BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046670
         (153 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
           Flavocytochrome C3 Fumarate Reductase
 pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
           Flavocytochrome C3 Fumarate Reductase
          Length = 566

 Score = 26.9 bits (58), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 97  AYGAAVI-VGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSK 141
           A+G A + + +T SPY   K+   I H+M    +   A  +DL SK
Sbjct: 474 AFGRADMPLNMTQSPYYAVKVAPGIHHTMGGVAINTTASVLDLQSK 519


>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
          Length = 348

 Score = 26.6 bits (57), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 21/141 (14%)

Query: 18  LLLQFAYFIHIQKYVLGRPIAIT----RTLMFAVAIKCCFCFVISVLKDIPDEDGDREFG 73
           LL+  A  + + + ++G    I     R     +A       V S+L D   +D D   G
Sbjct: 59  LLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRG 118

Query: 74  IRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWH-- 131
           + +L+V++G +  +    ++L  A GA            L+ L      ++LAT + H  
Sbjct: 119 VGSLNVVMGNKMSVLAGDFLLSRACGA------------LAALKNTEVVALLATAVEHLV 166

Query: 132 QAQTVDLSSKAS---TLSFYM 149
             +T++++S  +   ++ +YM
Sbjct: 167 TGETMEITSSTAARYSMDYYM 187


>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
           Pyrophosphate Synthase
 pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
           Pyrophosphate Synthase
          Length = 348

 Score = 26.2 bits (56), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 21/141 (14%)

Query: 18  LLLQFAYFIHIQKYVLGRPIAIT----RTLMFAVAIKCCFCFVISVLKDIPDEDGDREFG 73
           LL+  A  + + + ++G    I     R     +A       V S+L D   +D D   G
Sbjct: 59  LLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRG 118

Query: 74  IRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWH-- 131
           + +L+V++G +  +    ++L  A GA            L+ L      ++LAT + H  
Sbjct: 119 VGSLNVVMGNKMSVLAGDFLLSRACGA------------LAALKNTEVVALLATAVEHLV 166

Query: 132 QAQTVDLSSKAS---TLSFYM 149
             +T++++S      ++ +YM
Sbjct: 167 TGETMEITSSTEQRYSMDYYM 187


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.141    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,688,343
Number of Sequences: 62578
Number of extensions: 117651
Number of successful extensions: 269
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 3
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.7 bits)