Query 046669
Match_columns 187
No_of_seqs 131 out of 165
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:07:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m3w_A H10H24; four-helix bund 47.0 19 0.00064 21.4 2.9 24 152-175 3-26 (32)
2 2kj9_A Integrase; DNA_BRE_C su 35.3 10 0.00034 26.6 0.6 24 4-27 71-95 (118)
3 4h1z_A Enolase Q92ZS5; dehydra 28.6 12 0.00041 33.0 0.0 8 156-163 193-200 (412)
4 2ay0_A Bifunctional PUTA prote 27.5 58 0.002 21.2 3.3 22 20-41 20-41 (58)
5 2q58_A Fragment, farnesyl pyro 27.4 13 0.00045 32.6 0.0 7 61-67 19-25 (368)
6 3e7m_A Nitric oxide synthase, 25.9 21 0.00073 32.8 1.1 22 152-173 65-86 (433)
7 3n5w_A Nitric oxide synthase; 25.0 35 0.0012 31.3 2.4 22 152-173 55-76 (422)
8 1d0c_A Bovine endothelial nitr 24.3 37 0.0013 31.3 2.4 22 153-174 85-106 (444)
9 2kj8_A Putative prophage CPS-5 23.2 46 0.0016 22.7 2.3 22 5-26 67-89 (118)
10 3pm7_A Uncharacterized protein 22.4 24 0.00082 25.4 0.6 20 24-43 52-75 (80)
11 2fki_A Protein YJBR; NESG, GFT 20.7 77 0.0026 23.4 3.2 33 9-43 89-121 (126)
12 2g3y_A GTP-binding protein GEM 20.5 21 0.00073 28.0 0.0 9 65-73 20-28 (211)
13 2joi_A Hypothetical protein TA 20.2 25 0.00086 27.0 0.4 14 61-74 22-35 (118)
No 1
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=47.01 E-value=19 Score=21.43 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=19.5
Q ss_pred cchhhHHHHHHHHHHHHHHhhhHH
Q 046669 152 DCHVDKEAEEFIKKFYQQLRLQKW 175 (187)
Q Consensus 152 ~~~vD~~Ae~FI~~Fy~qlr~Q~~ 175 (187)
..+|=+--|||+++|-+-|+|...
T Consensus 3 ggeiwklheeflkkfeellklhee 26 (32)
T 1m3w_A 3 GGEIWKLHEEFLKKFEELLKLHEE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999988653
No 2
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=35.28 E-value=10 Score=26.56 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=18.7
Q ss_pred CchhHHHHHHHHHHHHHHHH-HcCc
Q 046669 4 RPPVIAKKLGRMVRVILFMI-QKGI 27 (187)
Q Consensus 4 ~~p~iakRlW~~vR~~~fml-RKGi 27 (187)
..|..++++..+||.+|=++ +.|+
T Consensus 71 ~~~~t~~~~~~~L~~if~~Av~~g~ 95 (118)
T 2kj9_A 71 GYLEIAMRVKQYATAIMRYAVQQKM 95 (118)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35778999999999888764 5673
No 3
>4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A
Probab=28.60 E-value=12 Score=32.97 Aligned_cols=8 Identities=13% Similarity=0.094 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 046669 156 DKEAEEFI 163 (187)
Q Consensus 156 D~~Ae~FI 163 (187)
.+.|+++.
T Consensus 193 ~~~a~~~~ 200 (412)
T 4h1z_A 193 AELAAAWQ 200 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344333
No 4
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=27.51 E-value=58 Score=21.17 Aligned_cols=22 Identities=14% Similarity=-0.025 Sum_probs=17.1
Q ss_pred HHHHHcCcchhhhHHHHHHHHH
Q 046669 20 LFMIQKGITKSKFIGKALNDAV 41 (187)
Q Consensus 20 ~fmlRKGisKrKL~~Kal~nlm 41 (187)
-+--+.|.||..|+..||...+
T Consensus 20 ~lA~~~~rs~s~lireAi~~yl 41 (58)
T 2ay0_A 20 SAATRIDRTPHWLIKQAIFSYL 41 (58)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHH
Confidence 3345889999999999987665
No 5
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=27.42 E-value=13 Score=32.59 Aligned_cols=7 Identities=29% Similarity=0.819 Sum_probs=1.5
Q ss_pred CCceeee
Q 046669 61 CPREYEF 67 (187)
Q Consensus 61 ~~~EYEF 67 (187)
...|||+
T Consensus 19 ~~~~~~~ 25 (368)
T 2q58_A 19 FQGEYDY 25 (368)
T ss_dssp ----CCC
T ss_pred ccccchH
Confidence 4555554
No 6
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin, oxido calmodulin-binding, FAD, FMN, iron, metal-binding, NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A* 3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A* 3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A* 1m8h_A* 1m8i_A* 1m9t_A* ...
Probab=25.85 E-value=21 Score=32.81 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=18.6
Q ss_pred cchhhHHHHHHHHHHHHHHhhh
Q 046669 152 DCHVDKEAEEFIKKFYQQLRLQ 173 (187)
Q Consensus 152 ~~~vD~~Ae~FI~~Fy~qlr~Q 173 (187)
-+++-.+|++||+.||..++.+
T Consensus 65 ~e~l~~eA~~Fi~q~y~e~~~~ 86 (433)
T 3e7m_A 65 LEELLPHAIEFINQYYGSFKEA 86 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 3569999999999999887654
No 7
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn oxidoreductase, oxidoreductase-oxidoreductase inhibitor COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} SCOP: d.174.1.1 PDB: 2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A* 3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A* 3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Probab=25.04 E-value=35 Score=31.27 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.2
Q ss_pred cchhhHHHHHHHHHHHHHHhhh
Q 046669 152 DCHVDKEAEEFIKKFYQQLRLQ 173 (187)
Q Consensus 152 ~~~vD~~Ae~FI~~Fy~qlr~Q 173 (187)
-++|-.+|++||+.+|..++.+
T Consensus 55 ~e~ll~eA~~Fi~q~y~e~~~~ 76 (422)
T 3n5w_A 55 KDQLFPLAKEFLDQYYSSIKRF 76 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 3579999999999999999865
No 8
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold, oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP: d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A* 1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A* 1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A* 1nse_A* ...
Probab=24.35 E-value=37 Score=31.33 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=18.7
Q ss_pred chhhHHHHHHHHHHHHHHhhhH
Q 046669 153 CHVDKEAEEFIKKFYQQLRLQK 174 (187)
Q Consensus 153 ~~vD~~Ae~FI~~Fy~qlr~Q~ 174 (187)
++|-.+|++||+.||..++.+.
T Consensus 85 ~~l~~eA~~Fi~~~y~e~~~~~ 106 (444)
T 1d0c_A 85 EQLLSQARDFINQYYSSIKRSG 106 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 5688999999999999986643
No 9
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=23.22 E-value=46 Score=22.74 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHHHHHHH-HcC
Q 046669 5 PPVIAKKLGRMVRVILFMI-QKG 26 (187)
Q Consensus 5 ~p~iakRlW~~vR~~~fml-RKG 26 (187)
.|..++++..+||.+|-++ +.|
T Consensus 67 s~~t~~~~~~~l~~~~~~Av~~~ 89 (118)
T 2kj8_A 67 AMERANKARRRCGEVFRYAIVTG 89 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC
Confidence 6778999999999988765 556
No 10
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=22.43 E-value=24 Score=25.44 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=9.4
Q ss_pred HcCc--chhhh--HHHHHHHHHhh
Q 046669 24 QKGI--TKSKF--IGKALNDAVLY 43 (187)
Q Consensus 24 RKGi--sKrKL--~~Kal~nlm~h 43 (187)
-||| ++--+ +.++|+.++-|
T Consensus 52 gKGITLT~eE~~~Lk~~L~~~~~~ 75 (80)
T 3pm7_A 52 GKGITLTNEEFAELSKTIKSMLEH 75 (80)
T ss_dssp EEEEEECHHHHHHHHHHHHHTCC-
T ss_pred cCcceeCHHHHHHHHHHHHHHHHh
Confidence 3664 44434 44555555545
No 11
>2fki_A Protein YJBR; NESG, GFT-alpha-beta, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: d.198.3.1
Probab=20.71 E-value=77 Score=23.37 Aligned_cols=33 Identities=12% Similarity=-0.022 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHhh
Q 046669 9 AKKLGRMVRVILFMIQKGITKSKFIGKALNDAVLY 43 (187)
Q Consensus 9 akRlW~~vR~~~fmlRKGisKrKL~~Kal~nlm~h 43 (187)
..-|..+|.-++-...++++|+.. +.|....-|
T Consensus 89 ~~~l~~lI~~Sy~lv~~~lpKk~~--~~l~~~~~~ 121 (126)
T 2fki_A 89 DSQIYYLVDASYQQAVNLLPEEKR--KLLVQLLEH 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHH--HHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHH--HHhhccccc
Confidence 345666777777777777776543 344433335
No 12
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=20.50 E-value=21 Score=28.03 Aligned_cols=9 Identities=11% Similarity=0.254 Sum_probs=0.0
Q ss_pred eeecCCCCC
Q 046669 65 YEFSCSNSP 73 (187)
Q Consensus 65 YEFSCSnTP 73 (187)
++..+|.++
T Consensus 20 ~~~~~~~~~ 28 (211)
T 2g3y_A 20 FQSMSTDSV 28 (211)
T ss_dssp ---------
T ss_pred ccccccCCC
Confidence 444444433
No 13
>2joi_A Hypothetical protein TA0095; structural genomics, COG4004 orthologous group, structural genomics consortium, SGC, unknown function; NMR {Thermoplasma acidophilum}
Probab=20.23 E-value=25 Score=27.02 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=7.8
Q ss_pred CCceeeecCCCCCC
Q 046669 61 CPREYEFSCSNSPA 74 (187)
Q Consensus 61 ~~~EYEFSCSnTP~ 74 (187)
.-+||+|==--+|.
T Consensus 22 ~MqeY~~KRG~k~~ 35 (118)
T 2joi_A 22 HMREYPVKKGFPTD 35 (118)
T ss_dssp -CEEECCCSSSCCS
T ss_pred hhhccccccCCCCc
Confidence 67899864444443
Done!