucine-rich repe 100.0 7.9E-33 2.7E-37 256.3 21.4 287 1-295 46-351 (390)
10 3t6q_A CD180 antigen; protein- 100.0 4.5E-32 1.6E-36 265.5 23.0 292 2-295 256-559 (606)
11 3t6q_A CD180 antigen; protein- 100.0 4.4E-32 1.5E-36 265.5 22.8 281 17-300 245-540 (606)
12 3oja_B Anopheles plasmodium-re 100.0 3E-32 1E-36 265.7 20.8 288 1-296 52-358 (597)
13 3zyi_A Leucine-rich repeat-con 100.0 1.5E-31 5.2E-36 252.4 24.6 252 3-279 57-309 (452)
14 3zyj_A Leucine-rich repeat-con 100.0 1.5E-31 5E-36 251.6 24.1 252 3-279 46-298 (440)
15 3vq2_A TLR4, TOLL-like recepto 100.0 7.9E-32 2.7E-36 263.8 22.4 113 184-296 420-534 (606)
16 4eco_A Uncharacterized protein 100.0 3.4E-32 1.2E-36 266.9 19.7 158 1-162 207-394 (636)
17 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-31 9.5E-36 263.3 25.9 278 1-278 330-627 (680)
18 1xku_A Decorin; proteoglycan, 100.0 3.8E-31 1.3E-35 239.4 24.4 264 2-295 33-305 (330)
19 2id5_A Lingo-1, leucine rich r 100.0 1.6E-31 5.4E-36 254.1 21.7 289 3-295 14-332 (477)
20 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-31 6E-36 270.2 22.8 274 1-274 25-352 (844)
21 2ft3_A Biglycan; proteoglycan, 100.0 6.1E-31 2.1E-35 238.2 24.1 264 2-296 35-307 (332)
22 4eco_A Uncharacterized protein 100.0 3E-32 1E-36 267.3 16.7 289 1-296 250-579 (636)
23 2z81_A CD282 antigen, TOLL-lik 100.0 7.1E-32 2.4E-36 261.0 17.8 153 1-154 27-181 (549)
24 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-31 4.5E-36 237.4 18.0 243 3-293 14-258 (285)
25 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-31 8.2E-36 260.3 21.4 146 1-147 33-179 (606)
26 4g8a_A TOLL-like receptor 4; l 100.0 7.3E-31 2.5E-35 258.1 23.4 140 1-141 53-193 (635)
27 1ziw_A TOLL-like receptor 3; i 100.0 9.2E-31 3.1E-35 259.6 24.3 269 1-270 26-306 (680)
28 1xku_A Decorin; proteoglycan, 100.0 2.8E-30 9.5E-35 233.7 25.2 266 1-293 53-329 (330)
29 2z63_A TOLL-like receptor 4, v 100.0 6.7E-31 2.3E-35 255.3 22.4 130 2-132 30-160 (570)
30 2z7x_B TOLL-like receptor 1, v 100.0 6.4E-31 2.2E-35 252.6 21.6 290 1-298 22-436 (520)
31 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-30 6.4E-35 235.0 23.4 265 1-293 55-330 (332)
32 2z66_A Variable lymphocyte rec 100.0 3.3E-31 1.1E-35 237.3 18.2 254 3-279 10-267 (306)
33 4ecn_A Leucine-rich repeat pro 100.0 5.1E-31 1.8E-35 263.6 21.3 157 1-162 449-636 (876)
34 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.7E-30 9.2E-35 250.5 25.5 289 1-299 53-489 (562)
35 4fcg_A Uncharacterized protein 100.0 4.9E-31 1.7E-35 238.0 18.4 223 2-272 83-313 (328)
36 2z80_A TOLL-like receptor 2, v 100.0 1.8E-31 6.2E-36 243.8 15.3 257 2-278 54-319 (353)
37 4ecn_A Leucine-rich repeat pro 100.0 1.9E-31 6.6E-36 266.7 15.3 286 1-295 492-818 (876)
38 3o6n_A APL1; leucine-rich repe 100.0 2.5E-30 8.4E-35 239.5 21.5 279 1-293 70-371 (390)
39 2z63_A TOLL-like receptor 4, v 100.0 2.5E-30 8.4E-35 251.3 21.4 138 1-139 53-195 (570)
40 3oja_B Anopheles plasmodium-re 100.0 2.9E-30 9.9E-35 251.7 21.2 284 1-298 76-383 (597)
41 2z7x_B TOLL-like receptor 1, v 100.0 9.1E-30 3.1E-34 244.6 24.1 286 1-297 46-458 (520)
42 2z81_A CD282 antigen, TOLL-lik 100.0 7.8E-31 2.7E-35 253.7 16.2 271 1-273 51-423 (549)
43 4g8a_A TOLL-like receptor 4; l 100.0 5.4E-30 1.8E-34 251.9 20.9 113 1-114 77-190 (635)
44 4fmz_A Internalin; leucine ric 100.0 4.5E-29 1.5E-33 227.4 24.5 278 1-298 45-326 (347)
45 1ozn_A Reticulon 4 receptor; N 100.0 3.4E-30 1.2E-34 228.3 16.6 234 1-279 33-267 (285)
46 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-29 6.8E-34 244.4 23.1 145 3-157 34-181 (562)
47 2z66_A Variable lymphocyte rec 100.0 1.5E-29 5.1E-34 226.5 19.5 247 26-296 9-261 (306)
48 4fcg_A Uncharacterized protein 100.0 2E-29 6.9E-34 227.5 18.2 222 23-293 80-311 (328)
49 4fmz_A Internalin; leucine ric 100.0 3.3E-28 1.1E-32 221.7 24.0 276 1-295 67-345 (347)
50 2z62_A TOLL-like receptor 4, v 100.0 3.3E-28 1.1E-32 214.4 22.3 229 4-280 11-244 (276)
51 2z80_A TOLL-like receptor 2, v 100.0 1.3E-28 4.3E-33 224.9 19.7 270 4-297 35-315 (353)
52 1o6v_A Internalin A; bacterial 100.0 6.5E-28 2.2E-32 228.4 23.6 283 1-301 69-393 (466)
53 1o6v_A Internalin A; bacterial 100.0 4E-28 1.4E-32 229.8 21.3 256 1-275 47-324 (466)
54 3oja_A Leucine-rich immune mol 100.0 2.2E-29 7.4E-34 239.1 12.5 219 23-275 33-252 (487)
55 3zyi_A Leucine-rich repeat-con 100.0 3.9E-28 1.3E-32 229.0 21.0 227 1-249 76-303 (452)
56 3o53_A Protein LRIM1, AGAP0063 100.0 1.1E-29 3.8E-34 228.3 9.9 264 2-298 12-278 (317)
57 3zyj_A Leucine-rich repeat-con 100.0 4.8E-28 1.6E-32 227.6 20.5 227 1-249 65-292 (440)
58 2o6q_A Variable lymphocyte rec 100.0 3.5E-27 1.2E-31 207.1 21.9 209 24-279 16-224 (270)
59 1wwl_A Monocyte differentiatio 100.0 8.8E-30 3E-34 228.5 5.0 242 2-296 45-309 (312)
60 3o53_A Protein LRIM1, AGAP0063 100.0 2.2E-28 7.5E-33 219.9 13.6 244 1-278 35-281 (317)
61 3bz5_A Internalin-J, INLJ; leu 100.0 9.6E-27 3.3E-31 219.1 24.7 274 1-299 43-334 (457)
62 1wwl_A Monocyte differentiatio 99.9 5.4E-29 1.9E-33 223.3 6.1 226 2-274 65-310 (312)
63 1p9a_G Platelet glycoprotein I 99.9 1.2E-26 4E-31 205.6 20.4 208 20-278 6-213 (290)
64 2z62_A TOLL-like receptor 4, v 99.9 1.1E-26 3.9E-31 204.6 17.7 210 1-252 29-240 (276)
65 2o6q_A Variable lymphocyte rec 99.9 7.3E-26 2.5E-30 198.7 21.5 202 2-250 18-219 (270)
66 3bz5_A Internalin-J, INLJ; leu 99.9 5.7E-26 2E-30 213.8 21.6 250 1-274 65-353 (457)
67 3oja_A Leucine-rich immune mol 99.9 1.4E-26 4.9E-31 219.7 15.4 219 45-296 31-250 (487)
68 1jl5_A Outer protein YOPM; leu 99.9 6E-25 2E-29 206.7 23.7 122 24-160 131-252 (454)
69 1jl5_A Outer protein YOPM; leu 99.9 7.8E-26 2.7E-30 212.7 14.7 264 1-297 12-291 (454)
70 1p9a_G Platelet glycoprotein I 99.9 7.7E-25 2.6E-29 193.9 19.9 198 1-249 11-208 (290)
71 3rfs_A Internalin B, repeat mo 99.9 2.3E-25 7.9E-30 195.7 16.1 217 6-279 25-241 (272)
72 3rfs_A Internalin B, repeat mo 99.9 9.7E-26 3.3E-30 198.1 12.7 206 23-278 18-223 (272)
73 3g06_A SSPH2 (leucine-rich rep 99.9 5.5E-24 1.9E-28 206.3 22.4 242 2-277 42-301 (622)
74 2xwt_C Thyrotropin receptor; s 99.9 8.3E-25 2.8E-29 188.4 14.4 206 12-271 23-237 (239)
75 2xwt_C Thyrotropin receptor; s 99.9 2E-24 6.7E-29 186.1 16.1 209 35-293 22-236 (239)
76 2ca6_A RAN GTPase-activating p 99.9 4.4E-26 1.5E-30 210.7 5.9 247 15-277 23-320 (386)
77 4glp_A Monocyte differentiatio 99.9 2.2E-25 7.6E-30 199.6 10.0 227 2-274 66-308 (310)
78 3m19_A Variable lymphocyte rec 99.9 1.4E-24 4.7E-29 188.4 14.6 211 24-305 14-230 (251)
79 1z7x_W Ribonuclease inhibitor; 99.9 8.1E-27 2.8E-31 220.7 -0.9 295 1-296 57-411 (461)
80 4glp_A Monocyte differentiatio 99.9 6.4E-25 2.2E-29 196.6 11.2 228 22-297 62-308 (310)
81 3goz_A Leucine-rich repeat-con 99.9 1.6E-25 5.4E-30 205.0 6.6 257 4-275 2-299 (362)
82 3m19_A Variable lymphocyte rec 99.9 1.4E-23 4.8E-28 182.1 18.3 178 2-226 16-193 (251)
83 2ast_B S-phase kinase-associat 99.9 3.2E-25 1.1E-29 200.9 7.9 222 2-270 49-282 (336)
84 1h6u_A Internalin H; cell adhe 99.9 8.9E-24 3E-28 188.9 16.8 195 20-274 37-231 (308)
85 2ca6_A RAN GTPase-activating p 99.9 1.3E-25 4.4E-30 207.5 1.9 254 30-299 15-319 (386)
86 1z7x_W Ribonuclease inhibitor; 99.9 2.9E-25 1E-29 210.0 4.2 274 1-275 86-413 (461)
87 3goz_A Leucine-rich repeat-con 99.9 7.2E-25 2.5E-29 200.6 6.6 241 1-256 23-304 (362)
88 1h6u_A Internalin H; cell adhe 99.9 4.4E-23 1.5E-27 184.3 18.0 190 1-250 42-231 (308)
89 4ay9_X Follicle-stimulating ho 99.9 5.5E-22 1.9E-26 180.5 17.1 239 4-270 13-256 (350)
90 2ast_B S-phase kinase-associat 99.9 1.6E-23 5.6E-28 189.7 6.7 230 1-279 71-312 (336)
91 4ay9_X Follicle-stimulating ho 99.9 6.7E-22 2.3E-26 180.0 16.6 222 1-247 31-257 (350)
92 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-21 5.3E-26 189.1 20.0 229 1-260 62-308 (622)
93 2o6s_A Variable lymphocyte rec 99.9 1.2E-21 3.9E-26 165.0 15.2 161 49-260 29-189 (208)
94 2o6s_A Variable lymphocyte rec 99.9 1.1E-21 3.8E-26 165.1 13.0 181 3-237 10-190 (208)
95 3cvr_A Invasion plasmid antige 99.9 3.2E-21 1.1E-25 184.8 17.5 95 25-135 60-154 (571)
96 2v70_A SLIT-2, SLIT homolog 2 99.9 3.7E-22 1.3E-26 169.4 9.3 157 76-279 15-172 (220)
97 2xot_A Amphoterin-induced prot 99.9 4E-21 1.4E-25 175.6 15.1 107 26-136 20-127 (361)
98 2v9t_B SLIT homolog 2 protein 99.9 5.7E-21 1.9E-25 162.0 14.3 157 75-278 14-170 (220)
99 3cvr_A Invasion plasmid antige 99.9 3.2E-21 1.1E-25 184.8 13.9 188 1-260 60-254 (571)
100 2xot_A Amphoterin-induced prot 99.8 1.5E-20 5E-25 171.8 15.7 179 3-225 21-202 (361)
101 1h6t_A Internalin B; cell adhe 99.8 8.7E-21 3E-25 168.0 13.1 171 46-274 44-214 (291)
102 3e6j_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 157.9 15.0 157 74-278 21-177 (229)
103 2v9t_B SLIT homolog 2 protein 99.8 5.4E-20 1.8E-24 156.0 15.4 151 3-157 14-164 (220)
104 1m9s_A Internalin B; cell inva 99.8 1.6E-20 5.6E-25 181.7 12.6 172 21-250 40-211 (605)
105 1h6t_A Internalin B; cell adhe 99.8 7.6E-20 2.6E-24 161.9 14.0 185 7-251 31-215 (291)
106 3ogk_B Coronatine-insensitive 99.8 4.2E-22 1.4E-26 194.2 -1.1 295 1-298 165-528 (592)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 3E-19 1E-23 151.4 15.2 151 3-157 14-165 (220)
108 3e6j_A Variable lymphocyte rec 99.8 2.8E-19 9.7E-24 152.6 14.9 150 3-157 22-171 (229)
109 1m9s_A Internalin B; cell inva 99.8 2.4E-19 8.2E-24 173.6 15.9 169 1-227 44-212 (605)
110 3ogk_B Coronatine-insensitive 99.8 1.1E-20 3.9E-25 184.1 1.5 273 1-275 193-528 (592)
111 4ezg_A Putative uncharacterize 99.8 8.1E-19 2.8E-23 146.2 12.3 80 190-273 114-194 (197)
112 1xeu_A Internalin C; cellular 99.8 1.4E-19 4.8E-24 157.7 7.8 170 22-250 17-186 (263)
113 4ezg_A Putative uncharacterize 99.8 9.8E-19 3.4E-23 145.7 12.6 154 45-250 41-195 (197)
114 1xeu_A Internalin C; cellular 99.8 3E-19 1E-23 155.7 8.7 171 46-275 17-187 (263)
115 1w8a_A SLIT protein; signaling 99.8 4.1E-19 1.4E-23 147.2 9.0 92 188-279 54-145 (192)
116 1dce_A Protein (RAB geranylger 99.8 2.4E-21 8.4E-26 186.4 -5.4 178 45-278 346-551 (567)
117 2ell_A Acidic leucine-rich nuc 99.8 2.1E-18 7.1E-23 139.9 10.4 129 2-134 26-160 (168)
118 4b8c_D Glucose-repressible alc 99.8 3.8E-19 1.3E-23 176.3 7.1 180 40-273 216-404 (727)
119 4b8c_D Glucose-repressible alc 99.8 2.5E-19 8.5E-24 177.6 4.4 137 3-144 194-339 (727)
120 1w8a_A SLIT protein; signaling 99.7 9.8E-18 3.4E-22 138.9 12.9 132 3-138 11-143 (192)
121 1dce_A Protein (RAB geranylger 99.7 8E-20 2.7E-24 175.9 -0.8 197 21-267 346-567 (567)
122 2je0_A Acidic leucine-rich nuc 99.7 4.7E-18 1.6E-22 134.9 9.0 126 24-152 17-147 (149)
123 2p1m_B Transport inhibitor res 99.7 2.2E-19 7.4E-24 175.1 0.7 199 95-295 287-518 (594)
124 2wfh_A SLIT homolog 2 protein 99.7 6.8E-18 2.3E-22 139.9 9.3 93 187-279 53-145 (193)
125 3sb4_A Hypothetical leucine ri 99.7 1.6E-17 5.6E-22 149.6 12.4 220 1-267 50-328 (329)
126 3sb4_A Hypothetical leucine ri 99.7 5.3E-18 1.8E-22 152.9 7.9 223 23-275 48-312 (329)
127 2wfh_A SLIT homolog 2 protein 99.7 8.6E-17 2.9E-21 133.2 12.8 127 3-134 13-139 (193)
128 2o6r_A Variable lymphocyte rec 99.7 1.6E-16 5.4E-21 129.9 13.4 133 2-138 9-141 (177)
129 2ell_A Acidic leucine-rich nuc 99.7 8.4E-17 2.9E-21 130.3 11.1 138 22-162 22-164 (168)
130 2je0_A Acidic leucine-rich nuc 99.7 8.6E-17 2.9E-21 127.5 9.1 127 1-130 18-149 (149)
131 2o6r_A Variable lymphocyte rec 99.7 5.3E-16 1.8E-20 126.7 12.5 89 190-278 54-142 (177)
132 1a9n_A U2A', U2A'; complex (nu 99.7 3.3E-16 1.1E-20 127.8 10.8 124 2-132 21-151 (176)
133 2p1m_B Transport inhibitor res 99.7 1.2E-17 4.3E-22 162.6 2.3 59 211-269 371-441 (594)
134 4fdw_A Leucine rich hypothetic 99.7 4E-15 1.4E-19 137.1 18.9 240 2-274 115-359 (401)
135 4fdw_A Leucine rich hypothetic 99.6 1.3E-14 4.4E-19 133.7 19.8 240 21-294 110-356 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.6 2.8E-15 9.7E-20 122.2 9.5 133 18-157 13-152 (176)
137 3g39_A Variable lymphocyte rec 99.6 7.2E-15 2.5E-19 119.0 10.8 92 188-279 30-121 (170)
138 1ds9_A Outer arm dynein; leuci 99.6 9.8E-17 3.4E-21 133.6 -1.3 153 70-273 16-185 (198)
139 1ds9_A Outer arm dynein; leuci 99.6 9.9E-18 3.4E-22 139.7 -7.9 144 2-151 20-180 (198)
140 3g39_A Variable lymphocyte rec 99.6 1.9E-14 6.5E-19 116.5 11.2 107 25-135 10-116 (170)
141 2r9u_A Variable lymphocyte rec 99.5 3.2E-14 1.1E-18 115.6 11.2 105 26-134 14-118 (174)
142 2r9u_A Variable lymphocyte rec 99.5 5.4E-14 1.9E-18 114.2 11.2 105 3-111 15-119 (174)
143 3un9_A NLR family member X1; l 99.5 4.1E-15 1.4E-19 135.7 -0.5 84 190-273 157-252 (372)
144 3un9_A NLR family member X1; l 99.4 1.2E-14 4.1E-19 132.6 -2.2 188 23-249 71-283 (372)
145 2ifg_A High affinity nerve gro 99.4 1.1E-12 3.9E-17 118.8 10.5 103 4-110 12-116 (347)
146 4fs7_A Uncharacterized protein 99.3 3.3E-11 1.1E-15 111.1 17.4 137 12-152 59-215 (394)
147 2ifg_A High affinity nerve gro 99.3 8.5E-12 2.9E-16 113.0 11.5 105 27-135 11-117 (347)
148 4fs7_A Uncharacterized protein 99.2 2.7E-10 9.4E-15 104.9 17.2 125 2-131 73-218 (394)
149 4gt6_A Cell surface protein; l 99.2 1.7E-09 5.7E-14 99.7 19.1 82 187-271 287-368 (394)
150 2ra8_A Uncharacterized protein 99.2 5.3E-11 1.8E-15 107.7 8.3 164 66-271 166-341 (362)
151 2ra8_A Uncharacterized protein 99.1 6.1E-11 2.1E-15 107.3 6.3 63 211-273 251-320 (362)
152 4gt6_A Cell surface protein; l 99.1 4.5E-09 1.5E-13 96.8 16.5 261 2-272 66-390 (394)
153 4h09_A Hypothetical leucine ri 98.8 2.8E-07 9.5E-12 84.2 19.3 82 187-270 239-320 (379)
154 3rw6_A Nuclear RNA export fact 98.7 8.8E-09 3E-13 88.5 3.1 79 46-127 168-257 (267)
155 1io0_A Tropomodulin; LRR prote 98.6 4.9E-09 1.7E-13 85.7 1.3 116 18-134 30-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 7.8E-09 2.7E-13 84.5 2.2 109 1-110 37-164 (185)
157 3rw6_A Nuclear RNA export fact 98.5 2.6E-07 9E-12 79.3 7.5 67 209-277 167-237 (267)
158 4h09_A Hypothetical leucine ri 98.4 1.4E-05 4.7E-10 72.9 18.4 240 2-270 93-343 (379)
159 3e4g_A ATP synthase subunit S, 98.3 8E-08 2.7E-12 76.7 0.7 92 16-108 53-150 (176)
160 3e4g_A ATP synthase subunit S, 98.2 4.5E-07 1.5E-11 72.3 2.6 84 188-271 61-150 (176)
161 3rfe_A Platelet glycoprotein I 97.8 2.6E-05 8.9E-10 59.2 6.0 63 215-279 11-74 (130)
162 3rfe_A Platelet glycoprotein I 97.4 0.00042 1.5E-08 52.4 6.7 57 27-85 11-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.0001 3.5E-09 59.8 2.7 115 20-134 37-170 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.3 8.4E-05 2.9E-09 60.3 1.9 114 41-155 34-167 (197)
165 2lz0_A Uncharacterized protein 87.1 1.7 5.8E-05 30.6 6.1 47 11-58 7-53 (100)
166 2ks1_B Epidermal growth factor 85.9 0.28 9.7E-06 28.5 1.2 19 340-358 20-38 (44)
167 2lz0_A Uncharacterized protein 84.6 1.2 4E-05 31.5 4.2 49 33-82 5-53 (100)
168 2l2t_A Receptor tyrosine-prote 84.4 0.24 8.2E-06 28.7 0.4 18 341-358 20-37 (44)
169 2jwa_A Receptor tyrosine-prote 84.2 0.31 1E-05 28.3 0.8 25 334-358 14-38 (44)
170 2k1k_A Ephrin type-A receptor 82.3 0.58 2E-05 26.3 1.4 21 334-354 13-33 (38)
171 2l9u_A Receptor tyrosine-prote 72.4 2.3 8E-05 22.7 1.9 23 337-359 12-34 (40)
172 2l6w_A Beta-type platelet-deri 57.8 2.9 0.0001 23.2 0.0 7 351-357 27-33 (39)
173 2l34_A TYRO protein tyrosine k 43.3 15 0.0005 19.7 1.9 21 335-355 10-30 (33)
174 2klu_A T-cell surface glycopro 41.4 7.7 0.00026 24.4 0.6 13 337-349 12-24 (70)
175 2llm_A Amyloid beta A4 protein 36.0 11 0.00038 21.4 0.0 17 339-355 25-41 (43)
176 2lx0_A Membrane fusion protein 25.0 31 0.0011 17.3 1.1 6 339-344 10-15 (32)
177 2jp3_A FXYD domain-containing 23.3 67 0.0023 20.3 2.6 11 352-362 35-45 (67)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.2e-41 Score=337.25 Aligned_cols=303 Identities=34% Similarity=0.560 Sum_probs=254.6
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.+++.+|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+.+.+|..+.++++|++|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 36788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccc-c
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV-Q 159 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~-~ 159 (381)
+|++.+.+|..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.++++.+... .
T Consensus 475 ~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 475 FNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp SSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred CCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 8888878887776 7888888888888888888888888888889999888888888888888888888888877654 2
Q ss_pred CCCCCCC-------cccc-------------------------------------------ceEEEEeccccchhhhccc
Q 046668 160 YPSVSTG-------KYVE-------------------------------------------DALLVLKGKAVEYNTILKL 189 (381)
Q Consensus 160 ~~~~~~~-------~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~ 189 (381)
.|..... .... .....+.+..+..+..++.
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 2221100 0000 0001222233334556788
Q ss_pred ccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCC
Q 046668 190 MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSN 269 (381)
Q Consensus 190 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 269 (381)
|+.|++++|++++.+|..++.++.|+.|+|++|.+++.+|..++.+++|++|||++|++++.+|..+..+++|++|++++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceecCCCCCCCCccCCCcccCC-CCCCCCCCCCCC
Q 046668 270 NNLSGKIPLSTQLQSFDPSSFTGN-RLCGSPLPNNCF 305 (381)
Q Consensus 270 N~l~~~~~~~~~l~~l~~~~~~~n-~l~~~~~~~~c~ 305 (381)
|+++|.+|...++.++...++.|| .+||.|.. .|.
T Consensus 714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~ 749 (768)
T 3rgz_A 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCD 749 (768)
T ss_dssp SEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCC
T ss_pred CcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCC
Confidence 999999999999999999999999 79999876 784
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.7e-38 Score=283.00 Aligned_cols=256 Identities=31% Similarity=0.570 Sum_probs=210.6
Q ss_pred ccEEEcCCCcccc--cCCccccCCCCCCEEECcC-CcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEe
Q 046668 2 IRILKLGENHFSG--EIPDCWMNWLDLLVLNLGN-NNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLD 78 (381)
Q Consensus 2 L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 78 (381)
++.|++++|.+++ .+|..|.++++|++|++++ |.+.+..|..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 5677777777777 6777777777777777774 777777777777777777777777777777777777777777777
Q ss_pred CcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCC-CCCEEeccCCcCCCCcCcccccccccccccccCCcc
Q 046668 79 IGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT-SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTD 157 (381)
Q Consensus 79 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~ 157 (381)
+++|.+.+.+|..+. .+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+..|..+..
T Consensus 132 Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-------------- 196 (313)
T 1ogq_A 132 FSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------------- 196 (313)
T ss_dssp CCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--------------
T ss_pred CCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--------------
Confidence 777777766776665 677777777777777777777777776 7777777777777666655543
Q ss_pred ccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCC
Q 046668 158 VQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES 237 (381)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 237 (381)
++ |+.|++++|.+++..|..+..+++|+.|++++|.+++.+|. +..+++
T Consensus 197 -----------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~ 245 (313)
T 1ogq_A 197 -----------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN 245 (313)
T ss_dssp -----------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTT
T ss_pred -----------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCC
Confidence 33 88999999999999999999999999999999999966665 788999
Q ss_pred CCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCC-CCCCCCCCCCC
Q 046668 238 ILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGN-RLCGSPLPNNC 304 (381)
Q Consensus 238 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n-~l~~~~~~~~c 304 (381)
|++|++++|.+++.+|..+..+++|+.|++++|++++.+|....++.++.+++.+| .+||.|.+ .|
T Consensus 246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 99999999999999999999999999999999999999999888999999999999 59998765 46
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-36 Score=303.31 Aligned_cols=300 Identities=32% Similarity=0.509 Sum_probs=233.7
Q ss_pred CccEEEcCCCcccccCCccccCCC-CCCEEECcCCcCcccCCccCCC--CCCCCEEEccCCccceeCCccccCCCCCCEE
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWL-DLLVLNLGNNNFTGNIPISLGM--LSSLQSLNLRKNSLSGQIPASFQNCTKLVML 77 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 77 (381)
+|++|++++|.+++.+|..+.+++ +|++|++++|.+++..|..+.. +++|++|++++|.+++.+|..+.++++|++|
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence 477888888888878888887776 7888888888887777776665 6778888888888777777778888888888
Q ss_pred eCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcc
Q 046668 78 DIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTD 157 (381)
Q Consensus 78 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~ 157 (381)
++++|.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.++++.+..
T Consensus 424 ~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp ECCSSEEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECcCCcccCcccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc
Confidence 8888877777777666 677788888888877777777777777788888888877777777777777777777777765
Q ss_pred ccCCCCCCCccccceEEEE-----eccccchhhhcccccEEEccCCcccccCchhh------------------------
Q 046668 158 VQYPSVSTGKYVEDALLVL-----KGKAVEYNTILKLMRLIDLSKNKFSGEIPSEI------------------------ 208 (381)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~------------------------ 208 (381)
..................+ .+..+..+..+++|+.|++++|++++.+|..+
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 5322211111222222222 23344566778889999999998887766543
Q ss_pred ----------------------------------------------hccccCcEEeCCCcccccccChhhhccCCCCEEe
Q 046668 209 ----------------------------------------------MNLRALVSLDLSCNSFTGRIPNSIGALESILSID 242 (381)
Q Consensus 209 ----------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 242 (381)
..++.|+.|++++|++++.+|..++.+++|+.|+
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 662 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence 3357789999999999999999999999999999
Q ss_pred ccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCCCCCCCC
Q 046668 243 FSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLCGSPLP 301 (381)
Q Consensus 243 L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l~~~~~~ 301 (381)
|++|.+++.+|..+..+++|+.||+++|+++|.+|.. ..++.|+.+++++|.++|..+.
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 9999999999999999999999999999999999975 6678889999999988876543
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=280.53 Aligned_cols=278 Identities=22% Similarity=0.213 Sum_probs=213.8
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
++++|+|++|++++..+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|.++...+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 47899999999998888899999999999999999998889999999999999999999997777788999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|++.+..+..+. .+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.++++.+.....
T Consensus 113 ~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 113 ENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TSCCCEECTTTTT-TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCccccCChhHcc-ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 9999865555554 899999999999999988888999999999999999999866667788888888888887766554
Q ss_pred CCCCCCccccceEEE------------------------Eeccc-----cchhhhcccccEEEccCCcccccCchhhhcc
Q 046668 161 PSVSTGKYVEDALLV------------------------LKGKA-----VEYNTILKLMRLIDLSKNKFSGEIPSEIMNL 211 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~------------------------~~~~~-----~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l 211 (381)
+.............. +.+.. ...+..+++|+.|++++|.+++..+..|..+
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 432222222222222 21111 1234456667777777777776666667777
Q ss_pred ccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668 212 RALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS 279 (381)
Q Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 279 (381)
++|++|+|++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.|.|+..
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL 339 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH
Confidence 77777777777777666777777777777777777777665566667777777777777777766543
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.6e-35 Score=276.90 Aligned_cols=295 Identities=20% Similarity=0.159 Sum_probs=196.3
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCc-ccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFT-GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI 79 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 79 (381)
+|++|++++|.+++..|..|.++++|++|++++|.+. .+.+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 4799999999999888999999999999999999986 345778999999999999999999888999999999999999
Q ss_pred cCCcCcccCChh-HHhcCCCCcEEEcccccccccCCcC-ccCCCCCCEEeccCCcCCCCcCcccccc-------------
Q 046668 80 GENEFVGNVPTW-IGIRFSSLMILNLRSNKFRGVLPNQ-LCGLTSLHVLDLADNHLSGSIPKCISNI------------- 144 (381)
Q Consensus 80 ~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l------------- 144 (381)
++|.+.+.++.. .+..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence 999998654443 2337899999999999999877765 8899999999999999998777777655
Q ss_pred ---------------------cccccccccCCccccCCC----------------------------------CCCC---
Q 046668 145 ---------------------SSMVTANFSIGTDVQYPS----------------------------------VSTG--- 166 (381)
Q Consensus 145 ---------------------~~L~~l~~~~~~~~~~~~----------------------------------~~~~--- 166 (381)
++|+.++++.+....... ....
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 270 (455)
T 3v47_A 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270 (455)
T ss_dssp BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG
T ss_pred cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc
Confidence 344444444443211000 0000
Q ss_pred --ccccceEEEEecc-----ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668 167 --KYVEDALLVLKGK-----AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239 (381)
Q Consensus 167 --~~~~~~~~~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 239 (381)
.........+.+. ....+..+++|+.|++++|++.+..|..|..+++|++|++++|.+.+..|..+..+++|+
T Consensus 271 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 0000111111111 122233455555555555555555555555555556666665555544455555555566
Q ss_pred EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCC
Q 046668 240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRL 295 (381)
Q Consensus 240 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l 295 (381)
+|++++|.+++..|..+..+++|++|++++|++++..+.. ..++.++.+++.+|++
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 6666666555555555555556666666666555433221 3445555555555543
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-34 Score=288.38 Aligned_cols=85 Identities=25% Similarity=0.354 Sum_probs=57.3
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCcc--CCCCCCCCEEEccCCccceeCC-ccccCCCCCCEE
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPIS--LGMLSSLQSLNLRKNSLSGQIP-ASFQNCTKLVML 77 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 77 (381)
+|++|+|++|.+++..|+.|.++++|++|+|++|.+++..+.. |.++++|++|++++|.+++..+ ..|.++++|++|
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 3677777777777666777777777777777777776544443 6677777777777777665443 456677777777
Q ss_pred eCcCCcCc
Q 046668 78 DIGENEFV 85 (381)
Q Consensus 78 ~L~~n~l~ 85 (381)
++++|.+.
T Consensus 154 ~Ls~N~i~ 161 (844)
T 3j0a_A 154 DFSSNQIF 161 (844)
T ss_dssp EEESSCCC
T ss_pred ECCCCcCC
Confidence 76666554
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-33 Score=266.51 Aligned_cols=281 Identities=22% Similarity=0.227 Sum_probs=222.6
Q ss_pred CccEEEcCCCcccccC-CccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCcc--ccCCCCCCEE
Q 046668 1 GIRILKLGENHFSGEI-PDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPAS--FQNCTKLVML 77 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L 77 (381)
+|++|++++|.+.+.+ +..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+++..+.. |.++++|++|
T Consensus 55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 134 (455)
T 3v47_A 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134 (455)
T ss_dssp TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEE
Confidence 5889999999987544 567999999999999999999888999999999999999999998655544 8999999999
Q ss_pred eCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccC----------------------------------CCCC
Q 046668 78 DIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG----------------------------------LTSL 123 (381)
Q Consensus 78 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------------------------l~~L 123 (381)
++++|.+.+..|..++..+++|++|++++|.+.+..+..+.. +++|
T Consensus 135 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L 214 (455)
T 3v47_A 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214 (455)
T ss_dssp ECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred ECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccccee
Confidence 999999986667765558999999999999988776655543 3678
Q ss_pred CEEeccCCcCCCCcCcccccc---------------------------------------cccccccccCCccccCCCCC
Q 046668 124 HVLDLADNHLSGSIPKCISNI---------------------------------------SSMVTANFSIGTDVQYPSVS 164 (381)
Q Consensus 124 ~~L~L~~n~l~~~~~~~~~~l---------------------------------------~~L~~l~~~~~~~~~~~~~~ 164 (381)
++|++++|.+.+..|..+... ++|+.++++.+.....+...
T Consensus 215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 294 (455)
T 3v47_A 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294 (455)
T ss_dssp EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred eeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh
Confidence 888888887765444433222 35566666655544433222
Q ss_pred CCccccceEEEEecc-----ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668 165 TGKYVEDALLVLKGK-----AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239 (381)
Q Consensus 165 ~~~~~~~~~~~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 239 (381)
...........+.+. ....+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 222233333333332 233456789999999999999988899999999999999999999988899999999999
Q ss_pred EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCC
Q 046668 240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQ 281 (381)
Q Consensus 240 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 281 (381)
+|++++|++++..+..+..+++|+.|++++|+++|.||....
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence 999999999977777789999999999999999999996543
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.9e-34 Score=254.17 Aligned_cols=230 Identities=28% Similarity=0.439 Sum_probs=210.7
Q ss_pred CccEEEcCC-CcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668 1 GIRILKLGE-NHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI 79 (381)
Q Consensus 1 ~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 79 (381)
+|++|++++ |.+.+.+|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 489999995 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCcccCChhHHhcCC-CCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccc
Q 046668 80 GENEFVGNVPTWIGIRFS-SLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV 158 (381)
Q Consensus 80 ~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~ 158 (381)
++|++.+.+|..++ .++ +|++|++++|.+++..|..+..++ |++|++++|.+++..|..+..
T Consensus 157 ~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~--------------- 219 (313)
T 1ogq_A 157 DGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS--------------- 219 (313)
T ss_dssp CSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT---------------
T ss_pred cCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc---------------
Confidence 99999989999888 677 999999999999999999999887 999999999998777766655
Q ss_pred cCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668 159 QYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238 (381)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 238 (381)
+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|.++..+++|
T Consensus 220 ----------------------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 270 (313)
T 1ogq_A 220 ----------------------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270 (313)
T ss_dssp ----------------------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred ----------------------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence 44588899999999866665 7889999999999999999999999999999
Q ss_pred CEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCC
Q 046668 239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP 277 (381)
Q Consensus 239 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 277 (381)
++|++++|.+++.+|.. ..+++|+.+++++|+..|..|
T Consensus 271 ~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 99999999999888886 789999999999999776544
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.9e-33 Score=256.27 Aligned_cols=287 Identities=18% Similarity=0.203 Sum_probs=215.9
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
++++|++++|.++...+..|.++++|++|++++|.+++..+.+|..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 47899999999986555568899999999999999998888899999999999999999998888899999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|++. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.++++.+.....
T Consensus 126 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred CCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence 99998 78877665899999999999999988888899999999999999998854 244556666666555543322
Q ss_pred CCCCCCc----------------cccceEEEEecc---ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCC
Q 046668 161 PSVSTGK----------------YVEDALLVLKGK---AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSC 221 (381)
Q Consensus 161 ~~~~~~~----------------~~~~~~~~~~~~---~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~ 221 (381)
+...... ........+.+. ....+..+++|+.|++++|.+.+..|..+..+++|++|++++
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 1111100 001111122111 123455677788888888888777777788888888888888
Q ss_pred cccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCC
Q 046668 222 NSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRL 295 (381)
Q Consensus 222 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l 295 (381)
|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++.. + ...++.++.+++.+|++
T Consensus 282 n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCE
T ss_pred CcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCc
Confidence 8877 45555667788888888888877 4555667777888888888887643 3 34566777777777754
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.5e-32 Score=265.45 Aligned_cols=292 Identities=19% Similarity=0.172 Sum_probs=227.1
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
|++|++++|.+++..+..|.++++|++|++++|.++ .+|..+.++++|++|++++|.+.+..|..+.++++|++|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 678999999999888888999999999999999998 6788889999999999999999877788899999999999999
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccC--CcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVL--PNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ 159 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~ 159 (381)
|.+.+.+|...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.++++.+....
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 98877777665557889999999999888665 6778888899999999998887778888888888888888876654
Q ss_pred CCCC-CCCccccceEEEEecc-----ccchhhhcccccEEEccCCccccc---CchhhhccccCcEEeCCCcccccccCh
Q 046668 160 YPSV-STGKYVEDALLVLKGK-----AVEYNTILKLMRLIDLSKNKFSGE---IPSEIMNLRALVSLDLSCNSFTGRIPN 230 (381)
Q Consensus 160 ~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 230 (381)
.... ............+.+. ....+..+++|+.|++++|++.+. .+..+..+++|++|++++|.+++..|.
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence 3221 1222223333333322 334456678888888888888752 235678888888888888888877778
Q ss_pred hhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCC
Q 046668 231 SIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRL 295 (381)
Q Consensus 231 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l 295 (381)
.+..+++|++|++++|++++..|..+..++.| .|++++|++++..|.. ..++.++.+++.+|++
T Consensus 495 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 88888888888888888888788888888888 8888888888655542 3455667777777744
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.4e-32 Score=265.52 Aligned_cols=281 Identities=22% Similarity=0.237 Sum_probs=217.4
Q ss_pred CccccCCC--CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHh
Q 046668 17 PDCWMNWL--DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGI 94 (381)
Q Consensus 17 ~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 94 (381)
+..|.++. +|+.|++++|.+++..+..|..+++|++|++++|.++ .+|..+.++++|++|++++|++.+..|..+.
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~- 322 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS- 322 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG-
T ss_pred hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhh-
Confidence 34455544 7999999999999888888999999999999999998 7888999999999999999999855565555
Q ss_pred cCCCCcEEEcccccccccCCc-CccCCCCCCEEeccCCcCCCCc--CcccccccccccccccCCccccCCCCCCCccccc
Q 046668 95 RFSSLMILNLRSNKFRGVLPN-QLCGLTSLHVLDLADNHLSGSI--PKCISNISSMVTANFSIGTDVQYPSVSTGKYVED 171 (381)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 171 (381)
.+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|+.++++.+.....+..........
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence 899999999999998866654 5899999999999999998655 7789999999999999887655433322222233
Q ss_pred eEEEEeccc------cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccc---cChhhhccCCCCEEe
Q 046668 172 ALLVLKGKA------VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGR---IPNSIGALESILSID 242 (381)
Q Consensus 172 ~~~~~~~~~------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~ 242 (381)
....+.+.. ...+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+. .+..+..+++|++|+
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 333332221 12255677888888888888877777788888888888888888752 235577888888888
Q ss_pred ccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCCCCCCC
Q 046668 243 FSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLCGSPL 300 (381)
Q Consensus 243 L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l~~~~~ 300 (381)
+++|.+++..|..+..+++|+.|++++|++++..|.. ..++.+ .+++.+|.+.+.++
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 8888888777788888888888888888887765543 455666 66777776665443
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3e-32 Score=265.70 Aligned_cols=288 Identities=18% Similarity=0.198 Sum_probs=223.7
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+++.|++++|.+....+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 46889999999986666668889999999999999998888899999999999999999998888889999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|.+. .+|..++..+++|++|++++|.+.+..|..|..+++|++|++++|.+++.. +..+++|+.++++.+....+
T Consensus 132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc
Confidence 99998 777776558999999999999999888888999999999999999988542 34455555555555443322
Q ss_pred CCCCCCc----------------cccceEEEEecc---ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCC
Q 046668 161 PSVSTGK----------------YVEDALLVLKGK---AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSC 221 (381)
Q Consensus 161 ~~~~~~~----------------~~~~~~~~~~~~---~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~ 221 (381)
+...... ........+.+. ....+..++.|+.|++++|.+.+..|..|..+++|+.|+|++
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 1111000 001112222221 124456788899999999998888888888899999999999
Q ss_pred cccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCCC
Q 046668 222 NSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLC 296 (381)
Q Consensus 222 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l~ 296 (381)
|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++. + ...++.|..+++.+|++.
T Consensus 288 N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 288 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp SCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEE
T ss_pred CCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCC
Confidence 9888 45666677889999999999888 5677778888899999999988754 3 345677888888888553
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=1.5e-31 Score=252.35 Aligned_cols=252 Identities=21% Similarity=0.206 Sum_probs=214.0
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 82 (381)
+.++.++..++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 45666777777 5665543 68999999999999888889999999999999999999888889999999999999999
Q ss_pred cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcC-cccccccccccccccCCccccCC
Q 046668 83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP-KCISNISSMVTANFSIGTDVQYP 161 (381)
Q Consensus 83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~~~~~~~~~~~ 161 (381)
++. .+|...+..+++|++|+|++|.+....+..|.++++|++|++++|...+.++ ..+..+++|+.|+++.+.....+
T Consensus 134 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 134 WLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp CCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred cCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 987 6666555578999999999999987777788899999999999854433444 56888899999998888766544
Q ss_pred CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 241 (381)
. +..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|
T Consensus 213 ~---------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 213 N---------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp C---------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred c---------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 3 2347789999999999999999999999999999999999998889999999999999
Q ss_pred eccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668 242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS 279 (381)
Q Consensus 242 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 279 (381)
++++|.+++..+..+..+++|+.|++++|++.|+|...
T Consensus 272 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp ECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred ECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 99999999877788899999999999999999998753
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=251.57 Aligned_cols=252 Identities=22% Similarity=0.230 Sum_probs=217.2
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 82 (381)
+.++.++..++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 45677777777 5666553 68999999999999888889999999999999999999888889999999999999999
Q ss_pred cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCc-CcccccccccccccccCCccccCC
Q 046668 83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSI-PKCISNISSMVTANFSIGTDVQYP 161 (381)
Q Consensus 83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~l~~~~~~~~~~~ 161 (381)
++. .++...+..+++|++|++++|.+....+..|..+++|++|++++|...+.+ +..|.++++|+.|+++.+....++
T Consensus 123 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 123 RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp CCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred cCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 998 666654557899999999999999777778999999999999985443344 457888999999999888766554
Q ss_pred CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 241 (381)
. +..+++|+.|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|++|
T Consensus 202 ~---------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 202 N---------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp C---------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred c---------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 3 2347789999999999999889999999999999999999998889999999999999
Q ss_pred eccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668 242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS 279 (381)
Q Consensus 242 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 279 (381)
+|++|++++..+..+..+++|+.|++++|++.|+|...
T Consensus 261 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp ECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred ECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence 99999999888888899999999999999999998754
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.9e-32 Score=263.76 Aligned_cols=113 Identities=23% Similarity=0.199 Sum_probs=66.1
Q ss_pred hhhcccccEEEccCCcccccCchhhhccccCcEEeCCCccccc-ccChhhhccCCCCEEeccCCcCcccCchhhhCCCCC
Q 046668 184 NTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTG-RIPNSIGALESILSIDFSANQLYGEIPQSISSLTFL 262 (381)
Q Consensus 184 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 262 (381)
+..++.|+.|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..++.+++|++|++++|.+++..|..+..+++|
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 3445566666666666665555556666666666666666654 245556666666666666666665555556666666
Q ss_pred CeeeCCCCcceecCCCC-CCCCccCCCcccCCCCC
Q 046668 263 SRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLC 296 (381)
Q Consensus 263 ~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l~ 296 (381)
++|++++|++++..|.. ..++.++.+++++|.+.
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 66666666665544332 33455555555555444
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.4e-32 Score=266.94 Aligned_cols=158 Identities=24% Similarity=0.351 Sum_probs=140.3
Q ss_pred CccEEEcCCCccccc-----------------CCcccc--CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-c
Q 046668 1 GIRILKLGENHFSGE-----------------IPDCWM--NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-L 60 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 60 (381)
+|++|+|++|.+++. +|..+. ++++|++|+|++|.+.+.+|..|.++++|++|++++|. +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 589999999999985 899988 99999999999999999999999999999999999998 8
Q ss_pred ce-eCCccccCC------CCCCEEeCcCCcCcccCCh--hHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCC
Q 046668 61 SG-QIPASFQNC------TKLVMLDIGENEFVGNVPT--WIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADN 131 (381)
Q Consensus 61 ~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 131 (381)
++ .+|..+.++ ++|++|++++|++. .+|. .+. .+++|++|++++|.+.+.+| .+..+++|++|++++|
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence 87 788888776 89999999999998 8887 666 89999999999999998888 8888889999999999
Q ss_pred cCCCCcCcccccccc-cccccccCCccccCCC
Q 046668 132 HLSGSIPKCISNISS-MVTANFSIGTDVQYPS 162 (381)
Q Consensus 132 ~l~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~ 162 (381)
.++ .+|..+..+++ |+.++++.+....+|.
T Consensus 364 ~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~ 394 (636)
T 4eco_A 364 QIT-EIPANFCGFTEQVENLSFAHNKLKYIPN 394 (636)
T ss_dssp EEE-ECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred ccc-cccHhhhhhcccCcEEEccCCcCcccch
Confidence 888 78888888888 8888888887766554
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.8e-31 Score=263.29 Aligned_cols=278 Identities=19% Similarity=0.193 Sum_probs=207.7
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCc--ccCCccCCCC--CCCCEEEccCCccceeCCccccCCCCCCE
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFT--GNIPISLGML--SSLQSLNLRKNSLSGQIPASFQNCTKLVM 76 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 76 (381)
+|++|++++|.+++..+..|.++++|++|++++|.+. ......|..+ ++|++|++++|.+++..|.+|.++++|++
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 3567777777777666666777777777777766532 2222233322 46777777777777777888888888888
Q ss_pred EeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCC--CCcCcccccccccccccccC
Q 046668 77 LDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS--GSIPKCISNISSMVTANFSI 154 (381)
Q Consensus 77 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~l~~~~ 154 (381)
|++++|.+.+.+|...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+. +..|..+..+++|+.++++.
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 8888888876677555557888888888888888777777777888888888888775 45677778888888888877
Q ss_pred CccccCCCCCCCccccceEEEEeccccc-------------hhhhcccccEEEccCCcccccCchhhhccccCcEEeCCC
Q 046668 155 GTDVQYPSVSTGKYVEDALLVLKGKAVE-------------YNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSC 221 (381)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~ 221 (381)
+.....+..............+.++... .+..+++|+.|++++|+++...+..|..+++|++|++++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 7766555443333334444444443322 246678899999999999866666789999999999999
Q ss_pred cccccccChhhhccCCCCEEeccCCcCcccCchhhh-CCCCCCeeeCCCCcceecCCC
Q 046668 222 NSFTGRIPNSIGALESILSIDFSANQLYGEIPQSIS-SLTFLSRLKLSNNNLSGKIPL 278 (381)
Q Consensus 222 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~ 278 (381)
|.+++..+..|..+++|++|++++|++++..+..+. .+++|+.+++++|++.|+|+.
T Consensus 570 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999976667788999999999999999987777776 788999999999999999986
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.8e-31 Score=239.38 Aligned_cols=264 Identities=21% Similarity=0.275 Sum_probs=225.0
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
++.++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 678999999988 5676553 6899999999999988888999999999999999999988899999999999999999
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCC--CcCcccccccccccccccCCcccc
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG--SIPKCISNISSMVTANFSIGTDVQ 159 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~l~~~~~~~~~ 159 (381)
|++. .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|+.++++.+....
T Consensus 110 n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 110 NQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 9998 7777653 799999999999997777789999999999999999863 667889999999999998887665
Q ss_pred CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239 (381)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 239 (381)
++... .++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 186 l~~~~----------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 243 (330)
T 1xku_A 186 IPQGL----------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243 (330)
T ss_dssp CCSSC----------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred CCccc----------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence 44321 25799999999999988889999999999999999999977777899999999
Q ss_pred EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-------CCCCccCCCcccCCCC
Q 046668 240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-------TQLQSFDPSSFTGNRL 295 (381)
Q Consensus 240 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-------~~l~~l~~~~~~~n~l 295 (381)
+|++++|.++ .+|..+..+++|++|++++|++++..+.. .....+..+++.+|++
T Consensus 244 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred EEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 9999999999 77888899999999999999998643321 1124455666777754
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=1.6e-31 Score=254.11 Aligned_cols=289 Identities=19% Similarity=0.214 Sum_probs=235.9
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 82 (381)
+.++.++++++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46778888888 5676553 68999999999999888999999999999999999999888999999999999999999
Q ss_pred cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCC
Q 046668 83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPS 162 (381)
Q Consensus 83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 162 (381)
++. .+|...+..+++|++|+|++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.++++.+.....+.
T Consensus 91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 998 6776655589999999999999998889999999999999999999998888899999999999999987765543
Q ss_pred CCCCccccceEEEEecccc-----chhhhc------------------------ccccEEEccCCcccccCchhhhcccc
Q 046668 163 VSTGKYVEDALLVLKGKAV-----EYNTIL------------------------KLMRLIDLSKNKFSGEIPSEIMNLRA 213 (381)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~-----~~~~~~------------------------~~L~~L~L~~n~~~~~~~~~~~~l~~ 213 (381)
.............+..... ..+..+ .+|+.|++++|++++..+..+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 2122222222223322111 111112 26777777788887655567899999
Q ss_pred CcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccC
Q 046668 214 LVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTG 292 (381)
Q Consensus 214 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~ 292 (381)
|++|+|++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+.. ..++.|+.+++.+
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 999999999999777888999999999999999999888889999999999999999998654432 4567788888888
Q ss_pred CCC
Q 046668 293 NRL 295 (381)
Q Consensus 293 n~l 295 (381)
|++
T Consensus 330 N~l 332 (477)
T 2id5_A 330 NPL 332 (477)
T ss_dssp SCE
T ss_pred CCc
Confidence 854
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=1.7e-31 Score=270.22 Aligned_cols=274 Identities=18% Similarity=0.140 Sum_probs=187.2
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCc-ccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFT-GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI 79 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 79 (381)
+|++|+|++|.+++..+..|.++++|++|+|++|... .+.|.+|.++++|++|+|++|.+.+..|.+|.++++|++|++
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 104 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence 4789999999999888999999999999999999544 445889999999999999999999888999999999999999
Q ss_pred cCCcCcccCChh-HHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcCcccccc--cccccccccCC
Q 046668 80 GENEFVGNVPTW-IGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIPKCISNI--SSMVTANFSIG 155 (381)
Q Consensus 80 ~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~l~~~~~ 155 (381)
++|.+.+.+|.. .+..+++|++|+|++|.+.+..+ ..|.++++|++|++++|.+.+..+..+..+ ++|+.++++.+
T Consensus 105 s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence 999998766654 23379999999999999987654 578999999999999999988888877766 66776666655
Q ss_pred ccccCCCCCCCc------cccceEEEEecc-----------------------------------------ccchhhh--
Q 046668 156 TDVQYPSVSTGK------YVEDALLVLKGK-----------------------------------------AVEYNTI-- 186 (381)
Q Consensus 156 ~~~~~~~~~~~~------~~~~~~~~~~~~-----------------------------------------~~~~~~~-- 186 (381)
............ ........+.+. ....+..
T Consensus 185 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~ 264 (844)
T 3j0a_A 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264 (844)
T ss_dssp BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence 433211100000 000000000000 0000000
Q ss_pred cccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeee
Q 046668 187 LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLK 266 (381)
Q Consensus 187 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 266 (381)
.++|+.|++++|.+.+..+..|..+++|+.|+|++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus 265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 24455666666655555555555556666666666655555555555555566666666555555555555555555555
Q ss_pred CCCCccee
Q 046668 267 LSNNNLSG 274 (381)
Q Consensus 267 l~~N~l~~ 274 (381)
+++|++.+
T Consensus 345 L~~N~i~~ 352 (844)
T 3j0a_A 345 LQKNHIAI 352 (844)
T ss_dssp CCSCCCCC
T ss_pred CCCCCCCc
Confidence 55555543
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=6.1e-31 Score=238.23 Aligned_cols=264 Identities=21% Similarity=0.280 Sum_probs=224.1
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
++.++++++.++ .+|..+ .++|++|++++|.+++..+.+|.++++|++|++++|.+++..|.+|.++++|++|++++
T Consensus 35 l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 688999999988 667665 37999999999999988888999999999999999999988899999999999999999
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCC--CCcCcccccccccccccccCCcccc
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS--GSIPKCISNISSMVTANFSIGTDVQ 159 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~l~~~~~~~~~ 159 (381)
|++. .+|..++ ++|++|++++|.+....+..+..+++|++|++++|.++ +..+..+..+ +|+.++++.+....
T Consensus 112 n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 9998 7887654 79999999999999777777999999999999999996 3667788887 89999998887665
Q ss_pred CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239 (381)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 239 (381)
+|... .+.|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 187 l~~~~----------------------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 244 (332)
T 2ft3_A 187 IPKDL----------------------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244 (332)
T ss_dssp CCSSS----------------------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCC
T ss_pred cCccc----------------------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCC
Confidence 44321 25699999999999988888899999999999999999977777899999999
Q ss_pred EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC--C-----CCCccCCCcccCCCCC
Q 046668 240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS--T-----QLQSFDPSSFTGNRLC 296 (381)
Q Consensus 240 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~--~-----~l~~l~~~~~~~n~l~ 296 (381)
+|++++|.++ .+|..+..+++|+.|++++|++++..+.. . ....+..+++.+|++.
T Consensus 245 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp EEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred EEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 9999999998 77888899999999999999998643321 1 1344566677777543
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=3e-32 Score=267.29 Aligned_cols=289 Identities=21% Similarity=0.284 Sum_probs=207.4
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCc-Ccc-cCCccCCCC------CCCCEEEccCCccceeCCc--cccC
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNN-FTG-NIPISLGML------SSLQSLNLRKNSLSGQIPA--SFQN 70 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~ 70 (381)
+|++|++++|.+.+.+|..|.++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .+.+
T Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~ 328 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK 328 (636)
T ss_dssp TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc
Confidence 47899999999999999999999999999999998 887 788777766 89999999999988 7787 8889
Q ss_pred CCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCC-CCEEeccCCcCCCCcCccccccc--cc
Q 046668 71 CTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS-LHVLDLADNHLSGSIPKCISNIS--SM 147 (381)
Q Consensus 71 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L 147 (381)
+++|++|++++|++.|.+| .+. .+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+. +|
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 404 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFG-SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM 404 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCE-EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred CCCCCEEeCcCCcCccchh-hhC-CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence 9999999999999888888 544 7888888888888888 77777888888 888888888888 7777776654 78
Q ss_pred ccccccCCccccCCCCCCC-------ccccceEEEEecccc-----chhhhcccccEEEccCCcccccCchhhhcc----
Q 046668 148 VTANFSIGTDVQYPSVSTG-------KYVEDALLVLKGKAV-----EYNTILKLMRLIDLSKNKFSGEIPSEIMNL---- 211 (381)
Q Consensus 148 ~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-----~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l---- 211 (381)
+.++++.+........... .........+.+... .....+++|+.|++++|+++...+..+...
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 8888877766442211111 112223333333222 122346777777777777773333333322
Q ss_pred ---ccCcEEeCCCcccccccChhhh--ccCCCCEEeccCCcCcccCchhhhCCCCCCeeeC------CCCcceecCCCC-
Q 046668 212 ---RALVSLDLSCNSFTGRIPNSIG--ALESILSIDFSANQLYGEIPQSISSLTFLSRLKL------SNNNLSGKIPLS- 279 (381)
Q Consensus 212 ---~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l------~~N~l~~~~~~~- 279 (381)
++|++|++++|.++ .+|..+. .+++|++|++++|.+++ +|..+..+++|+.|++ ++|++.+.+|..
T Consensus 485 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp TTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred cccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 27777777777777 6666665 77777777777777775 6666777777777777 345566666643
Q ss_pred CCCCccCCCcccCCCCC
Q 046668 280 TQLQSFDPSSFTGNRLC 296 (381)
Q Consensus 280 ~~l~~l~~~~~~~n~l~ 296 (381)
..++.|+.+++++|.+.
T Consensus 563 ~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp GGCSSCCEEECCSSCCC
T ss_pred hcCCCCCEEECCCCcCC
Confidence 44666777777777663
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=7.1e-32 Score=261.00 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=129.8
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|++++..|..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 47899999999998888999999999999999999998888999999999999999999998777789999999999999
Q ss_pred CCcCcc-cCChhHHhcCCCCcEEEccccc-ccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccC
Q 046668 81 ENEFVG-NVPTWIGIRFSSLMILNLRSNK-FRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSI 154 (381)
Q Consensus 81 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~ 154 (381)
+|.+.+ ..|..+. .+++|++|++++|. +....+..+.++++|++|++++|.+.+..|..+..+++|+.++++.
T Consensus 107 ~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 107 GNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp TCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CCcccccchhhhhh-ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 999874 2445554 78999999999998 4544446889999999999999999877787777665555554433
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.98 E-value=1.3e-31 Score=237.37 Aligned_cols=243 Identities=20% Similarity=0.183 Sum_probs=204.6
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 82 (381)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 46788888888 556544 468999999999999888888999999999999999999888999999999999999999
Q ss_pred c-CcccC-ChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 83 E-FVGNV-PTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 83 ~-l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+ +. .+ |..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..
T Consensus 91 ~~l~-~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------- 151 (285)
T 1ozn_A 91 AQLR-SVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD----------------- 151 (285)
T ss_dssp TTCC-CCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------
T ss_pred CCcc-ccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-----------------
Confidence 7 65 55 44444 7899999999999999877888999999999999999988544444443
Q ss_pred CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCE
Q 046668 161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 240 (381)
+++|+.|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 152 --------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 152 --------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205 (285)
T ss_dssp --------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred --------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccE
Confidence 455889999999998777778999999999999999999888999999999999
Q ss_pred EeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCC
Q 046668 241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGN 293 (381)
Q Consensus 241 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n 293 (381)
|++++|.+++..+..+..+++|+.|++++|++.|.++....+.+++......+
T Consensus 206 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~ 258 (285)
T 1ozn_A 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 258 (285)
T ss_dssp EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEEC
T ss_pred eeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccC
Confidence 99999999987777899999999999999999998886544455555444444
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=2.4e-31 Score=260.34 Aligned_cols=146 Identities=22% Similarity=0.187 Sum_probs=124.3
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
++++|++++|.+++..+..|.++++|++|++++|.++++.|.+|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 47899999999998888889999999999999999998888899999999999999999998889999999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccc-cCCcCccCCCCCCEEeccCCcCCCCcCccccccccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRG-VLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 147 (381)
+|.+.+..+..+. .+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+.+|
T Consensus 113 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 113 ETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp TSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred CCccccccccccC-CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 9998744434544 78999999999999885 458889999999999999999887666666555544
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=7.3e-31 Score=258.09 Aligned_cols=140 Identities=21% Similarity=0.232 Sum_probs=123.7
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
++++|||++|+|+++.+.+|.++++|++|+|++|.|+++.+++|.++++|++|+|++|.+++..+.+|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 47899999999998888899999999999999999998889999999999999999999998888899999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEccccccccc-CCcCccCCCCCCEEeccCCcCCCCcCccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIPKCI 141 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 141 (381)
+|++. .++...+..+++|++|++++|.++.. .|..+..+++|++|++++|++++..+..+
T Consensus 133 ~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 133 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 99998 56655444899999999999999753 56788899999999999998875444433
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=9.2e-31 Score=259.55 Aligned_cols=269 Identities=20% Similarity=0.192 Sum_probs=184.7
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..+.+|.++++|++|+++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 47899999999998777889999999999999999998889999999999999999999997666689999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccc--cccccccccccCCccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCIS--NISSMVTANFSIGTDV 158 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~l~~~~~~~~ 158 (381)
+|++.+..|..+. .+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|+.++++.+...
T Consensus 106 ~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 106 SNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp SSCCCCCCSCTTT-TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCccCccChhHcc-ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 9999743334454 899999999999999988888899999999999999999876666554 4588999999888665
Q ss_pred cCCCCCCCccccceEEEEeccccch--------hhhcccccEEEccCCcccccCchhhhcccc--CcEEeCCCccccccc
Q 046668 159 QYPSVSTGKYVEDALLVLKGKAVEY--------NTILKLMRLIDLSKNKFSGEIPSEIMNLRA--LVSLDLSCNSFTGRI 228 (381)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~Ls~n~l~~~~ 228 (381)
..+..............+....... ....+.|+.|++++|.+.+..|..+..++. |++|++++|.+++..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 5443221111111111111110000 001244555555555555555555554433 555555555555444
Q ss_pred ChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCC
Q 046668 229 PNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNN 270 (381)
Q Consensus 229 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N 270 (381)
|..++.+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 455555555555555555555444444444444444444443
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.8e-30 Score=233.74 Aligned_cols=266 Identities=19% Similarity=0.222 Sum_probs=218.5
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
++++|++++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 4789999999999877778999999999999999999888999999999999999999998 5565543 799999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccc--cCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRG--VLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV 158 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~ 158 (381)
+|++. .++...+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|+.++++.+...
T Consensus 130 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 130 ENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp SSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC
T ss_pred CCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC
Confidence 99998 5665555589999999999999963 66788999999999999999998 4565544 78888988877654
Q ss_pred cCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668 159 QYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238 (381)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 238 (381)
..+ ...+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|
T Consensus 206 ~~~-------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 206 KVD-------------------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp EEC-------------------TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred ccC-------------------HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCc
Confidence 321 233455788999999999999888888999999999999999999 888889999999
Q ss_pred CEEeccCCcCcccCchhhhC------CCCCCeeeCCCCcceecC-CCC--CCCCccCCCcccCC
Q 046668 239 LSIDFSANQLYGEIPQSISS------LTFLSRLKLSNNNLSGKI-PLS--TQLQSFDPSSFTGN 293 (381)
Q Consensus 239 ~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~N~l~~~~-~~~--~~l~~l~~~~~~~n 293 (381)
++|++++|.+++..+..+.. .+.++.+++++|++.... +.. ..+..++.+++++|
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 99999999999766666643 368999999999987532 211 23445555556555
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.7e-31 Score=255.27 Aligned_cols=130 Identities=23% Similarity=0.250 Sum_probs=66.2
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
+++|++++|.+++..+.+|.++++|++|+|++|.++++.+.+|.++++|++|++++|.+++..|.+|.++++|++|++++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence 45556666655555555555556666666665555555555555555555555555555555455555555555555555
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccc-cCCcCccCCCCCCEEeccCCc
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRG-VLPNQLCGLTSLHVLDLADNH 132 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 132 (381)
|++. .++...+..+++|++|++++|.+.+ .+|..+.++++|++|++++|.
T Consensus 110 n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 110 TNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp SCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 5544 2222111144444444444444443 134444444444444444443
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.4e-31 Score=252.65 Aligned_cols=290 Identities=17% Similarity=0.158 Sum_probs=169.7
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.+++..|..|.++++|++|+|++|.+++..|.+|.++++|++|++++|.++ .+|.. .+++|++|+++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEecc
Confidence 3566777777766655566667777777777777776666666777777777777777766 34433 66677777777
Q ss_pred CCcCcc-cCChhHHhcCCCCcEEEcccccccccCCcCccCCCCC--CEEeccCCcC--CCCcCccccc------------
Q 046668 81 ENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSL--HVLDLADNHL--SGSIPKCISN------------ 143 (381)
Q Consensus 81 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~------------ 143 (381)
+|++.+ .+|..+. .+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 99 ~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 99 FNAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp SSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred CCccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 776654 3455554 66677777777766654 234445555 6666666665 4444443333
Q ss_pred --------------ccccccccccCCc-----------------------------------------------------
Q 046668 144 --------------ISSMVTANFSIGT----------------------------------------------------- 156 (381)
Q Consensus 144 --------------l~~L~~l~~~~~~----------------------------------------------------- 156 (381)
+++|+.++++.+.
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 3333333333321
Q ss_pred ----cc-cCCCCCC----CccccceEEEEeccc--------------------------cch---hhhcccccEEEccCC
Q 046668 157 ----DV-QYPSVST----GKYVEDALLVLKGKA--------------------------VEY---NTILKLMRLIDLSKN 198 (381)
Q Consensus 157 ----~~-~~~~~~~----~~~~~~~~~~~~~~~--------------------------~~~---~~~~~~L~~L~L~~n 198 (381)
.. ..|.... ..........+.... ... ...++.|+.|++++|
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred ecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECC
Confidence 11 0111000 000000001111000 000 045667788888888
Q ss_pred cccccCchhhhccccCcEEeCCCccccc--ccChhhhccCCCCEEeccCCcCcccCch-hhhCCCCCCeeeCCCCcceec
Q 046668 199 KFSGEIPSEIMNLRALVSLDLSCNSFTG--RIPNSIGALESILSIDFSANQLYGEIPQ-SISSLTFLSRLKLSNNNLSGK 275 (381)
Q Consensus 199 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~N~l~~~ 275 (381)
++++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence 8877777777788888888888888775 4456677778888888888887764554 366677777777777777665
Q ss_pred CCCCCCCCccCCCcccCCCCCCC
Q 046668 276 IPLSTQLQSFDPSSFTGNRLCGS 298 (381)
Q Consensus 276 ~~~~~~l~~l~~~~~~~n~l~~~ 298 (381)
.|..- .+.++.+++++|.+...
T Consensus 415 ~~~~l-~~~L~~L~Ls~N~l~~i 436 (520)
T 2z7x_B 415 IFRCL-PPRIKVLDLHSNKIKSI 436 (520)
T ss_dssp GGGSC-CTTCCEEECCSSCCCCC
T ss_pred hhhhh-cccCCEEECCCCccccc
Confidence 54321 14566666676655533
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.9e-30 Score=235.05 Aligned_cols=265 Identities=21% Similarity=0.256 Sum_probs=218.9
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 4789999999999888889999999999999999999888999999999999999999998 5555544 899999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEccccccc--ccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFR--GVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV 158 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~ 158 (381)
+|++. .++...+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+++ +|..+. ++|+.++++.+...
T Consensus 132 ~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 132 DNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp SSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred CCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence 99998 666655558999999999999996 3667788888 99999999999984 665554 68899998888665
Q ss_pred cCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668 159 QYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238 (381)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 238 (381)
..+. ..+..+++|+.|++++|++.+..+..+..+++|++|++++|.++ .+|..+..+++|
T Consensus 207 ~~~~-------------------~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 207 AIEL-------------------EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp CCCT-------------------TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred ccCH-------------------HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence 4332 22344788999999999999888888999999999999999999 888889999999
Q ss_pred CEEeccCCcCcccCchhhhC------CCCCCeeeCCCCccee--cCCC-CCCCCccCCCcccCC
Q 046668 239 LSIDFSANQLYGEIPQSISS------LTFLSRLKLSNNNLSG--KIPL-STQLQSFDPSSFTGN 293 (381)
Q Consensus 239 ~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~N~l~~--~~~~-~~~l~~l~~~~~~~n 293 (381)
++|++++|.+++..+..+.. .+.|+.|++++|++.. ..|. ...++.++.+++.+|
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 99999999999776666654 3678999999999873 2222 134566666666665
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.3e-31 Score=237.27 Aligned_cols=254 Identities=19% Similarity=0.216 Sum_probs=212.9
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCcccee--CCccccCCCCCCEEeCc
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ--IPASFQNCTKLVMLDIG 80 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~ 80 (381)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.++.. .+..+.++++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46788888887 566554 36899999999999866666788999999999999988733 36777889999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ 159 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~ 159 (381)
+|.+. .+|..+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.++++.+....
T Consensus 87 ~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 99987 6776655 78999999999999986554 578889999999999999988888889999999999888776432
Q ss_pred CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239 (381)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 239 (381)
. .....+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 165 ~------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 226 (306)
T 2z66_A 165 N------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226 (306)
T ss_dssp G------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred c------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence 0 0122334578899999999999988899999999999999999999977777889999999
Q ss_pred EEeccCCcCcccCchhhhCCC-CCCeeeCCCCcceecCCCC
Q 046668 240 SIDFSANQLYGEIPQSISSLT-FLSRLKLSNNNLSGKIPLS 279 (381)
Q Consensus 240 ~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~ 279 (381)
+|++++|.+++..|..+..++ +|+.|++++|+++|.|+..
T Consensus 227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred EeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence 999999999988888888885 9999999999999988754
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.1e-31 Score=263.62 Aligned_cols=157 Identities=24% Similarity=0.278 Sum_probs=139.4
Q ss_pred CccEEEcCCCcccc-----------------cCCcccc--CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-c
Q 046668 1 GIRILKLGENHFSG-----------------EIPDCWM--NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-L 60 (381)
Q Consensus 1 ~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 60 (381)
+|++|+|++|.+++ .+|..+. ++++|++|+|++|.+.+.+|..|.++++|++|++++|. +
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 58999999999998 3888877 99999999999999999999999999999999999998 8
Q ss_pred ce-eCCccccCCC-------CCCEEeCcCCcCcccCCh--hHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccC
Q 046668 61 SG-QIPASFQNCT-------KLVMLDIGENEFVGNVPT--WIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLAD 130 (381)
Q Consensus 61 ~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 130 (381)
++ .+|..+.+++ +|++|++++|.+. .+|. .+. .+++|++|+|++|.++ .+| .+..+++|++|++++
T Consensus 529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS
T ss_pred ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC
Confidence 87 7887666554 9999999999998 8888 666 8999999999999999 777 899999999999999
Q ss_pred CcCCCCcCcccccccc-cccccccCCccccCCC
Q 046668 131 NHLSGSIPKCISNISS-MVTANFSIGTDVQYPS 162 (381)
Q Consensus 131 n~l~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~ 162 (381)
|.+. .+|..+..+++ |+.|+++.+....+|.
T Consensus 605 N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~ 636 (876)
T 4ecn_A 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN 636 (876)
T ss_dssp SCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS
T ss_pred Cccc-cchHHHhhccccCCEEECcCCCCCcCch
Confidence 9998 88888999998 9999999888776654
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.7e-30 Score=250.48 Aligned_cols=289 Identities=22% Similarity=0.225 Sum_probs=183.5
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.+++..+..|.++++|++|+|++|.+++..|++|.++++|++|++++|.++ .+|.. .+++|++|+++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence 4788888888888777778888888888888888888888888888888888888888888 45554 78888888888
Q ss_pred CCcCcc-cCChhHHhcCCCCcEEEcccccccccCCcCccCCCCC--CEEeccCCcC--CCCcCccccccc----------
Q 046668 81 ENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSL--HVLDLADNHL--SGSIPKCISNIS---------- 145 (381)
Q Consensus 81 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~---------- 145 (381)
+|++.+ .+|..+. .+++|++|++++|.+++. .+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 130 ~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 130 FNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp SSCCSBCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCccccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 888874 2345555 788888888888887643 23334444 7777777766 444444443322
Q ss_pred -----------------------------------------------------------------------ccccccccC
Q 046668 146 -----------------------------------------------------------------------SMVTANFSI 154 (381)
Q Consensus 146 -----------------------------------------------------------------------~L~~l~~~~ 154 (381)
+|+.++++.
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 233333332
Q ss_pred Cccc-cCCCCCC----------------------------------------------------CccccceEEEEecc--
Q 046668 155 GTDV-QYPSVST----------------------------------------------------GKYVEDALLVLKGK-- 179 (381)
Q Consensus 155 ~~~~-~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~-- 179 (381)
+... ..|.... ..........+.+.
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence 2221 1111100 11111222222222
Q ss_pred ---ccchhhhcccccEEEccCCcccccC--chhhhccccCcEEeCCCcccccccCh-hhhccCCCCEEeccCCcCcccCc
Q 046668 180 ---AVEYNTILKLMRLIDLSKNKFSGEI--PSEIMNLRALVSLDLSCNSFTGRIPN-SIGALESILSIDFSANQLYGEIP 253 (381)
Q Consensus 180 ---~~~~~~~~~~L~~L~L~~n~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 253 (381)
.+..+..+++|+.|++++|++++.. |..+..+++|++|++++|.+++.+|. .+..+++|++|++++|.+++.+|
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 2333456778888888888887533 45677888888888888888763443 46666777777777777765544
Q ss_pred hhhhCCCCCCeeeCCCCcceecCCC-CCCCCccCCCcccCCCCCCCC
Q 046668 254 QSISSLTFLSRLKLSNNNLSGKIPL-STQLQSFDPSSFTGNRLCGSP 299 (381)
Q Consensus 254 ~~l~~l~~L~~L~l~~N~l~~~~~~-~~~l~~l~~~~~~~n~l~~~~ 299 (381)
..+. ++|+.|++++|+++ .+|. ...++.++.+++.+|.+.+.|
T Consensus 446 ~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~ 489 (562)
T 3a79_B 446 RCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVP 489 (562)
T ss_dssp SSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred hhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCC
Confidence 4332 46666666666665 3332 234555666666666555443
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=4.9e-31 Score=238.01 Aligned_cols=223 Identities=20% Similarity=0.250 Sum_probs=133.3
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
++.|++++|.++ .+|..+.++++|++|+|++|.++ .+|..|.++++|++|++++|.++ .+|..+.++++|++|++++
T Consensus 83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 344555555554 44444444555555555555554 44444555555555555555554 4444555555555555555
Q ss_pred CcCcccCChhHHh--------cCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccccccccccccc
Q 046668 82 NEFVGNVPTWIGI--------RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFS 153 (381)
Q Consensus 82 n~l~~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~ 153 (381)
|.+.+.+|..+.. .+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l------------ 225 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI------------ 225 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG------------
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh------------
Confidence 4444444443320 2444555555555444 34444444445555555554444 222222
Q ss_pred CCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhh
Q 046668 154 IGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIG 233 (381)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 233 (381)
..+++|+.|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 226 -------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 226 -------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp -------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred -------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence 2255577788888877777777788888888888888877777887788
Q ss_pred ccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcc
Q 046668 234 ALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNL 272 (381)
Q Consensus 234 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l 272 (381)
.+++|++|++++|.+.+.+|..+..+++|+.+++..+.+
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 888888888888888778888888888888887776654
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.8e-31 Score=243.78 Aligned_cols=257 Identities=19% Similarity=0.240 Sum_probs=139.3
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 133 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTT
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCC
Confidence 44455555554443333444455555555555555444444455555555555555554433333344455555555555
Q ss_pred CcCcccCCh-hHHhcCCCCcEEEcccc-cccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668 82 NEFVGNVPT-WIGIRFSSLMILNLRSN-KFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ 159 (381)
Q Consensus 82 n~l~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~ 159 (381)
|++. .+|. ..+..+++|++|++++| .+....+..+.++++|++|++++|.+.+..|..+..+++|+.++++.+....
T Consensus 134 n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 134 NPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp CCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 5444 3333 22224445555555544 2333334444445555555555555444444444444444444444433211
Q ss_pred CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhh---ccccCcEEeCCCccccc----ccChhh
Q 046668 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM---NLRALVSLDLSCNSFTG----RIPNSI 232 (381)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~---~l~~L~~L~Ls~n~l~~----~~~~~~ 232 (381)
. .......+++|+.|++++|++++..+..+. ....++.++++++.+.+ .+|..+
T Consensus 213 ~-------------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 213 L-------------------LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp H-------------------HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred c-------------------hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence 0 011123356777777777777655443322 34556666666666654 356678
Q ss_pred hccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCC
Q 046668 233 GALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL 278 (381)
Q Consensus 233 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 278 (381)
..+++|++|++++|.++...+..+..+++|++|++++|++.|.||.
T Consensus 274 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 8889999999999999844334458889999999999999988874
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.9e-31 Score=266.69 Aligned_cols=286 Identities=21% Similarity=0.278 Sum_probs=222.1
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCc-Ccc-cCCccCCC-------CCCCCEEEccCCccceeCCc--ccc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNN-FTG-NIPISLGM-------LSSLQSLNLRKNSLSGQIPA--SFQ 69 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~--~~~ 69 (381)
+|++|+|++|.+.+.+|..|.++++|++|+|++|+ +++ .+|..+.. +++|++|++++|.++ .+|. .|.
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 58999999999999999999999999999999998 887 67765544 459999999999999 7888 899
Q ss_pred CCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCC-CCEEeccCCcCCCCcCcccccccc--
Q 046668 70 NCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS-LHVLDLADNHLSGSIPKCISNISS-- 146 (381)
Q Consensus 70 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~-- 146 (381)
++++|++|++++|.+. .+| .+. .+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+..+..
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp-~~~-~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE-AFG-TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC-CCC-TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred cCCCCCEEECCCCCcc-cch-hhc-CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence 9999999999999998 888 554 7899999999999999 78888999999 999999999998 78888877654
Q ss_pred cccccccCCccccCC-CCC----CCccccceEEEEeccccc-----hhhhcccccEEEccCCcccccCchh-hhc-----
Q 046668 147 MVTANFSIGTDVQYP-SVS----TGKYVEDALLVLKGKAVE-----YNTILKLMRLIDLSKNKFSGEIPSE-IMN----- 210 (381)
Q Consensus 147 L~~l~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~L~L~~n~~~~~~~~~-~~~----- 210 (381)
|+.++++.+...... ... ...........+.++.+. ....+++|+.|++++|++. .+|.. +..
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNY 724 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCC
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccc
Confidence 999999888765432 111 111112333333333222 2235678888888888887 44443 322
Q ss_pred --cccCcEEeCCCcccccccChhhh--ccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCC------CcceecCCCC-
Q 046668 211 --LRALVSLDLSCNSFTGRIPNSIG--ALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSN------NNLSGKIPLS- 279 (381)
Q Consensus 211 --l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~------N~l~~~~~~~- 279 (381)
+++|++|+|++|.++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|++++ |++.+.+|..
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred cccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 338888888888888 7777776 78888888888888886 677778888888888866 6666666653
Q ss_pred CCCCccCCCcccCCCC
Q 046668 280 TQLQSFDPSSFTGNRL 295 (381)
Q Consensus 280 ~~l~~l~~~~~~~n~l 295 (381)
..++.|+.+++++|.+
T Consensus 803 ~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI 818 (876)
T ss_dssp GGCSSCCEEECCSSCC
T ss_pred hcCCCCCEEECCCCCC
Confidence 4567777888888876
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.5e-30 Score=239.51 Aligned_cols=279 Identities=17% Similarity=0.141 Sum_probs=202.9
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 48899999999998777889999999999999999998888889999999999999999986656667999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCC------------------CcCcccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG------------------SIPKCIS 142 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~~ 142 (381)
+|++.+..+..+. .+++|++|++++|.+++.. +..+++|++|++++|.+.+ .+|. .
T Consensus 150 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~ 223 (390)
T 3o6n_A 150 NNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--P 223 (390)
T ss_dssp SSCCCBCCTTTTS-SCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--C
T ss_pred CCccCccChhhcc-CCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccc--c
Confidence 9999844444444 7899999999999988542 3334444444444444331 1111 1
Q ss_pred cccccccccccCCccccCCCCCCCccccceEEEEecc-----ccchhhhcccccEEEccCCcccccCchhhhccccCcEE
Q 046668 143 NISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK-----AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSL 217 (381)
Q Consensus 143 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 217 (381)
..++|+.++++.+.....+.... ........+.+. ....+..+++|+.|++++|++++ +|..+..+++|++|
T Consensus 224 ~~~~L~~L~l~~n~l~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL 300 (390)
T ss_dssp CCSSCCEEECCSSCCCCCGGGGG--CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEE
T ss_pred ccccccEEECCCCCCcccHHHcC--CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEE
Confidence 12355555555555443322111 112222222222 23456678999999999999985 45666889999999
Q ss_pred eCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCC
Q 046668 218 DLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGN 293 (381)
Q Consensus 218 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n 293 (381)
++++|.+. .+|..+..+++|++|++++|.++.. + +..+++|+.|++++|++.|.+.. ..+..+....+.++
T Consensus 301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~ 371 (390)
T 3o6n_A 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDA 371 (390)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCC
T ss_pred ECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhccccc
Confidence 99999999 6777788999999999999999854 3 66788999999999999987543 23334444444433
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=251.31 Aligned_cols=138 Identities=22% Similarity=0.235 Sum_probs=121.4
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|++++..+.+|.++++|++|+|++|.+++..+.+|.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus 53 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 132 (570)
T 2z63_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (570)
T ss_dssp SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECC
T ss_pred CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecC
Confidence 48999999999998888889999999999999999998888999999999999999999987666679999999999999
Q ss_pred CCcCcc-cCChhHHhcCCCCcEEEcccccccccCCcCccCCCCC----CEEeccCCcCCCCcCc
Q 046668 81 ENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSL----HVLDLADNHLSGSIPK 139 (381)
Q Consensus 81 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~ 139 (381)
+|.+.+ .+|..+. .+++|++|++++|.+++..+..+..+++| ++|++++|.+.+..+.
T Consensus 133 ~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 133 HNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (570)
T ss_dssp SSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred CCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHH
Confidence 999875 4687776 89999999999999998877888888888 8999999887654443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.9e-30 Score=251.73 Aligned_cols=284 Identities=17% Similarity=0.141 Sum_probs=210.4
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|+++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 48899999999998888899999999999999999998888889999999999999999997767778999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCC------------------CcCcccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG------------------SIPKCIS 142 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~~ 142 (381)
+|.+.+..|..+. .+++|++|++++|.+++.. +..+++|++|++++|.+.+ .++..
T Consensus 156 ~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~-- 229 (597)
T 3oja_B 156 NNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-- 229 (597)
T ss_dssp SSCCCBCCTTTTT-TCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--
T ss_pred CCcCCCCChhhhh-cCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--
Confidence 9999865555555 7999999999999988653 3334455555554444432 11111
Q ss_pred cccccccccccCCccccCCCCCCCccccceEEEEec-----cccchhhhcccccEEEccCCcccccCchhhhccccCcEE
Q 046668 143 NISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG-----KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSL 217 (381)
Q Consensus 143 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 217 (381)
..++|+.++++.+.....+.... ........+.+ ..+..+..+++|+.|++++|.+++ +|..+..+++|+.|
T Consensus 230 ~~~~L~~L~L~~n~l~~~~~l~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L 306 (597)
T 3oja_B 230 VNVELTILKLQHNNLTDTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL 306 (597)
T ss_dssp CCSCCCEEECCSSCCCCCGGGGG--CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCChhhcc--CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEE
Confidence 11345555555544433221111 11122222222 233456678999999999999986 56667889999999
Q ss_pred eCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCC-CCC
Q 046668 218 DLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGN-RLC 296 (381)
Q Consensus 218 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n-~l~ 296 (381)
+|++|.+. .+|..+..+++|++|++++|.+++. + +..+++|+.|++++|++.|.+.. ..+..+....+.++ ..|
T Consensus 307 ~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C 381 (597)
T 3oja_B 307 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHC 381 (597)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCC
T ss_pred ECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccC
Confidence 99999999 7888889999999999999999854 3 56788999999999999997643 23445555555555 566
Q ss_pred CC
Q 046668 297 GS 298 (381)
Q Consensus 297 ~~ 298 (381)
+.
T Consensus 382 ~~ 383 (597)
T 3oja_B 382 KI 383 (597)
T ss_dssp CT
T ss_pred Cc
Confidence 65
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=9.1e-30 Score=244.59 Aligned_cols=286 Identities=19% Similarity=0.223 Sum_probs=184.3
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccce-eCCccccCCCCCCEEeC
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG-QIPASFQNCTKLVMLDI 79 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 79 (381)
+|++|++++|++++..|+.|.++++|++|+|++|.+++ +|.. .+++|++|++++|.+++ ..|..|.++++|++|++
T Consensus 46 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L 122 (520)
T 2z7x_B 46 KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122 (520)
T ss_dssp TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEE
T ss_pred cccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEe
Confidence 58999999999998889999999999999999999994 5555 79999999999999986 46899999999999999
Q ss_pred cCCcCcccCChhHHhcCCCC--cEEEcccccc--cccCCcCccCCC----------------------------------
Q 046668 80 GENEFVGNVPTWIGIRFSSL--MILNLRSNKF--RGVLPNQLCGLT---------------------------------- 121 (381)
Q Consensus 80 ~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~---------------------------------- 121 (381)
++|.+.+ ..+. .+++| ++|++++|.+ .+..|..+..+.
T Consensus 123 ~~n~l~~---~~~~-~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 198 (520)
T 2z7x_B 123 STTHLEK---SSVL-PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198 (520)
T ss_dssp EESSCCG---GGGG-GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEE
T ss_pred cCcccch---hhcc-ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccc
Confidence 9999874 2232 56777 8888888877 444454444422
Q ss_pred -------------------------------------------------CCCEEeccCCcCCCCcCccc-----cccccc
Q 046668 122 -------------------------------------------------SLHVLDLADNHLSGSIPKCI-----SNISSM 147 (381)
Q Consensus 122 -------------------------------------------------~L~~L~L~~n~l~~~~~~~~-----~~l~~L 147 (381)
+|++|++++|.+.+.+|..+ ..+++|
T Consensus 199 ~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L 278 (520)
T 2z7x_B 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278 (520)
T ss_dssp ECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEE
T ss_pred ccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCcee
Confidence 57777777777777777766 566666
Q ss_pred ccccccCCccccCCC------------------------CC-CCccccceEEEEecc-----ccchhhhcccccEEEccC
Q 046668 148 VTANFSIGTDVQYPS------------------------VS-TGKYVEDALLVLKGK-----AVEYNTILKLMRLIDLSK 197 (381)
Q Consensus 148 ~~l~~~~~~~~~~~~------------------------~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~L~~L~L~~ 197 (381)
+.++++.+.. .+|. .. ...........+.+. .+..+..+++|+.|++++
T Consensus 279 ~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 357 (520)
T 2z7x_B 279 SIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357 (520)
T ss_dssp EEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred Eeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence 5555544433 2220 00 011111222222222 233344566677777777
Q ss_pred Ccccc--cCchhhhccccCcEEeCCCcccccccCh-hhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668 198 NKFSG--EIPSEIMNLRALVSLDLSCNSFTGRIPN-SIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274 (381)
Q Consensus 198 n~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 274 (381)
|++++ ..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..|..+. ++|+.|++++|+++
T Consensus 358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~- 434 (520)
T 2z7x_B 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK- 434 (520)
T ss_dssp SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-
T ss_pred CccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-
Confidence 77664 3445566677777777777776653443 255556666666666666544444332 45555555555555
Q ss_pred cCCC-CCCCCccCCCcccCCCCCC
Q 046668 275 KIPL-STQLQSFDPSSFTGNRLCG 297 (381)
Q Consensus 275 ~~~~-~~~l~~l~~~~~~~n~l~~ 297 (381)
.+|. ...++.++.+++.+|.+..
T Consensus 435 ~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 435 SIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred ccchhhhcCCCCCEEECCCCcCCc
Confidence 3332 2344455555555554443
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=7.8e-31 Score=253.71 Aligned_cols=271 Identities=21% Similarity=0.209 Sum_probs=187.0
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccce-eCCccccCCCCCCEEeC
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG-QIPASFQNCTKLVMLDI 79 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 79 (381)
+|++|++++|++++..|++|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..+.++++|++|++
T Consensus 51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC
Confidence 58999999999998888999999999999999999998888889999999999999999986 35678999999999999
Q ss_pred cCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcc-cccccccccccccCCccc
Q 046668 80 GENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKC-ISNISSMVTANFSIGTDV 158 (381)
Q Consensus 80 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~~~~~~~~ 158 (381)
++|...+.+|...+..+++|++|++++|.+++..|..+..+++|++|+++.|.+. .+|.. +..+++|+.++++.+...
T Consensus 131 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCT
T ss_pred CCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccc
Confidence 9998655777544448999999999999999888888887777666666666654 23322 233455555555444333
Q ss_pred cCCC-------------------------------------------------------CCC------Ccc---------
Q 046668 159 QYPS-------------------------------------------------------VST------GKY--------- 168 (381)
Q Consensus 159 ~~~~-------------------------------------------------------~~~------~~~--------- 168 (381)
..+. ... ...
T Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 289 (549)
T 2z81_A 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289 (549)
T ss_dssp TCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEE
T ss_pred cccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccc
Confidence 2110 000 000
Q ss_pred --------------------ccceEEEEeccc----cch-hhhcccccEEEccCCcccccCch---hhhccccCcEEeCC
Q 046668 169 --------------------VEDALLVLKGKA----VEY-NTILKLMRLIDLSKNKFSGEIPS---EIMNLRALVSLDLS 220 (381)
Q Consensus 169 --------------------~~~~~~~~~~~~----~~~-~~~~~~L~~L~L~~n~~~~~~~~---~~~~l~~L~~L~Ls 220 (381)
.......+.+.. +.. ...+++|+.|++++|++.+..|. .++.+++|++|+++
T Consensus 290 ~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls 369 (549)
T 2z81_A 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369 (549)
T ss_dssp SCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECT
T ss_pred ccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEcc
Confidence 000111111111 111 13567788888888887765543 25667777777777
Q ss_pred CcccccccC--hhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcce
Q 046668 221 CNSFTGRIP--NSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273 (381)
Q Consensus 221 ~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~ 273 (381)
+|.+++..+ ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 370 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp TSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred CCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 777764322 34666777777777777776 45655666666666666666654
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=5.4e-30 Score=251.89 Aligned_cols=113 Identities=20% Similarity=0.235 Sum_probs=99.7
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|+|++|+|+++.+++|.++++|++|+|++|++++..+.+|.++++|++|++++|.+++..+..|+++++|++|+++
T Consensus 77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls 156 (635)
T 4g8a_A 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 156 (635)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence 58999999999998888899999999999999999998888899999999999999999998777889999999999999
Q ss_pred CCcCcc-cCChhHHhcCCCCcEEEcccccccccCC
Q 046668 81 ENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGVLP 114 (381)
Q Consensus 81 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 114 (381)
+|.+.+ .+|..+. .+++|++|++++|.+++..+
T Consensus 157 ~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 157 HNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp SSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECG
T ss_pred cCccccCCCchhhc-cchhhhhhcccCcccccccc
Confidence 999874 3455555 79999999999988765433
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.5e-29 Score=227.42 Aligned_cols=278 Identities=20% Similarity=0.291 Sum_probs=169.3
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|+++++.++. ++ .+..+++|++|++++|.+++..+ |.++++|++|++++|.++. + .++.++++|++|+++
T Consensus 45 ~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECT
T ss_pred cccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECc
Confidence 46788888888774 33 37778888888888888874433 7788888888888888774 3 358888888888888
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|.+. .++. +. .+++|++|++++|..... ...+..+++|++|++++|.+.+..+ +..+++|+.++++.+.....
T Consensus 119 ~n~i~-~~~~-~~-~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 119 EDNIS-DISP-LA-NLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp TSCCC-CCGG-GT-TCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred CCccc-Cchh-hc-cCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 88876 4444 33 678888888888755433 3347777778888888777764332 66777777777777665544
Q ss_pred CCCCCCccccceEEEEeccc---cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCC
Q 046668 161 PSVSTGKYVEDALLVLKGKA---VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES 237 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 237 (381)
+.... ........+.+.. ...+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ + ..+..+++
T Consensus 193 ~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~ 266 (347)
T 4fmz_A 193 SPLAS--LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTK 266 (347)
T ss_dssp GGGGG--CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTT
T ss_pred ccccC--CCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCC
Confidence 43111 1111122221111 1114445666666666666654333 5566666666666666653 2 23555566
Q ss_pred CCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCCCCC
Q 046668 238 ILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLCGS 298 (381)
Q Consensus 238 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l~~~ 298 (381)
|++|++++|.+++. +.+..+++|+.|++++|++.+..+.. ..++.++.+++.+|.+.+.
T Consensus 267 L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 267 LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 66666666665532 23455556666666666555433321 2344555555555555443
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=3.4e-30 Score=228.27 Aligned_cols=234 Identities=18% Similarity=0.239 Sum_probs=199.0
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-cceeCCccccCCCCCCEEeC
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-LSGQIPASFQNCTKLVMLDI 79 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 79 (381)
+|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|. +....|..|.++++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 47899999999998877889999999999999999998889999999999999999997 88777899999999999999
Q ss_pred cCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668 80 GENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ 159 (381)
Q Consensus 80 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~ 159 (381)
++|++.+..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 113 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------- 175 (285)
T 1ozn_A 113 DRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG---------------- 175 (285)
T ss_dssp TTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT----------------
T ss_pred CCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC----------------
Confidence 99999854455444 7999999999999999777777999999999999999988443334443
Q ss_pred CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239 (381)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 239 (381)
+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 176 ---------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 176 ---------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp ---------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred ---------------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 45588999999999988899999999999999999999976667799999999
Q ss_pred EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668 240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS 279 (381)
Q Consensus 240 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 279 (381)
+|++++|.+....+. ......++.+..+.+.+.|..|..
T Consensus 229 ~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 229 YLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp EEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGG
T ss_pred EEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchH
Confidence 999999999754332 111234566667888888888753
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2e-29 Score=244.39 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=127.0
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 82 (381)
+++++++|++++ +|..+. ++|++|++++|.+++..+.+|.++++|++|++++|.+++..|++|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 689999999995 776553 89999999999999888899999999999999999999988999999999999999999
Q ss_pred cCcccCChhHHhcCCCCcEEEccccccccc-CCcCccCCCCCCEEeccCCcCCCCcCccccccccc--ccccccCCcc
Q 046668 83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM--VTANFSIGTD 157 (381)
Q Consensus 83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~l~~~~~~~ 157 (381)
++. .+|.. .+++|++|++++|.+++. .|..|.++++|++|++++|.+.+. .+..+++| +.++++.+..
T Consensus 111 ~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred cCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 998 78876 689999999999999964 357899999999999999999853 45555555 8888777654
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.5e-29 Score=226.52 Aligned_cols=247 Identities=20% Similarity=0.218 Sum_probs=207.0
Q ss_pred CCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcc--cCChhHHhcCCCCcEEE
Q 046668 26 LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG--NVPTWIGIRFSSLMILN 103 (381)
Q Consensus 26 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~ 103 (381)
-+.++.+++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.+.. ..+..+. .+++|++|+
T Consensus 9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~ 84 (306)
T 2z66_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLD 84 (306)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEE
T ss_pred CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEE
Confidence 367899999998 5666554 699999999999996666678999999999999999872 2355665 799999999
Q ss_pred cccccccccCCcCccCCCCCCEEeccCCcCCCCcC-cccccccccccccccCCccccCCCCCCCccccceEEEEeccccc
Q 046668 104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP-KCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE 182 (381)
Q Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (381)
+++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|+.++++.+...... ..
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------~~ 144 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-------------------NG 144 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-------------------TT
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-------------------hh
Confidence 9999998 466678999999999999999986554 67899999999999887654322 22
Q ss_pred hhhhcccccEEEccCCcccc-cCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCC
Q 046668 183 YNTILKLMRLIDLSKNKFSG-EIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTF 261 (381)
Q Consensus 183 ~~~~~~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 261 (381)
.+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 23457889999999999986 57888999999999999999999888899999999999999999999877778899999
Q ss_pred CCeeeCCCCcceecCCCC-CCC-CccCCCcccCCCCC
Q 046668 262 LSRLKLSNNNLSGKIPLS-TQL-QSFDPSSFTGNRLC 296 (381)
Q Consensus 262 L~~L~l~~N~l~~~~~~~-~~l-~~l~~~~~~~n~l~ 296 (381)
|+.|++++|++++..+.. ..+ +.++.+++.+|.+.
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 999999999999877653 344 47888888888653
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=2e-29 Score=227.45 Aligned_cols=222 Identities=22% Similarity=0.274 Sum_probs=196.0
Q ss_pred CCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEE
Q 046668 23 WLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL 102 (381)
Q Consensus 23 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 102 (381)
..+++.|+|++|.++ .+|..+.++++|++|++++|.++ .+|..+.++++|++|++++|.+. .+|..+. .+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCEE
Confidence 478999999999998 77888888999999999999999 88999999999999999999998 8898877 89999999
Q ss_pred EcccccccccCCcCccC---------CCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceE
Q 046668 103 NLRSNKFRGVLPNQLCG---------LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDAL 173 (381)
Q Consensus 103 ~L~~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 173 (381)
++++|.+.+.+|..+.. +++|++|++++|.++ .+|..+..
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~------------------------------ 204 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN------------------------------ 204 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG------------------------------
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC------------------------------
Confidence 99998888788877654 899999999999988 66766554
Q ss_pred EEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCc
Q 046668 174 LVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIP 253 (381)
Q Consensus 174 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 253 (381)
+++|+.|++++|.+++ +|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|
T Consensus 205 -------------l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 205 -------------LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp -------------CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred -------------CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 4458889999999985 56679999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCC
Q 046668 254 QSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGN 293 (381)
Q Consensus 254 ~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n 293 (381)
..+..+++|++|++++|++.+.+|.. ..++.+..+.+..+
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 99999999999999999999999864 45666666655555
No 49
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=3.3e-28 Score=221.69 Aligned_cols=276 Identities=22% Similarity=0.327 Sum_probs=224.1
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.+++.. . +.++++|++|++++|.+++. ++|.++++|++|++++|.+.+. +. +.++++|++|+++
T Consensus 67 ~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 67 NLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLG 140 (347)
T ss_dssp TCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECT
T ss_pred CccEEEccCCccccch-h-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECC
Confidence 5899999999998543 3 89999999999999999853 3689999999999999999854 33 8999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|.....++. +. .+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|+.++++.+.....
T Consensus 141 ~n~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 141 ANHNLSDLSP-LS-NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp TCTTCCCCGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCcccccc-hh-hCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCC
Confidence 9976645544 44 79999999999999885533 88999999999999999854 33 88899999999988876655
Q ss_pred CCCCCCccccceEEEEeccc---cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCC
Q 046668 161 PSVSTGKYVEDALLVLKGKA---VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES 237 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 237 (381)
+... .........+.+.. ...+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++ + ..+..+++
T Consensus 215 ~~~~--~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~ 288 (347)
T 4fmz_A 215 TPVA--NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQ 288 (347)
T ss_dssp GGGG--GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTT
T ss_pred chhh--cCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCC
Confidence 4421 22223333333332 22266789999999999999854 468899999999999999985 4 45889999
Q ss_pred CCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCC
Q 046668 238 ILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRL 295 (381)
Q Consensus 238 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l 295 (381)
|++|++++|.+++..+..+..+++|+.|++++|++++..| ...++.++.+++.+|.+
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 9999999999998888999999999999999999988766 56688888888888865
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=3.3e-28 Score=214.42 Aligned_cols=229 Identities=23% Similarity=0.219 Sum_probs=190.5
Q ss_pred EEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCc
Q 046668 4 ILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE 83 (381)
Q Consensus 4 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 83 (381)
..+-.+..++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3455555665 5666543 579999999999998888899999999999999999998888899999999999999999
Q ss_pred CcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCC-cCcccccccccccccccCCccccCCC
Q 046668 84 FVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGS-IPKCISNISSMVTANFSIGTDVQYPS 162 (381)
Q Consensus 84 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~ 162 (381)
+.+..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..
T Consensus 88 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~------------------- 147 (276)
T 2z62_A 88 IQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN------------------- 147 (276)
T ss_dssp CCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-------------------
T ss_pred cCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-------------------
Confidence 9854444444 899999999999999977777899999999999999998753 4655544
Q ss_pred CCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCc----EEeCCCcccccccChhhhccCCC
Q 046668 163 VSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALV----SLDLSCNSFTGRIPNSIGALESI 238 (381)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L 238 (381)
+++|+.|++++|++++..+..+..+++|+ +|++++|.+++..+..+ ...+|
T Consensus 148 ------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L 202 (276)
T 2z62_A 148 ------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRL 202 (276)
T ss_dssp ------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCE
T ss_pred ------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcc
Confidence 45588899999999988888888888887 89999999995555544 44589
Q ss_pred CEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCC
Q 046668 239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLST 280 (381)
Q Consensus 239 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 280 (381)
++|++++|.+++..+..+..+++|+.|++++|++.|.|+...
T Consensus 203 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp EEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred cEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 999999999997777778899999999999999999998653
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=224.91 Aligned_cols=270 Identities=18% Similarity=0.162 Sum_probs=220.2
Q ss_pred EEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCc
Q 046668 4 ILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE 83 (381)
Q Consensus 4 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 83 (381)
..+.+++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|+
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 4678888888 5676654 589999999999998877799999999999999999998888999999999999999999
Q ss_pred CcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCc-CCCCcCcccccccccccccccCCccccCC
Q 046668 84 FVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNH-LSGSIPKCISNISSMVTANFSIGTDVQYP 161 (381)
Q Consensus 84 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 161 (381)
+. .+|...+..+++|++|++++|.++...+ ..+..+++|++|++++|. +....+..+..+++|+.++++.+......
T Consensus 112 l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 98 6777755589999999999999995444 478999999999999994 66556778999999999998877654321
Q ss_pred CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhh---hccCCC
Q 046668 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSI---GALESI 238 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L 238 (381)
...+..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+ ...+.+
T Consensus 191 -------------------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l 251 (353)
T 2z80_A 191 -------------------PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251 (353)
T ss_dssp -------------------TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred -------------------HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence 2233457789999999999875554556678999999999999986554433 245678
Q ss_pred CEEeccCCcCcc----cCchhhhCCCCCCeeeCCCCcceecCCCC--CCCCccCCCcccCCCCCC
Q 046668 239 LSIDFSANQLYG----EIPQSISSLTFLSRLKLSNNNLSGKIPLS--TQLQSFDPSSFTGNRLCG 297 (381)
Q Consensus 239 ~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~N~l~~~~~~~--~~l~~l~~~~~~~n~l~~ 297 (381)
+.++++++.+.+ .+|..+..+++|+.|++++|+++ .+|.. ..++.++.+++.+|.+.+
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 899999998875 46778899999999999999998 55543 567888999999996544
No 52
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=6.5e-28 Score=228.40 Aligned_cols=283 Identities=20% Similarity=0.308 Sum_probs=161.4
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|++++|.+++..+ +.++++|++|+++
T Consensus 69 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 142 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEE
T ss_pred CCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECC
Confidence 46778888887775433 7777777777777777774443 6777777777777777764322 6666666666666
Q ss_pred CCcCcccCChh-------------------HHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccc
Q 046668 81 ENEFVGNVPTW-------------------IGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI 141 (381)
Q Consensus 81 ~n~l~~~~~~~-------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 141 (381)
+|.+.+ ++.. ....+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..| +
T Consensus 143 ~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 217 (466)
T 1o6v_A 143 SNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--L 217 (466)
T ss_dssp EEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--c
Confidence 665542 2210 012455666666666666532 235555666666666666554333 4
Q ss_pred ccccccccccccCCccccCCCCCC--------------------CccccceEEEEeccc---cchhhhcccccEEEccCC
Q 046668 142 SNISSMVTANFSIGTDVQYPSVST--------------------GKYVEDALLVLKGKA---VEYNTILKLMRLIDLSKN 198 (381)
Q Consensus 142 ~~l~~L~~l~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~L~~n 198 (381)
+.+++|+.++++.+.....+.... ..........+.+.. ...+..++.|+.|++++|
T Consensus 218 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 297 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred cccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC
Confidence 444555555554444332221110 011111122221111 111344556666666666
Q ss_pred cccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCC
Q 046668 199 KFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL 278 (381)
Q Consensus 199 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 278 (381)
++.+..+ +..+++|++|++++|.+++..| +..+++|++|++++|.+++. ..+..+++|+.|++++|++++..|
T Consensus 298 ~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 370 (466)
T 1o6v_A 298 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP- 370 (466)
T ss_dssp CCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-
T ss_pred cccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-
Confidence 6654333 5566666666666666664443 55667777777777766643 346667777777777777776665
Q ss_pred CCCCCccCCCcccCCCCCCCCCC
Q 046668 279 STQLQSFDPSSFTGNRLCGSPLP 301 (381)
Q Consensus 279 ~~~l~~l~~~~~~~n~l~~~~~~ 301 (381)
...++.++.+++.+|.+.+.|..
T Consensus 371 ~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 371 LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp GTTCTTCCEEECCCEEEECCCBC
T ss_pred hhcCCCCCEEeccCCcccCCchh
Confidence 45566677777777766665544
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=4e-28 Score=229.81 Aligned_cols=256 Identities=23% Similarity=0.326 Sum_probs=178.0
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+++.|+++++.++. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|+++
T Consensus 47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 47899999999884 55 48889999999999999986544 8999999999999999986544 9999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCC-------------------cCccCCCCCCEEeccCCcCCCCcCccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-------------------NQLCGLTSLHVLDLADNHLSGSIPKCI 141 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~ 141 (381)
+|.+. .++. +. .+++|++|++++|.+.+... ..+..+++|++|++++|.+.+. ..+
T Consensus 121 ~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l 195 (466)
T 1o6v_A 121 NNQIT-DIDP-LK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVL 195 (466)
T ss_dssp SSCCC-CCGG-GT-TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred CCCCC-CChH-Hc-CCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhh
Confidence 99998 4554 43 89999999999998874311 1366788999999999998743 458
Q ss_pred ccccccccccccCCccccCCCCCCCccccceEEEEeccc---cchhhhcccccEEEccCCcccccCchhhhccccCcEEe
Q 046668 142 SNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA---VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLD 218 (381)
Q Consensus 142 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 218 (381)
..+++|+.++++.+.....+.... ........+.+.. ...+..+++|+.|++++|.+.+..+ +..+++|++|+
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~~~~--l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 271 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 271 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGGG--CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred ccCCCCCEEEecCCcccccccccc--cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEE
Confidence 899999999999887665443211 2222223332222 2334556677777777777664443 56666666666
Q ss_pred CCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceec
Q 046668 219 LSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGK 275 (381)
Q Consensus 219 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 275 (381)
+++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++.
T Consensus 272 l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 272 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred CCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence 66666653322 4555555555555555553322 44455555555555555443
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.2e-29 Score=239.14 Aligned_cols=219 Identities=17% Similarity=0.121 Sum_probs=171.5
Q ss_pred CCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEE
Q 046668 23 WLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL 102 (381)
Q Consensus 23 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 102 (381)
+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| |.++++|++|++++|.+. .+| ..++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE-----ECTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC-----CCCCcCEE
Confidence 3478888888888887777788888888888888888876554 788888888888888876 333 24788888
Q ss_pred EcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccc
Q 046668 103 NLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE 182 (381)
Q Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (381)
++++|.+.+..+. .+++|++|++++|.+++..|..++.+++|+.|+++.+.....+ +.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------------~~ 162 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------------------FA 162 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-------------------GG
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-------------------hH
Confidence 8888888866543 3577888888888888777778888888888888777644211 11
Q ss_pred hh-hhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCC
Q 046668 183 YN-TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTF 261 (381)
Q Consensus 183 ~~-~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 261 (381)
.+ ..++.|+.|++++|.+++..+ ...+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~ 238 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred HHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCC
Confidence 22 246789999999999986633 3458999999999999995 55558899999999999999995 6777888999
Q ss_pred CCeeeCCCCcceec
Q 046668 262 LSRLKLSNNNLSGK 275 (381)
Q Consensus 262 L~~L~l~~N~l~~~ 275 (381)
|+.|++++|++.|.
T Consensus 239 L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 239 LEHFDLRGNGFHCG 252 (487)
T ss_dssp CCEEECTTCCBCHH
T ss_pred CCEEEcCCCCCcCc
Confidence 99999999999854
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.9e-28 Score=229.02 Aligned_cols=227 Identities=22% Similarity=0.222 Sum_probs=201.2
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
++++|+|++|++++..+..|.++++|++|+|++|.++++.+..|.++++|++|+|++|.++...+..|.++++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 47899999999999889999999999999999999999999999999999999999999998888889999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEccc-ccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRS-NKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ 159 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~ 159 (381)
+|++. .+|...+..+++|++|++++ +.+....+..|.++++|++|++++|.+++ +| .+..+++|+.|+++.+....
T Consensus 156 ~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 156 NNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 99998 66666565899999999998 55665555679999999999999999984 44 58889999999998887543
Q ss_pred CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239 (381)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 239 (381)
.+ ...+..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+
T Consensus 233 ~~-------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 233 IR-------------------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp EC-------------------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred cC-------------------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 22 23345678899999999999999999999999999999999999977777889999999
Q ss_pred EEeccCCcCc
Q 046668 240 SIDFSANQLY 249 (381)
Q Consensus 240 ~L~L~~n~l~ 249 (381)
+|++++|.+.
T Consensus 294 ~L~L~~Np~~ 303 (452)
T 3zyi_A 294 ELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcC
Confidence 9999999876
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-29 Score=228.34 Aligned_cols=264 Identities=16% Similarity=0.138 Sum_probs=200.8
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
++..+++.+.+.......+..+++|++|+|++|.+++..|..|.++++|++|++++|.+++..+ +.++++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3455666666665555556677889999999999988777889999999999999999886554 88999999999999
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP 161 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 161 (381)
|++. .++ ..++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|+.++++.+.....+
T Consensus 90 n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 90 NYVQ-ELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SEEE-EEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred Cccc-ccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9887 343 3578999999999988665443 578999999999998777778888999999998887654321
Q ss_pred CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 241 (381)
. ......++.|+.|++++|.+++..+ ...+++|++|++++|.++ .+|..+..+++|++|
T Consensus 161 ~------------------~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L 219 (317)
T 3o53_A 161 F------------------AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219 (317)
T ss_dssp G------------------GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEE
T ss_pred H------------------HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCC-cchhhhcccCcccEE
Confidence 1 1111346789999999999986532 335899999999999999 555568899999999
Q ss_pred eccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC--CCCCccCCCcccCC-CCCCC
Q 046668 242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS--TQLQSFDPSSFTGN-RLCGS 298 (381)
Q Consensus 242 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~--~~l~~l~~~~~~~n-~l~~~ 298 (381)
++++|.++ .+|..+..+++|+.|++++|++.|.+... ..++.++.+.+.++ .+.|.
T Consensus 220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred ECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 99999998 56777888999999999999998543221 33445555555544 44443
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.8e-28 Score=227.60 Aligned_cols=227 Identities=21% Similarity=0.213 Sum_probs=200.5
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+++.|+|++|++++..+..|.++++|++|+|++|.++++.+.+|.++++|++|+|++|.++...+..|.++++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 47899999999998888999999999999999999998888999999999999999999997777889999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEccc-ccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRS-NKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ 159 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~ 159 (381)
+|++. .++...+..+++|++|++++ +.+....+..|.++++|++|++++|.++ .+| .+..+++|+.|+++.+....
T Consensus 145 ~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 145 NNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 99998 66665555899999999998 5556555668999999999999999998 555 48889999999999887654
Q ss_pred CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239 (381)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 239 (381)
.+. ..+..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+
T Consensus 222 ~~~-------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 222 IRP-------------------GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp ECT-------------------TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred cCh-------------------hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 322 2334578899999999999999999999999999999999999977778889999999
Q ss_pred EEeccCCcCc
Q 046668 240 SIDFSANQLY 249 (381)
Q Consensus 240 ~L~L~~n~l~ 249 (381)
.|++++|.+.
T Consensus 283 ~L~L~~Np~~ 292 (440)
T 3zyj_A 283 RIHLHHNPWN 292 (440)
T ss_dssp EEECCSSCEE
T ss_pred EEEcCCCCcc
Confidence 9999999875
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=3.5e-27 Score=207.09 Aligned_cols=209 Identities=22% Similarity=0.255 Sum_probs=178.1
Q ss_pred CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEE
Q 046668 24 LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILN 103 (381)
Q Consensus 24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 103 (381)
.+.++++++++.++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+. .+|..++..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 46788999999998 4666554 68999999999998777778999999999999999987 67777665789999999
Q ss_pred cccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccch
Q 046668 104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEY 183 (381)
Q Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (381)
+++|.++...+..|..+++|++|++++|.+++..+..+..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------- 131 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS---------------------------------------- 131 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT----------------------------------------
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc----------------------------------------
Confidence 9999999777778889999999999999988655554444
Q ss_pred hhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCC
Q 046668 184 NTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLS 263 (381)
Q Consensus 184 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 263 (381)
+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 132 ---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 132 ---LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp ---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ---CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 45588899999999877777789999999999999999977777789999999999999999977777788999999
Q ss_pred eeeCCCCcceecCCCC
Q 046668 264 RLKLSNNNLSGKIPLS 279 (381)
Q Consensus 264 ~L~l~~N~l~~~~~~~ 279 (381)
.|++++|++.|.|+..
T Consensus 209 ~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 209 MLQLQENPWDCTCNGI 224 (270)
T ss_dssp EEECCSSCBCCSSSSS
T ss_pred EEEecCCCeeCCCccH
Confidence 9999999999998743
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=8.8e-30 Score=228.48 Aligned_cols=242 Identities=21% Similarity=0.277 Sum_probs=137.1
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCc-ccCCccCC-------CCCCCCEEEccCCccceeCCccc--cCC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFT-GNIPISLG-------MLSSLQSLNLRKNSLSGQIPASF--QNC 71 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--~~l 71 (381)
|+.|++++|.+ .+|..+... |+.|+|++|.+. ...|..+. ++++|++|++++|.+++..|..+ .++
T Consensus 45 L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 45 LEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp CTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred ceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 44555566666 455544443 666677777663 33444443 56777777777777776666655 677
Q ss_pred CCCCEEeCcCCcCcccCChhHHhcC-----CCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCC--cCccc--c
Q 046668 72 TKLVMLDIGENEFVGNVPTWIGIRF-----SSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGS--IPKCI--S 142 (381)
Q Consensus 72 ~~L~~L~L~~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~ 142 (381)
++|++|++++|++.+. |..+. .+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+ .
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 7777777777777643 54444 34 6777777777777766666777777777777777765533 12222 3
Q ss_pred cccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCccccc---CchhhhccccCcEEeC
Q 046668 143 NISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE---IPSEIMNLRALVSLDL 219 (381)
Q Consensus 143 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~---~~~~~~~l~~L~~L~L 219 (381)
.+ ++|+.|++++|++++. ....+..+++|++|++
T Consensus 199 ~l-------------------------------------------~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 199 KF-------------------------------------------PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp SC-------------------------------------------TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred cC-------------------------------------------CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEEC
Confidence 33 4455555555555421 1122344555666666
Q ss_pred CCcccccccC-hhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCCC
Q 046668 220 SCNSFTGRIP-NSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLC 296 (381)
Q Consensus 220 s~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l~ 296 (381)
++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |....++.++.+++.+|.+.
T Consensus 236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred CCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 6665554442 23344555666666666555 4444333 4555666666655544 33444555555555555444
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.2e-28 Score=219.89 Aligned_cols=244 Identities=18% Similarity=0.173 Sum_probs=207.8
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|++++..|..|.++++|++|+|++|.+++..+ |..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence 47899999999998888899999999999999999986654 889999999999999998533 34899999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccc-ccccccccccccCCcccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI-SNISSMVTANFSIGTDVQ 159 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~~~~~~~~~ 159 (381)
+|.+.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.++++.+....
T Consensus 108 ~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 108 NNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp SSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 9999843332 46889999999999998878889999999999999999997777766 478999999999887654
Q ss_pred CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239 (381)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 239 (381)
.+... .+++|+.|++++|++++..+ .+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 184 ~~~~~---------------------~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 184 VKGQV---------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp EECCC---------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred ccccc---------------------ccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 32221 26789999999999996544 5899999999999999999 6788899999999
Q ss_pred EEeccCCcCc-ccCchhhhCCCCCCeeeCCCC-cceecCCC
Q 046668 240 SIDFSANQLY-GEIPQSISSLTFLSRLKLSNN-NLSGKIPL 278 (381)
Q Consensus 240 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~ 278 (381)
+|++++|.+. +.+|.++..+++|+.++++++ .+.+..+.
T Consensus 241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred EEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 9999999998 778888999999999999954 55554443
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=9.6e-27 Score=219.05 Aligned_cols=274 Identities=18% Similarity=0.140 Sum_probs=194.0
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + +.++++|++|+++
T Consensus 43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD 114 (457)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence 478999999999964 5 688999999999999999864 3 88999999999999999864 3 8899999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|++.+ +| +. .+++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..+++|+.++++.+....+
T Consensus 115 ~N~l~~-l~--~~-~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 115 TNKLTK-LD--VS-QNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp SSCCSC-CC--CT-TCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCe-ec--CC-CCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 999984 55 43 789999999999999964 3788899999999999655455 477888999999888876655
Q ss_pred CCCCCCccccceEEEEeccccc--hhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccC--
Q 046668 161 PSVSTGKYVEDALLVLKGKAVE--YNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE-- 236 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-- 236 (381)
+ . ..........+.+.... .+..+++|+.|++++|++++ +| +..+++|+.|++++|.+++..+..+..++
T Consensus 186 ~-l--~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L 259 (457)
T 3bz5_A 186 D-V--SQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL 259 (457)
T ss_dssp C-C--TTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEE
T ss_pred c-c--ccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEE
Confidence 4 1 11122222222222111 24456777777777777775 34 66777777777777777755443333333
Q ss_pred -----CCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC---------CCCCccCCCcccCCCCCCCC
Q 046668 237 -----SILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS---------TQLQSFDPSSFTGNRLCGSP 299 (381)
Q Consensus 237 -----~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~---------~~l~~l~~~~~~~n~l~~~~ 299 (381)
+|+.|++++|.+.+.+| +..+++|+.|++++|+..+.+|.. ...+.++.+++.+|.+.+.+
T Consensus 260 ~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~ 334 (457)
T 3bz5_A 260 HCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD 334 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred eccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc
Confidence 34455555555444444 346678888888888766654431 22345556667777676654
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=5.4e-29 Score=223.32 Aligned_cols=226 Identities=24% Similarity=0.263 Sum_probs=185.6
Q ss_pred ccEEEcCCCccc-ccCCcccc-------CCCCCCEEECcCCcCcccCCccC--CCCCCCCEEEccCCccceeCCccccCC
Q 046668 2 IRILKLGENHFS-GEIPDCWM-------NWLDLLVLNLGNNNFTGNIPISL--GMLSSLQSLNLRKNSLSGQIPASFQNC 71 (381)
Q Consensus 2 L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l 71 (381)
|++|++++|.++ ..+|..+. ++++|++|+|++|.+++..|..+ ..+++|++|++++|.+++. |..+.++
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 567899999984 45666665 79999999999999998888876 8999999999999999976 8888887
Q ss_pred -----CCCCEEeCcCCcCcccCChhHHhcCCCCcEEEccccccccc--CCcC--ccCCCCCCEEeccCCcCCCCcCcccc
Q 046668 72 -----TKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV--LPNQ--LCGLTSLHVLDLADNHLSGSIPKCIS 142 (381)
Q Consensus 72 -----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~ 142 (381)
++|++|++++|++.+..|..+. .+++|++|++++|.+.+. .+.. +..+++|++|++++|.+++ ++....
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~ 221 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCS 221 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHH
Confidence 9999999999999855545555 899999999999997654 2333 3889999999999999872 111100
Q ss_pred cccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCc-hhhhccccCcEEeCCC
Q 046668 143 NISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP-SEIMNLRALVSLDLSC 221 (381)
Q Consensus 143 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~Ls~ 221 (381)
.....+++|+.|++++|++++..| ..+..+++|++|++++
T Consensus 222 ---------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 222 ---------------------------------------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp ---------------------------------------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred ---------------------------------------HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence 011235679999999999998775 4567789999999999
Q ss_pred cccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668 222 NSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274 (381)
Q Consensus 222 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 274 (381)
|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 263 N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 263 TGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999 7787766 8999999999999965 66 8899999999999999875
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=1.2e-26 Score=205.64 Aligned_cols=208 Identities=23% Similarity=0.237 Sum_probs=180.1
Q ss_pred ccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCC
Q 046668 20 WMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSL 99 (381)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 99 (381)
+.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+. .++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 678899999999999998 5565554 68999999999999888899999999999999999998 44443 378999
Q ss_pred cEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEecc
Q 046668 100 MILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK 179 (381)
Q Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (381)
++|++++|.++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~------------------------------------ 122 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG------------------------------------ 122 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT------------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC------------------------------------
Confidence 99999999998 67888899999999999999998655555554
Q ss_pred ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCC
Q 046668 180 AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSL 259 (381)
Q Consensus 180 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 259 (381)
+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+...
T Consensus 123 -------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~ 194 (290)
T 1p9a_G 123 -------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194 (290)
T ss_dssp -------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred -------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc
Confidence 445888999999999877888899999999999999999666667788999999999999999 677777888
Q ss_pred CCCCeeeCCCCcceecCCC
Q 046668 260 TFLSRLKLSNNNLSGKIPL 278 (381)
Q Consensus 260 ~~L~~L~l~~N~l~~~~~~ 278 (381)
++|+.+++++|++.|.|..
T Consensus 195 ~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 195 HLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCCSEEECCSCCBCCSGGG
T ss_pred ccCCeEEeCCCCccCcCcc
Confidence 8999999999999998754
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.1e-26 Score=204.61 Aligned_cols=210 Identities=22% Similarity=0.219 Sum_probs=178.7
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 48999999999998877789999999999999999998888899999999999999999998888999999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEccccccccc-CCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ 159 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~ 159 (381)
+|.+.+..+..+. .+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+.+++
T Consensus 109 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----------- 176 (276)
T 2z62_A 109 ETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----------- 176 (276)
T ss_dssp TSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred CCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-----------
Confidence 9999843333444 799999999999999864 588999999999999999999865555555544432
Q ss_pred CCCCCCCccccceEEEEeccccchhhhccccc-EEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMR-LIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238 (381)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 238 (381)
.+. .|++++|.+.+..+..+.. .+|++|++++|.+++..+..+..+++|
T Consensus 177 -----------------------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 177 -----------------------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp -----------------------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred -----------------------------ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccc
Confidence 233 7899999998666655544 489999999999996666678899999
Q ss_pred CEEeccCCcCcccC
Q 046668 239 LSIDFSANQLYGEI 252 (381)
Q Consensus 239 ~~L~L~~n~l~~~~ 252 (381)
++|++++|++....
T Consensus 227 ~~L~l~~N~~~c~c 240 (276)
T 2z62_A 227 QKIWLHTNPWDCSC 240 (276)
T ss_dssp CEEECCSSCBCCCT
T ss_pred cEEEccCCcccccC
Confidence 99999999998543
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=7.3e-26 Score=198.70 Aligned_cols=202 Identities=20% Similarity=0.236 Sum_probs=176.1
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
.+.+++++++++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.++...+..|.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 578999999999 5676553 6899999999999988888999999999999999999977777889999999999999
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP 161 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 161 (381)
|++. .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..
T Consensus 95 n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------ 155 (270)
T 2o6q_A 95 NKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK------------------ 155 (270)
T ss_dssp SCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred CcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC------------------
Confidence 9998 666665558999999999999999888888999999999999999998544444443
Q ss_pred CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 241 (381)
+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 156 -------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 156 -------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp -------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -------------------------CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 4558899999999998777789999999999999999997666778899999999
Q ss_pred eccCCcCcc
Q 046668 242 DFSANQLYG 250 (381)
Q Consensus 242 ~L~~n~l~~ 250 (381)
++++|.+..
T Consensus 211 ~l~~N~~~c 219 (270)
T 2o6q_A 211 QLQENPWDC 219 (270)
T ss_dssp ECCSSCBCC
T ss_pred EecCCCeeC
Confidence 999999864
No 66
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=5.7e-26 Score=213.78 Aligned_cols=250 Identities=18% Similarity=0.167 Sum_probs=145.0
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.+++. | +.++++|++|++++|.+++. + ++++++|++|++++|.+++ +| +.++++|++|+++
T Consensus 65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence 478888888888864 3 77888888888888888754 3 7788888888888888875 33 7788888888888
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|++.+ ++ +. .+++|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.++++.+.....
T Consensus 136 ~N~l~~-l~--l~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 136 RNTLTE-ID--VS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp TSCCSC-CC--CT-TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred CCccce-ec--cc-cCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence 888774 43 32 5667777777776433333 35566666666666666664 33 55556666666655554433
Q ss_pred CCCCCCccccceEEEEeccccch--hhhcccccEEEccCCcccccCchhhhc----------------------------
Q 046668 161 PSVSTGKYVEDALLVLKGKAVEY--NTILKLMRLIDLSKNKFSGEIPSEIMN---------------------------- 210 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~L~~n~~~~~~~~~~~~---------------------------- 210 (381)
+ ...........+....+.. +..+++|+.|++++|++++..+..+..
T Consensus 207 ~---l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~ 283 (457)
T 3bz5_A 207 D---LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE 283 (457)
T ss_dssp C---CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred c---cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccccc
Confidence 1 1111111122221111100 334566666666666666544433333
Q ss_pred -cccCcEEeCCCcccccccCh--------hhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668 211 -LRALVSLDLSCNSFTGRIPN--------SIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274 (381)
Q Consensus 211 -l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 274 (381)
+++|+.|++++|...+.+|. .+...++|++|++++|++++. + +..+++|+.|++++|++++
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 34444444444443332221 133445556666666666542 2 5555666666666666554
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-26 Score=219.74 Aligned_cols=219 Identities=20% Similarity=0.160 Sum_probs=180.5
Q ss_pred CCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCC
Q 046668 45 GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH 124 (381)
Q Consensus 45 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (381)
..+++|++|+|++|.+++..|..|.++++|++|+|++|.+.+..| +. .+++|++|+|++|.+++..+ .++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~l~~l~~-----~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNYVQELLV-----GPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT-TCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc-cCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence 345589999999999998888999999999999999999986555 43 79999999999999996533 38999
Q ss_pred EEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccC
Q 046668 125 VLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI 204 (381)
Q Consensus 125 ~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 204 (381)
+|++++|.+.+..+. .+++|+.++++.+.....+ ...+..+++|+.|++++|.+++..
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~-------------------~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR-------------------DLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGG-------------------GBCGGGGSSEEEEECTTSCCCEEE
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCC-------------------chhhcCCCCCCEEECCCCCCCCcC
Confidence 999999999865544 3577888988887755332 223345788999999999999888
Q ss_pred chhhh-ccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCC
Q 046668 205 PSEIM-NLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQ 283 (381)
Q Consensus 205 ~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~ 283 (381)
|..+. .+++|++|+|++|.+++..+ ...+++|++|++++|.+++..| .+..+++|+.|++++|.+++..+....++
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~ 237 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQ 237 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCC
Confidence 88776 79999999999999996533 3468999999999999996544 58899999999999999997544446678
Q ss_pred ccCCCcccCCCCC
Q 046668 284 SFDPSSFTGNRLC 296 (381)
Q Consensus 284 ~l~~~~~~~n~l~ 296 (381)
.+..+++.+|.+.
T Consensus 238 ~L~~L~l~~N~l~ 250 (487)
T 3oja_A 238 NLEHFDLRGNGFH 250 (487)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEcCCCCCc
Confidence 8888999999553
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=6e-25 Score=206.65 Aligned_cols=122 Identities=22% Similarity=0.296 Sum_probs=70.2
Q ss_pred CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEE
Q 046668 24 LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILN 103 (381)
Q Consensus 24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 103 (381)
++|++|++++|.+++ +| +|.++++|++|++++|.+++ +|..+ .+|++|++++|++. .+| .+. .+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~-~l~-~~~-~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLE-ELP-ELQ-NLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCS-SCC-CCT-TCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCC-cCc-ccc-CCCCCCEEE
Confidence 466777777776664 44 46666677777777766663 44322 36666666666665 355 233 566666666
Q ss_pred cccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+++|.+++ +|.. .++|++|++++|.+. .+| .+..+++|+.++++.+....+
T Consensus 202 l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 202 ADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp CCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC
T ss_pred CCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc
Confidence 66666653 2322 135666666666665 444 255666666666655554443
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=7.8e-26 Score=212.69 Aligned_cols=264 Identities=19% Similarity=0.200 Sum_probs=173.6
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCC-------------CEEEccCCccceeCCcc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSL-------------QSLNLRKNSLSGQIPAS 67 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~~~~~ 67 (381)
+|++|++++|.+ +.+|..++++++|++|++++|.+.+..|..++++.+| ++|++++|.+++ +|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 478999999999 6999999999999999999999999999999988865 999999999885 4442
Q ss_pred ccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccccccc
Q 046668 68 FQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147 (381)
Q Consensus 68 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 147 (381)
.++|++|++++|.+.+ +|. .+++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++++++|
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred ---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 4789999999999984 774 34789999999998884 3321 2689999999999885 66 58889999
Q ss_pred ccccccCCccccCCCCCCCccccceEEEEeccc---cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCccc
Q 046668 148 VTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA---VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSF 224 (381)
Q Consensus 148 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l 224 (381)
+.++++.+....+|.... ......+.+.. ...+..+++|+.|++++|.+++ +|.. .++|++|++++|.+
T Consensus 156 ~~L~l~~N~l~~lp~~~~----~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 156 KIIDVDNNSLKKLPDLPP----SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNIL 227 (454)
T ss_dssp CEEECCSSCCSCCCCCCT----TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCC
T ss_pred CEEECCCCcCcccCCCcc----cccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcC
Confidence 999988887766554321 11222222211 1234567778888888887774 3322 24788888888888
Q ss_pred ccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCCCC
Q 046668 225 TGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCG 297 (381)
Q Consensus 225 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l~~ 297 (381)
. .+|. ++.+++|++|++++|++++ +|.. +++|+.|++++|++.+ +|. ..+.++.+++++|.+.+
T Consensus 228 ~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~--~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 228 E-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPE--LPQSLTFLDVSENIFSG 291 (454)
T ss_dssp S-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSE
T ss_pred C-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCc--ccCcCCEEECcCCccCc
Confidence 7 6663 7788888888888888874 4432 3678888888888775 343 23566666677776554
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=7.7e-25 Score=193.89 Aligned_cols=198 Identities=20% Similarity=0.204 Sum_probs=173.3
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+++++++++++++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..+. ..+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence 4789999999998 5665553 7899999999999988889999999999999999999865443 789999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|++. .+|..+. .+++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..
T Consensus 86 ~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----------------- 146 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP----------------- 146 (290)
T ss_dssp SSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------------
T ss_pred CCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc-----------------
Confidence 99998 7887665 7999999999999999777788999999999999999998554444443
Q ss_pred CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCE
Q 046668 161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 240 (381)
+++|+.|++++|+++...+..|..+++|++|++++|.++ .+|..+...+.|+.
T Consensus 147 --------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 147 --------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199 (290)
T ss_dssp --------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE
T ss_pred --------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCe
Confidence 455889999999999777777899999999999999999 78888888899999
Q ss_pred EeccCCcCc
Q 046668 241 IDFSANQLY 249 (381)
Q Consensus 241 L~L~~n~l~ 249 (381)
+++++|.+.
T Consensus 200 l~L~~Np~~ 208 (290)
T 1p9a_G 200 AFLHGNPWL 208 (290)
T ss_dssp EECCSCCBC
T ss_pred EEeCCCCcc
Confidence 999999986
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.3e-25 Score=195.68 Aligned_cols=217 Identities=20% Similarity=0.189 Sum_probs=180.4
Q ss_pred EcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCc
Q 046668 6 KLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85 (381)
Q Consensus 6 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 85 (381)
++..+.+... ..+..+++|+.|++++|.++. . ..+..+++|++|++++|.+.+ + ..+.++++|++|++++|.+.
T Consensus 25 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 25 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC
T ss_pred HhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC
Confidence 3445555433 335678999999999999873 3 357889999999999999985 3 47899999999999999998
Q ss_pred ccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCC
Q 046668 86 GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVST 165 (381)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 165 (381)
.++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 99 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------------------- 155 (272)
T 3rfs_A 99 -SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK---------------------- 155 (272)
T ss_dssp -CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------------------
T ss_pred -ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc----------------------
Confidence 455544448999999999999999877778999999999999999998555544444
Q ss_pred CccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccC
Q 046668 166 GKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSA 245 (381)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 245 (381)
+++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 156 ---------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 156 ---------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp ---------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ---------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 45588999999999988888889999999999999999987787889999999999999
Q ss_pred CcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668 246 NQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS 279 (381)
Q Consensus 246 n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 279 (381)
|.+.+ .++.|+.+++..|.++|.+|..
T Consensus 215 N~~~~-------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 215 NPWDC-------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp SCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred CCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence 98874 3557999999999999998864
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=9.7e-26 Score=198.09 Aligned_cols=206 Identities=19% Similarity=0.258 Sum_probs=174.0
Q ss_pred CCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEE
Q 046668 23 WLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL 102 (381)
Q Consensus 23 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 102 (381)
+.++..+++..+.+.+.. .+..+++|++|++++|.++. + ..+..+++|++|++++|.+.+ ++ .+. .+++|++|
T Consensus 18 ~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L 90 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-IS-ALK-ELTNLTYL 90 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-CG-GGT-TCTTCCEE
T ss_pred HHHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-ch-hhc-CCCCCCEE
Confidence 345556677777766442 34578999999999999873 3 358899999999999999974 44 444 79999999
Q ss_pred EcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccc
Q 046668 103 NLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE 182 (381)
Q Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (381)
++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------------------------------- 131 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK--------------------------------------- 131 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------------------------------------
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc---------------------------------------
Confidence 99999999887788899999999999999998655554544
Q ss_pred hhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCC
Q 046668 183 YNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFL 262 (381)
Q Consensus 183 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 262 (381)
+++|+.|++++|++++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|
T Consensus 132 ----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 132 ----LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp ----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ----CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 4558899999999998888888999999999999999997777778999999999999999998888888999999
Q ss_pred CeeeCCCCcceecCCC
Q 046668 263 SRLKLSNNNLSGKIPL 278 (381)
Q Consensus 263 ~~L~l~~N~l~~~~~~ 278 (381)
+.|++++|++.|.+|.
T Consensus 208 ~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 208 QYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CEEECCSSCBCCCTTT
T ss_pred CEEEccCCCccccCcH
Confidence 9999999999998875
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=5.5e-24 Score=206.28 Aligned_cols=242 Identities=25% Similarity=0.344 Sum_probs=140.9
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
++.|++++|.++ .+|..+. ++|++|+|++|.++ .+|. .+++|++|+|++|.++ .+|. .+++|++|++++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECS
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcC
Confidence 677888888887 5666554 68888888888887 3444 4678888888888877 3444 667788888888
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccc-----------------cc
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCIS-----------------NI 144 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----------------~l 144 (381)
|++. .+|. .+++|+.|++++|.++. +|.. +++|++|++++|.+++ +|..+. .+
T Consensus 111 N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~ 180 (622)
T 3g06_A 111 NPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLP 180 (622)
T ss_dssp CCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCC
T ss_pred CcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccC
Confidence 8776 4554 35677777777777773 3432 3667777777777663 333221 12
Q ss_pred cccccccccCCccccCCCCCCCccccceEEEEeccccchh-hhcccccEEEccCCcccccCchhhhccccCcEEeCCCcc
Q 046668 145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN-TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNS 223 (381)
Q Consensus 145 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~ 223 (381)
++|+.++++.+....++... .......+.++.+..+ ..+++|+.|++++|++++ +| ..+++|+.|++++|.
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~~----~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTLP----SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNR 252 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCC----TTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC
T ss_pred CCCcEEECCCCCCCCCCCcc----chhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCC
Confidence 44444555544444333211 1111111111111111 113456666666666653 33 344566666666666
Q ss_pred cccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCC
Q 046668 224 FTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP 277 (381)
Q Consensus 224 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 277 (381)
++ .+|. .+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+
T Consensus 253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 66 3443 3456666666666666 455556666666666666666655433
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=8.3e-25 Score=188.43 Aligned_cols=206 Identities=17% Similarity=0.200 Sum_probs=166.0
Q ss_pred ccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-cceeCCccccCCCCCCEEeCcC-CcCcccCC
Q 046668 12 FSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-LSGQIPASFQNCTKLVMLDIGE-NEFVGNVP 89 (381)
Q Consensus 12 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~ 89 (381)
++ .+|. +. ++|++|++++|.++++.+.+|.++++|++|++++|. ++...+.+|.++++|++|++++ |++. .++
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~ 97 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YID 97 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EEC
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcC
Confidence 44 4565 33 389999999999998888899999999999999997 8877778999999999999998 9998 566
Q ss_pred hhHHhcCCCCcEEEcccccccccCCcCccCCCCCC---EEeccCC-cCCCCcCcccccccccccccccCCccccCCCCCC
Q 046668 90 TWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH---VLDLADN-HLSGSIPKCISNISSMVTANFSIGTDVQYPSVST 165 (381)
Q Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 165 (381)
...+..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~---------------------- 153 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG---------------------- 153 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT----------------------
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc----------------------
Confidence 5555489999999999999995 565 88888888 9999999 887444444544
Q ss_pred CccccceEEEEeccccchhhhccccc-EEEccCCcccccCchhhhccccCcEEeCCCcc-cccccChhhhcc-CCCCEEe
Q 046668 166 GKYVEDALLVLKGKAVEYNTILKLMR-LIDLSKNKFSGEIPSEIMNLRALVSLDLSCNS-FTGRIPNSIGAL-ESILSID 242 (381)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~ 242 (381)
+++|+ .|++++|+++...+..+.. ++|++|++++|. +++..+..+..+ ++|++|+
T Consensus 154 ---------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 154 ---------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp ---------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred ---------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 44577 8888888888555555555 899999999995 886667788888 9999999
Q ss_pred ccCCcCcccCchhhhCCCCCCeeeCCCCc
Q 046668 243 FSANQLYGEIPQSISSLTFLSRLKLSNNN 271 (381)
Q Consensus 243 L~~n~l~~~~~~~l~~l~~L~~L~l~~N~ 271 (381)
+++|.+++ +|.. .+++|+.|+++++.
T Consensus 212 l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 212 VSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccc-CChh--HhccCceeeccCcc
Confidence 99999984 4443 67789999998764
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=2e-24 Score=186.11 Aligned_cols=209 Identities=16% Similarity=0.227 Sum_probs=168.6
Q ss_pred cCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCc-CcccCChhHHhcCCCCcEEEccc-cccccc
Q 046668 35 NFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE-FVGNVPTWIGIRFSSLMILNLRS-NKFRGV 112 (381)
Q Consensus 35 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~ 112 (381)
.++ .+|. +. .+|++|++++|.+++..+.+|.++++|++|++++|+ +. .++...+..+++|++|++++ |.++..
T Consensus 22 ~l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 22 DIQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp SCS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred Ccc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 355 4565 54 489999999999998888899999999999999997 76 66665555899999999998 999977
Q ss_pred CCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccE
Q 046668 113 LPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRL 192 (381)
Q Consensus 113 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 192 (381)
.+..|.++++|++|++++|.+++ +|. +..+++| +.|+.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L----------------------------------------~~L~~ 134 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYST----------------------------------------DIFFI 134 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBC----------------------------------------CSEEE
T ss_pred CHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccc----------------------------------------ccccE
Confidence 77889999999999999999984 554 4443332 22458
Q ss_pred EEccCC-cccccCchhhhccccCc-EEeCCCcccccccChhhhccCCCCEEeccCCc-CcccCchhhhCC-CCCCeeeCC
Q 046668 193 IDLSKN-KFSGEIPSEIMNLRALV-SLDLSCNSFTGRIPNSIGALESILSIDFSANQ-LYGEIPQSISSL-TFLSRLKLS 268 (381)
Q Consensus 193 L~L~~n-~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~l~ 268 (381)
|++++| .+++..+..|..+++|+ +|++++|.++...+..+.. ++|++|++++|+ +++..+..+..+ ++|+.|+++
T Consensus 135 L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp EEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred EECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 999999 89877778899999999 9999999999444444544 899999999995 987777888889 999999999
Q ss_pred CCcceecCCCCCCCCccCCCcccCC
Q 046668 269 NNNLSGKIPLSTQLQSFDPSSFTGN 293 (381)
Q Consensus 269 ~N~l~~~~~~~~~l~~l~~~~~~~n 293 (381)
+|+++. +|.. .++.++.+.+.++
T Consensus 214 ~N~l~~-l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 214 QTSVTA-LPSK-GLEHLKELIARNT 236 (239)
T ss_dssp TCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred CCcccc-CChh-HhccCceeeccCc
Confidence 999984 4443 5677777766654
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=4.4e-26 Score=210.65 Aligned_cols=247 Identities=15% Similarity=0.199 Sum_probs=186.6
Q ss_pred cCCccccCCCCCCEEECcCCcCccc----CCccCCCCCCCCEEEccCCc---cceeCCccc-------cCCCCCCEEeCc
Q 046668 15 EIPDCWMNWLDLLVLNLGNNNFTGN----IPISLGMLSSLQSLNLRKNS---LSGQIPASF-------QNCTKLVMLDIG 80 (381)
Q Consensus 15 ~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~L~ 80 (381)
.++..+..+++|++|+|++|.+++. ++..|..+++|++|+|++|. +.+.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4566777889999999999988765 33457789999999999864 444455444 688999999999
Q ss_pred CCcCcc----cCChhHHhcCCCCcEEEcccccccccCCcC----ccCC---------CCCCEEeccCCcCC-CCcC---c
Q 046668 81 ENEFVG----NVPTWIGIRFSSLMILNLRSNKFRGVLPNQ----LCGL---------TSLHVLDLADNHLS-GSIP---K 139 (381)
Q Consensus 81 ~n~l~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~L~~n~l~-~~~~---~ 139 (381)
+|.+.+ .+|..+. .+++|++|+|++|.++...+.. +..+ ++|++|++++|+++ ..++ .
T Consensus 103 ~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHH-hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 999875 3555665 7899999999999887443333 3333 89999999999987 3444 4
Q ss_pred ccccccccccccccCCccccCCCCCCCccccceEEEEeccccc-hhhhcccccEEEccCCccc----ccCchhhhccccC
Q 046668 140 CISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE-YNTILKLMRLIDLSKNKFS----GEIPSEIMNLRAL 214 (381)
Q Consensus 140 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~n~~~----~~~~~~~~~l~~L 214 (381)
.+..+++|+.++++.+...... . ..... .+..+++|+.|++++|.++ ..+|..+..+++|
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g--------------~-~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEG--------------I-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHH--------------H-HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred HHHhCCCcCEEECcCCCCCHhH--------------H-HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 6677888888888877543100 0 00111 3455788999999999996 5677888999999
Q ss_pred cEEeCCCcccccc----cChhhhc--cCCCCEEeccCCcCcc----cCchhh-hCCCCCCeeeCCCCcceecCC
Q 046668 215 VSLDLSCNSFTGR----IPNSIGA--LESILSIDFSANQLYG----EIPQSI-SSLTFLSRLKLSNNNLSGKIP 277 (381)
Q Consensus 215 ~~L~Ls~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~l~~N~l~~~~~ 277 (381)
++|+|++|.+++. ++..+.. +++|++|++++|.++. .+|..+ ..+++|++|++++|++++..+
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 9999999999865 4556643 8999999999999997 477777 668999999999999987653
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=2.2e-25 Score=199.65 Aligned_cols=227 Identities=21% Similarity=0.220 Sum_probs=177.1
Q ss_pred ccEEEcCCCcccccCCc---cccCCCCCCEEECcCCcCcccCCccC--CCCCCCCEEEccCCccceeCC----ccccCCC
Q 046668 2 IRILKLGENHFSGEIPD---CWMNWLDLLVLNLGNNNFTGNIPISL--GMLSSLQSLNLRKNSLSGQIP----ASFQNCT 72 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~ 72 (381)
++.+++.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 56788888876532111 12346789999999999998999888 899999999999999986544 4456799
Q ss_pred CCCEEeCcCCcCcccCChhHHhcCCCCcEEEccccccccc---C-CcCccCCCCCCEEeccCCcCCCCcCcccccccccc
Q 046668 73 KLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV---L-PNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMV 148 (381)
Q Consensus 73 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 148 (381)
+|++|++++|++.+..+..+. .+++|++|++++|.+.+. . +..+..+++|++|++++|+++ .++....
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~------ 217 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCA------ 217 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHH------
T ss_pred CCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHH------
Confidence 999999999999854445444 899999999999997642 2 233478899999999999986 2222100
Q ss_pred cccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhcc---ccCcEEeCCCcccc
Q 046668 149 TANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNL---RALVSLDLSCNSFT 225 (381)
Q Consensus 149 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~Ls~n~l~ 225 (381)
.....+++|+.|++++|++.+..|..+..+ ++|++|++++|.++
T Consensus 218 ---------------------------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 218 ---------------------------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp ---------------------------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred ---------------------------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 011235679999999999998877777766 69999999999999
Q ss_pred cccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668 226 GRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274 (381)
Q Consensus 226 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 274 (381)
.+|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 265 -~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 265 -QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred -chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 7777664 8999999999999954 43 6788999999999999863
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=1.4e-24 Score=188.43 Aligned_cols=211 Identities=21% Similarity=0.217 Sum_probs=135.3
Q ss_pred CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEE
Q 046668 24 LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILN 103 (381)
Q Consensus 24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 103 (381)
.+.++++++++.++ .+|..+. +++++|++++|.+.+..+.+|.++++|++|++++|.+.+ ++...+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEE
Confidence 35677888888877 5555554 577888888888877777777777777777777777763 3333222566666666
Q ss_pred cccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccch
Q 046668 104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEY 183 (381)
Q Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (381)
+++|.+++..+..|..+++|++|++++|.++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------------------------------- 120 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLK------------------------------------------------- 120 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------------------------------
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCC-------------------------------------------------
Confidence 6666666554455555555555555555544
Q ss_pred hhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCC
Q 046668 184 NTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLS 263 (381)
Q Consensus 184 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 263 (381)
+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 121 ------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 121 ------------------SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp ------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ------------------CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 34444566677777888888877755555677788888888888888866666778888888
Q ss_pred eeeCCCCcceecCCCCCCC-Ccc-----CCCcccCCCCCCCCCCCCCC
Q 046668 264 RLKLSNNNLSGKIPLSTQL-QSF-----DPSSFTGNRLCGSPLPNNCF 305 (381)
Q Consensus 264 ~L~l~~N~l~~~~~~~~~l-~~l-----~~~~~~~n~l~~~~~~~~c~ 305 (381)
.|++++|++.|.+.....+ .++ ......++.+++.|....|.
T Consensus 183 ~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 230 (251)
T 3m19_A 183 TITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCS 230 (251)
T ss_dssp EEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBT
T ss_pred EEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccC
Confidence 8888888888773322111 111 11233455677777777885
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=8.1e-27 Score=220.68 Aligned_cols=295 Identities=16% Similarity=0.137 Sum_probs=170.8
Q ss_pred CccEEEcCCCcccccCCccc-cCCC----CCCEEECcCCcCcc----cCCccCCCCCCCCEEEccCCccceeCCcccc--
Q 046668 1 GIRILKLGENHFSGEIPDCW-MNWL----DLLVLNLGNNNFTG----NIPISLGMLSSLQSLNLRKNSLSGQIPASFQ-- 69 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~-~~l~----~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-- 69 (381)
+|++|++++|.+....+..+ ..++ +|++|+|++|.++. .++..|..+++|++|++++|.+.+..+..+.
T Consensus 57 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 136 (461)
T 1z7x_W 57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG 136 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH
Confidence 47889999998876444443 3355 69999999998873 4577888888999999999888654443332
Q ss_pred ---CCCCCCEEeCcCCcCcccC----ChhHHhcCCCCcEEEcccccccccCCcCcc-----CCCCCCEEeccCCcCCCC-
Q 046668 70 ---NCTKLVMLDIGENEFVGNV----PTWIGIRFSSLMILNLRSNKFRGVLPNQLC-----GLTSLHVLDLADNHLSGS- 136 (381)
Q Consensus 70 ---~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~- 136 (381)
..++|++|++++|++.+.. +..+. .+++|++|++++|.+....+..+. ..++|++|++++|.+++.
T Consensus 137 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLR-AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HhcCCCcceEEECCCCCCCHHHHHHHHHHHh-hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 3567888888888887432 33333 578888888888887654333332 356888888888888753
Q ss_pred ---cCcccccccccccccccCCccccCC-----CCCCCccccceEEEEeccc---------cchhhhcccccEEEccCCc
Q 046668 137 ---IPKCISNISSMVTANFSIGTDVQYP-----SVSTGKYVEDALLVLKGKA---------VEYNTILKLMRLIDLSKNK 199 (381)
Q Consensus 137 ---~~~~~~~l~~L~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~L~~L~L~~n~ 199 (381)
++..+..+++|+.++++.+...... ..............+.+.. ...+..+++|+.|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 4666777788888888776532210 0000000111111221111 1122335556666666666
Q ss_pred ccccCchhhhcc-----ccCcEEeCCCcccccc----cChhhhccCCCCEEeccCCcCcccCchhhhC-----CCCCCee
Q 046668 200 FSGEIPSEIMNL-----RALVSLDLSCNSFTGR----IPNSIGALESILSIDFSANQLYGEIPQSISS-----LTFLSRL 265 (381)
Q Consensus 200 ~~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L 265 (381)
+.+..+..+... ++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence 554333333222 4666666666665543 3344455566666666666665433333321 4566666
Q ss_pred eCCCCccee----cCCCC-CCCCccCCCcccCCCCC
Q 046668 266 KLSNNNLSG----KIPLS-TQLQSFDPSSFTGNRLC 296 (381)
Q Consensus 266 ~l~~N~l~~----~~~~~-~~l~~l~~~~~~~n~l~ 296 (381)
++++|+++. .++.. ..++.++.+++.+|.+.
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 666666553 22211 22345555556655443
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=6.4e-25 Score=196.65 Aligned_cols=228 Identities=20% Similarity=0.236 Sum_probs=179.4
Q ss_pred CCCCCCEEECcCCcCcccCCc---cCCCCCCCCEEEccCCccceeCCccc--cCCCCCCEEeCcCCcCcccCC----hhH
Q 046668 22 NWLDLLVLNLGNNNFTGNIPI---SLGMLSSLQSLNLRKNSLSGQIPASF--QNCTKLVMLDIGENEFVGNVP----TWI 92 (381)
Q Consensus 22 ~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~ 92 (381)
+...++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 344688899988877532111 12235679999999999998999888 999999999999999986554 223
Q ss_pred HhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCC--cC--cccccccccccccccCCccccCCCCCCCcc
Q 046668 93 GIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGS--IP--KCISNISSMVTANFSIGTDVQYPSVSTGKY 168 (381)
Q Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 168 (381)
. .+++|++|++++|.+.+..+..+..+++|++|++++|++.+. ++ ..+..
T Consensus 142 ~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~------------------------- 195 (310)
T 4glp_A 142 W-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK------------------------- 195 (310)
T ss_dssp T-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS-------------------------
T ss_pred h-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc-------------------------
Confidence 3 689999999999999988889999999999999999997632 11 11122
Q ss_pred ccceEEEEeccccchhhhcccccEEEccCCcccccCc--h-hhhccccCcEEeCCCcccccccChhhhcc---CCCCEEe
Q 046668 169 VEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP--S-EIMNLRALVSLDLSCNSFTGRIPNSIGAL---ESILSID 242 (381)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~ 242 (381)
+++|+.|++++|+++...+ . .+..+++|++|++++|.+++..|..+..+ ++|++|+
T Consensus 196 ------------------l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 196 ------------------FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp ------------------SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE
T ss_pred ------------------CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE
Confidence 4558888889998863222 1 35788999999999999997778777666 7999999
Q ss_pred ccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCCCC
Q 046668 243 FSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCG 297 (381)
Q Consensus 243 L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l~~ 297 (381)
+++|+++ .+|..+. ++|+.|++++|++++. |....++.++.+++++|.+..
T Consensus 258 Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 258 LSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred CCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence 9999999 6676654 7999999999999863 445678899999999997764
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.6e-25 Score=205.01 Aligned_cols=257 Identities=15% Similarity=0.136 Sum_probs=181.8
Q ss_pred EEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCC----ccCCCCC-CCCEEEccCCccceeCCccccCC-----CC
Q 046668 4 ILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIP----ISLGMLS-SLQSLNLRKNSLSGQIPASFQNC-----TK 73 (381)
Q Consensus 4 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 73 (381)
.++++.|.+++.+|..+...++|++|+|++|.+++..+ .+|.+++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 57899999998888877777779999999999987666 7788888 89999999999997777777765 99
Q ss_pred CCEEeCcCCcCcccCChhHHh---cC-CCCcEEEcccccccccCCcC----ccC-CCCCCEEeccCCcCCCCcCc----c
Q 046668 74 LVMLDIGENEFVGNVPTWIGI---RF-SSLMILNLRSNKFRGVLPNQ----LCG-LTSLHVLDLADNHLSGSIPK----C 140 (381)
Q Consensus 74 L~~L~L~~n~l~~~~~~~~~~---~l-~~L~~L~L~~n~l~~~~~~~----~~~-l~~L~~L~L~~n~l~~~~~~----~ 140 (381)
|++|++++|++.+..+..+.. .+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+++.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998555554432 33 79999999999998655443 334 35999999999999854433 3
Q ss_pred ccccc-ccccccccCCccccCCCCCCCccccceEEEEeccccchhhhc-ccccEEEccCCccccc----Cchhhhc-ccc
Q 046668 141 ISNIS-SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTIL-KLMRLIDLSKNKFSGE----IPSEIMN-LRA 213 (381)
Q Consensus 141 ~~~l~-~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~----~~~~~~~-l~~ 213 (381)
+...+ +|+.++++.+........ .....+... ++|+.|++++|.+.+. ++..+.. .++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~---------------~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~ 226 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCA---------------ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHH---------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT
T ss_pred HhcCCccccEeeecCCCCchhhHH---------------HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC
Confidence 34444 777777777654321100 000112223 4788888888887753 3344444 347
Q ss_pred CcEEeCCCcccccccC----hhhhccCCCCEEeccCCcCccc-------CchhhhCCCCCCeeeCCCCcceec
Q 046668 214 LVSLDLSCNSFTGRIP----NSIGALESILSIDFSANQLYGE-------IPQSISSLTFLSRLKLSNNNLSGK 275 (381)
Q Consensus 214 L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~l~~L~~L~l~~N~l~~~ 275 (381)
|++|+|++|.+++..+ ..+..+++|++|++++|.+.+. ++..+..+++|+.||+++|++...
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 8888888888875443 2345667888888888874422 223455667788888888887654
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.4e-23 Score=182.10 Aligned_cols=178 Identities=21% Similarity=0.240 Sum_probs=142.3
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
.++++++++.++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 468999999998 5676654 6899999999999988888999999999999999999988888999999999999999
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP 161 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 161 (381)
|++. .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..
T Consensus 93 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------ 153 (251)
T 3m19_A 93 NQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK------------------ 153 (251)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred Cccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCc------------------
Confidence 9998 566555558999999999999999777777888999999999999887443333433
Q ss_pred CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCccccc
Q 046668 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTG 226 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 226 (381)
+++|+.|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 154 -------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 154 -------------------------LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp -------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred -------------------------CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 2335666666666665555556666666666666666653
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=3.2e-25 Score=200.94 Aligned_cols=222 Identities=16% Similarity=0.207 Sum_probs=151.0
Q ss_pred ccEEEcCCCcccccCCccccCC--CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCcccee-CCccccCCCCCCEEe
Q 046668 2 IRILKLGENHFSGEIPDCWMNW--LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ-IPASFQNCTKLVMLD 78 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 78 (381)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 567888888766 4556666 8889999998888866555 45688899999998888755 777788888999999
Q ss_pred CcCCcCcccCChhHHhcCCCCcEEEcccc-ccccc-CCcCccCCCCCCEEeccCC-cCCCC-cCcccccccccccccccC
Q 046668 79 IGENEFVGNVPTWIGIRFSSLMILNLRSN-KFRGV-LPNQLCGLTSLHVLDLADN-HLSGS-IPKCISNISSMVTANFSI 154 (381)
Q Consensus 79 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~l~~~~ 154 (381)
+++|.+.+..+..+. .+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++
T Consensus 125 L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~--------- 194 (336)
T 2ast_B 125 LEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS--------- 194 (336)
T ss_dssp CTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC---------
T ss_pred CcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc---------
Confidence 998888766666665 6888999999888 56642 4556777888888888888 77632 334344433
Q ss_pred CccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCC--ccc-ccCchhhhccccCcEEeCCCcc-cccccCh
Q 046668 155 GTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKN--KFS-GEIPSEIMNLRALVSLDLSCNS-FTGRIPN 230 (381)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n--~~~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 230 (381)
.+|+.|++++| .++ +.++..+..+++|++|++++|. +++..+.
T Consensus 195 ---------------------------------~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 195 ---------------------------------ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp ---------------------------------TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred ---------------------------------cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence 04666666666 333 2344555666666666666666 5545555
Q ss_pred hhhccCCCCEEeccCCc-CcccCchhhhCCCCCCeeeCCCC
Q 046668 231 SIGALESILSIDFSANQ-LYGEIPQSISSLTFLSRLKLSNN 270 (381)
Q Consensus 231 ~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~N 270 (381)
.+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 66666666666666663 22221224556666666666666
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=8.9e-24 Score=188.86 Aligned_cols=195 Identities=24% Similarity=0.389 Sum_probs=154.4
Q ss_pred ccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCC
Q 046668 20 WMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSL 99 (381)
Q Consensus 20 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 99 (381)
+..+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +.++++|++|++++|++. .++ .+. .+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCC
Confidence 4568889999999998874 44 57788999999999998885443 888999999999999887 454 344 78899
Q ss_pred cEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEecc
Q 046668 100 MILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK 179 (381)
Q Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (381)
++|++++|.+++. + .+..+++|++|++++|.+++..+ +.
T Consensus 110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~------------------------------------- 148 (308)
T 1h6u_A 110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LA------------------------------------- 148 (308)
T ss_dssp CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GG-------------------------------------
T ss_pred CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--cc-------------------------------------
Confidence 9999999988854 3 38888999999999998874322 22
Q ss_pred ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCC
Q 046668 180 AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSL 259 (381)
Q Consensus 180 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 259 (381)
.+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+
T Consensus 149 ------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l 216 (308)
T 1h6u_A 149 ------GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT 216 (308)
T ss_dssp ------GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTC
T ss_pred ------CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCC
Confidence 25568888999998875444 8889999999999999984433 7888999999999999985543 7888
Q ss_pred CCCCeeeCCCCccee
Q 046668 260 TFLSRLKLSNNNLSG 274 (381)
Q Consensus 260 ~~L~~L~l~~N~l~~ 274 (381)
++|+.|++++|++++
T Consensus 217 ~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 217 SNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEEEEEEEEEC
T ss_pred CCCCEEEccCCeeec
Confidence 999999999999875
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.3e-25 Score=207.49 Aligned_cols=254 Identities=15% Similarity=0.164 Sum_probs=192.9
Q ss_pred ECcCCcCcccCCccCCCCCCCCEEEccCCccceeCC----ccccCCCCCCEEeCcCCc---CcccCChhHH------hcC
Q 046668 30 NLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIP----ASFQNCTKLVMLDIGENE---FVGNVPTWIG------IRF 96 (381)
Q Consensus 30 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~---l~~~~~~~~~------~~l 96 (381)
.++...+. .++..+..+++|++|+|++|.+....+ ..+..+++|++|+|++|. +.+.+|..+. ..+
T Consensus 15 ~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 15 AITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp SCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred CCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence 33333443 566677788999999999999986544 447789999999999964 4445565551 368
Q ss_pred CCCcEEEcccccccc----cCCcCccCCCCCCEEeccCCcCCCCcCcccc----cc---------cccccccccCCcccc
Q 046668 97 SSLMILNLRSNKFRG----VLPNQLCGLTSLHVLDLADNHLSGSIPKCIS----NI---------SSMVTANFSIGTDVQ 159 (381)
Q Consensus 97 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~l~~~~~~~~~ 159 (381)
++|++|+|++|.+.. .++..+..+++|++|++++|.+....+..+. .+ ++|+.++++.+....
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 999999999999986 4667788899999999999998754444443 33 899999988776431
Q ss_pred CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccc-----cCchhhhccccCcEEeCCCcccc----cccCh
Q 046668 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSG-----EIPSEIMNLRALVSLDLSCNSFT----GRIPN 230 (381)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~ 230 (381)
.. . ......+..+++|+.|++++|++.. ..+..+..+++|++|+|++|.++ ..+|.
T Consensus 174 ~~------~---------~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 174 GS------M---------KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp GG------H---------HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred HH------H---------HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 00 0 0011234567899999999999873 23447889999999999999996 46788
Q ss_pred hhhccCCCCEEeccCCcCccc----CchhhhC--CCCCCeeeCCCCccee----cCCCC--CCCCccCCCcccCCCCCCC
Q 046668 231 SIGALESILSIDFSANQLYGE----IPQSISS--LTFLSRLKLSNNNLSG----KIPLS--TQLQSFDPSSFTGNRLCGS 298 (381)
Q Consensus 231 ~~~~l~~L~~L~L~~n~l~~~----~~~~l~~--l~~L~~L~l~~N~l~~----~~~~~--~~l~~l~~~~~~~n~l~~~ 298 (381)
.+..+++|++|++++|.+++. ++..+.. +++|+.|++++|+++. .+|.. ..++.++.+++.+|.+.+.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 889999999999999999865 5666644 8999999999999987 35432 2367888999999988765
Q ss_pred C
Q 046668 299 P 299 (381)
Q Consensus 299 ~ 299 (381)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=2.9e-25 Score=209.98 Aligned_cols=274 Identities=18% Similarity=0.095 Sum_probs=195.1
Q ss_pred CccEEEcCCCcccc----cCCccccCCCCCCEEECcCCcCcccCCccC-----CCCCCCCEEEccCCcccee----CCcc
Q 046668 1 GIRILKLGENHFSG----EIPDCWMNWLDLLVLNLGNNNFTGNIPISL-----GMLSSLQSLNLRKNSLSGQ----IPAS 67 (381)
Q Consensus 1 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~ 67 (381)
+|++|++++|.++. .++..+.++++|++|++++|.+++..+..+ ...++|++|++++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 38999999999884 557888999999999999999875433332 2356899999999988753 3566
Q ss_pred ccCCCCCCEEeCcCCcCcccCChhHHh----cCCCCcEEEccccccccc----CCcCccCCCCCCEEeccCCcCCCCcC-
Q 046668 68 FQNCTKLVMLDIGENEFVGNVPTWIGI----RFSSLMILNLRSNKFRGV----LPNQLCGLTSLHVLDLADNHLSGSIP- 138 (381)
Q Consensus 68 ~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~- 138 (381)
+..+++|++|++++|.+.+..+..+.. ..++|++|++++|.++.. ++..+..+++|++|++++|.+.+...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 777899999999999886433333332 255888888888887753 35556677888888888887764321
Q ss_pred ----cccccccccccccccCCccccC-----CCCCCCccccceEEEEeccccc-----hhhh-----cccccEEEccCCc
Q 046668 139 ----KCISNISSMVTANFSIGTDVQY-----PSVSTGKYVEDALLVLKGKAVE-----YNTI-----LKLMRLIDLSKNK 199 (381)
Q Consensus 139 ----~~~~~l~~L~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~L~~L~L~~n~ 199 (381)
..+..+++|+.++++.+..... +.. ...........+.+.... .+.. .+.|+.|++++|.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 2223467777777777654331 110 000112222333333221 1221 2689999999999
Q ss_pred cccc----CchhhhccccCcEEeCCCcccccccChhhhc-----cCCCCEEeccCCcCcc----cCchhhhCCCCCCeee
Q 046668 200 FSGE----IPSEIMNLRALVSLDLSCNSFTGRIPNSIGA-----LESILSIDFSANQLYG----EIPQSISSLTFLSRLK 266 (381)
Q Consensus 200 ~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~ 266 (381)
+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|+
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 9865 4566778899999999999998765555543 6799999999999986 6788888999999999
Q ss_pred CCCCcceec
Q 046668 267 LSNNNLSGK 275 (381)
Q Consensus 267 l~~N~l~~~ 275 (381)
+++|++++.
T Consensus 405 l~~N~i~~~ 413 (461)
T 1z7x_W 405 LSNNCLGDA 413 (461)
T ss_dssp CCSSSCCHH
T ss_pred CCCCCCCHH
Confidence 999998753
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=7.2e-25 Score=200.61 Aligned_cols=241 Identities=19% Similarity=0.187 Sum_probs=182.3
Q ss_pred CccEEEcCCCcccccCC----ccccCCC-CCCEEECcCCcCcccCCccCCCC-----CCCCEEEccCCccceeCCccc--
Q 046668 1 GIRILKLGENHFSGEIP----DCWMNWL-DLLVLNLGNNNFTGNIPISLGML-----SSLQSLNLRKNSLSGQIPASF-- 68 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~-- 68 (381)
+|++|++++|.+++..+ .+|.+++ +|++|+|++|.+++..+..|..+ ++|++|++++|.+++..+..+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 48999999999997766 7788898 99999999999997777777665 999999999999987666644
Q ss_pred --cCC-CCCCEEeCcCCcCcccCChhHHh---c-CCCCcEEEcccccccccC----CcCccCCC-CCCEEeccCCcCCCC
Q 046668 69 --QNC-TKLVMLDIGENEFVGNVPTWIGI---R-FSSLMILNLRSNKFRGVL----PNQLCGLT-SLHVLDLADNHLSGS 136 (381)
Q Consensus 69 --~~l-~~L~~L~L~~n~l~~~~~~~~~~---~-l~~L~~L~L~~n~l~~~~----~~~~~~l~-~L~~L~L~~n~l~~~ 136 (381)
..+ ++|++|++++|++.+..+..+.. . ..+|++|++++|.+++.. +..+...+ +|++|++++|.+++.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 445 89999999999998544444432 2 369999999999998533 33445555 999999999999877
Q ss_pred cCcccc----cc-cccccccccCCccccCCCCCCCccccceEEEEeccccchhhh-cccccEEEccCCcccccCch----
Q 046668 137 IPKCIS----NI-SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTI-LKLMRLIDLSKNKFSGEIPS---- 206 (381)
Q Consensus 137 ~~~~~~----~l-~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~---- 206 (381)
.+..+. .. ++|+.++++.+....... ......+.. .++|+.|++++|.+++..+.
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~---------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSY---------------AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCH---------------HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHH---------------HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 665554 34 699999998887542100 001122233 35899999999999876553
Q ss_pred hhhccccCcEEeCCCcccccc-------cChhhhccCCCCEEeccCCcCcccCchhh
Q 046668 207 EIMNLRALVSLDLSCNSFTGR-------IPNSIGALESILSIDFSANQLYGEIPQSI 256 (381)
Q Consensus 207 ~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 256 (381)
.+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+....+..+
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 356779999999999995532 23356778899999999999986655443
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=4.4e-23 Score=184.34 Aligned_cols=190 Identities=22% Similarity=0.366 Sum_probs=160.6
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ + ..+.++++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECC
Confidence 48999999999984 44 68899999999999999986544 8999999999999999985 3 379999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|++. .++. +. .+++|++|++++|.+++..+ +..+++|++|++++|.+++. +. +..
T Consensus 116 ~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~----------------- 171 (308)
T 1h6u_A 116 STQIT-DVTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LAN----------------- 171 (308)
T ss_dssp TSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTT-----------------
T ss_pred CCCCC-Cchh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcC-----------------
Confidence 99998 4554 43 89999999999999986543 88999999999999998742 22 322
Q ss_pred CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCE
Q 046668 161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 240 (381)
+++|+.|++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|++
T Consensus 172 --------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~ 221 (308)
T 1h6u_A 172 --------------------------LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFI 221 (308)
T ss_dssp --------------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCE
T ss_pred --------------------------CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCE
Confidence 4568899999999985544 889999999999999998544 3788999999
Q ss_pred EeccCCcCcc
Q 046668 241 IDFSANQLYG 250 (381)
Q Consensus 241 L~L~~n~l~~ 250 (381)
|++++|.+++
T Consensus 222 L~l~~N~i~~ 231 (308)
T 1h6u_A 222 VTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEC
T ss_pred EEccCCeeec
Confidence 9999999984
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=5.5e-22 Score=180.54 Aligned_cols=239 Identities=14% Similarity=0.111 Sum_probs=127.8
Q ss_pred EEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeC-CccccCCCCCCE-EeCcC
Q 046668 4 ILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQI-PASFQNCTKLVM-LDIGE 81 (381)
Q Consensus 4 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~L~~ 81 (381)
+++-++++++ .+|..+ .+++++|+|++|+|+.+.+++|.++++|++|+|++|.+.+.+ +.+|.+++++++ +.++.
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4455566666 445444 246666777777666555556666677777777766654333 345666666554 44455
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccC-CcCCCCcCccccccc-ccccccccCCcccc
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLAD-NHLSGSIPKCISNIS-SMVTANFSIGTDVQ 159 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~l~~~~~~~~~ 159 (381)
|++. .++...+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.++++.+....
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 90 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp TTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred Cccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6665 44433333566677777766666655444555555666666654 344422333444432 34445555444433
Q ss_pred CCCCCCCccccceEEEEeccccchhhhcccccEEEccC-CcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSK-NKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238 (381)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 238 (381)
++.... ...+|+.|++.+ |.++...+..|..+++|++|++++|+++ .+|. ..+.+|
T Consensus 169 i~~~~f--------------------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L 225 (350)
T 4ay9_X 169 IHNSAF--------------------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENL 225 (350)
T ss_dssp ECTTSS--------------------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTC
T ss_pred CChhhc--------------------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccc
Confidence 222111 123456666653 4444333445666666666666666666 3332 123445
Q ss_pred CEEeccCCcCcccCchhhhCCCCCCeeeCCCC
Q 046668 239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNN 270 (381)
Q Consensus 239 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N 270 (381)
++|.+.++.-...+|. +..+++|+.+++.++
T Consensus 226 ~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 226 KKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred hHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 5555444433334443 556666666666543
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.6e-23 Score=189.71 Aligned_cols=230 Identities=17% Similarity=0.209 Sum_probs=183.0
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCccc-CCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGN-IPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI 79 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 79 (381)
+++.|++++|.+.+..+. +.++++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 478999999999977665 55799999999999998865 7788899999999999999998888889999999999999
Q ss_pred cCC-cCccc-CChhHHhcCCCCcEEEcccc-ccccc-CCcCccCCC-CCCEEeccCCc--CC-CCcCccccccccccccc
Q 046668 80 GEN-EFVGN-VPTWIGIRFSSLMILNLRSN-KFRGV-LPNQLCGLT-SLHVLDLADNH--LS-GSIPKCISNISSMVTAN 151 (381)
Q Consensus 80 ~~n-~l~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~l~ 151 (381)
++| .+.+. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|++++|. ++ +.++..
T Consensus 150 ~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~----------- 217 (336)
T 2ast_B 150 SGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL----------- 217 (336)
T ss_dssp TTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-----------
T ss_pred CCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-----------
Confidence 999 57643 454444 7999999999999 88854 466678899 99999999995 33 122222
Q ss_pred ccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCc-ccccCchhhhccccCcEEeCCCcc-cccccC
Q 046668 152 FSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNK-FSGEIPSEIMNLRALVSLDLSCNS-FTGRIP 229 (381)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~ 229 (381)
+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.....
T Consensus 218 --------------------------------~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 218 --------------------------------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp --------------------------------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred --------------------------------HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH
Confidence 2336679999999998 776777789999999999999995 333333
Q ss_pred hhhhccCCCCEEeccCCcCcccCchhhhCC-CCCCeeeCCCCcceecCCCC
Q 046668 230 NSIGALESILSIDFSANQLYGEIPQSISSL-TFLSRLKLSNNNLSGKIPLS 279 (381)
Q Consensus 230 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~ 279 (381)
..++.+++|++|++++| ++.. .+..+ ..++.|++++|++++..|..
T Consensus 266 ~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence 36788999999999999 5432 23333 24777889999999877753
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=6.7e-22 Score=179.98 Aligned_cols=222 Identities=16% Similarity=0.170 Sum_probs=168.7
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCccc-CCccCCCCCCCCE-EEccCCccceeCCccccCCCCCCEEe
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGN-IPISLGMLSSLQS-LNLRKNSLSGQIPASFQNCTKLVMLD 78 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~ 78 (381)
++++|+|++|+|+.+.+++|.++++|++|+|++|.+.+. .+.+|.+++++++ +.+.+|.++...|++|.++++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 478999999999976667899999999999999998654 4568899998876 56677999988899999999999999
Q ss_pred CcCCcCcccCChhHHhcCCCCcEEEccc-ccccccCCcCccCCC-CCCEEeccCCcCCCCcCcccccccccccccccC-C
Q 046668 79 IGENEFVGNVPTWIGIRFSSLMILNLRS-NKFRGVLPNQLCGLT-SLHVLDLADNHLSGSIPKCISNISSMVTANFSI-G 155 (381)
Q Consensus 79 L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~-~ 155 (381)
+++|++. .+|...+....++..|++.+ +.+....+..|..+. .+++|++++|+++ .++.......+++.+++.. +
T Consensus 111 l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 111 ISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCT
T ss_pred ccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCC
Confidence 9999998 55554443667788899865 567766667777775 6899999999998 4555555567788887764 3
Q ss_pred ccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhcc
Q 046668 156 TDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGAL 235 (381)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 235 (381)
....++.. .+..+++|+.|++++|+++..++..+.++++|+.+++ +.++ .+|. +..+
T Consensus 189 ~l~~i~~~-------------------~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP~-l~~l 245 (350)
T 4ay9_X 189 NLEELPND-------------------VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT-LEKL 245 (350)
T ss_dssp TCCCCCTT-------------------TTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCCC-TTTC
T ss_pred cccCCCHH-------------------HhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCCC-chhC
Confidence 33333321 2345788999999999999665555554444444333 3344 6664 7889
Q ss_pred CCCCEEeccCCc
Q 046668 236 ESILSIDFSANQ 247 (381)
Q Consensus 236 ~~L~~L~L~~n~ 247 (381)
++|+.++++++.
T Consensus 246 ~~L~~l~l~~~~ 257 (350)
T 4ay9_X 246 VALMEASLTYPS 257 (350)
T ss_dssp CSCCEEECSCHH
T ss_pred cChhhCcCCCCc
Confidence 999999998764
No 92
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=1.6e-21 Score=189.14 Aligned_cols=229 Identities=23% Similarity=0.318 Sum_probs=156.1
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|++|++++|.++ .+|. .+++|++|+|++|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|+++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 4678888888877 4454 46778888888888773 444 56777777777777764 333 45566666666
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCc-----------------cCCCCCCEEeccCCcCCCCcCccccc
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQL-----------------CGLTSLHVLDLADNHLSGSIPKCISN 143 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~l~~L~~L~L~~n~l~~~~~~~~~~ 143 (381)
+|++. .+|. .+++|++|++++|.+++ +|..+ ..+++|+.|++++|.+++ +|..
T Consensus 130 ~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~--- 199 (622)
T 3g06_A 130 GNQLT-SLPV----LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTL--- 199 (622)
T ss_dssp SSCCS-CCCC----CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCC---
T ss_pred CCCCC-cCCC----CCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCc---
Confidence 66665 3443 23556666666665553 22111 223788899999998874 4543
Q ss_pred ccccccccccCCccccCCCCCCCccccceEEEEeccccchh-hhcccccEEEccCCcccccCchhhhccccCcEEeCCCc
Q 046668 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN-TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCN 222 (381)
Q Consensus 144 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n 222 (381)
+++|+.++++.+....++... .......+.++.+..+ ..+++|+.|++++|+++. +|. .+++|+.|+|++|
T Consensus 200 ~~~L~~L~L~~N~l~~l~~~~----~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 200 PSELYKLWAYNNRLTSLPALP----SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp CTTCCEEECCSSCCSSCCCCC----TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred cchhhEEECcCCcccccCCCC----CCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCC
Confidence 367777777777766655432 1222233333322221 346889999999999984 444 6789999999999
Q ss_pred ccccccChhhhccCCCCEEeccCCcCcccCchhhhCCC
Q 046668 223 SFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLT 260 (381)
Q Consensus 223 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 260 (381)
.++ .+|..+..+++|+.|++++|.+++..|..+..++
T Consensus 272 ~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999 7899999999999999999999988888776554
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.2e-21 Score=165.01 Aligned_cols=161 Identities=23% Similarity=0.255 Sum_probs=80.7
Q ss_pred CCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEec
Q 046668 49 SLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDL 128 (381)
Q Consensus 49 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (381)
+|++|++++|.+++..+..|.++++|++|++++|++. .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4444444444444433344444445555555544444 333332224445555555555544333344455555555555
Q ss_pred cCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhh
Q 046668 129 ADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEI 208 (381)
Q Consensus 129 ~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 208 (381)
++|.+++..+..+.. +++|+.|++++|++++..+..+
T Consensus 108 ~~N~l~~~~~~~~~~-------------------------------------------l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDK-------------------------------------------LTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp CSSCCCCCCTTTTTT-------------------------------------------CTTCCEEECCSSCCSCCCTTTT
T ss_pred CCCcCcccCHhHhcc-------------------------------------------CCcCCEEECCCCccceeCHHHh
Confidence 555554322222222 2234555555555554444445
Q ss_pred hccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCC
Q 046668 209 MNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLT 260 (381)
Q Consensus 209 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 260 (381)
..+++|++|++++|.+.+ .++.|+.|++..|.+++.+|..++.++
T Consensus 145 ~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 666666666666665542 234566666666777666666655544
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.1e-21 Score=165.14 Aligned_cols=181 Identities=21% Similarity=0.231 Sum_probs=147.7
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 82 (381)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46778888877 455544 468999999999999877778999999999999999999777778899999999999999
Q ss_pred cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCC
Q 046668 83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPS 162 (381)
Q Consensus 83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 162 (381)
++. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------------------- 146 (208)
T 2o6s_A 87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR------------------- 146 (208)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-------------------
T ss_pred cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc-------------------
Confidence 998 566555448999999999999999777777899999999999999998554444544
Q ss_pred CCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCC
Q 046668 163 VSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES 237 (381)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 237 (381)
+++|+.|++++|.+.+ .++.|+.|+++.|.+++.+|.+++.++.
T Consensus 147 ------------------------l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 147 ------------------------LTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------------------------CTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------------------------CCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3447777888887653 3557888888888888888887776654
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=3.2e-21 Score=184.80 Aligned_cols=95 Identities=24% Similarity=0.380 Sum_probs=62.9
Q ss_pred CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEc
Q 046668 25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL 104 (381)
Q Consensus 25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 104 (381)
+|+.|+|++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|++.+ +|. +. . +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEEC
Confidence 67777777777764 454442 66777777777776 455 346677777777777763 665 33 2 7777777
Q ss_pred ccccccccCCcCccCCCCCCEEeccCCcCCC
Q 046668 105 RSNKFRGVLPNQLCGLTSLHVLDLADNHLSG 135 (381)
Q Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 135 (381)
++|.+++ +|. .+++|++|++++|.+++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM 154 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence 7777775 444 46677777777777763
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=3.7e-22 Score=169.35 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=111.1
Q ss_pred EEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcCcccccccccccccccC
Q 046668 76 MLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSI 154 (381)
Q Consensus 76 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~ 154 (381)
.+++++|.+. .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..
T Consensus 15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 4555555554 4454332 334556666666554433 33556666666666666665433333333
Q ss_pred CccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhc
Q 046668 155 GTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGA 234 (381)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 234 (381)
+++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..+..
T Consensus 80 --------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 127 (220)
T 2v70_A 80 --------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG 127 (220)
T ss_dssp --------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTT
T ss_pred --------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCC
Confidence 333666666667676666777888899999999999999777888899
Q ss_pred cCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668 235 LESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS 279 (381)
Q Consensus 235 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 279 (381)
+++|++|++++|.+++..|..+..+++|+.|++++|++.|.|+..
T Consensus 128 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 999999999999999888888999999999999999999988754
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=4e-21 Score=175.55 Aligned_cols=107 Identities=25% Similarity=0.236 Sum_probs=70.5
Q ss_pred CCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCcccc-CCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEc
Q 046668 26 LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQ-NCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL 104 (381)
Q Consensus 26 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 104 (381)
-++++++++.++ .+|..+. ..+++|+|++|.+++..+..|. ++++|++|+|++|++. .++...+..+++|++|+|
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 357777777777 4555544 4577777777777766666666 7777777777777776 344333336677777777
Q ss_pred ccccccccCCcCccCCCCCCEEeccCCcCCCC
Q 046668 105 RSNKFRGVLPNQLCGLTSLHVLDLADNHLSGS 136 (381)
Q Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 136 (381)
++|.++...+..|..+++|++|++++|.+...
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEE
Confidence 77777655555666666677776666666533
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=5.7e-21 Score=162.04 Aligned_cols=157 Identities=19% Similarity=0.255 Sum_probs=118.2
Q ss_pred CEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccC
Q 046668 75 VMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSI 154 (381)
Q Consensus 75 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~ 154 (381)
+.++.+++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..|..|.+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~----------- 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG----------- 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-----------
Confidence 45566666665 5555432 46677777777776665566777777777777777776554555544
Q ss_pred CccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhc
Q 046668 155 GTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGA 234 (381)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 234 (381)
+++|+.|++++|+++...+..|..+++|++|+|++|.+++..|..|..
T Consensus 79 --------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 126 (220)
T 2v9t_B 79 --------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126 (220)
T ss_dssp --------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred --------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCC
Confidence 334666777777777566666788899999999999999877888999
Q ss_pred cCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCC
Q 046668 235 LESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL 278 (381)
Q Consensus 235 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 278 (381)
+++|++|+|++|.+++..+..+..+++|+.|++++|++.|.|+.
T Consensus 127 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 99999999999999977777888999999999999999998874
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=3.2e-21 Score=184.79 Aligned_cols=188 Identities=27% Similarity=0.397 Sum_probs=135.1
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|+.|++++|++++ +|..+ +++|++|+|++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 46788888888875 56554 367888888888887 455 346788888888888875 555 554 88888888
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|++.+ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +.
T Consensus 129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------ 179 (571)
T 3cvr_A 129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------ 179 (571)
T ss_dssp SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------------------
T ss_pred CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------------------
Confidence 888874 666 46788888888888885 454 46788888888888774 443 32
Q ss_pred CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccC-------cEEeCCCcccccccChhhh
Q 046668 161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRAL-------VSLDLSCNSFTGRIPNSIG 233 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~~~ 233 (381)
++|+.|++++|+++ .+|. +.. +| +.|+|++|.++ .+|..+.
T Consensus 180 ---------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~ 227 (571)
T 3cvr_A 180 ---------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL 227 (571)
T ss_dssp ---------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG
T ss_pred ---------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh
Confidence 23777788888777 4444 443 56 88888888887 6777777
Q ss_pred ccCCCCEEeccCCcCcccCchhhhCCC
Q 046668 234 ALESILSIDFSANQLYGEIPQSISSLT 260 (381)
Q Consensus 234 ~l~~L~~L~L~~n~l~~~~~~~l~~l~ 260 (381)
.+++|++|++++|.+++.+|..+..++
T Consensus 228 ~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 228 SLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp GSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred cCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 788888888888888877777665543
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=1.5e-20 Score=171.83 Aligned_cols=179 Identities=24% Similarity=0.254 Sum_probs=148.6
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCC-CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLG-MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
+.+++++++++ .+|..+. +.++.|+|++|.+++..+..|. ++++|++|+|++|.+++..+.+|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57899999998 5676553 4699999999999988888887 999999999999999988889999999999999999
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP 161 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 161 (381)
|++. .++...+..+++|++|+|++|.+....+..|..+++|++|++++|.++...+..+..+
T Consensus 98 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~----------------- 159 (361)
T 2xot_A 98 NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG----------------- 159 (361)
T ss_dssp SCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-------------------
T ss_pred CcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc-----------------
Confidence 9998 5665555589999999999999998889999999999999999999984332323211
Q ss_pred CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhcccc--CcEEeCCCcccc
Q 046668 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRA--LVSLDLSCNSFT 225 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~Ls~n~l~ 225 (381)
..+++|+.|++++|+++...+..+..++. ++.|+|++|.+.
T Consensus 160 -----------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 160 -----------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -----------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 12556888999999988766677888776 478888888776
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=8.7e-21 Score=167.96 Aligned_cols=171 Identities=20% Similarity=0.304 Sum_probs=91.4
Q ss_pred CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCE
Q 046668 46 MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHV 125 (381)
Q Consensus 46 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 125 (381)
.+++|++|++++|.+... + .+..+++|++|++++|++. .++. +. .+++|++|++++|.+++. ..+..+++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 345555555555555422 2 2455555555555555554 2322 22 455555555555555532 22555566666
Q ss_pred EeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCc
Q 046668 126 LDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP 205 (381)
Q Consensus 126 L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 205 (381)
|++++|.+.+. ..+.. +++|+.|++++|++++.
T Consensus 117 L~L~~n~i~~~--~~l~~-------------------------------------------l~~L~~L~l~~n~l~~~-- 149 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVH-------------------------------------------LPQLESLYLGNNKITDI-- 149 (291)
T ss_dssp EECTTSCCCCC--GGGGG-------------------------------------------CTTCCEEECCSSCCCCC--
T ss_pred EECCCCcCCCC--hhhcC-------------------------------------------CCCCCEEEccCCcCCcc--
Confidence 66666655421 11111 33455555666655533
Q ss_pred hhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668 206 SEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274 (381)
Q Consensus 206 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 274 (381)
..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 345666666666666666664333 5666666666666666663 33 25666666666666666653
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=3.9e-20 Score=157.91 Aligned_cols=157 Identities=22% Similarity=0.262 Sum_probs=120.5
Q ss_pred CCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccccccccccccc
Q 046668 74 LVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFS 153 (381)
Q Consensus 74 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~ 153 (381)
.+.++.+++++. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++....+..|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~---------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence 445666666665 566544 266777777777777666677777777777777777775333333333
Q ss_pred CCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhh
Q 046668 154 IGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIG 233 (381)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 233 (381)
+++|+.|++++|++++..+..|..+++|++|++++|.++ .+|..+.
T Consensus 87 ---------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 132 (229)
T 3e6j_A 87 ---------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE 132 (229)
T ss_dssp ---------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG
T ss_pred ---------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc
Confidence 344777777788877666777888999999999999998 7888889
Q ss_pred ccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCC
Q 046668 234 ALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL 278 (381)
Q Consensus 234 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 278 (381)
.+++|++|++++|.+++..+..+..+++|+.|++++|++.|.|+.
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 999999999999999977777788999999999999999998874
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=5.4e-20 Score=156.00 Aligned_cols=151 Identities=22% Similarity=0.261 Sum_probs=136.5
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 82 (381)
+.++++++.++ .+|..+. ++|+.|++++|.++++.+..|..+++|++|+|++|.+++..|.+|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46889999988 5676553 78999999999999888889999999999999999999888999999999999999999
Q ss_pred cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcc
Q 046668 83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTD 157 (381)
Q Consensus 83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~ 157 (381)
++. .+|...+..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.++++.+..
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 998 78877766899999999999999988889999999999999999999977778899999999999887764
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=1.6e-20 Score=181.74 Aligned_cols=172 Identities=21% Similarity=0.317 Sum_probs=88.0
Q ss_pred cCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCc
Q 046668 21 MNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLM 100 (381)
Q Consensus 21 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 100 (381)
..+++|+.|++++|.+.. ++ .|..+++|++|+|++|.+.+..+ +.++++|+.|+|++|.+. .+| .+. .+++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~-~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLK-DLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TST-TCTTCC
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhc-cCCCCC
Confidence 345555555665555552 22 35555555666665555553332 555555555555555554 233 222 455555
Q ss_pred EEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccc
Q 046668 101 ILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180 (381)
Q Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (381)
+|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~-------------------------------------- 150 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS-------------------------------------- 150 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG--------------------------------------
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc--------------------------------------
Confidence 555555555532 2345555555555555555421 1111
Q ss_pred cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcc
Q 046668 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYG 250 (381)
Q Consensus 181 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 250 (381)
.+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|.+++
T Consensus 151 -----~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 151 -----RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -----SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred -----ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 13345555555555554433 5555556666666655553 22 35555555666665555543
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=7.6e-20 Score=161.92 Aligned_cols=185 Identities=20% Similarity=0.294 Sum_probs=148.8
Q ss_pred cCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcc
Q 046668 7 LGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG 86 (381)
Q Consensus 7 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 86 (381)
+..+.+++. ..+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.
T Consensus 31 l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~- 103 (291)
T 1h6t_A 31 LKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK- 103 (291)
T ss_dssp TTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred hcCCCcccc--cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-
Confidence 444444433 2245789999999999999854 3 47889999999999999986544 899999999999999997
Q ss_pred cCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCC
Q 046668 87 NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTG 166 (381)
Q Consensus 87 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 166 (381)
.++. +. .+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+.
T Consensus 104 ~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~------------------------ 153 (291)
T 1h6t_A 104 DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS------------------------ 153 (291)
T ss_dssp CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGG------------------------
T ss_pred CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhc------------------------
Confidence 4554 44 789999999999999854 5688899999999999998743 2222
Q ss_pred ccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCC
Q 046668 167 KYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSAN 246 (381)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 246 (381)
.+++|+.|++++|++++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|
T Consensus 154 -------------------~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 154 -------------------RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp -------------------GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEE
T ss_pred -------------------cCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCC
Confidence 25668999999999986555 8899999999999999984 44 4888999999999999
Q ss_pred cCccc
Q 046668 247 QLYGE 251 (381)
Q Consensus 247 ~l~~~ 251 (381)
.++..
T Consensus 211 ~i~~~ 215 (291)
T 1h6t_A 211 ECLNK 215 (291)
T ss_dssp EEECC
T ss_pred cccCC
Confidence 98753
No 106
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=4.2e-22 Score=194.23 Aligned_cols=295 Identities=14% Similarity=0.082 Sum_probs=159.1
Q ss_pred CccEEEcCCCccccc----CCccccCCCCCCEEECcCCcCc----ccCCccCCCCCCCCEEEccCCccceeCCccccCCC
Q 046668 1 GIRILKLGENHFSGE----IPDCWMNWLDLLVLNLGNNNFT----GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCT 72 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 72 (381)
+|++|+|++|.+++. ++..+.++++|++|++++|.++ +.++..+.++++|++|++++|.+.+ ++..+.+++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~ 243 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA 243 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh
Confidence 356666666665543 2223445666666666666654 2223334456667777777666553 344445555
Q ss_pred CCCEEeCcC---------------------------CcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCC
Q 046668 73 KLVMLDIGE---------------------------NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLH 124 (381)
Q Consensus 73 ~L~~L~L~~---------------------------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 124 (381)
+|++|+++. +.. +.+|..+. .+++|++|++++|.+++... ..+..+++|+
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 555555442 111 12343333 57788899998888654332 3356788888
Q ss_pred EEeccCCcCCCCcCcccccccccccccccC----------CccccCCCCCC--CccccceEEEE-----eccccchhhh-
Q 046668 125 VLDLADNHLSGSIPKCISNISSMVTANFSI----------GTDVQYPSVST--GKYVEDALLVL-----KGKAVEYNTI- 186 (381)
Q Consensus 125 ~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~----------~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~- 186 (381)
+|+++++.....++.....+++|+.++++. +.......... ..........+ .+..+..+..
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 888883322223333445677788877773 21111000000 00011111111 1222222332
Q ss_pred cccccEEEcc----CCccccc-----CchhhhccccCcEEeCCCcc--cccccChhhh-ccCCCCEEeccCCcCcc-cCc
Q 046668 187 LKLMRLIDLS----KNKFSGE-----IPSEIMNLRALVSLDLSCNS--FTGRIPNSIG-ALESILSIDFSANQLYG-EIP 253 (381)
Q Consensus 187 ~~~L~~L~L~----~n~~~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~~ 253 (381)
+++|+.|+++ .|.+++. ++..+.++++|++|+++.|. +++..+..+. .+++|++|++++|.+++ .++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 6778888885 4556543 22335667778888776433 5544444443 36778888888887764 234
Q ss_pred hhhhCCCCCCeeeCCCCcceec-CCC-CCCCCccCCCcccCCCCCCC
Q 046668 254 QSISSLTFLSRLKLSNNNLSGK-IPL-STQLQSFDPSSFTGNRLCGS 298 (381)
Q Consensus 254 ~~l~~l~~L~~L~l~~N~l~~~-~~~-~~~l~~l~~~~~~~n~l~~~ 298 (381)
..+..+++|++|++++|+++.. ++. ...++.|+.+++++|.+++.
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 4556777788888888876532 111 12356677777777765543
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=151.35 Aligned_cols=151 Identities=23% Similarity=0.288 Sum_probs=132.8
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCC-ccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIP-ISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
+.+++++|.++ .+|..+. ..+++|+|++|.+++..+ ..|..+++|++|++++|.+++..+.+|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57899999998 4676553 467899999999997755 5688999999999999999988888999999999999999
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcc
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTD 157 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~ 157 (381)
|++. .++...+..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.++++.+..
T Consensus 91 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 91 NRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 9998 55555455899999999999999988899999999999999999999988899999999999999887764
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=2.8e-19 Score=152.55 Aligned_cols=150 Identities=25% Similarity=0.275 Sum_probs=101.2
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 82 (381)
+.++.++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+....+..|.++++|++|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 35666666666 4554432 67777777777777666777777777777777777776555566677777777777777
Q ss_pred cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcc
Q 046668 83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTD 157 (381)
Q Consensus 83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~ 157 (381)
++. .++...+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.+++..+..
T Consensus 99 ~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 99 QLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 776 455444446777777777777777 5566667777777777777777755555667777777777666553
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=2.4e-19 Score=173.56 Aligned_cols=169 Identities=25% Similarity=0.330 Sum_probs=138.2
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
+|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|++|+|++|.+.+ ++ .+..+++|++|+|+
T Consensus 44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence 47889999999984 34 58899999999999999996555 8899999999999999984 34 79999999999999
Q ss_pred CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668 81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY 160 (381)
Q Consensus 81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 160 (381)
+|.+. .++ .+. .+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..
T Consensus 118 ~N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~----------------- 173 (605)
T 1m9s_A 118 HNGIS-DIN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG----------------- 173 (605)
T ss_dssp TSCCC-CCG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT-----------------
T ss_pred CCCCC-CCc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc-----------------
Confidence 99998 454 344 799999999999999965 678999999999999999986544 444
Q ss_pred CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccc
Q 046668 161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGR 227 (381)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 227 (381)
+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 174 --------------------------l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 174 --------------------------LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --------------------------CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred --------------------------CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 44477777777777643 3477777888888888777643
No 110
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=1.1e-20 Score=184.08 Aligned_cols=273 Identities=12% Similarity=0.018 Sum_probs=165.9
Q ss_pred CccEEEcCCCcccc----cCCccccCCCCCCEEECcCCcCcccCCccC---------------------------CCCCC
Q 046668 1 GIRILKLGENHFSG----EIPDCWMNWLDLLVLNLGNNNFTGNIPISL---------------------------GMLSS 49 (381)
Q Consensus 1 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------------------------~~l~~ 49 (381)
+|++|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+ ..+++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 47788888887762 334445667888888888877653 23333 34444
Q ss_pred CCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEecc
Q 046668 50 LQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLA 129 (381)
Q Consensus 50 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 129 (381)
|+.|+++++.. ..+|..+..+++|++|++++|.+.+.....+...+++|++|+++++-....++..+..+++|++|+++
T Consensus 272 L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 272 LCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 44444444322 24566677788889999988886543333334467888888887432222333334556778888877
Q ss_pred C-----------CcCCCC-cCcccccccccccccccCCccccCCCCCCC-ccccceEEEEe----cc----------ccc
Q 046668 130 D-----------NHLSGS-IPKCISNISSMVTANFSIGTDVQYPSVSTG-KYVEDALLVLK----GK----------AVE 182 (381)
Q Consensus 130 ~-----------n~l~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~----------~~~ 182 (381)
+ +.+++. ++.....+++|+.+++..+........... .........+. .+ ...
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 3 344322 112234466677766633322110000000 00011111221 11 112
Q ss_pred hhhhcccccEEEccCCc--ccccCchhhh-ccccCcEEeCCCccccc-ccChhhhccCCCCEEeccCCcCccc-Cchhhh
Q 046668 183 YNTILKLMRLIDLSKNK--FSGEIPSEIM-NLRALVSLDLSCNSFTG-RIPNSIGALESILSIDFSANQLYGE-IPQSIS 257 (381)
Q Consensus 183 ~~~~~~~L~~L~L~~n~--~~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~ 257 (381)
....+++|+.|++++|. +++..+..+. .+++|++|++++|.+++ .++..+..+++|++|++++|.+++. ++....
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 24568999999998643 5555444444 48999999999999986 3455567889999999999998754 445557
Q ss_pred CCCCCCeeeCCCCcceec
Q 046668 258 SLTFLSRLKLSNNNLSGK 275 (381)
Q Consensus 258 ~l~~L~~L~l~~N~l~~~ 275 (381)
.+++|++|++++|+++..
T Consensus 511 ~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HCSSCCEEEEESCBCCTT
T ss_pred hcCccCeeECcCCcCCHH
Confidence 899999999999998753
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=8.1e-19 Score=146.17 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=47.6
Q ss_pred ccEEEccCCcccccCchhhhccccCcEEeCCCcc-cccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCC
Q 046668 190 MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNS-FTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLS 268 (381)
Q Consensus 190 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 268 (381)
|+.|++++|.+++..+..+..+++|++|++++|. +. .+| .+..+++|++|++++|.+++ ++ .+..+++|+.|+++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEEC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEee
Confidence 4445555555554455556666666677776666 44 444 46666777777777777664 33 45666777777777
Q ss_pred CCcce
Q 046668 269 NNNLS 273 (381)
Q Consensus 269 ~N~l~ 273 (381)
+|++.
T Consensus 190 ~N~i~ 194 (197)
T 4ezg_A 190 SQTIG 194 (197)
T ss_dssp BC---
T ss_pred CcccC
Confidence 77654
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=1.4e-19 Score=157.71 Aligned_cols=170 Identities=21% Similarity=0.312 Sum_probs=105.5
Q ss_pred CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcE
Q 046668 22 NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI 101 (381)
Q Consensus 22 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 101 (381)
.+.+++.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|++. .++. +. .+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~-~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP-LK-DLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh-hc-cCCCCCE
Confidence 4555666777777776433 4566777778888777776 344 5777778888888888776 4444 33 6777888
Q ss_pred EEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEecccc
Q 046668 102 LNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV 181 (381)
Q Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (381)
|++++|.+++. +. +.. ++|++|++++|++++. + .+..
T Consensus 90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~-------------------------------------- 126 (263)
T 1xeu_A 90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIH-------------------------------------- 126 (263)
T ss_dssp EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTT--------------------------------------
T ss_pred EECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcC--------------------------------------
Confidence 88888877743 32 222 6777777777776631 1 1211
Q ss_pred chhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcc
Q 046668 182 EYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYG 250 (381)
Q Consensus 182 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 250 (381)
+++|+.|++++|++++. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|.++.
T Consensus 127 -----l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 127 -----LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -----CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred -----cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 33456666666666543 2 455666666666666666633 445556666666666666553
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=9.8e-19 Score=145.66 Aligned_cols=154 Identities=22% Similarity=0.266 Sum_probs=115.3
Q ss_pred CCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCC
Q 046668 45 GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH 124 (381)
Q Consensus 45 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (381)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+. .++ .+. .+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 45678888888888887 455 5788888888888888664 333 444 688888888888888877777888888888
Q ss_pred EEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCc-cccc
Q 046668 125 VLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNK-FSGE 203 (381)
Q Consensus 125 ~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~ 203 (381)
+|++++|.+++..+..+.. +++|+.|++++|. +. .
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~-------------------------------------------l~~L~~L~L~~n~~i~-~ 151 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINT-------------------------------------------LPKVNSIDLSYNGAIT-D 151 (197)
T ss_dssp EEECCSSBCBGGGHHHHTT-------------------------------------------CSSCCEEECCSCTBCC-C
T ss_pred EEEecCCccCcHhHHHHhh-------------------------------------------CCCCCEEEccCCCCcc-c
Confidence 9988888887655555544 4457778888887 54 4
Q ss_pred CchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcc
Q 046668 204 IPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYG 250 (381)
Q Consensus 204 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 250 (381)
+| .+..+++|++|++++|.+++ ++ .+..+++|++|++++|++.+
T Consensus 152 ~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 152 IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 44 58888999999999999884 44 67888999999999998763
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=3e-19 Score=155.66 Aligned_cols=171 Identities=19% Similarity=0.281 Sum_probs=143.1
Q ss_pred CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCE
Q 046668 46 MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHV 125 (381)
Q Consensus 46 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 125 (381)
.+.+++.++++++.+++.. .+..+++|++|++++|++. .++ .+. .+++|++|++++|.+++..+ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 4667888899999988543 6889999999999999997 677 444 78999999999999996544 899999999
Q ss_pred EeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCc
Q 046668 126 LDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP 205 (381)
Q Consensus 126 L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 205 (381)
|++++|++++ +|... .++|+.|++++|++++.
T Consensus 90 L~L~~N~l~~-l~~~~---------------------------------------------~~~L~~L~L~~N~l~~~-- 121 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGIP---------------------------------------------SACLSRLFLDNNELRDT-- 121 (263)
T ss_dssp EECCSSCCSC-CTTCC---------------------------------------------CSSCCEEECCSSCCSBS--
T ss_pred EECCCCccCC-cCccc---------------------------------------------cCcccEEEccCCccCCC--
Confidence 9999999874 22210 03489999999999864
Q ss_pred hhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceec
Q 046668 206 SEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGK 275 (381)
Q Consensus 206 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 275 (381)
..+..+++|++|++++|++++ ++ .+..+++|++|++++|.+++. ..+..+++|+.|++++|++.+.
T Consensus 122 ~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 122 DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 358999999999999999995 44 688999999999999999965 6688999999999999999865
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=4.1e-19 Score=147.25 Aligned_cols=92 Identities=20% Similarity=0.292 Sum_probs=69.9
Q ss_pred ccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeC
Q 046668 188 KLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKL 267 (381)
Q Consensus 188 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 267 (381)
++|+.|++++|++++..|..|..+++|++|+|++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 34566666666666666677777788888888888887766777777888888888888888777777888888888888
Q ss_pred CCCcceecCCCC
Q 046668 268 SNNNLSGKIPLS 279 (381)
Q Consensus 268 ~~N~l~~~~~~~ 279 (381)
++|++.|.|+..
T Consensus 134 ~~N~l~c~c~l~ 145 (192)
T 1w8a_A 134 ASNPFNCNCHLA 145 (192)
T ss_dssp TTCCBCCSGGGH
T ss_pred CCCCccCcCcch
Confidence 888888877653
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=2.4e-21 Score=186.38 Aligned_cols=178 Identities=21% Similarity=0.274 Sum_probs=112.9
Q ss_pred CCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCc-------------CcccCChhHHhcCCCCcEEE-cccc---
Q 046668 45 GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE-------------FVGNVPTWIGIRFSSLMILN-LRSN--- 107 (381)
Q Consensus 45 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~~l~~L~~L~-L~~n--- 107 (381)
..+++|+.|+|++|.++ .+|..+.++++|+.|++++|. ..+..|..+. .+++|+.|+ ++.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~-~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ-YFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH-HHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH-HHHhcccCcchhhcccc
Confidence 34556666666666665 456666666666666665543 2333333333 455566655 3333
Q ss_pred ----------cccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEe
Q 046668 108 ----------KFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLK 177 (381)
Q Consensus 108 ----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (381)
.+....+ ..|+.|++++|.+++ +|. ++.
T Consensus 424 ~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~---------------------------------- 461 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQ---------------------------------- 461 (567)
T ss_dssp HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGG----------------------------------
T ss_pred hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccc----------------------------------
Confidence 3332111 247788888888773 443 433
Q ss_pred ccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccC-chhh
Q 046668 178 GKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEI-PQSI 256 (381)
Q Consensus 178 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l 256 (381)
+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|++|+|++|.+++.. |..+
T Consensus 462 ---------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 462 ---------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp ---------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred ---------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 444777777777777 666777777888888888887774 55 6777778888888888777665 7777
Q ss_pred hCCCCCCeeeCCCCcceecCCC
Q 046668 257 SSLTFLSRLKLSNNNLSGKIPL 278 (381)
Q Consensus 257 ~~l~~L~~L~l~~N~l~~~~~~ 278 (381)
..+++|+.|++++|++++..|.
T Consensus 530 ~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 530 VSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GGCTTCCEEECTTSGGGGSSSC
T ss_pred hcCCCCCEEEecCCcCCCCccH
Confidence 7777888888888877766553
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=2.1e-18 Score=139.88 Aligned_cols=129 Identities=21% Similarity=0.245 Sum_probs=64.1
Q ss_pred ccEEEcCCCccc-ccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 2 IRILKLGENHFS-GEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 2 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..|..+++|++|++++|.+.+.+|..+.++++|++|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 455555555554 44444455555555555555555433 445555555555555555554444444455555555555
Q ss_pred CCcCcccCC--hhHHhcCCCCcEEEcccccccccCC---cCccCCCCCCEEeccCCcCC
Q 046668 81 ENEFVGNVP--TWIGIRFSSLMILNLRSNKFRGVLP---NQLCGLTSLHVLDLADNHLS 134 (381)
Q Consensus 81 ~n~l~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~ 134 (381)
+|.+. .+| ..+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 104 ~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 104 GNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55554 222 2222 45555555555555553322 24455555555555555443
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=3.8e-19 Score=176.28 Aligned_cols=180 Identities=19% Similarity=0.194 Sum_probs=77.4
Q ss_pred CCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccC
Q 046668 40 IPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119 (381)
Q Consensus 40 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 119 (381)
.++.|..++.|++|+|++|.+. .+|..+.++++|++|+|++|.+. .+|..+. .+++|++|+|++|.++ .+|..+..
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcC
Confidence 3445555555555666555555 44444445555555555555555 5555444 5555555555555555 44555555
Q ss_pred CCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCc
Q 046668 120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNK 199 (381)
Q Consensus 120 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 199 (381)
+++|++|+|++|.++ .+|..|+. +++|+.|+|++|.
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~-------------------------------------------l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGN-------------------------------------------LCNLQFLGVEGNP 327 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTS-------------------------------------------CTTCCCEECTTSC
T ss_pred CCCCCEEECCCCCCC-ccChhhhc-------------------------------------------CCCccEEeCCCCc
Confidence 555555555555554 44444433 3446666666666
Q ss_pred ccccCchhhhcccc-CcEEeCCCcccccccChhhhccCCCCEEeccCC--------cCcccCchhhhCCCCCCeeeCCCC
Q 046668 200 FSGEIPSEIMNLRA-LVSLDLSCNSFTGRIPNSIGALESILSIDFSAN--------QLYGEIPQSISSLTFLSRLKLSNN 270 (381)
Q Consensus 200 ~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~l~~l~~L~~L~l~~N 270 (381)
+++.+|..+..+.. +..++|++|.+++.+|. .|+.|++++| .+.+..+..+..+..+....+++|
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~N 401 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYN 401 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecc
Confidence 66666665544322 12356666666655553 3445555555 222222233334444555555666
Q ss_pred cce
Q 046668 271 NLS 273 (381)
Q Consensus 271 ~l~ 273 (381)
.+.
T Consensus 402 il~ 404 (727)
T 4b8c_D 402 TLC 404 (727)
T ss_dssp CCC
T ss_pred ccc
Confidence 553
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=2.5e-19 Score=177.60 Aligned_cols=137 Identities=24% Similarity=0.295 Sum_probs=108.4
Q ss_pred cEEEcCCCcccc---------cCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCC
Q 046668 3 RILKLGENHFSG---------EIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTK 73 (381)
Q Consensus 3 ~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 73 (381)
+.++|+.+.|.+ ..++.|..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|.++++
T Consensus 194 ~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 271 (727)
T 4b8c_D 194 QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSN 271 (727)
T ss_dssp ----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTT
T ss_pred hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCC
Confidence 445555555443 44777899999999999999998 66767778999999999999999 88999999999
Q ss_pred CCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccc
Q 046668 74 LVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI 144 (381)
Q Consensus 74 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 144 (381)
|++|+|++|.+. .+|..++ .+++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+..+
T Consensus 272 L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 272 LRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp CCEEECTTSCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CCEEeCcCCcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 999999999998 8898887 8999999999999998 778889999999999999999998888776543
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=9.8e-18 Score=138.91 Aligned_cols=132 Identities=26% Similarity=0.323 Sum_probs=114.8
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCc-cCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPI-SLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
+.+++++++++ .+|..+.. +|++|++++|.+++..+. .|..+++|++|++++|.+++..|.+|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67999999997 67766543 899999999999877664 488999999999999999988899999999999999999
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcC
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 138 (381)
|++.+..+..+. .+++|++|+|++|.+++..|..+..+++|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999855554444 79999999999999999889999999999999999999885543
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=8e-20 Score=175.85 Aligned_cols=197 Identities=18% Similarity=0.200 Sum_probs=118.2
Q ss_pred cCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-------------cceeCCccccCCCCCCEEe-CcCCcCcc
Q 046668 21 MNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-------------LSGQIPASFQNCTKLVMLD-IGENEFVG 86 (381)
Q Consensus 21 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~ 86 (381)
..+++|+.|+|++|.++ .+|..++++++|++|++++|. ..+..|..+.++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34566777777777766 556666667777777765553 3345556666666666666 4554432
Q ss_pred cCChh------HH-hcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668 87 NVPTW------IG-IRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ 159 (381)
Q Consensus 87 ~~~~~------~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~ 159 (381)
.++.. +. .....|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..++.
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------- 484 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA---------------- 484 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG----------------
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc----------------
Confidence 12110 00 012356677777777764 444 666777777777777766 55555444
Q ss_pred CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCccccccc-ChhhhccCCC
Q 046668 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRI-PNSIGALESI 238 (381)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 238 (381)
+++|+.|++++|.+++ +| .++.+++|++|+|++|.+++.. |..++.+++|
T Consensus 485 ---------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 485 ---------------------------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp ---------------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred ---------------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence 3336666667776664 44 5667777777777777776554 6667777777
Q ss_pred CEEeccCCcCcccCch---hhhCCCCCCeeeC
Q 046668 239 LSIDFSANQLYGEIPQ---SISSLTFLSRLKL 267 (381)
Q Consensus 239 ~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l 267 (381)
+.|++++|.+++..|. .+..+++|+.|++
T Consensus 536 ~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7777777777654332 2234666666653
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.74 E-value=4.7e-18 Score=134.88 Aligned_cols=126 Identities=21% Similarity=0.245 Sum_probs=69.4
Q ss_pred CCCCEEECcCCcCc-ccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEE
Q 046668 24 LDLLVLNLGNNNFT-GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL 102 (381)
Q Consensus 24 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 102 (381)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+.+.+|..+. .+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCCEE
Confidence 45566666666655 44555555566666666666655533 4555566666666666665533444332 45666666
Q ss_pred Eccccccccc-CCcCccCCCCCCEEeccCCcCCCCcC---cccccccccccccc
Q 046668 103 NLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIP---KCISNISSMVTANF 152 (381)
Q Consensus 103 ~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~l~~ 152 (381)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 6666665542 22455556666666666666654333 34555555555544
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=2.2e-19 Score=175.09 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=118.5
Q ss_pred cCCCCcEEEcccccccccC-CcCccCCCCCCEEeccCCcCCCC-cCcccccccccccccccCCc------cccCCCCCC-
Q 046668 95 RFSSLMILNLRSNKFRGVL-PNQLCGLTSLHVLDLADNHLSGS-IPKCISNISSMVTANFSIGT------DVQYPSVST- 165 (381)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~l~~~~~~------~~~~~~~~~- 165 (381)
.+++|++|++++|.+++.. ...+..+++|++|++++| +... ++.....+++|+.+++..+. ...+.....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 5789999999999876432 233567899999999988 4322 22223357888888773321 000000000
Q ss_pred ---CccccceEEEEecc-----ccchh-hhcccccEEEcc--C----CcccccC-----chhhhccccCcEEeCCCcccc
Q 046668 166 ---GKYVEDALLVLKGK-----AVEYN-TILKLMRLIDLS--K----NKFSGEI-----PSEIMNLRALVSLDLSCNSFT 225 (381)
Q Consensus 166 ---~~~~~~~~~~~~~~-----~~~~~-~~~~~L~~L~L~--~----n~~~~~~-----~~~~~~l~~L~~L~Ls~n~l~ 225 (381)
..........+... ....+ ..+++|+.|+++ + +.+++.. +..+..+++|++|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 00011111111111 12222 247889999998 3 4454221 22356788899999977 566
Q ss_pred cccChhhhc-cCCCCEEeccCCcCcccCchhh-hCCCCCCeeeCCCCcceecCC--CCCCCCccCCCcccCCCC
Q 046668 226 GRIPNSIGA-LESILSIDFSANQLYGEIPQSI-SSLTFLSRLKLSNNNLSGKIP--LSTQLQSFDPSSFTGNRL 295 (381)
Q Consensus 226 ~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~--~~~~l~~l~~~~~~~n~l 295 (381)
+..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|+++.... ....++.|+.+++.+|.+
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 555555554 7889999999988875544444 668889999999988854321 123456777777877755
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=6.8e-18 Score=139.89 Aligned_cols=93 Identities=26% Similarity=0.316 Sum_probs=79.1
Q ss_pred cccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeee
Q 046668 187 LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLK 266 (381)
Q Consensus 187 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 266 (381)
+++|+.|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.++...+..+..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 34467777777777767777888899999999999999977778899999999999999999976667788999999999
Q ss_pred CCCCcceecCCCC
Q 046668 267 LSNNNLSGKIPLS 279 (381)
Q Consensus 267 l~~N~l~~~~~~~ 279 (381)
+++|++.|.|...
T Consensus 133 L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 133 IGANPLYCDCNMQ 145 (193)
T ss_dssp CCSSCEECSGGGH
T ss_pred eCCCCeecCCcCH
Confidence 9999999988753
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.6e-17 Score=149.65 Aligned_cols=220 Identities=11% Similarity=0.073 Sum_probs=151.0
Q ss_pred CccEEEcCCCccc--------------------ccCCccccC--------CCCCCEEECcCCcCcccCCccCCCCCCCCE
Q 046668 1 GIRILKLGENHFS--------------------GEIPDCWMN--------WLDLLVLNLGNNNFTGNIPISLGMLSSLQS 52 (381)
Q Consensus 1 ~L~~L~l~~n~l~--------------------~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 52 (381)
+|++|||++|++. .+.+.+|.+ +++|+.++|.+ .++.+.+.+|.+|++|++
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~ 128 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKI 128 (329)
T ss_dssp TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCE
T ss_pred cCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccce
Confidence 5899999999988 233445667 88888888877 777677778888888888
Q ss_pred EEccCCccceeCCccccCCCCCCEEeCcCCcCc---ccCChhHHhcCCCCc--------------------------EEE
Q 046668 53 LNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV---GNVPTWIGIRFSSLM--------------------------ILN 103 (381)
Q Consensus 53 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~l~~L~--------------------------~L~ 103 (381)
|++++|.+..+.+.+|.++.++..+.+..+... ..+....+..+..|+ .+.
T Consensus 129 l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~ 208 (329)
T 3sb4_A 129 CQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLT 208 (329)
T ss_dssp EEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEE
T ss_pred EEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEE
Confidence 888888877777778888777777766553210 011111122333333 222
Q ss_pred cccccccccCCcCc-cCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccc
Q 046668 104 LRSNKFRGVLPNQL-CGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE 182 (381)
Q Consensus 104 L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (381)
+.++-.. .....+ ..+++|+++++++|+++...+.+|.++.+
T Consensus 209 ~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~------------------------------------ 251 (329)
T 3sb4_A 209 IEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY------------------------------------ 251 (329)
T ss_dssp EEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT------------------------------------
T ss_pred EeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC------------------------------------
Confidence 2211100 000011 13688999999999888555566766554
Q ss_pred hhhhcccccEEEccCCcccccCchhhhccccCc-EEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCC
Q 046668 183 YNTILKLMRLIDLSKNKFSGEIPSEIMNLRALV-SLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTF 261 (381)
Q Consensus 183 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 261 (381)
|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|.++...+.+|.++++
T Consensus 252 -------L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 252 -------LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP 322 (329)
T ss_dssp -------CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC
T ss_pred -------CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc
Confidence 666667666 6656777899999999 999988 677677788999999999999999998777788999999
Q ss_pred CCeeeC
Q 046668 262 LSRLKL 267 (381)
Q Consensus 262 L~~L~l 267 (381)
|+.+..
T Consensus 323 L~~ly~ 328 (329)
T 3sb4_A 323 SKLIYK 328 (329)
T ss_dssp CCEEEC
T ss_pred hhhhcc
Confidence 988753
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=5.3e-18 Score=152.91 Aligned_cols=223 Identities=12% Similarity=0.060 Sum_probs=148.2
Q ss_pred CCCCCEEECcCCcCc--ccCCccCCCCCCCCEEEccCCccceeCCccccC--------CCCCCEEeCcCCcCcccCChhH
Q 046668 23 WLDLLVLNLGNNNFT--GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQN--------CTKLVMLDIGENEFVGNVPTWI 92 (381)
Q Consensus 23 l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~ 92 (381)
+++|++|||++|.+. ...+..+. .++.+.+..| .+.+.+|.+ |++|+.++|.+ .+. .++...
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTT
T ss_pred hccCeEEecCcceeEEecCcccccc---cccccccccc---ccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHH
Confidence 566777777777665 22222221 1233333333 234456666 88888888877 665 677766
Q ss_pred HhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcC----CCCcCcccccccccc--------------------
Q 046668 93 GIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHL----SGSIPKCISNISSMV-------------------- 148 (381)
Q Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~-------------------- 148 (381)
+.+|++|+.+++.+|.+....+..|..+.++..+....+.. ......+|..+..|+
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 66778888888888877766667777777666666655221 111223333333332
Q ss_pred ------cccccCCccccCCCCCCCccccceEEEEeccccchh-hhcccccEEEccCCcccccCchhhhccccCcEEeCCC
Q 046668 149 ------TANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN-TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSC 221 (381)
Q Consensus 149 ------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~ 221 (381)
.+.+...-.. .....+ ..+++|+.+++++|+++.+.+..|.++.+|+++++++
T Consensus 200 ~~~~~~~l~~~~~l~~--------------------~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDN--------------------ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp CGGGCSEEEEEECCCH--------------------HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred CccccceEEEeeeecH--------------------HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 2222211000 001111 2267899999999999988888899999999999999
Q ss_pred cccccccChhhhccCCCC-EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceec
Q 046668 222 NSFTGRIPNSIGALESIL-SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGK 275 (381)
Q Consensus 222 n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 275 (381)
| +....+.+|.++++|+ .+++.+ .++.+.+.+|..+++|+.+++++|.+...
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 8 7767788999999999 999998 77767788999999999999999988743
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=8.6e-17 Score=133.21 Aligned_cols=127 Identities=25% Similarity=0.320 Sum_probs=105.0
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 82 (381)
+++++++++++ .+|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+.+|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46888888888 5666543 68999999999998 66788888999999999999998888888999999999999999
Q ss_pred cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCC
Q 046668 83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134 (381)
Q Consensus 83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 134 (381)
++. .++...+..+++|++|+|++|.++...+..|..+++|++|++++|.+.
T Consensus 89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 988 454444447889999999999998666667888999999999999876
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=1.6e-16 Score=129.88 Aligned_cols=133 Identities=23% Similarity=0.250 Sum_probs=114.0
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
.+.+++++++++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 367899999988 456443 37999999999999987778889999999999999999977778889999999999999
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcC
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 138 (381)
|++. .+|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 86 N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9998 5565544479999999999999997766678889999999999999886544
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=8.4e-17 Score=130.31 Aligned_cols=138 Identities=21% Similarity=0.230 Sum_probs=119.4
Q ss_pred CCCCCCEEECcCCcCc-ccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCc
Q 046668 22 NWLDLLVLNLGNNNFT-GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLM 100 (381)
Q Consensus 22 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 100 (381)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+.+|..+. .+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCCC
Confidence 3578999999999998 67888889999999999999999865 7899999999999999999866776654 699999
Q ss_pred EEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcC---cccccccccccccccCCccccCCC
Q 046668 101 ILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIP---KCISNISSMVTANFSIGTDVQYPS 162 (381)
Q Consensus 101 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~l~~~~~~~~~~~~ 162 (381)
+|++++|.+++... ..+..+++|++|++++|.+++..+ ..+..+++|+.+++..+...+.+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 99999999996432 788999999999999999985544 488999999999999887766554
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=8.6e-17 Score=127.53 Aligned_cols=127 Identities=22% Similarity=0.259 Sum_probs=111.9
Q ss_pred CccEEEcCCCccc-ccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668 1 GIRILKLGENHFS-GEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI 79 (381)
Q Consensus 1 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 79 (381)
+|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4789999999998 78888899999999999999999866 78899999999999999999778888889999999999
Q ss_pred cCCcCccc-CChhHHhcCCCCcEEEcccccccccCC---cCccCCCCCCEEeccC
Q 046668 80 GENEFVGN-VPTWIGIRFSSLMILNLRSNKFRGVLP---NQLCGLTSLHVLDLAD 130 (381)
Q Consensus 80 ~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~ 130 (381)
++|++.+. .+..+. .+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 96 s~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999842 224454 89999999999999996655 4788999999999874
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=5.3e-16 Score=126.72 Aligned_cols=89 Identities=20% Similarity=0.189 Sum_probs=63.7
Q ss_pred ccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCC
Q 046668 190 MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSN 269 (381)
Q Consensus 190 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 269 (381)
|+.|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 45555555555544555567777788888888887766666677778888888888888765555567788888888888
Q ss_pred CcceecCCC
Q 046668 270 NNLSGKIPL 278 (381)
Q Consensus 270 N~l~~~~~~ 278 (381)
|++.|.+|.
T Consensus 134 N~~~~~~~~ 142 (177)
T 2o6r_A 134 NPWDCSCPR 142 (177)
T ss_dssp SCBCCCHHH
T ss_pred CCeeccCcc
Confidence 888887763
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=3.3e-16 Score=127.81 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=56.1
Q ss_pred ccEEEcCCCcccccCCccccCC-CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668 2 IRILKLGENHFSGEIPDCWMNW-LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 80 (381)
|++|++++|+++. ++. +..+ ++|++|++++|.+++. ..|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 21 L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 21 DRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred ceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 4445555555442 222 2222 2555555555555433 344445555555555555543333333455555555555
Q ss_pred CCcCcccCCh--hHHhcCCCCcEEEcccccccccCCc----CccCCCCCCEEeccCCc
Q 046668 81 ENEFVGNVPT--WIGIRFSSLMILNLRSNKFRGVLPN----QLCGLTSLHVLDLADNH 132 (381)
Q Consensus 81 ~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~ 132 (381)
+|++. .+|. .+. .+++|++|++++|.+. ..|. .+..+++|+.|++++|.
T Consensus 97 ~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 97 NNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 55543 3333 222 4445555555555544 2222 24444555555555444
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.2e-17 Score=162.65 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=28.5
Q ss_pred cccCcEEeCCCcccccccChhhh-ccCCCCEEecc--C----CcCccc-----CchhhhCCCCCCeeeCCC
Q 046668 211 LRALVSLDLSCNSFTGRIPNSIG-ALESILSIDFS--A----NQLYGE-----IPQSISSLTFLSRLKLSN 269 (381)
Q Consensus 211 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~-----~~~~l~~l~~L~~L~l~~ 269 (381)
+++|++|+++.|.+++.....+. .+++|++|+++ + +.++.. ++..+..+++|+.|++++
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 55555555555555543333332 35566666666 2 333311 112244555666666655
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=4e-15 Score=137.10 Aligned_cols=240 Identities=11% Similarity=0.110 Sum_probs=184.9
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
++.+.+..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+++.+.. .++.+.+.+|.+|.+|+.+++.+
T Consensus 115 l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 115 YNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred ccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 445555543 555667788886 7999999876 776888889884 799999986 67768889999999999999999
Q ss_pred CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP 161 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 161 (381)
|++. .++...+ .+.+|+.+.+.++ ++.....+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+... ...++
T Consensus 190 n~l~-~I~~~aF-~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I~ 263 (401)
T 4fdw_A 190 TKIT-KLPASTF-VYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNIA 263 (401)
T ss_dssp SCCS-EECTTTT-TTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCEEC
T ss_pred Ccce-EechhhE-eecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccEEC
Confidence 9997 7888887 4789999999855 77677789999999999999875 44455567776 67777776432 11111
Q ss_pred CCCCCccccceEEEEeccccchhhhcccccEEEccCCccc-----ccCchhhhccccCcEEeCCCcccccccChhhhccC
Q 046668 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFS-----GEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE 236 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 236 (381)
. ..+..+++|+.+++.+|.+. ...+..|.++++|+.+++.+ .++.....+|.+++
T Consensus 264 ~-------------------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~ 323 (401)
T 4fdw_A 264 S-------------------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNR 323 (401)
T ss_dssp T-------------------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCC
T ss_pred h-------------------hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCC
Confidence 1 12234677999999887664 45667899999999999994 47767778899999
Q ss_pred CCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668 237 SILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274 (381)
Q Consensus 237 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 274 (381)
+|+.+.+..| ++..-..+|..+ +|+.+++.+|....
T Consensus 324 ~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 324 KVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp SCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred CccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 9999999665 665667788888 89999999987653
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=1.3e-14 Score=133.70 Aligned_cols=240 Identities=10% Similarity=0.057 Sum_probs=180.4
Q ss_pred cCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCc
Q 046668 21 MNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLM 100 (381)
Q Consensus 21 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 100 (381)
..+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+++.+ .+. .++...+.+|.+|+
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLK 183 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCC
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCC
Confidence 3457889999965 4666788899885 7999999877 776888899985 799999986 565 67777777899999
Q ss_pred EEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccc
Q 046668 101 ILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180 (381)
Q Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (381)
.+++.+|.++......|. ..+|+.+.+..+ +......+|.++.+|+.+.+..+- ..++. ..
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l-~~I~~----------------~a 244 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENV-STIGQ----------------EA 244 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTC-CEECT----------------TT
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCc-cCccc----------------cc
Confidence 999999999976667777 589999999855 665667889999999998876431 11111 11
Q ss_pred cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccc-----cccChhhhccCCCCEEeccCCcCcccCchh
Q 046668 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFT-----GRIPNSIGALESILSIDFSANQLYGEIPQS 255 (381)
Q Consensus 181 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 255 (381)
+ .. ..|+.+.+ .+.++.+...+|.++++|+.+++.+|.+. ...+.+|.++++|+.+++. +.++..-..+
T Consensus 245 F---~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~a 318 (401)
T 4fdw_A 245 F---RE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGL 318 (401)
T ss_dssp T---TT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTT
T ss_pred c---cc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhh
Confidence 1 11 46888888 45566567788999999999999888765 4566789999999999999 4577666788
Q ss_pred hhCCCCCCeeeCCCCcceecCCCC--CCCCccCCCcccCCC
Q 046668 256 ISSLTFLSRLKLSNNNLSGKIPLS--TQLQSFDPSSFTGNR 294 (381)
Q Consensus 256 l~~l~~L~~L~l~~N~l~~~~~~~--~~l~~l~~~~~~~n~ 294 (381)
|..+++|+.+++..| +. .++.. ... .|+.+.+.+|.
T Consensus 319 F~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred hcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence 999999999999765 33 22221 223 56666677663
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=2.8e-15 Score=122.24 Aligned_cols=133 Identities=18% Similarity=0.201 Sum_probs=111.9
Q ss_pred ccccCCCCCCEEECcCCcCcccCCccCCCCC-CCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcC
Q 046668 18 DCWMNWLDLLVLNLGNNNFTGNIPISLGMLS-SLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRF 96 (381)
Q Consensus 18 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 96 (381)
..+.++.+|++|++++|.++. ++. +..+. +|++|++++|.+++. ..|.++++|++|++++|.+. .+|..++..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL 87 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence 346788999999999999984 454 44454 999999999999965 68999999999999999998 5676665589
Q ss_pred CCCcEEEcccccccccCCc--CccCCCCCCEEeccCCcCCCCcCcc----cccccccccccccCCcc
Q 046668 97 SSLMILNLRSNKFRGVLPN--QLCGLTSLHVLDLADNHLSGSIPKC----ISNISSMVTANFSIGTD 157 (381)
Q Consensus 97 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~l~~~~~~~ 157 (381)
++|++|++++|.++ .+|. .+..+++|++|++++|.+. ..|.. +..+++|+.++++.+..
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999999997 4454 7889999999999999998 55664 88999999998876653
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=7.2e-15 Score=119.02 Aligned_cols=92 Identities=21% Similarity=0.191 Sum_probs=84.2
Q ss_pred ccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeC
Q 046668 188 KLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKL 267 (381)
Q Consensus 188 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 267 (381)
+.++.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44899999999999888999999999999999999999777777899999999999999999777778999999999999
Q ss_pred CCCcceecCCCC
Q 046668 268 SNNNLSGKIPLS 279 (381)
Q Consensus 268 ~~N~l~~~~~~~ 279 (381)
++|++.|.++..
T Consensus 110 ~~N~~~c~c~~l 121 (170)
T 3g39_A 110 LNNPWDCACSDI 121 (170)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCCCCCchhH
Confidence 999999988743
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=9.8e-17 Score=133.60 Aligned_cols=153 Identities=20% Similarity=0.307 Sum_probs=86.8
Q ss_pred CCCCCCEEeCcCCcCcccCCh------hHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccc
Q 046668 70 NCTKLVMLDIGENEFVGNVPT------WIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISN 143 (381)
Q Consensus 70 ~l~~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 143 (381)
....++.++++.+.+.+.+|. .+. .+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 334444444444444444433 443 55666666666666654 34 5555666666666666655 33332221
Q ss_pred ccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcc
Q 046668 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNS 223 (381)
Q Consensus 144 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~ 223 (381)
+++|+.|++++|++++ +| .+..+++|++|++++|.
T Consensus 92 -------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 92 -------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp -------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred -------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence 3446666666666654 23 46667777777777777
Q ss_pred cccccC-hhhhccCCCCEEeccCCcCcccCch----------hhhCCCCCCeeeCCCCcce
Q 046668 224 FTGRIP-NSIGALESILSIDFSANQLYGEIPQ----------SISSLTFLSRLKLSNNNLS 273 (381)
Q Consensus 224 l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~l~~l~~L~~L~l~~N~l~ 273 (381)
+++..+ ..+..+++|++|++++|.+++..|. .+..+++|+.|| +|+++
T Consensus 127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 763222 3566677777777777777654443 256777777776 55543
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=9.9e-18 Score=139.67 Aligned_cols=144 Identities=22% Similarity=0.254 Sum_probs=120.0
Q ss_pred ccEEEcCCCcccccCCc------cccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCC
Q 046668 2 IRILKLGENHFSGEIPD------CWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLV 75 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 75 (381)
++.++++.+.+.+..|. .|.++++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 45566777777777666 89999999999999999986 56 8889999999999999998 6788888889999
Q ss_pred EEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcCc----------ccccc
Q 046668 76 MLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIPK----------CISNI 144 (381)
Q Consensus 76 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l 144 (381)
+|++++|++. .+| .+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|. .+..+
T Consensus 97 ~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 97 ELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp EEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred EEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 9999999998 466 444 78999999999999985432 4688999999999999999765544 26778
Q ss_pred ccccccc
Q 046668 145 SSMVTAN 151 (381)
Q Consensus 145 ~~L~~l~ 151 (381)
++|+.++
T Consensus 174 ~~L~~Ld 180 (198)
T 1ds9_A 174 PNLKKLD 180 (198)
T ss_dssp SSCSEEC
T ss_pred CCcEEEC
Confidence 8888775
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=1.9e-14 Score=116.52 Aligned_cols=107 Identities=21% Similarity=0.322 Sum_probs=81.0
Q ss_pred CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEc
Q 046668 25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL 104 (381)
Q Consensus 25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 104 (381)
..+++++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++. .+|...+..+++|++|+|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence 3567788888877 4555543 67888888888888777777888888888888888887 566555447788888888
Q ss_pred ccccccccCCcCccCCCCCCEEeccCCcCCC
Q 046668 105 RSNKFRGVLPNQLCGLTSLHVLDLADNHLSG 135 (381)
Q Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 135 (381)
++|.+++..+..|..+++|++|++++|.+..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 8888886666678888888888888888764
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=3.2e-14 Score=115.57 Aligned_cols=105 Identities=22% Similarity=0.322 Sum_probs=87.0
Q ss_pred CCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcc
Q 046668 26 LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLR 105 (381)
Q Consensus 26 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 105 (381)
-+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++. .+|...+..+++|++|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 478888888887 5666654 78889999999988877888889999999999999887 5676655578899999999
Q ss_pred cccccccCCcCccCCCCCCEEeccCCcCC
Q 046668 106 SNKFRGVLPNQLCGLTSLHVLDLADNHLS 134 (381)
Q Consensus 106 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 134 (381)
+|.+++..+..|..+++|++|++++|.+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 99998666666888999999999999887
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=5.4e-14 Score=114.21 Aligned_cols=105 Identities=24% Similarity=0.274 Sum_probs=92.6
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668 3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82 (381)
Q Consensus 3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 82 (381)
+.+++++|+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57899999997 6777654 89999999999999888999999999999999999999777777899999999999999
Q ss_pred cCcccCChhHHhcCCCCcEEEcccccccc
Q 046668 83 EFVGNVPTWIGIRFSSLMILNLRSNKFRG 111 (381)
Q Consensus 83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 111 (381)
++. .+|...+..+++|++|+|++|.+..
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCccc
Confidence 998 6776645489999999999999884
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=4.1e-15 Score=135.74 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=38.1
Q ss_pred ccEEEccCCccccc----CchhhhccccCcEEeCCCccccccc----ChhhhccCCCCEEeccCCcCccc----Cchhhh
Q 046668 190 MRLIDLSKNKFSGE----IPSEIMNLRALVSLDLSCNSFTGRI----PNSIGALESILSIDFSANQLYGE----IPQSIS 257 (381)
Q Consensus 190 L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~ 257 (381)
|+.|+|++|.++.. ++..+...++|++|+|++|.+.+.. +..+...++|++|+|++|.++.. +...+.
T Consensus 157 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~ 236 (372)
T 3un9_A 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR 236 (372)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH
T ss_pred cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH
Confidence 45555555544321 1222344455555555555554321 23334444555555555555421 222333
Q ss_pred CCCCCCeeeCCCCcce
Q 046668 258 SLTFLSRLKLSNNNLS 273 (381)
Q Consensus 258 ~l~~L~~L~l~~N~l~ 273 (381)
..++|++|++++|+++
T Consensus 237 ~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 237 EHPSLELLHLYFNELS 252 (372)
T ss_dssp HCSSCCEEECTTSSCC
T ss_pred hCCCCCEEeccCCCCC
Confidence 4455555555555543
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=1.2e-14 Score=132.62 Aligned_cols=188 Identities=15% Similarity=0.074 Sum_probs=118.8
Q ss_pred CCCCCEEECcCCcCcccCCccCC-----CCCCCCEEEccCCccceeCCccc-cCCCCCCEEeCcCCcCcccCChhHH---
Q 046668 23 WLDLLVLNLGNNNFTGNIPISLG-----MLSSLQSLNLRKNSLSGQIPASF-QNCTKLVMLDIGENEFVGNVPTWIG--- 93 (381)
Q Consensus 23 l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~--- 93 (381)
+++|+.|+|++|.++......+. ..++|++|+|++|.+.......+ ..+++|++|+|++|.+.+.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46788888888888744333332 23688889998888764333333 3456788999999988643323322
Q ss_pred -hcCCCCcEEEccccccccc----CCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCcc
Q 046668 94 -IRFSSLMILNLRSNKFRGV----LPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKY 168 (381)
Q Consensus 94 -~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 168 (381)
...++|++|+|++|.++.. ++..+...++|++|+|++|.+.+.....+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~-------------------------- 204 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA-------------------------- 204 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH--------------------------
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH--------------------------
Confidence 2357799999999988642 334456778899999999987632111111
Q ss_pred ccceEEEEeccccchhhhcccccEEEccCCcccccC----chhhhccccCcEEeCCCcccccccChhhhccC-----CCC
Q 046668 169 VEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI----PSEIMNLRALVSLDLSCNSFTGRIPNSIGALE-----SIL 239 (381)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~ 239 (381)
..+...+.|+.|++++|.+++.. +..+...++|++|+|++|.+++.....+..+. .|+
T Consensus 205 -------------~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~ 271 (372)
T 3un9_A 205 -------------AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271 (372)
T ss_dssp -------------HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CE
T ss_pred -------------HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccch
Confidence 11122456888899998887543 33455678899999999998865555554332 266
Q ss_pred EEe--ccCCcCc
Q 046668 240 SID--FSANQLY 249 (381)
Q Consensus 240 ~L~--L~~n~l~ 249 (381)
.+. +..+.+.
T Consensus 272 ~l~~ll~~~~~~ 283 (372)
T 3un9_A 272 VVVSLTEGTAVS 283 (372)
T ss_dssp EECCCC----CH
T ss_pred hhHhhhcCCccC
Confidence 666 6666665
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=1.1e-12 Score=118.82 Aligned_cols=103 Identities=19% Similarity=0.163 Sum_probs=75.7
Q ss_pred EEEcCCC-cccccCCccccCCCCCCEEECcC-CcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 4 ILKLGEN-HFSGEIPDCWMNWLDLLVLNLGN-NNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 4 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
.++.+++ +++ .+|. +..+++|++|+|++ |.++++.+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566776 677 4666 77777888888875 778777777788888888888888888877777788888888888888
Q ss_pred CcCcccCChhHHhcCCCCcEEEccccccc
Q 046668 82 NEFVGNVPTWIGIRFSSLMILNLRSNKFR 110 (381)
Q Consensus 82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 110 (381)
|++. .+|...+..++ |+.|+|.+|.+.
T Consensus 90 N~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred Cccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 8876 56655553333 777777777765
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.34 E-value=3.3e-11 Score=111.07 Aligned_cols=137 Identities=12% Similarity=0.073 Sum_probs=83.7
Q ss_pred ccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcC-------
Q 046668 12 FSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF------- 84 (381)
Q Consensus 12 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l------- 84 (381)
++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+-.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 44455667777777887777643 66566677777777887777654 4445566677777666665543210
Q ss_pred -------------cccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccccccccccc
Q 046668 85 -------------VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTAN 151 (381)
Q Consensus 85 -------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 151 (381)
...+....+.++.+|+.+.+.++. .......|.++++|+.+++..+ +......+|.++..|+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 012333445567788888886553 3355567777778887777665 3323345566665555554
Q ss_pred c
Q 046668 152 F 152 (381)
Q Consensus 152 ~ 152 (381)
+
T Consensus 215 ~ 215 (394)
T 4fs7_A 215 F 215 (394)
T ss_dssp C
T ss_pred c
Confidence 3
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=8.5e-12 Score=113.04 Aligned_cols=105 Identities=20% Similarity=0.138 Sum_probs=90.8
Q ss_pred CEEECcCC-cCcccCCccCCCCCCCCEEEccC-CccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEc
Q 046668 27 LVLNLGNN-NFTGNIPISLGMLSSLQSLNLRK-NSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL 104 (381)
Q Consensus 27 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 104 (381)
..++++++ .++ .+|. |..+++|++|+|++ |.+++..+..|.++++|++|+|++|++.+..|..+. .+++|++|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG-SCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc-CCcCCCEEeC
Confidence 45689888 898 5777 99999999999996 999988889999999999999999999865554444 8999999999
Q ss_pred ccccccccCCcCccCCCCCCEEeccCCcCCC
Q 046668 105 RSNKFRGVLPNQLCGLTSLHVLDLADNHLSG 135 (381)
Q Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 135 (381)
++|.+++..+..|..++ |+.|++.+|.+..
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999976666777666 9999999999873
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.24 E-value=2.7e-10 Score=104.92 Aligned_cols=125 Identities=11% Similarity=0.086 Sum_probs=62.1
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc---------------------c
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS---------------------L 60 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---------------------l 60 (381)
|+.+.+..+ ++.+...+|.+|.+|+.+++..+ ++.+...+|.++.+|+.+.+..+- +
T Consensus 73 L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~ 150 (394)
T 4fs7_A 73 VTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGV 150 (394)
T ss_dssp EEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTC
T ss_pred ceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccc
Confidence 455555432 44444555666666666666533 443444555555555554443221 0
Q ss_pred ceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCC
Q 046668 61 SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADN 131 (381)
Q Consensus 61 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 131 (381)
......+|.++.+|+.+++.++. . .++...+.++.+|+.+.+..+ ++......|.++..|+.+.+..+
T Consensus 151 ~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 151 TVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp CEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred cccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 11223345555666666665442 2 344444445566666665544 33344455555566665555544
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.17 E-value=1.7e-09 Score=99.66 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=42.9
Q ss_pred cccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeee
Q 046668 187 LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLK 266 (381)
Q Consensus 187 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 266 (381)
...|+.+.+. +.+..+....|.++.+|++++|..+ ++.....+|.++.+|+.+.+..+ ++..-..+|.++++|+.++
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 3445555553 2233334445556666666666543 33344455666666666666433 4433345566666666666
Q ss_pred CCCCc
Q 046668 267 LSNNN 271 (381)
Q Consensus 267 l~~N~ 271 (381)
+.++.
T Consensus 364 ~~~~~ 368 (394)
T 4gt6_A 364 YSGSR 368 (394)
T ss_dssp ESSCH
T ss_pred ECCce
Confidence 66553
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.16 E-value=5.3e-11 Score=107.71 Aligned_cols=164 Identities=14% Similarity=0.178 Sum_probs=91.7
Q ss_pred ccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCc--cCCCCCCEEeccCC--cCCCCcCccc
Q 046668 66 ASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQL--CGLTSLHVLDLADN--HLSGSIPKCI 141 (381)
Q Consensus 66 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n--~l~~~~~~~~ 141 (381)
..+..+|+|+.|++++|.-. .++. + .+++|++|++..+.+.......+ ..+|+|++|+|+.+ ...+. ..+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~--~~~ 239 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD--GDM 239 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC--SCG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc--hhH
Confidence 44456677777777666311 2332 2 35677777777666543222222 25677777777532 11111 001
Q ss_pred ccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhh---ccccCcEEe
Q 046668 142 SNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM---NLRALVSLD 218 (381)
Q Consensus 142 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~---~l~~L~~L~ 218 (381)
..+. .+ +. ...+++|+.|++.+|.+.+..+..+. .+++|++|+
T Consensus 240 ~~l~---~~-l~------------------------------~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~Ld 285 (362)
T 2ra8_A 240 NVFR---PL-FS------------------------------KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285 (362)
T ss_dssp GGTG---GG-SC------------------------------TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEE
T ss_pred HHHH---HH-Hh------------------------------cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEE
Confidence 0100 00 00 01256688888888877644333332 477888899
Q ss_pred CCCccccccc----ChhhhccCCCCEEeccCCcCcccCchhhhC-CCCCCeeeCCCCc
Q 046668 219 LSCNSFTGRI----PNSIGALESILSIDFSANQLYGEIPQSISS-LTFLSRLKLSNNN 271 (381)
Q Consensus 219 Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~N~ 271 (381)
|+.|.+.+.. +..+..+++|++|++++|.++...-..+.. + ...+++++++
T Consensus 286 Ls~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 9888887543 333456788999999988887543333433 2 3567888776
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.11 E-value=6.1e-11 Score=107.28 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=30.6
Q ss_pred cccCcEEeCCCcccccccChhhh---ccCCCCEEeccCCcCccc----CchhhhCCCCCCeeeCCCCcce
Q 046668 211 LRALVSLDLSCNSFTGRIPNSIG---ALESILSIDFSANQLYGE----IPQSISSLTFLSRLKLSNNNLS 273 (381)
Q Consensus 211 l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~N~l~ 273 (381)
+++|++|+|.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 45566666655555432222222 345566666665555432 1222234455666666555543
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.06 E-value=4.5e-09 Score=96.76 Aligned_cols=261 Identities=10% Similarity=0.097 Sum_probs=148.0
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCc---CcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEe
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNN---FTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLD 78 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 78 (381)
|+.+.+..+ ++.+...+|.+|.+|+.+.+..+. ++.+-..+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 667777654 565777889999999999987653 66566677888888887777654 4445666777777777777
Q ss_pred CcCCcCcccCChhHHhcCCCCcEEEcccccc---------------------cccCCcCccCCCCCCEEeccCCcC----
Q 046668 79 IGENEFVGNVPTWIGIRFSSLMILNLRSNKF---------------------RGVLPNQLCGLTSLHVLDLADNHL---- 133 (381)
Q Consensus 79 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l---------------------~~~~~~~~~~l~~L~~L~L~~n~l---- 133 (381)
+..+ +. .++...+..+.+|+.+.+.++-- .......|..+.++.......+..
T Consensus 144 lp~~-~~-~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~ 221 (394)
T 4gt6_A 144 IPEG-VT-SVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAID 221 (394)
T ss_dssp CCTT-CC-EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSS
T ss_pred ccce-ee-eecccceecccccccccccceeeEeccccccccceeEEEECCcccccccchhhhccccceeccccccccccc
Confidence 7543 22 34444444555555555543211 111223344444444333221110
Q ss_pred --------------------------------CCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEecc--
Q 046668 134 --------------------------------SGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK-- 179 (381)
Q Consensus 134 --------------------------------~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 179 (381)
......+|..+..|+.+.+...... ................+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~i~ 300 (394)
T 4gt6_A 222 NVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSRIT 300 (394)
T ss_dssp SCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTCC
T ss_pred ceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCCccc
Confidence 0011234566666666655432211 11111111111111111111
Q ss_pred --ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhh
Q 046668 180 --AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSIS 257 (381)
Q Consensus 180 --~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 257 (381)
....+..+.+|+.+.+..+ ++.+...+|.++.+|+++.+..+ ++.....+|.++++|+.+++.++.... ..+.
T Consensus 301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~ 375 (394)
T 4gt6_A 301 ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAIS 375 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCB
T ss_pred ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhh
Confidence 1122445788999999764 55566778999999999999765 665667889999999999999886542 3556
Q ss_pred CCCCCCeeeCCCCcc
Q 046668 258 SLTFLSRLKLSNNNL 272 (381)
Q Consensus 258 ~l~~L~~L~l~~N~l 272 (381)
....|+.+.+..|.+
T Consensus 376 ~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 376 TDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCCCC----------
T ss_pred ccCCCCEEEeCCCCE
Confidence 677888888776543
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.83 E-value=2.8e-07 Score=84.24 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=52.0
Q ss_pred cccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeee
Q 046668 187 LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLK 266 (381)
Q Consensus 187 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 266 (381)
...|+.+.+..+ ++.+....|..+..|+.+.+..+ +......+|.++++|+.+.+.++.++..-..+|..+.+|+.++
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred CccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 455666666554 44344556667777777777544 4434455667777777777777766655556677777777777
Q ss_pred CCCC
Q 046668 267 LSNN 270 (381)
Q Consensus 267 l~~N 270 (381)
+..+
T Consensus 317 lp~~ 320 (379)
T 4h09_A 317 LPTA 320 (379)
T ss_dssp CCTT
T ss_pred cCcc
Confidence 7543
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.65 E-value=8.8e-09 Score=88.48 Aligned_cols=79 Identities=24% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCCCCCEEEccCCccce--eCCccccCCCCCCEEeCcCCcCcccCChhHHhcCC--CCcEEEcccccccccCC-------
Q 046668 46 MLSSLQSLNLRKNSLSG--QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFS--SLMILNLRSNKFRGVLP------- 114 (381)
Q Consensus 46 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~------- 114 (381)
++++|++|+|++|.+++ .+|..+..+++|+.|+|++|++.+. ..+. .+. +|++|+|++|.+.+..|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~-~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD-KIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG-GGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh-hcccCCcceEEccCCcCccccCcchhHHH
Confidence 34455555555555543 2234444555555555555555421 1111 222 55555555555554333
Q ss_pred cCccCCCCCCEEe
Q 046668 115 NQLCGLTSLHVLD 127 (381)
Q Consensus 115 ~~~~~l~~L~~L~ 127 (381)
..+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1244455555554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=4.9e-09 Score=85.67 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=80.1
Q ss_pred ccccCCCCCCEEECcCC-cCccc----CCccCCCCCCCCEEEccCCcccee----CCccccCCCCCCEEeCcCCcCccc-
Q 046668 18 DCWMNWLDLLVLNLGNN-NFTGN----IPISLGMLSSLQSLNLRKNSLSGQ----IPASFQNCTKLVMLDIGENEFVGN- 87 (381)
Q Consensus 18 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~- 87 (381)
..+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566788999999888 77632 445566678888999988887632 344556667888899988888643
Q ss_pred ---CChhHHhcCCCCcEEEc--cccccccc----CCcCccCCCCCCEEeccCCcCC
Q 046668 88 ---VPTWIGIRFSSLMILNL--RSNKFRGV----LPNQLCGLTSLHVLDLADNHLS 134 (381)
Q Consensus 88 ---~~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 134 (381)
+...+. ..++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 222222 4567888888 77887643 2344555678888888888765
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=7.8e-09 Score=84.45 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=84.4
Q ss_pred CccEEEcCCC-ccccc----CCccccCCCCCCEEECcCCcCccc----CCccCCCCCCCCEEEccCCcccee----CCcc
Q 046668 1 GIRILKLGEN-HFSGE----IPDCWMNWLDLLVLNLGNNNFTGN----IPISLGMLSSLQSLNLRKNSLSGQ----IPAS 67 (381)
Q Consensus 1 ~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~ 67 (381)
+|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+... +..+
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 4789999999 87642 345566789999999999999743 344555678999999999998743 4567
Q ss_pred ccCCCCCCEEeC--cCCcCcccC----ChhHHhcCCCCcEEEccccccc
Q 046668 68 FQNCTKLVMLDI--GENEFVGNV----PTWIGIRFSSLMILNLRSNKFR 110 (381)
Q Consensus 68 ~~~l~~L~~L~L--~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~ 110 (381)
+...+.|++|+| ++|.+.... ...+. ..++|++|+|++|.+.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH-HCSSCCEEECCCSSHH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHH-hCCCcCEEeccCCCCC
Confidence 788899999999 889886432 22232 4689999999999886
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=2.6e-07 Score=79.30 Aligned_cols=67 Identities=24% Similarity=0.357 Sum_probs=35.5
Q ss_pred hccccCcEEeCCCccccc--ccChhhhccCCCCEEeccCCcCcccCchhhhCCC--CCCeeeCCCCcceecCC
Q 046668 209 MNLRALVSLDLSCNSFTG--RIPNSIGALESILSIDFSANQLYGEIPQSISSLT--FLSRLKLSNNNLSGKIP 277 (381)
Q Consensus 209 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~N~l~~~~~ 277 (381)
..+++|++|+|++|.+++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345566666666666654 2334445556666666666666533 1122222 56666666666655443
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.43 E-value=1.4e-05 Score=72.87 Aligned_cols=240 Identities=8% Similarity=-0.042 Sum_probs=149.8
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668 2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81 (381)
Q Consensus 2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 81 (381)
|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +..+...+|.+. +++.+.+..+ ++.+...+|.++.+++...+..
T Consensus 93 l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 93 LQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred CceEECCce-eeEeccceeccC-CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhccccccccccccc
Confidence 444555433 443455667664 7999999765 443556677654 6777776654 4557778888999999888766
Q ss_pred CcCcccCChh-----------HHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccc
Q 046668 82 NEFVGNVPTW-----------IGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTA 150 (381)
Q Consensus 82 n~l~~~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 150 (381)
+......... .+.....+..+.+.... .......+....+|+.+.+..+ +......++..+..|+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i 245 (379)
T 4h09_A 168 NNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEI 245 (379)
T ss_dssp TCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEE
T ss_pred ccceeecccceecccccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEE
Confidence 5432110000 01123445555544332 2244456667777888877654 332445667777777766
Q ss_pred cccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccCh
Q 046668 151 NFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPN 230 (381)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 230 (381)
.+...- ..+.. ..+.....|+.+.+..+ +.......|.++.+|+.+.+.++.++.....
T Consensus 246 ~lp~~v-~~I~~-------------------~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~ 304 (379)
T 4h09_A 246 AIPKNV-TSIGS-------------------FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPR 304 (379)
T ss_dssp EECTTC-CEECT-------------------TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred EcCCCc-cEeCc-------------------cccceeehhcccccccc-ceeccccccccccccccccccccccceehhh
Confidence 654321 11100 11122455777777543 4445566788999999999998888866778
Q ss_pred hhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCC
Q 046668 231 SIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNN 270 (381)
Q Consensus 231 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N 270 (381)
+|.++.+|+.+.+..+ ++.+-..+|.++.+|+.+.+..+
T Consensus 305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 8999999999999755 65455678888899998877543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.34 E-value=8e-08 Score=76.66 Aligned_cols=92 Identities=10% Similarity=0.061 Sum_probs=64.7
Q ss_pred CCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-cceeCCccccCC----CCCCEEeCcCCc-CcccCC
Q 046668 16 IPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-LSGQIPASFQNC----TKLVMLDIGENE-FVGNVP 89 (381)
Q Consensus 16 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~ 89 (381)
+|.....-..|+.||++++.++..--..+.++++|++|+|++|. +++.--..+..+ ++|++|+|++|. +++.--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433334578999999998876655667889999999999985 554433445554 479999999985 553333
Q ss_pred hhHHhcCCCCcEEEccccc
Q 046668 90 TWIGIRFSSLMILNLRSNK 108 (381)
Q Consensus 90 ~~~~~~l~~L~~L~L~~n~ 108 (381)
..+. .+++|++|+++++.
T Consensus 133 ~~L~-~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALH-HFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGG-GCTTCCEEEEESCT
T ss_pred HHHh-cCCCCCEEECCCCC
Confidence 3444 68899999998875
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=4.5e-07 Score=72.31 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=68.4
Q ss_pred ccccEEEccCCcccccCchhhhccccCcEEeCCCcc-cccccChhhhcc----CCCCEEeccCCc-CcccCchhhhCCCC
Q 046668 188 KLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNS-FTGRIPNSIGAL----ESILSIDFSANQ-LYGEIPQSISSLTF 261 (381)
Q Consensus 188 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 261 (381)
..|+.|+++++.++...-..+.++++|++|+|++|. +++..-..++.+ ++|++|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 359999999999887766778899999999999995 776555556654 479999999985 77554556778999
Q ss_pred CCeeeCCCCc
Q 046668 262 LSRLKLSNNN 271 (381)
Q Consensus 262 L~~L~l~~N~ 271 (381)
|++|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.84 E-value=2.6e-05 Score=59.19 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=49.4
Q ss_pred cEEeCCCcccc-cccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668 215 VSLDLSCNSFT-GRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS 279 (381)
Q Consensus 215 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 279 (381)
..++.+++.++ ..+|..+ .++|++|+|++|+|+...+..|..+++|+.|+|++|+|.|+|...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~ 74 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLV 74 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccH
Confidence 36777777775 2455433 257899999999999777778889999999999999999988754
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.36 E-value=0.00042 Score=52.41 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=42.2
Q ss_pred CEEECcCCcCc-ccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCc
Q 046668 27 LVLNLGNNNFT-GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85 (381)
Q Consensus 27 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 85 (381)
..++.+++.++ ..+|..+. .+|++|+|++|.|+.+.+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 34555443 46888888888888777777888888888888888763
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.29 E-value=0.0001 Score=59.79 Aligned_cols=115 Identities=10% Similarity=0.095 Sum_probs=79.2
Q ss_pred ccCCCCCCEEECcCC-cCcc----cCCccCCCCCCCCEEEccCCcccee----CCccccCCCCCCEEeCcCCcCcccCCh
Q 046668 20 WMNWLDLLVLNLGNN-NFTG----NIPISLGMLSSLQSLNLRKNSLSGQ----IPASFQNCTKLVMLDIGENEFVGNVPT 90 (381)
Q Consensus 20 ~~~l~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~ 90 (381)
+.+-+.|++|+|++| .|.. .+.+++..-+.|++|+|++|.+... +.+++..-+.|++|+|++|.+.+.-..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 455678999999985 7753 2445666678999999999998743 334455678899999999998743333
Q ss_pred hHHh---cCCCCcEEEccccc---ccc----cCCcCccCCCCCCEEeccCCcCC
Q 046668 91 WIGI---RFSSLMILNLRSNK---FRG----VLPNQLCGLTSLHVLDLADNHLS 134 (381)
Q Consensus 91 ~~~~---~l~~L~~L~L~~n~---l~~----~~~~~~~~l~~L~~L~L~~n~l~ 134 (381)
.+.. .-..|++|+|+++. +.. .+...+..-+.|+.|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3322 23569999998653 332 12344555678999999877653
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.27 E-value=8.4e-05 Score=60.31 Aligned_cols=114 Identities=15% Similarity=0.143 Sum_probs=75.1
Q ss_pred CccCCCCCCCCEEEccCC-ccce----eCCccccCCCCCCEEeCcCCcCccc----CChhHHhcCCCCcEEEcccccccc
Q 046668 41 PISLGMLSSLQSLNLRKN-SLSG----QIPASFQNCTKLVMLDIGENEFVGN----VPTWIGIRFSSLMILNLRSNKFRG 111 (381)
Q Consensus 41 ~~~~~~l~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~ 111 (381)
...+.+-+.|++|+|++| .+.. .+.+++..-..|+.|+|++|++.+. +...+. .-..|++|+|++|.|..
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCH
Confidence 334456678999999985 6642 2345667778899999999988632 222232 45789999999999874
Q ss_pred c----CCcCccCCCCCCEEeccCCc---CCC----CcCcccccccccccccccCC
Q 046668 112 V----LPNQLCGLTSLHVLDLADNH---LSG----SIPKCISNISSMVTANFSIG 155 (381)
Q Consensus 112 ~----~~~~~~~l~~L~~L~L~~n~---l~~----~~~~~~~~l~~L~~l~~~~~ 155 (381)
. +...+..-+.|++|+|++|. +.. .+..++..-+.|..++++.+
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2 23445555679999998653 332 12334555567777776544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=87.14 E-value=1.7 Score=30.57 Aligned_cols=47 Identities=11% Similarity=-0.038 Sum_probs=25.4
Q ss_pred cccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCC
Q 046668 11 HFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKN 58 (381)
Q Consensus 11 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 58 (381)
.++.+...+|.+|.+|+.+.|-.+ ++.+-..+|.++.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444555666666666666543 33345555666666666655543
No 166
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=85.92 E-value=0.28 Score=28.51 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=7.7
Q ss_pred hhHHHHHHHHhhhhhccch
Q 046668 340 GFVVGFWFVMGPLFVSRKW 358 (381)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~ 358 (381)
|+++.+++++++++++|+.
T Consensus 20 Gv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 20 ALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3444333333434444443
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.64 E-value=1.2 Score=31.45 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=36.0
Q ss_pred CCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668 33 NNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82 (381)
Q Consensus 33 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 82 (381)
+..++.+...+|.++.+|+.+.+..+ ++.+-..+|.+|.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34566677778888888888888765 44466778888888888887654
No 168
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=84.43 E-value=0.24 Score=28.74 Aligned_cols=18 Identities=6% Similarity=-0.099 Sum_probs=7.3
Q ss_pred hHHHHHHHHhhhhhccch
Q 046668 341 FVVGFWFVMGPLFVSRKW 358 (381)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~ 358 (381)
+++.++++++.++++|+.
T Consensus 20 v~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333333333434444443
No 169
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=84.23 E-value=0.31 Score=28.26 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=10.1
Q ss_pred eeehhhhhHHHHHHHHhhhhhccch
Q 046668 334 YVSLALGFVVGFWFVMGPLFVSRKW 358 (381)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (381)
..+.++|+++.+++.+++++|.||.
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheehh
Confidence 3444455333333333334444433
No 170
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=82.26 E-value=0.58 Score=26.26 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=10.7
Q ss_pred eeehhhhhHHHHHHHHhhhhh
Q 046668 334 YVSLALGFVVGFWFVMGPLFV 354 (381)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~ 354 (381)
..+++++.++++++++++.++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHH
Confidence 445556666555544444333
No 171
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=72.35 E-value=2.3 Score=22.70 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=10.9
Q ss_pred hhhhhHHHHHHHHhhhhhccchh
Q 046668 337 LALGFVVGFWFVMGPLFVSRKWR 359 (381)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~ 359 (381)
+++|.++++.++-.-++|||.+|
T Consensus 12 ~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEEcccc
Confidence 34455555444444455554443
No 172
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=57.79 E-value=2.9 Score=23.19 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=2.6
Q ss_pred hhhhccc
Q 046668 351 PLFVSRK 357 (381)
Q Consensus 351 ~~~~~~~ 357 (381)
++++.++
T Consensus 27 iLi~~w~ 33 (39)
T 2l6w_A 27 ILIMLWQ 33 (39)
Confidence 3333333
No 173
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=43.29 E-value=15 Score=19.74 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=9.6
Q ss_pred eehhhhhHHHHHHHHhhhhhc
Q 046668 335 VSLALGFVVGFWFVMGPLFVS 355 (381)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~ 355 (381)
.+++++-+++.+++++.++++
T Consensus 10 aGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 10 AGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EeEeHHHHHHHHHHHHHHhhe
Confidence 344455544444444444443
No 174
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=41.35 E-value=7.7 Score=24.40 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=6.1
Q ss_pred hhhhhHHHHHHHH
Q 046668 337 LALGFVVGFWFVM 349 (381)
Q Consensus 337 ~~~~~~~~~~~~~ 349 (381)
+++|.++++++++
T Consensus 12 ivlGg~~~lll~~ 24 (70)
T 2klu_A 12 IVLGGVAGLLLFI 24 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH
Confidence 4555555444433
No 175
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=35.96 E-value=11 Score=21.43 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=7.2
Q ss_pred hhhHHHHHHHHhhhhhc
Q 046668 339 LGFVVGFWFVMGPLFVS 355 (381)
Q Consensus 339 ~~~~~~~~~~~~~~~~~ 355 (381)
.|+++..++++.+++.+
T Consensus 25 ~gVai~~vIVvsl~mlR 41 (43)
T 2llm_A 25 GGVVIATVIVITLVMLK 41 (43)
Confidence 34444444444444443
No 176
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=25.02 E-value=31 Score=17.28 Aligned_cols=6 Identities=33% Similarity=0.362 Sum_probs=2.2
Q ss_pred hhhHHH
Q 046668 339 LGFVVG 344 (381)
Q Consensus 339 ~~~~~~ 344 (381)
.|.+..
T Consensus 10 aglval 15 (32)
T 2lx0_A 10 AGLVAL 15 (32)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 177
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=23.34 E-value=67 Score=20.28 Aligned_cols=11 Identities=27% Similarity=0.189 Sum_probs=5.0
Q ss_pred hhhccchhhHH
Q 046668 352 LFVSRKWRSMY 362 (381)
Q Consensus 352 ~~~~~~~~~~~ 362 (381)
++...++|.++
T Consensus 35 iilS~kcrCk~ 45 (67)
T 2jp3_A 35 LALSGKCKCRR 45 (67)
T ss_dssp HHHTTHHHHHH
T ss_pred HHHcCcccccC
Confidence 34444454443
Done!