Query 046670
Match_columns 153
No_of_seqs 166 out of 327
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:18:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 4.6E-52 1E-56 352.3 17.0 152 1-153 116-267 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 2.1E-40 4.5E-45 282.3 17.2 151 1-153 143-293 (308)
3 COG0382 UbiA 4-hydroxybenzoate 99.6 5.6E-14 1.2E-18 117.9 14.4 138 1-150 135-272 (289)
4 PRK12872 ubiA prenyltransferas 99.6 5.1E-14 1.1E-18 116.8 14.0 101 1-108 128-228 (285)
5 PLN02809 4-hydroxybenzoate non 99.4 5E-12 1.1E-16 107.4 14.3 134 1-147 133-267 (289)
6 TIGR01475 ubiA_other putative 99.4 7.5E-12 1.6E-16 104.7 14.5 97 46-146 163-259 (282)
7 PRK12882 ubiA prenyltransferas 99.4 9.9E-12 2.2E-16 103.5 15.0 138 1-149 125-262 (276)
8 PRK13105 ubiA prenyltransferas 99.4 6.5E-12 1.4E-16 106.8 13.4 67 39-105 158-224 (282)
9 PRK13591 ubiA prenyltransferas 99.4 3.5E-12 7.7E-17 110.1 11.7 92 49-141 187-278 (307)
10 PRK13595 ubiA prenyltransferas 99.4 9.5E-12 2.1E-16 106.7 13.2 86 1-98 141-226 (292)
11 PRK12884 ubiA prenyltransferas 99.4 3.1E-11 6.6E-16 100.3 15.1 96 1-105 124-219 (279)
12 PRK13106 ubiA prenyltransferas 99.3 2.1E-11 4.6E-16 104.3 13.4 140 2-152 138-282 (300)
13 PF01040 UbiA: UbiA prenyltran 99.3 2.9E-11 6.3E-16 96.7 13.3 79 2-88 115-193 (257)
14 PRK12392 bacteriochlorophyll c 99.3 3.3E-11 7E-16 104.4 14.3 70 39-108 178-247 (331)
15 PRK09573 (S)-2,3-di-O-geranylg 99.3 6.6E-11 1.4E-15 98.9 14.7 90 1-100 124-213 (279)
16 PRK12895 ubiA prenyltransferas 99.2 2.8E-10 6.1E-15 97.0 14.3 101 43-148 161-262 (286)
17 PRK06080 1,4-dihydroxy-2-napht 99.2 3E-10 6.6E-15 95.1 14.3 70 39-108 166-235 (293)
18 TIGR01476 chlor_syn_BchG bacte 99.2 3E-10 6.5E-15 95.0 14.2 66 39-104 159-224 (283)
19 TIGR02056 ChlG chlorophyll syn 99.2 6.2E-10 1.3E-14 94.9 15.0 66 38-103 180-245 (306)
20 PRK12847 ubiA 4-hydroxybenzoat 99.2 7.4E-10 1.6E-14 93.0 14.8 104 39-147 163-266 (285)
21 PLN00012 chlorophyll synthetas 99.2 5.7E-10 1.2E-14 98.3 14.6 65 38-102 249-313 (375)
22 PRK07566 bacteriochlorophyll/c 99.1 7.3E-10 1.6E-14 94.7 12.5 65 38-102 186-250 (314)
23 PRK05951 ubiA prenyltransferas 99.1 2.5E-09 5.5E-14 90.7 14.4 104 45-150 175-278 (296)
24 PRK12888 ubiA prenyltransferas 99.1 2.2E-09 4.8E-14 90.9 13.6 105 40-148 158-263 (284)
25 PRK12883 ubiA prenyltransferas 99.1 3.6E-09 7.8E-14 88.2 13.5 83 2-94 125-207 (277)
26 TIGR01474 ubiA_proteo 4-hydrox 99.0 1.4E-08 3E-13 85.5 14.8 105 39-148 158-262 (281)
27 PRK12870 ubiA 4-hydroxybenzoat 99.0 4.9E-09 1.1E-13 88.9 11.0 104 40-148 165-270 (290)
28 PRK12876 ubiA prenyltransferas 99.0 2.7E-08 5.8E-13 85.7 15.5 100 47-149 178-279 (300)
29 PRK12886 ubiA prenyltransferas 98.9 2E-08 4.2E-13 85.4 13.4 92 51-146 172-264 (291)
30 PRK12875 ubiA prenyltransferas 98.9 1.2E-08 2.7E-13 86.6 10.1 65 39-105 165-229 (282)
31 PRK12848 ubiA 4-hydroxybenzoat 98.9 7.4E-08 1.6E-12 81.0 13.4 91 54-149 175-266 (282)
32 PRK12871 ubiA prenyltransferas 98.8 3.2E-08 7E-13 84.5 10.9 99 41-144 175-273 (297)
33 PRK12874 ubiA prenyltransferas 98.8 6.5E-08 1.4E-12 82.3 12.3 101 43-147 169-269 (291)
34 PRK13592 ubiA prenyltransferas 98.8 8.2E-09 1.8E-13 89.1 6.1 95 2-99 134-231 (299)
35 TIGR02235 menA_cyano-plnt 1,4- 98.8 9E-08 2E-12 81.4 12.1 92 9-107 136-227 (285)
36 PRK13387 1,4-dihydroxy-2-napht 98.7 1.3E-07 2.9E-12 81.3 11.7 61 46-106 194-254 (317)
37 TIGR00751 menA 1,4-dihydroxy-2 98.7 1.7E-07 3.7E-12 79.6 12.2 69 38-106 161-229 (284)
38 PRK07419 1,4-dihydroxy-2-napht 98.7 1.6E-07 3.4E-12 80.8 12.0 93 9-108 149-241 (304)
39 PRK12878 ubiA 4-hydroxybenzoat 98.7 1.9E-07 4.2E-12 80.2 12.2 96 49-149 200-295 (314)
40 PLN02922 prenyltransferase 98.6 1.9E-06 4.2E-11 74.3 14.0 70 39-108 186-255 (315)
41 PRK12873 ubiA prenyltransferas 98.5 2.2E-06 4.8E-11 73.6 12.8 100 48-152 177-279 (294)
42 TIGR01473 cyoE_ctaB protoheme 98.3 2.7E-05 5.9E-10 65.2 14.2 85 62-149 179-265 (280)
43 PRK12869 ubiA protoheme IX far 98.3 2.8E-05 6E-10 65.5 14.1 35 62-96 180-214 (279)
44 PRK04375 protoheme IX farnesyl 98.1 7.3E-05 1.6E-09 63.4 12.8 36 60-98 189-224 (296)
45 COG1575 MenA 1,4-dihydroxy-2-n 97.7 0.00086 1.9E-08 58.4 12.9 72 36-107 171-242 (303)
46 PRK13362 protoheme IX farnesyl 97.5 0.0068 1.5E-07 52.2 14.6 36 56-91 185-220 (306)
47 KOG4581 Predicted membrane pro 85.0 0.99 2.2E-05 39.1 3.4 50 60-109 248-297 (359)
48 TIGR02056 ChlG chlorophyll syn 84.6 8 0.00017 33.1 8.8 49 46-95 59-110 (306)
49 COG0382 UbiA 4-hydroxybenzoate 79.4 26 0.00055 29.4 9.9 41 42-82 48-89 (289)
50 KOG1381 Para-hydroxybenzoate-p 79.3 3.6 7.7E-05 36.4 4.7 81 62-147 245-325 (353)
51 PRK12884 ubiA prenyltransferas 78.8 8.3 0.00018 32.0 6.6 48 47-95 43-93 (279)
52 PLN02776 prenyltransferase 77.5 52 0.0011 29.2 15.0 75 68-146 178-254 (341)
53 TIGR01476 chlor_syn_BchG bacte 75.0 12 0.00025 31.3 6.6 42 50-92 47-91 (283)
54 PRK09573 (S)-2,3-di-O-geranylg 72.7 17 0.00036 30.4 7.0 46 49-95 45-93 (279)
55 PRK12887 ubiA tocopherol phyty 71.5 28 0.0006 30.0 8.2 32 50-82 58-93 (308)
56 PRK13595 ubiA prenyltransferas 70.5 50 0.0011 28.7 9.5 54 41-95 47-103 (292)
57 PLN00012 chlorophyll synthetas 70.1 64 0.0014 28.8 10.4 38 50-88 132-172 (375)
58 PRK12882 ubiA prenyltransferas 68.6 17 0.00038 30.2 6.2 45 50-95 47-94 (276)
59 PRK12872 ubiA prenyltransferas 64.4 81 0.0017 26.0 9.9 28 46-73 41-68 (285)
60 PRK12324 phosphoribose diphosp 61.0 26 0.00057 30.2 6.0 45 51-95 56-104 (295)
61 TIGR01475 ubiA_other putative 60.0 26 0.00056 29.3 5.7 45 47-91 42-90 (282)
62 PRK07566 bacteriochlorophyll/c 59.9 30 0.00066 29.6 6.2 42 53-95 77-121 (314)
63 PF01040 UbiA: UbiA prenyltran 57.9 92 0.002 24.6 9.7 33 51-83 33-66 (257)
64 PRK12883 ubiA prenyltransferas 56.6 43 0.00093 27.8 6.4 39 54-93 50-91 (277)
65 PRK13591 ubiA prenyltransferas 55.6 1.1E+02 0.0024 26.8 9.0 42 26-72 48-89 (307)
66 PRK13592 ubiA prenyltransferas 54.1 29 0.00063 30.4 5.1 67 27-93 30-100 (299)
67 PRK12888 ubiA prenyltransferas 53.2 1.4E+02 0.0031 25.3 9.3 43 48-90 46-92 (284)
68 TIGR01473 cyoE_ctaB protoheme 52.9 1.3E+02 0.0029 25.0 9.7 48 47-94 41-92 (280)
69 PRK12869 ubiA protoheme IX far 52.8 59 0.0013 27.3 6.7 47 47-93 42-92 (279)
70 PRK08238 hypothetical protein; 49.5 24 0.00052 32.4 4.1 35 39-74 343-377 (479)
71 PRK12875 ubiA prenyltransferas 49.0 1.7E+02 0.0037 25.0 11.0 22 55-76 55-80 (282)
72 TIGR02908 CoxD_Bacillus cytoch 47.5 53 0.0011 24.9 5.0 46 7-56 57-102 (110)
73 PRK05951 ubiA prenyltransferas 46.2 1.8E+02 0.004 24.6 9.2 49 49-97 48-103 (296)
74 PF06645 SPC12: Microsomal sig 45.3 1E+02 0.0022 21.4 6.1 28 82-109 5-32 (76)
75 PRK12847 ubiA 4-hydroxybenzoat 44.5 1.3E+02 0.0028 25.2 7.5 44 51-94 55-102 (285)
76 PRK13106 ubiA prenyltransferas 43.0 1.1E+02 0.0024 26.4 6.9 24 49-72 57-80 (300)
77 PRK12392 bacteriochlorophyll c 40.2 2.5E+02 0.0055 24.5 10.3 38 58-96 67-107 (331)
78 TIGR00751 menA 1,4-dihydroxy-2 39.9 2.4E+02 0.0051 24.0 9.8 56 49-104 36-97 (284)
79 PLN02878 homogentisate phytylt 39.5 2.1E+02 0.0045 24.9 8.1 22 60-82 42-63 (280)
80 TIGR02847 CyoD cytochrome o ub 39.5 1.5E+02 0.0032 21.8 6.2 46 6-54 35-80 (96)
81 TIGR01474 ubiA_proteo 4-hydrox 39.4 1.1E+02 0.0024 25.7 6.3 43 51-93 50-96 (281)
82 PRK07419 1,4-dihydroxy-2-napht 36.5 2.5E+02 0.0054 24.2 8.2 53 48-102 55-111 (304)
83 PRK08238 hypothetical protein; 36.4 1.1E+02 0.0024 28.1 6.3 45 51-95 236-284 (479)
84 PLN02809 4-hydroxybenzoate non 34.9 1.4E+02 0.003 25.5 6.3 41 51-91 55-99 (289)
85 PRK10582 cytochrome o ubiquino 34.1 1.8E+02 0.0039 21.8 6.1 25 6-30 46-70 (109)
86 PRK10133 L-fucose transporter; 33.8 3.2E+02 0.007 23.8 8.6 76 77-152 84-162 (438)
87 cd00867 Trans_IPPS Trans-Isopr 32.5 1.9E+02 0.0041 22.7 6.4 31 59-89 164-204 (236)
88 COG1575 MenA 1,4-dihydroxy-2-n 31.9 2.5E+02 0.0053 24.8 7.4 69 36-107 40-114 (303)
89 TIGR02901 QoxD cytochrome aa3 31.2 1.7E+02 0.0036 21.4 5.3 46 7-55 38-83 (94)
90 PRK10581 geranyltranstransfera 29.7 50 0.0011 28.3 2.8 43 53-95 213-268 (299)
91 PRK10581 geranyltranstransfera 28.2 1.8E+02 0.0039 24.9 5.9 42 60-101 83-125 (299)
92 PRK12870 ubiA 4-hydroxybenzoat 26.4 4E+02 0.0087 22.6 7.7 22 50-71 55-76 (290)
93 TIGR02332 HpaX 4-hydroxyphenyl 26.1 3E+02 0.0066 23.5 7.0 25 77-101 66-90 (412)
94 PRK12886 ubiA prenyltransferas 26.1 2.3E+02 0.0049 24.1 6.1 37 52-89 53-94 (291)
95 PRK12876 ubiA prenyltransferas 25.9 2.7E+02 0.0059 24.2 6.6 47 45-91 51-101 (300)
96 PRK13387 1,4-dihydroxy-2-napht 25.5 4.4E+02 0.0095 22.7 8.7 47 53-99 51-103 (317)
97 TIGR03733 lanti_perm_MutG lant 25.3 3.7E+02 0.008 21.8 7.2 40 51-91 58-97 (248)
98 PRK09705 cynX putative cyanate 25.1 3.2E+02 0.0069 23.1 6.9 45 80-125 70-114 (393)
99 COG2704 DcuB Anaerobic C4-dica 24.6 99 0.0022 28.5 3.8 113 4-129 145-270 (436)
100 PF13260 DUF4051: Protein of u 24.4 78 0.0017 21.0 2.3 14 18-31 12-25 (54)
101 PRK10473 multidrug efflux syst 24.4 3E+02 0.0066 22.8 6.5 20 80-99 64-83 (392)
102 PRK13362 protoheme IX farnesyl 24.3 4.6E+02 0.01 22.5 7.9 45 49-93 55-103 (306)
103 COG3125 CyoD Heme/copper-type 23.9 3.3E+02 0.0071 20.7 6.2 48 8-58 50-97 (111)
104 TIGR00899 2A0120 sugar efflux 23.4 4E+02 0.0086 21.5 8.0 14 80-93 261-274 (375)
105 PRK12895 ubiA prenyltransferas 22.5 3.4E+02 0.0073 23.3 6.5 45 50-94 46-94 (286)
106 TIGR00880 2_A_01_02 Multidrug 22.3 2.4E+02 0.0052 18.6 7.3 19 80-98 24-42 (141)
107 PRK06099 F0F1 ATP synthase sub 22.1 3.7E+02 0.0079 20.6 8.7 11 139-149 65-75 (126)
108 PRK12871 ubiA prenyltransferas 22.0 5.1E+02 0.011 22.2 8.4 42 53-95 54-108 (297)
109 PF15184 TOMM6: Mitochondrial 21.5 67 0.0014 22.2 1.6 16 15-30 34-49 (66)
110 COG2246 Predicted membrane pro 20.5 3.9E+02 0.0085 20.3 7.6 33 8-41 14-46 (139)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=4.6e-52 Score=352.25 Aligned_cols=152 Identities=53% Similarity=0.989 Sum_probs=150.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670 1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI 80 (153)
Q Consensus 1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~ 80 (153)
|||+|++|++||++|||+++|+|+|+|||++++|+|..+|+++++.++|+++|+.+++++||+||+||||++|++|+|++
T Consensus 116 ~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~ 195 (280)
T PLN02878 116 WKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVR 195 (280)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCcCchhHHHCCCceechh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHhhcC
Q 046670 81 LGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153 (153)
Q Consensus 81 lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~si~sfY~fIWk 153 (153)
+|+|+++++|..++.++|++++.+|++++ ..+++++|+.||++++.+||+|++++|++||++++||||||||
T Consensus 196 lG~~~~~~i~~~ll~~aY~~~i~~g~~~~-~~~~~~~~~~~h~~l~~~L~~rs~~vD~~sk~~i~~fY~fiwk 267 (280)
T PLN02878 196 LGQKRVFWLCVNLLEMAYAAAILVGASSS-FLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIWK 267 (280)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhHhcCcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 8999999999999999999999999999999999999999998
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=2.1e-40 Score=282.28 Aligned_cols=151 Identities=37% Similarity=0.651 Sum_probs=146.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670 1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI 80 (153)
Q Consensus 1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~ 80 (153)
+||+|+++++||+++||+++|+|+|+|++.. .+++..+|++++++++++.+++++++++||+||+||||+.|+||+|++
T Consensus 143 lKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~ 221 (308)
T PRK12887 143 LKRFPLLAALCIFTVRGVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLR 221 (308)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHH
Confidence 6999999999999999999999999999875 677788999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHhhcC
Q 046670 81 LGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIWK 153 (153)
Q Consensus 81 lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~si~sfY~fIWk 153 (153)
+|+|++.+++..++.++|+.+++.|+... ..+++.+++.||++++..+|+|++++|++||+||+||||||||
T Consensus 222 lG~~~a~~l~~~ll~~~y~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~ 293 (308)
T PRK12887 222 LGKQAVFKLSCWVLTACYLGMIAVGLLSL-PTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWK 293 (308)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 99999999999999999999999999998 8899999999999999999999999999999999999999998
No 3
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.58 E-value=5.6e-14 Score=117.87 Aligned_cols=138 Identities=24% Similarity=0.322 Sum_probs=113.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670 1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI 80 (153)
Q Consensus 1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~ 80 (153)
.||++.+...|+-.+.+.....|.... .|. .+++.+++..+..+.+.+.+++||+||+||||+.|++|+|+.
T Consensus 135 ~Kr~~~~~~~~lg~~~~~~~~~g~~a~-----~~~---~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~ 206 (289)
T COG0382 135 LKRFTFLPQLVLGLAFGLGALAGAAAV-----GGS---LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVL 206 (289)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHH-----hCc---cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHH
Confidence 599999999999999999998888532 121 668888999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHh
Q 046670 81 LGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMF 150 (153)
Q Consensus 81 lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~si~sfY~f 150 (153)
+|+|++.+++.... .++.....++.... ........++...+..+++|...+|.+++++...++..
T Consensus 207 ~G~~~a~~l~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (289)
T COG0382 207 FGIKKALALALLLL-LASALLVLLGLLAG---LLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDV 272 (289)
T ss_pred hCchhHHHHHHHHH-HHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 99999999998887 45555554554432 12257888888889999999999998888777776654
No 4
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.58 E-value=5.1e-14 Score=116.81 Aligned_cols=101 Identities=24% Similarity=0.272 Sum_probs=84.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670 1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI 80 (153)
Q Consensus 1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~ 80 (153)
.||.|.+..+++..+.|....++-+++.+. .++...+....++.+..+..+++||+||+||||+.|++|+|++
T Consensus 128 lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~ 200 (285)
T PRK12872 128 LKRIPLFKNLVVSLLWALSPLILGVYYYQL-------TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIV 200 (285)
T ss_pred HhhhhhHhhHHHHHHHHHHHHHHHHHhccc-------ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchh
Confidence 388999999999999998877765544221 2456666777888888999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046670 81 LGKESVLWLCVYVLVIAYGAAVIVGLTS 108 (153)
Q Consensus 81 lG~~~~~~i~~~ll~~~y~~ai~~g~~~ 108 (153)
+|+|++.+++..+....|+..+......
T Consensus 201 lG~~~t~~~~~~~~~~~~~~~~~~~~~~ 228 (285)
T PRK12872 201 LGKERTLKFLLILNLLFLILLILGVYTG 228 (285)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998888887655443
No 5
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.42 E-value=5e-12 Score=107.43 Aligned_cols=134 Identities=23% Similarity=0.315 Sum_probs=95.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHH-HHHHHHHHHHHHHHHccCCCchhhhhcCCccchh
Q 046670 1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMF-AVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSV 79 (153)
Q Consensus 1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f-~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i 79 (153)
+||+..+..+ +.|+..+++...+... +-|.. ++..+. +.....+-+.+-..+.+.+|+|+||+.|++|+|+
T Consensus 133 ~KR~t~~~~~----~lg~~~~~~~l~g~~a-v~g~~---~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v 204 (289)
T PLN02809 133 MKRFTFWPQA----FLGLTFNWGALLGWAA-VKGSL---DPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTAL 204 (289)
T ss_pred HHhcCcchHH----HHHHHHHHHHHHHHHH-HhCCC---ChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccch
Confidence 4788776664 5788888988877654 34432 222221 2222222255566788889999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHH
Q 046670 80 ILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSF 147 (153)
Q Consensus 80 ~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~si~sf 147 (153)
++|+|+..+++. +...+|+....+|.... .+...+ .+|++.+..+++|.+.+|++|++++.+.
T Consensus 205 ~~G~~~~~~i~~-~~~~~~~~l~~~g~~~~---~~~~~~-~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 267 (289)
T PLN02809 205 RFGDDTKLWLTG-FGAASIGGLALSGYNAG---LGWPYY-AGLAAAAGHLAWQIQTVDLSSRADCNRK 267 (289)
T ss_pred hhcHHHHHHHHH-HHHHHHHHHHHHHHHhc---CcHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999998888875 56667777766776543 233444 5899999999999999999999877554
No 6
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.41 E-value=7.5e-12 Score=104.68 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH
Q 046670 46 AVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSML 125 (153)
Q Consensus 46 ~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il 125 (153)
+.....+......++||.||+|||++.|++|+|+++|+|++.++......+.++..+..+.... . ......+..+.
T Consensus 163 l~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~-~---g~~y~~~~~~~ 238 (282)
T TIGR01475 163 LGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVG-N---GYIALLALILI 238 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhh-C---cHHHHHHHHHH
Confidence 3344455566778899999999999999999999999999999988888888877777666543 2 34445566666
Q ss_pred HHHHHHHHhhccCCChhhHHH
Q 046670 126 ATLLWHQAQTVDLSSKASTLS 146 (153)
Q Consensus 126 ~~~Lw~r~~~vdl~sk~si~s 146 (153)
...++++.+.+|.+|+++..+
T Consensus 239 ~~~l~~~~~~~~~~~~~~~~~ 259 (282)
T TIGR01475 239 GLILAYEHYIVDPGDQSKIQR 259 (282)
T ss_pred HHHHHHHHHHcCCCCHHHHHH
Confidence 777888999999998887765
No 7
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.41 E-value=9.9e-12 Score=103.53 Aligned_cols=138 Identities=17% Similarity=0.220 Sum_probs=84.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670 1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI 80 (153)
Q Consensus 1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~ 80 (153)
.||+|.+...++....|....+|.. +.+... +.+.+.+..+..+..+..+++||+||+|||++.|++|+|++
T Consensus 125 lK~~~~~g~~~vg~~~g~~~~~g~~------~~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~ 196 (276)
T PRK12882 125 LKGTPGLGNASVAYLTGSTFLFGGA------AVGTEG--LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPIL 196 (276)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHH------Hhcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHH
Confidence 3888988888887777776555642 123211 12222233333445678899999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHH
Q 046670 81 LGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYM 149 (153)
Q Consensus 81 lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~si~sfY~ 149 (153)
+|+|++.+++........+.... +... ...+...+...-...+..++...+.+|.+++++..+++.
T Consensus 197 ~G~~~t~~~~~~~~~~~~~~~~~-~~~~--~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~ 262 (276)
T PRK12882 197 IGVRKALYVAAAFLLVAVAASPL-PYLL--STFGLWYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLK 262 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999877666544433322 1110 111222222222222444555667777777766655443
No 8
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.39 E-value=6.5e-12 Score=106.83 Aligned_cols=67 Identities=21% Similarity=0.243 Sum_probs=60.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 046670 39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVG 105 (153)
Q Consensus 39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g 105 (153)
++++.+.....+.+++.+++++||+||+||||+.|.||+|+++|+|++.+++..+..++++..+..+
T Consensus 158 ~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 158 FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888999999999999999999999999999999999999999999998888777444
No 9
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.39 E-value=3.5e-12 Score=110.06 Aligned_cols=92 Identities=17% Similarity=0.130 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Q 046670 49 IKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATL 128 (153)
Q Consensus 49 f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~ 128 (153)
+.....++++++||++|+|||++.|.+|+|+++|++++.++...+..+.|+..++..+... ..+...+.+-+-.+-+..
T Consensus 187 ~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~-l~~~~~~~~~s~~~~l~~ 265 (307)
T PRK13591 187 FFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGV-IAFEPIILLYSFVCGLIC 265 (307)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCchhhHHHHHHHHHH
Confidence 3334447888999999999999999999999999999999999999999888776665543 334455555555555667
Q ss_pred HHHHHhhccCCCh
Q 046670 129 LWHQAQTVDLSSK 141 (153)
Q Consensus 129 Lw~r~~~vdl~sk 141 (153)
+|+-+++.|-+++
T Consensus 266 ~~~~~~~~~~~~~ 278 (307)
T PRK13591 266 IQVYSSPFENEPS 278 (307)
T ss_pred HHHHcCCcccCcH
Confidence 7777777766544
No 10
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.37 E-value=9.5e-12 Score=106.72 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=62.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670 1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI 80 (153)
Q Consensus 1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~ 80 (153)
.|+.|++.++|... +|.-.+....+.|.+. +..+ .....+++.+.+++||+||+||||+.|+||+|++
T Consensus 141 lK~rp~l~~l~~~~-------~g~p~~~~~~~~g~~~--~~~~---l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~ 208 (292)
T PRK13595 141 FKARPFLDGLSNAA-------YALPLALPALALGAPV--PWPP---LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATT 208 (292)
T ss_pred hhcCcchhHHHHHH-------HHHHHHHHHHHcCCcc--hHHH---HHHHHHHHHHHHHHHhccChHhHHHcCCeechHH
Confidence 48889998888643 2223333333445432 2222 2344577799999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHH
Q 046670 81 LGKESVLWLCVYVLVIAY 98 (153)
Q Consensus 81 lG~~~~~~i~~~ll~~~y 98 (153)
+|+|++.++|..+..++-
T Consensus 209 lG~r~a~~~a~~~~~~a~ 226 (292)
T PRK13595 209 LGVRGTALYALAWFLLAG 226 (292)
T ss_pred hCcHhHHHHHHHHHHHHH
Confidence 999999999987666443
No 11
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.36 E-value=3.1e-11 Score=100.28 Aligned_cols=96 Identities=21% Similarity=0.360 Sum_probs=72.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670 1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI 80 (153)
Q Consensus 1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~ 80 (153)
.||+|.+..+++....|.....|-+ ..+.+ +.+.+.+..++.+.....++.+|++|+|||++.|++|+|++
T Consensus 124 lK~~~~~~~~~~~~~~~~~~~~g~~------~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~ 194 (279)
T PRK12884 124 LKEYGLIGNLYVAFLTGMTFIFGGI------AVGEL---NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAIL 194 (279)
T ss_pred hccccchhHHHHHHHHHHHHHHHHH------HhCCC---chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechH
Confidence 3888888888877777765544432 12222 22555566667777788899999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHH
Q 046670 81 LGKESVLWLCVYVLVIAYGAAVIVG 105 (153)
Q Consensus 81 lG~~~~~~i~~~ll~~~y~~ai~~g 105 (153)
+|+|++.+++..+....++..++..
T Consensus 195 ~G~~~~~~~~~~~~~~~~~~~~~~~ 219 (279)
T PRK12884 195 YGEKIAGRIAAALFILAVLLSPLPY 219 (279)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888777776555433
No 12
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.34 E-value=2.1e-11 Score=104.26 Aligned_cols=140 Identities=18% Similarity=0.183 Sum_probs=94.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----cccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCcc
Q 046670 2 KRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRP-----IAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRT 76 (153)
Q Consensus 2 KR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~-----~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~T 76 (153)
||+..+.-+.+-...|..+..|... +.|.. ..++.+-+++.....+.+.+.+++||.||+|||++.|++|
T Consensus 138 KR~t~~~~~~lg~~~~~~~~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~S 212 (300)
T PRK13106 138 KRYTAFANYHLASIQGLAVFSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHS 212 (300)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCc
Confidence 7777777777766777665555532 12311 1222333344445567778899999999999999999999
Q ss_pred chhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHhhc
Q 046670 77 LSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTLSFYMFIW 152 (153)
Q Consensus 77 l~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~si~sfY~fIW 152 (153)
+|+++| +++..++..+...........|.... . ......+-.+....+.++.+.++.+ ++.-+.|.+..|
T Consensus 213 lpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~-l---g~~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~ 282 (300)
T PRK13106 213 FAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYG-L---GPIAIAATILHGLIMAYAYYLASKK-GDFGRAFYYNIY 282 (300)
T ss_pred cHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhC-C---cHHHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccH
Confidence 999999 88888888777766666666665443 1 2333344455667777888888877 666677765443
No 13
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.34 E-value=2.9e-11 Score=96.73 Aligned_cols=79 Identities=29% Similarity=0.440 Sum_probs=67.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhh
Q 046670 2 KRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVIL 81 (153)
Q Consensus 2 KR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~l 81 (153)
||+|.+..+++..+++...-+|.+. .+. ..+++.+....+..++.+.+...+|++|+|||++.|.+|+|+++
T Consensus 115 k~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~ 186 (257)
T PF01040_consen 115 KRRPLWGELVVALVFGLLILLGAYA------AGG--DPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLL 186 (257)
T ss_pred cceeccchhhHHHhhhHhhhhhhhh------cCC--cccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHH
Confidence 8999989999999999887777764 111 22677777777878888889999999999999999999999999
Q ss_pred cHHHHHH
Q 046670 82 GKESVLW 88 (153)
Q Consensus 82 G~~~~~~ 88 (153)
|++++..
T Consensus 187 G~~~~~~ 193 (257)
T PF01040_consen 187 GEKKARY 193 (257)
T ss_pred HHHHHHH
Confidence 9999998
No 14
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.34 E-value=3.3e-11 Score=104.45 Aligned_cols=70 Identities=13% Similarity=0.415 Sum_probs=59.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046670 39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTS 108 (153)
Q Consensus 39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~ 108 (153)
++.+.+.+.++..+.+.+..++||+||+|||++.|+||+|+++|+|++.+++.....+..+..+..+...
T Consensus 178 ~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~ 247 (331)
T PRK12392 178 IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSW 247 (331)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777888889999999999999999999999999999999999999888766666666566554
No 15
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.32 E-value=6.6e-11 Score=98.88 Aligned_cols=90 Identities=18% Similarity=0.284 Sum_probs=66.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh
Q 046670 1 WKRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI 80 (153)
Q Consensus 1 wKR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~ 80 (153)
+||.+.+...++..+.|...-.|-+. .+. +.+.+++..+..+.+..+++.||.||+|||++.|++|+|++
T Consensus 124 lKr~~~~~~~~vg~~~G~~~~~g~~~-~~~---------~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~ 193 (279)
T PRK09573 124 LKKTGLIGNLIVAYLTGLSFIFGGLA-VFN---------VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIK 193 (279)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHH-Hcc---------chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHH
Confidence 48888888888888888876666532 121 12233344455566778999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHH
Q 046670 81 LGKESVLWLCVYVLVIAYGA 100 (153)
Q Consensus 81 lG~~~~~~i~~~ll~~~y~~ 100 (153)
+|+|++.+++..........
T Consensus 194 ~G~~~a~~~~~~~~~~~~~~ 213 (279)
T PRK09573 194 YGIKKSWYIAKILLILAIVL 213 (279)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 99999999876655544333
No 16
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.23 E-value=2.8e-10 Score=96.98 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Q 046670 43 LMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISH 122 (153)
Q Consensus 43 v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H 122 (153)
.+.+.....+-..+-++++|.||+|+|++.|++|+|+++|+++..+++..+..++....++.|.... ......+-
T Consensus 161 ~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-----~~~y~~~~ 235 (286)
T PRK12895 161 IYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-----TLWYLAAL 235 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHH
Confidence 3445555666777788999999999999999999999999999988876666665555555554432 34445666
Q ss_pred HHHHHHHHHHHhhccCCChhhH-HHHH
Q 046670 123 SMLATLLWHQAQTVDLSSKAST-LSFY 148 (153)
Q Consensus 123 ~il~~~Lw~r~~~vdl~sk~si-~sfY 148 (153)
.+.+..+.+|.+.+|.+|++++ .+|+
T Consensus 236 ~~~~~~l~~q~~~~~~~~~~~~~~~~F 262 (286)
T PRK12895 236 IIIYTLVIYQHLIIDPRNPINKRMSFF 262 (286)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6678888899999999998887 5543
No 17
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.23 E-value=3e-10 Score=95.07 Aligned_cols=70 Identities=24% Similarity=0.313 Sum_probs=63.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046670 39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTS 108 (153)
Q Consensus 39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~ 108 (153)
++.+.++......++...+.+.||++|+||||+.|.+|+|+++|+|++.++...+..++|+..+...+..
T Consensus 166 ~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~ 235 (293)
T PRK06080 166 VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG 235 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567788888899999999999999999999999999999999999999999999999999888776654
No 18
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.23 E-value=3e-10 Score=94.97 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=56.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 046670 39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIV 104 (153)
Q Consensus 39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~ 104 (153)
++...++...-+++++..+..+||++|+||||+.|.+|+|+++|+|++.+++..++.+.|+..+..
T Consensus 159 ~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~ 224 (283)
T TIGR01476 159 LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGL 224 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677788899999999999999999999999999999999999999888888766643
No 19
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.20 E-value=6.2e-10 Score=94.86 Aligned_cols=66 Identities=24% Similarity=0.478 Sum_probs=56.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHH
Q 046670 38 AITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVI 103 (153)
Q Consensus 38 ~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~ 103 (153)
.++...+.....+.+.+.++++.||++|+|||++.|.||+|+++|+|++.+++..++...|+..+.
T Consensus 180 ~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~ 245 (306)
T TIGR02056 180 ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAA 245 (306)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777888999999999999999999999999999999999999999887776655443
No 20
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.19 E-value=7.4e-10 Score=92.97 Aligned_cols=104 Identities=9% Similarity=0.140 Sum_probs=73.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHH
Q 046670 39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVT 118 (153)
Q Consensus 39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~ 118 (153)
++.+.+++.....+-......+++++|+|+|++.|++|+|+++|+|++.+++.......|+..++.-+... .....
T Consensus 163 ~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~y 238 (285)
T PRK12847 163 LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSL----HNIFY 238 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcC----cHHHH
Confidence 44555555556667777778899999999999999999999999999999888776666655443222211 12222
Q ss_pred HHHHHHHHHHHHHHHhhccCCChhhHHHH
Q 046670 119 IISHSMLATLLWHQAQTVDLSSKASTLSF 147 (153)
Q Consensus 119 ~~~H~il~~~Lw~r~~~vdl~sk~si~sf 147 (153)
.++++.+..++++...+|.+++++..+.
T Consensus 239 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (285)
T PRK12847 239 -LAILAAAGIFYYQYKLLDFDNPANCMYA 266 (285)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2455555677888889998887655544
No 21
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.19 E-value=5.7e-10 Score=98.33 Aligned_cols=65 Identities=23% Similarity=0.466 Sum_probs=55.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 046670 38 AITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAV 102 (153)
Q Consensus 38 ~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai 102 (153)
.++...+.+.+++.+.+.+++++||++|+|||++.|++|+|+++|+|++.+++..++.+.++..+
T Consensus 249 ~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~ 313 (375)
T PLN00012 249 TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA 313 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence 35566667777888899999999999999999999999999999999999999876666655433
No 22
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.14 E-value=7.3e-10 Score=94.74 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=55.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 046670 38 AITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAV 102 (153)
Q Consensus 38 ~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai 102 (153)
.++...++...+.++.+..+..+||++|+||||+.|++|+|+++|+|++.+++..++.+.|+..+
T Consensus 186 ~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~ 250 (314)
T PRK07566 186 LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI 250 (314)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777788889999999999999999999999999999999999888888877654
No 23
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.11 E-value=2.5e-09 Score=90.65 Aligned_cols=104 Identities=20% Similarity=0.264 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Q 046670 45 FAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSM 124 (153)
Q Consensus 45 f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~i 124 (153)
....-..+....+-+.++++|+|+||+.|.+|+|+++|+|++ ++-..+...+|+..+...+... ..+.......++-.
T Consensus 175 ~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~ll~lp~ 252 (296)
T PRK05951 175 LAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAIL-TPLISLWALLSLLV 252 (296)
T ss_pred HHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHH
Confidence 333344455566677999999999999999999999999999 5555556667776665555443 22334556666666
Q ss_pred HHHHHHHHHhhccCCChhhHHHHHHh
Q 046670 125 LATLLWHQAQTVDLSSKASTLSFYMF 150 (153)
Q Consensus 125 l~~~Lw~r~~~vdl~sk~si~sfY~f 150 (153)
....+.++.+..|.++.+...+.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (296)
T PRK05951 253 AYALCLWQLRKFPPDPDEATVQLFML 278 (296)
T ss_pred HHHHHHHHHhhCcccccHHHHHHHHH
Confidence 66666667777777777777776653
No 24
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.10 E-value=2.2e-09 Score=90.95 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHH
Q 046670 40 TRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTI 119 (153)
Q Consensus 40 ~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~ 119 (153)
+.+.+++..-..+...+..+++|.+|+|+|++.|++|+|+++|+|++.+++..+..+.++.....|.... .. ....
T Consensus 158 ~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~-~~---~~y~ 233 (284)
T PRK12888 158 SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVG-FG---ALWW 233 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhC-Cc---HHHH
Confidence 3344445555556677888999999999999999999999999999998777776666666666665543 21 2222
Q ss_pred HHHHHHHHHHHHHHhhccCCChhhHH-HHH
Q 046670 120 ISHSMLATLLWHQAQTVDLSSKASTL-SFY 148 (153)
Q Consensus 120 ~~H~il~~~Lw~r~~~vdl~sk~si~-sfY 148 (153)
.+-.+.+..+.+|.+.+|.+|++.+. .|+
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff 263 (284)
T PRK12888 234 IGLAITAGAFAYEHAIVSPTDLSRVNRAFF 263 (284)
T ss_pred HHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 34446677788899999999888764 643
No 25
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.07 E-value=3.6e-09 Score=88.25 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=54.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhh
Q 046670 2 KRSSFLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVIL 81 (153)
Q Consensus 2 KR~p~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~l 81 (153)
||.+.+....+..+-|...-.|.+ + + + .++...+. ..+..+..+.+++.||++|+|||++.|++|+|+++
T Consensus 125 k~~~~lg~~~vg~~~g~~~~~g~~---a--~-~---~~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~ 194 (277)
T PRK12883 125 KPLPFIGNVVVALLTGATPIYGAI---A--V-G---RIGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIII 194 (277)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHH---H--h-c---cccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHh
Confidence 666666666666666654433332 1 1 1 11222221 23344555688899999999999999999999999
Q ss_pred cHHHHHHHHHHHH
Q 046670 82 GKESVLWLCVYVL 94 (153)
Q Consensus 82 G~~~~~~i~~~ll 94 (153)
|+|++.+++....
T Consensus 195 G~~~a~~~~~~~~ 207 (277)
T PRK12883 195 GKKRAAYIGAIFG 207 (277)
T ss_pred cHHHHHHHHHHHH
Confidence 9999988765543
No 26
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.01 E-value=1.4e-08 Score=85.51 Aligned_cols=105 Identities=17% Similarity=0.306 Sum_probs=66.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHH
Q 046670 39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVT 118 (153)
Q Consensus 39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~ 118 (153)
++.+.+.+.....+.+.+.+.+++++|+|+|++.|++|+|+++|+|+..+.+.......++.. +.+.... .+ ...
T Consensus 158 ~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~-~~y 232 (281)
T TIGR01474 158 LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLA-LAGLIAG---LG-PVY 232 (281)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHH-HHHHHhC---Cc-HHH
Confidence 344444445556666778888999999999999999999999999987655444443333332 2333221 12 222
Q ss_pred HHHHHHHHHHHHHHHhhccCCChhhHHHHH
Q 046670 119 IISHSMLATLLWHQAQTVDLSSKASTLSFY 148 (153)
Q Consensus 119 ~~~H~il~~~Lw~r~~~vdl~sk~si~sfY 148 (153)
..+-.+.+..+.++...+|.+++++..+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F 262 (281)
T TIGR01474 233 YLGLAAAALLLIRQIATLDIRDPENCLKLF 262 (281)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 233334456666667777777776655554
No 27
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=98.98 E-value=4.9e-09 Score=88.89 Aligned_cols=104 Identities=11% Similarity=0.120 Sum_probs=67.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHH
Q 046670 40 TRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTI 119 (153)
Q Consensus 40 ~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~ 119 (153)
+.+.+++.....+...+.+++++.+|+|+|++.|++|+|+++|+|+..+++.......+ .....|.... . +. ...
T Consensus 165 ~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~-~l~~~~~~~~-~--~~-~y~ 239 (290)
T PRK12870 165 DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVG-FLAILGVLLE-L--HL-PFW 239 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHH-HHHHHHHHhC-C--cH-HHH
Confidence 44555566666777888888999999999999999999999999999887774332222 2223343322 1 11 222
Q ss_pred HHHHHHHHHHHHHHhhc--cCCChhhHHHHH
Q 046670 120 ISHSMLATLLWHQAQTV--DLSSKASTLSFY 148 (153)
Q Consensus 120 ~~H~il~~~Lw~r~~~v--dl~sk~si~sfY 148 (153)
.+-.+....+.++...+ |.+++++..+|+
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F 270 (290)
T PRK12870 240 IGLAIAAVLWARQYRRLRQANLPPLAYGQLF 270 (290)
T ss_pred HHHHHHHHHHHHHHHHhcccCCChHHHHHHH
Confidence 23334455666777777 877776554443
No 28
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=98.98 E-value=2.7e-08 Score=85.74 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-
Q 046670 47 VAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSML- 125 (153)
Q Consensus 47 t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il- 125 (153)
+....+...+-.++++.+|+||||+.|++|+|+++|.+++..++..+..+..+..++.|.... .. ......+=.+.
T Consensus 178 ~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~-l~--~~~y~~~~~~~~ 254 (300)
T PRK12876 178 GISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVS-NK--KIFYLCSLVPLT 254 (300)
T ss_pred HHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhh-cc--HHHHHHHHHHHH
Confidence 333444445778899999999999999999999999999877777666666555555565543 22 12233333222
Q ss_pred -HHHHHHHHhhccCCChhhHHHHHH
Q 046670 126 -ATLLWHQAQTVDLSSKASTLSFYM 149 (153)
Q Consensus 126 -~~~Lw~r~~~vdl~sk~si~sfY~ 149 (153)
...+.++.+.+|.++++.-..|++
T Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~F~ 279 (300)
T PRK12876 255 VILKTIKHYSLIDKKKSTLEQKFFL 279 (300)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHH
Confidence 222355656666665555555443
No 29
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=98.95 E-value=2e-08 Score=85.36 Aligned_cols=92 Identities=14% Similarity=0.211 Sum_probs=61.7
Q ss_pred HHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Q 046670 51 CCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLW 130 (153)
Q Consensus 51 ~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw 130 (153)
.+-....+++++++|.|+|++.|++|+|+++|++++.+++.......+....+.+.... . ......+-.+....+.
T Consensus 172 ~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~y~~~~~~~~~~~l 247 (291)
T PRK12886 172 LFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAG-L---GPWFLAGLAVTGILLL 247 (291)
T ss_pred HHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHHHH
Confidence 33355666789999999999999999999999999999887666666665555554332 1 1223333334444444
Q ss_pred HHHhhccCCCh-hhHHH
Q 046670 131 HQAQTVDLSSK-ASTLS 146 (153)
Q Consensus 131 ~r~~~vdl~sk-~si~s 146 (153)
++.+.++.+|+ ++-.+
T Consensus 248 ~~~~~~~~~~~~~~~~~ 264 (291)
T PRK12886 248 YEHWLLRGGDLTRLDAA 264 (291)
T ss_pred HHHHHhCCCChhHHHHH
Confidence 67777877773 34444
No 30
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=98.89 E-value=1.2e-08 Score=86.62 Aligned_cols=65 Identities=26% Similarity=0.388 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 046670 39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVG 105 (153)
Q Consensus 39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g 105 (153)
+|+..++... .+.+.++.+++|++|+|+|++.|+||+|+++|+|++.+++..+...+-...+.++
T Consensus 165 ~~~~~l~~a~--~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 165 LPPLLAVAGG--WLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred CcHHHHHHHH--HHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444 4778888999999999999999999999999999999887777665544444443
No 31
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=98.85 E-value=7.4e-08 Score=81.03 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=57.8
Q ss_pred HHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH
Q 046670 54 CFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQA 133 (153)
Q Consensus 54 ~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~ 133 (153)
........+++|.|+|++.|++|+|+++|.|++.+++.......+ .....+.... . ...+..+-.+....+.++.
T Consensus 175 ~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~-~---~~~y~~~~~~~~~~~~~~~ 249 (282)
T PRK12848 175 TVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLA-LLAWAGWLLG-L---GWAYYWGLLVAAALFVYQQ 249 (282)
T ss_pred HHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHH-HHHHHHHHhc-C---cHHHHHHHHHHHHHHHHHH
Confidence 334444566889999999999999999999998887644333322 2223333221 1 2233344445566677788
Q ss_pred hhccCCChhhHH-HHHH
Q 046670 134 QTVDLSSKASTL-SFYM 149 (153)
Q Consensus 134 ~~vdl~sk~si~-sfY~ 149 (153)
+.+|.+++++.. .|++
T Consensus 250 ~~~~~~~~~~~~~~F~~ 266 (282)
T PRK12848 250 KLIRDREREACFKAFLN 266 (282)
T ss_pred HHcCCCCHHHHHHHHHh
Confidence 899988877553 4443
No 32
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=98.84 E-value=3.2e-08 Score=84.49 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHH
Q 046670 41 RTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTII 120 (153)
Q Consensus 41 ~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~ 120 (153)
...+....+..+-+...+.+||++|+|||++.|++|+|+++|++++.++...+..+.++..+ +... ..+......
T Consensus 175 ~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~---~~g~~~~~~ 249 (297)
T PRK12871 175 MTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLR---ELGPIALYG 249 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHH---HhhHHHHHH
Confidence 33444445555667888889999999999999999999999999898765544444443333 2222 122222222
Q ss_pred HHHHHHHHHHHHHhhccCCChhhH
Q 046670 121 SHSMLATLLWHQAQTVDLSSKAST 144 (153)
Q Consensus 121 ~H~il~~~Lw~r~~~vdl~sk~si 144 (153)
.-.+.+..+.+|.+..+.++|++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~ 273 (297)
T PRK12871 250 FLAGFVLLAGANLYLWKEKSQDAG 273 (297)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHH
Confidence 224445566777777777777754
No 33
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=98.82 E-value=6.5e-08 Score=82.25 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Q 046670 43 LMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISH 122 (153)
Q Consensus 43 v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H 122 (153)
.+++...+.+-+.+..++++++|+|+|++.|++|+|+++|++++.+++........+..+..+.... . ......+-
T Consensus 169 ~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~ 244 (291)
T PRK12874 169 SVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAH-L---GLFAYLGV 244 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhc-c---hHHHHHHH
Confidence 3344444556677778899999999999999999999999999988765444433333333333222 1 12233344
Q ss_pred HHHHHHHHHHHhhccCCChhhHHHH
Q 046670 123 SMLATLLWHQAQTVDLSSKASTLSF 147 (153)
Q Consensus 123 ~il~~~Lw~r~~~vdl~sk~si~sf 147 (153)
.+.+..++++.+.++.++++.-..|
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~f 269 (291)
T PRK12874 245 IVSALILLYEHYLVRKDFKKIDKAF 269 (291)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4456667777777776666555554
No 34
>PRK13592 ubiA prenyltransferase; Provisional
Probab=98.80 E-value=8.2e-09 Score=89.11 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=63.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHH--HHH-HHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccch
Q 046670 2 KRSSFLTTLYTVLERGLLLQFA--YFI-HIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLS 78 (153)
Q Consensus 2 KR~p~~Aa~cI~~vRg~ivnlg--~f~-h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~ 78 (153)
||.|+...+.+...-|..+-.| +|. -+.....|.|.. .-..+.+.....+.+.+.|+.||+|| |||+++ .+|+|
T Consensus 134 K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~-~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlp 210 (299)
T PRK13592 134 KRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLL-SLPTVLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYS 210 (299)
T ss_pred cccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchh-hHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC-Ceeec
Confidence 6666666666666666554333 211 111222343332 12224556788899999999999999 899975 99999
Q ss_pred hhhcHHHHHHHHHHHHHHHHH
Q 046670 79 VILGKESVLWLCVYVLVIAYG 99 (153)
Q Consensus 79 i~lG~~~~~~i~~~ll~~~y~ 99 (153)
+++|+|++.+++..+..+..+
T Consensus 211 i~~G~kkA~~ia~~l~ii~v~ 231 (299)
T PRK13592 211 KLFGYKKATRFIEVVTLLDIL 231 (299)
T ss_pred hhccchhHHHHHHHHHHHHHH
Confidence 999999999998877664433
No 35
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=98.79 E-value=9e-08 Score=81.36 Aligned_cols=92 Identities=17% Similarity=0.091 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHH
Q 046670 9 TLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLW 88 (153)
Q Consensus 9 a~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~ 88 (153)
=++++...|.+.-+|-| ..|+ ..++.+.+....-+.+.+..+-..++++|+|.|++.|.||+|+++|+|++.+
T Consensus 136 E~~v~l~~G~l~v~g~~-yvqt------~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ 208 (285)
T TIGR02235 136 EPICWLCFGPLAIAAAL-YAQS------QSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAK 208 (285)
T ss_pred HHHHHHHHHHHHHHHHH-HHhC------CcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHH
Confidence 34445556655555543 2232 3567777777888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 046670 89 LCVYVLVIAYGAAVIVGLT 107 (153)
Q Consensus 89 i~~~ll~~~y~~ai~~g~~ 107 (153)
+-..++..+|+..+..-..
T Consensus 209 l~~~l~~~~y~~~i~~v~~ 227 (285)
T TIGR02235 209 IVPWVISLSYVVLLIAVIG 227 (285)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999977655443
No 36
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=98.74 E-value=1.3e-07 Score=81.35 Aligned_cols=61 Identities=20% Similarity=0.135 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 046670 46 AVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGL 106 (153)
Q Consensus 46 ~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~ 106 (153)
...=+.+....+.+.|+++|+|+||+.|.||+|+++|+|++.++-..+...+|+..+..-.
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~ 254 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVL 254 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566678899999999999999999999999999999999999999987664433
No 37
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=98.74 E-value=1.7e-07 Score=79.62 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=57.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 046670 38 AITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGL 106 (153)
Q Consensus 38 ~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~ 106 (153)
.++...+....-..+.+..+...++++|+|+|++.|.+|+|+++|+|++.++-..++..+|+..+....
T Consensus 161 ~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~ 229 (284)
T TIGR00751 161 RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFML 229 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555667778888899999999999999999999999999999999999999987665544
No 38
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=98.74 E-value=1.6e-07 Score=80.79 Aligned_cols=93 Identities=18% Similarity=0.089 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHH
Q 046670 9 TLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLW 88 (153)
Q Consensus 9 a~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~ 88 (153)
-..++..-|.+.-+|-| +.|+ ..++...+....-+.+.+..+-..++++|+|.||+.|.||+|+++|+|++.+
T Consensus 149 E~~v~l~~G~l~v~g~~-yv~t------~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ 221 (304)
T PRK07419 149 EPLCFLAFGPLAVAAAL-YSQT------PSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQ 221 (304)
T ss_pred HHHHHHHHHHHHHHHHH-HHhc------CCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHH
Confidence 33444444555444443 2232 3456677777777888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 046670 89 LCVYVLVIAYGAAVIVGLTS 108 (153)
Q Consensus 89 i~~~ll~~~y~~ai~~g~~~ 108 (153)
+-..+...+|+..+......
T Consensus 222 ly~~l~~~ay~~~i~~v~~g 241 (304)
T PRK07419 222 LLPWIVGLIYALELLPVLLG 241 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999877665543
No 39
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=98.73 E-value=1.9e-07 Score=80.25 Aligned_cols=96 Identities=13% Similarity=0.225 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Q 046670 49 IKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATL 128 (153)
Q Consensus 49 f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~ 128 (153)
...+-..+-+.+++.+|+|+|++.|++|+|+++|.+++.++........++.. +.+.... ..+ ....+=..+...
T Consensus 200 ~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~-l~~~~~~-~~~---~~~~~~~~~~~~ 274 (314)
T PRK12878 200 GSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMG-LAFWLAG-VPL---LALLGLLAAAAH 274 (314)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHH-HHHHHhc-CcH---HHHHHHHHHHHH
Confidence 34444556667889999999999999999999999999887754444333322 2332221 111 111222223334
Q ss_pred HHHHHhhccCCChhhHHHHHH
Q 046670 129 LWHQAQTVDLSSKASTLSFYM 149 (153)
Q Consensus 129 Lw~r~~~vdl~sk~si~sfY~ 149 (153)
+.++.+++|.+++++-.++++
T Consensus 275 l~~~~~~~~~~~~~~~~~~F~ 295 (314)
T PRK12878 275 LAWQIARLDIDDPDQCLRLFK 295 (314)
T ss_pred HHHHHHHcccCChHHHHHHHH
Confidence 667788888887776555543
No 40
>PLN02922 prenyltransferase
Probab=98.57 E-value=1.9e-06 Score=74.31 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=61.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046670 39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTS 108 (153)
Q Consensus 39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~ 108 (153)
++..++...+=+.+.+..+-+.++++|+|.||+.|.||+|+++|+|++.++-..+...+|+..+...+..
T Consensus 186 ~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~ 255 (315)
T PLN02922 186 LTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLK 255 (315)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777778888889999999999999999999999999999999999999999998887665554
No 41
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=98.52 E-value=2.2e-06 Score=73.63 Aligned_cols=100 Identities=9% Similarity=0.060 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Q 046670 48 AIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLAT 127 (153)
Q Consensus 48 ~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~ 127 (153)
..+.+-..+-..+++.+|.|+|++.|++|+|+++|.+ +..++..+..+..+....+|.... . ......+=.+.+.
T Consensus 177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~-l---~~~y~~~~~~~~~ 251 (294)
T PRK12873 177 LATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQ-V---GFIFWPFWLIASI 251 (294)
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhC-C---cHHHHHHHHHHHH
Confidence 3344445556669999999999999999999999974 555555555555555555665543 2 1223334445566
Q ss_pred HHHHHHhhccCCC---hhhHHHHHHhhc
Q 046670 128 LLWHQAQTVDLSS---KASTLSFYMFIW 152 (153)
Q Consensus 128 ~Lw~r~~~vdl~s---k~si~sfY~fIW 152 (153)
.+.++.+.+|.++ ++....|.+..|
T Consensus 252 ~l~~~~~~~~~~~~~~~~c~~~F~~n~~ 279 (294)
T PRK12873 252 GMQRDILKLFPEKQSIKTIGNHFSNQVI 279 (294)
T ss_pred HHHHHHHHhCcCcccHHHHHHHHHhccH
Confidence 7778899999887 445577776654
No 42
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=98.31 E-value=2.7e-05 Score=65.19 Aligned_cols=85 Identities=14% Similarity=0.139 Sum_probs=49.3
Q ss_pred cCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCC-C
Q 046670 62 DIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLS-S 140 (153)
Q Consensus 62 Di~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~-s 140 (153)
..+|.|.||+.|++|+|+++|.|++.+++............+.+.... .+....+.+=.+.+..++++.+.+|.+ +
T Consensus 179 a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~y~~~~~~~~~~~l~~~~~~~~~~~~ 255 (280)
T TIGR01473 179 ALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG---TGWLYLIVATLLGALFLYLAFKFYRDPTD 255 (280)
T ss_pred HHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 357888999999999999999999888766554443333333332211 112222222233345556666666655 4
Q ss_pred hh-hHHHHHH
Q 046670 141 KA-STLSFYM 149 (153)
Q Consensus 141 k~-si~sfY~ 149 (153)
++ +-+.|+.
T Consensus 256 ~~~~~~~f~~ 265 (280)
T TIGR01473 256 RKKARKLFKF 265 (280)
T ss_pred HHHHHHHHHH
Confidence 43 4444443
No 43
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=98.30 E-value=2.8e-05 Score=65.50 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=28.5
Q ss_pred cCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHH
Q 046670 62 DIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVI 96 (153)
Q Consensus 62 Di~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~ 96 (153)
+.+|.|.|++.|++|+|+++|+|++.++......+
T Consensus 180 ~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~ 214 (279)
T PRK12869 180 ALKYREDYRRAGVPMLPAVVGEKTSVRAISISNAL 214 (279)
T ss_pred HHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHH
Confidence 55688889999999999999999998876555443
No 44
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=98.11 E-value=7.3e-05 Score=63.44 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=27.5
Q ss_pred HccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHH
Q 046670 60 LKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAY 98 (153)
Q Consensus 60 ~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y 98 (153)
+||.|| |++.|++|+|+++|.|++.+++.....+..
T Consensus 189 ~~d~~D---~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~ 224 (296)
T PRK04375 189 IFRKDD---YAAAGIPMLPVVKGIRVTKRQILLYTVLLV 224 (296)
T ss_pred HHHHhh---HHHcCCCccceeeCHHHHHHHHHHHHHHHH
Confidence 556555 799999999999999998886655544433
No 45
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=97.73 E-value=0.00086 Score=58.36 Aligned_cols=72 Identities=24% Similarity=0.242 Sum_probs=60.0
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046670 36 PIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLT 107 (153)
Q Consensus 36 ~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~ 107 (153)
...++.......+...+-+..+.+.+.+-|+|=|++.|-+|+|+|+|++++...=..++..+|+..++.-..
T Consensus 171 t~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~ 242 (303)
T COG1575 171 TGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVIL 242 (303)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777888888888999999999999999999999999999999888888888777654333
No 46
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=97.45 E-value=0.0068 Score=52.18 Aligned_cols=36 Identities=22% Similarity=0.028 Sum_probs=29.2
Q ss_pred HHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHH
Q 046670 56 VISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCV 91 (153)
Q Consensus 56 ~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~ 91 (153)
.-...++++|.|+|++.|++|+|++.|+|++.+.+.
T Consensus 185 ~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~ 220 (306)
T PRK13362 185 PHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIV 220 (306)
T ss_pred HHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHH
Confidence 333457788888889999999999999998887544
No 47
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=85.04 E-value=0.99 Score=39.15 Aligned_cols=50 Identities=32% Similarity=0.444 Sum_probs=40.6
Q ss_pred HccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 046670 60 LKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSS 109 (153)
Q Consensus 60 ~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~ 109 (153)
-+.-.|.|.||+.||-|+++.+|+.....+-..++..-|..-.+.|+-.+
T Consensus 248 snntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~s 297 (359)
T KOG4581|consen 248 SNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCS 297 (359)
T ss_pred cCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999988877777777777777666665543
No 48
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=84.59 E-value=8 Score=33.09 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHccCCCchhhhhcCCccchhh---hcHHHHHHHHHHHHH
Q 046670 46 AVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVI---LGKESVLWLCVYVLV 95 (153)
Q Consensus 46 ~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~---lG~~~~~~i~~~ll~ 95 (153)
......++..+.+.++|.-|.|-|+..+ ++=|+. +.++.+..++..++.
T Consensus 59 ~ll~~~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G~is~~~a~~~~~~l~~ 110 (306)
T TIGR02056 59 MLLSGPCLTGYTQTINDFYDRDIDAINE-PYRPIPSGAISEPEVITQIVLLFI 110 (306)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhhccCC-CCCCCCCCccCHHHHHHHHHHHHH
Confidence 3445566677778999999999998766 333433 456666655544443
No 49
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=79.43 E-value=26 Score=29.44 Aligned_cols=41 Identities=20% Similarity=0.096 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCchhhhhcCC-ccchhhhc
Q 046670 42 TLMFAVAIKCCFCFVISVLKDIPDEDGDREFGI-RTLSVILG 82 (153)
Q Consensus 42 ~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi-~Tl~i~lG 82 (153)
.+................++|+.|.|=||++-- +.=|+--|
T Consensus 48 ~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG 89 (289)
T COG0382 48 LLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSG 89 (289)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCC
Confidence 444444444555566667999999999998765 23344334
No 50
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=79.29 E-value=3.6 Score=36.43 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=53.8
Q ss_pred cCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCh
Q 046670 62 DIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSK 141 (153)
Q Consensus 62 Di~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk 141 (153)
--+|-+-|-+-|+++-+.|+|.+.=.|++. +-..-.....++|..+- ..| ..+. +-+..+.=|-++-.+||++++
T Consensus 245 AHQDK~dDvk~gvkSTALrfG~nTK~wl~g-f~a~~ia~La~aG~~s~-q~~--pyy~-~lg~~~~~L~~~i~~vdiDnp 319 (353)
T KOG1381|consen 245 AHQDKRDDVKIGVKSTALRFGDNTKPWLSG-FGAAQIASLAAAGIASD-QTW--PYYA-ALGAVAARLGSQIYKVDIDNP 319 (353)
T ss_pred hcccchhhhHhcchhhhhhcCCCCchHHhh-hhHHHHHHHHHhhhccC-CCc--hHHH-HHHHHHHHHHhheeeeecCCh
Confidence 458999999999999999999887666643 22222333334466654 444 2222 244456667889999999988
Q ss_pred hhHHHH
Q 046670 142 ASTLSF 147 (153)
Q Consensus 142 ~si~sf 147 (153)
+..-+.
T Consensus 320 ~dC~k~ 325 (353)
T KOG1381|consen 320 SDCWKK 325 (353)
T ss_pred HHHHHH
Confidence 866543
No 51
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=78.81 E-value=8.3 Score=31.99 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhc---HHHHHHHHHHHHH
Q 046670 47 VAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILG---KESVLWLCVYVLV 95 (153)
Q Consensus 47 t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG---~~~~~~i~~~ll~ 95 (153)
..-..+...+.++++|..|.|=|++. -+.=|+.-| ++.+..++..+..
T Consensus 43 ~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~ 93 (279)
T PRK12884 43 FLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFI 93 (279)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 33344555666779999999999988 355666656 5556555544443
No 52
>PLN02776 prenyltransferase
Probab=77.46 E-value=52 Score=29.24 Aligned_cols=75 Identities=17% Similarity=0.044 Sum_probs=37.4
Q ss_pred hhhhcCCccchhhh--cHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHH
Q 046670 68 GDREFGIRTLSVIL--GKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSMLATLLWHQAQTVDLSSKASTL 145 (153)
Q Consensus 68 GD~~~Gi~Tl~i~l--G~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~si~ 145 (153)
-|++-|++.+|+.- |++.+..+......+.-...+..+.-.. .....+.+-.+-+..+++.-+-+..+|++...
T Consensus 178 Dy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~----~~~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar 253 (341)
T PLN02776 178 DYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVT----SSPFALEAALLTAYLAASAASFYREPTNANAR 253 (341)
T ss_pred HHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 47789999999865 5666666655444433322222221111 12233333333344555555555444444443
Q ss_pred H
Q 046670 146 S 146 (153)
Q Consensus 146 s 146 (153)
+
T Consensus 254 ~ 254 (341)
T PLN02776 254 K 254 (341)
T ss_pred H
Confidence 3
No 53
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=75.01 E-value=12 Score=31.32 Aligned_cols=42 Identities=14% Similarity=0.005 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHccCCCchhhhhcCCccchhh---hcHHHHHHHHHH
Q 046670 50 KCCFCFVISVLKDIPDEDGDREFGIRTLSVI---LGKESVLWLCVY 92 (153)
Q Consensus 50 ~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~---lG~~~~~~i~~~ 92 (153)
..++..+.+.++|.-|.|-|+..+ ++=|+. +-+|.+..++..
T Consensus 47 ~~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~ 91 (283)
T TIGR01476 47 GPLGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLV 91 (283)
T ss_pred HHHHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHH
Confidence 344566677899999999999765 333433 335555555443
No 54
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=72.74 E-value=17 Score=30.40 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHccCCCchhhhhcCCccchhh---hcHHHHHHHHHHHHH
Q 046670 49 IKCCFCFVISVLKDIPDEDGDREFGIRTLSVI---LGKESVLWLCVYVLV 95 (153)
Q Consensus 49 f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~---lG~~~~~~i~~~ll~ 95 (153)
-..+...+-+.++|+-|.|-|++.. +.=|+. +.++.+..++..+..
T Consensus 45 ~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~ 93 (279)
T PRK09573 45 VVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFI 93 (279)
T ss_pred HHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHH
Confidence 3345566667799999999999764 444553 445666555554443
No 55
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=71.46 E-value=28 Score=30.02 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=21.0
Q ss_pred HHHHHHHHHH----HccCCCchhhhhcCCccchhhhc
Q 046670 50 KCCFCFVISV----LKDIPDEDGDREFGIRTLSVILG 82 (153)
Q Consensus 50 ~~~f~~~iai----~KDi~DieGD~~~Gi~Tl~i~lG 82 (153)
..+.....++ ++|..|.|=|+... ++-|+.=|
T Consensus 58 ~~~~~~~~nv~i~~iNd~~D~~iD~ink-p~rPiasG 93 (308)
T PRK12887 58 AWIACLCGNVYIVGLNQLTDIEIDRINK-PHLPLAAG 93 (308)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhcCC-CCCCcCCc
Confidence 3344444455 99999999999654 66665434
No 56
>PRK13595 ubiA prenyltransferase; Provisional
Probab=70.45 E-value=50 Score=28.73 Aligned_cols=54 Identities=24% Similarity=0.180 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchh---hhcHHHHHHHHHHHHH
Q 046670 41 RTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSV---ILGKESVLWLCVYVLV 95 (153)
Q Consensus 41 ~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i---~lG~~~~~~i~~~ll~ 95 (153)
..+.....|..-....+.-++|.-|.|=|+++. ++=|+ ++.++.+..++..++.
T Consensus 47 ~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Np-r~~~i~~G~is~~~~~~~~~~~~~ 103 (292)
T PRK13595 47 GVLPLLLYLTLPFNLLIYGLNDLADRETDAASP-RKGGWQGARLSPGEVRPLLRAVLL 103 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC-CCCCCCcCccCHHHHHHHHHHHHH
Confidence 444444566666777788899999999998432 22232 4555555554443333
No 57
>PLN00012 chlorophyll synthetase; Provisional
Probab=70.08 E-value=64 Score=28.83 Aligned_cols=38 Identities=13% Similarity=-0.003 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHccCCCchhhhhcCCccchhhhc---HHHHHH
Q 046670 50 KCCFCFVISVLKDIPDEDGDREFGIRTLSVILG---KESVLW 88 (153)
Q Consensus 50 ~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG---~~~~~~ 88 (153)
..+..-..++++|.-|.|-|+..+ +.=|+.-| ++.+..
T Consensus 132 ~~L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~ 172 (375)
T PLN00012 132 GPFLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVIT 172 (375)
T ss_pred HHHHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHH
Confidence 334445567899999999998876 44454444 444444
No 58
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=68.57 E-value=17 Score=30.20 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHccCCCchhhhhcCCccchhhhc---HHHHHHHHHHHHH
Q 046670 50 KCCFCFVISVLKDIPDEDGDREFGIRTLSVILG---KESVLWLCVYVLV 95 (153)
Q Consensus 50 ~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG---~~~~~~i~~~ll~ 95 (153)
..+..-+-+.++|.-|.|-|++.. +.=|+.-| ++.+..++..+..
T Consensus 47 ~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~ 94 (276)
T PRK12882 47 VFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFA 94 (276)
T ss_pred HHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHH
Confidence 344455566799999999999755 55565555 5555555544443
No 59
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=64.43 E-value=81 Score=26.04 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHccCCCchhhhhcC
Q 046670 46 AVAIKCCFCFVISVLKDIPDEDGDREFG 73 (153)
Q Consensus 46 ~t~f~~~f~~~iai~KDi~DieGD~~~G 73 (153)
......+...+...++|..|.|-|+...
T Consensus 41 ~~~~~~~~~~~~~~~N~~~D~~~D~~n~ 68 (285)
T PRK12872 41 LLLITFLIAAAVYIINYLTDLEEDIINK 68 (285)
T ss_pred HHHHHHHHHHHHHHhhhhcCCchhhcCC
Confidence 3334455566777799999999998654
No 60
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=60.96 E-value=26 Score=30.22 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=27.7
Q ss_pred HHHHHHHHHHccCCCchhhhhc---CCccchh-hhcHHHHHHHHHHHHH
Q 046670 51 CCFCFVISVLKDIPDEDGDREF---GIRTLSV-ILGKESVLWLCVYVLV 95 (153)
Q Consensus 51 ~~f~~~iai~KDi~DieGD~~~---Gi~Tl~i-~lG~~~~~~i~~~ll~ 95 (153)
++.+-+..+++|+-|.|=||++ .-|-+|- ++.++.+..++..++.
T Consensus 56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~ 104 (295)
T PRK12324 56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLV 104 (295)
T ss_pred HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHH
Confidence 3444556679999999999985 2333332 3455555555544443
No 61
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=60.05 E-value=26 Score=29.30 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHccCCCchhhhhc---CCccchh-hhcHHHHHHHHH
Q 046670 47 VAIKCCFCFVISVLKDIPDEDGDREF---GIRTLSV-ILGKESVLWLCV 91 (153)
Q Consensus 47 t~f~~~f~~~iai~KDi~DieGD~~~---Gi~Tl~i-~lG~~~~~~i~~ 91 (153)
.+-..+..-+-+.++|.-|.|-|++. .-|.+|- ++.++.+..++.
T Consensus 42 ~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~ 90 (282)
T TIGR01475 42 LIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMII 90 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHH
Confidence 33444556677789999999999986 2344443 455566655544
No 62
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=59.86 E-value=30 Score=29.65 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=27.2
Q ss_pred HHHHHHHHccCCCchhhhhcCCccchh---hhcHHHHHHHHHHHHH
Q 046670 53 FCFVISVLKDIPDEDGDREFGIRTLSV---ILGKESVLWLCVYVLV 95 (153)
Q Consensus 53 f~~~iai~KDi~DieGD~~~Gi~Tl~i---~lG~~~~~~i~~~ll~ 95 (153)
..-+.++++|.-|.|-|++.+ ++=|+ ++.++.+..++..++.
T Consensus 77 ~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l~~ 121 (314)
T PRK07566 77 LCGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVLTV 121 (314)
T ss_pred HHHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHHHH
Confidence 455667899999999999754 34444 3455566555554443
No 63
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=57.90 E-value=92 Score=24.56 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=22.5
Q ss_pred HHHHHHHHHHccCCCchhhhhcC-CccchhhhcH
Q 046670 51 CCFCFVISVLKDIPDEDGDREFG-IRTLSVILGK 83 (153)
Q Consensus 51 ~~f~~~iai~KDi~DieGD~~~G-i~Tl~i~lG~ 83 (153)
.+........+|..|.|=|+... -+.-|+.-|+
T Consensus 33 ~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~ 66 (257)
T PF01040_consen 33 FLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGR 66 (257)
T ss_pred HHHHHHHHHhhChhhhhcCcccccccCcchhHHH
Confidence 36677777899999999999952 2333443443
No 64
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=56.62 E-value=43 Score=27.84 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=25.7
Q ss_pred HHHHHHHccCCCchhhhhcCCccchhhh---cHHHHHHHHHHH
Q 046670 54 CFVISVLKDIPDEDGDREFGIRTLSVIL---GKESVLWLCVYV 93 (153)
Q Consensus 54 ~~~iai~KDi~DieGD~~~Gi~Tl~i~l---G~~~~~~i~~~l 93 (153)
..+.+.++|.-|.|=|+.+. ++=|+.- -++.+..++..+
T Consensus 50 ~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l 91 (277)
T PRK12883 50 CSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLL 91 (277)
T ss_pred HHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHH
Confidence 35678899999999999765 5555543 455555544433
No 65
>PRK13591 ubiA prenyltransferase; Provisional
Probab=55.62 E-value=1.1e+02 Score=26.81 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCchhhhhc
Q 046670 26 IHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREF 72 (153)
Q Consensus 26 ~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~ 72 (153)
.|+....+|.|..+|-.+. ..+....-..++|.-|.|-|+..
T Consensus 48 ~~~a~lL~g~~~~~~~~~~-----~~L~~~s~~~iNd~~D~eiD~IN 89 (307)
T PRK13591 48 IHIAFLLLGLQSSILTCIA-----GGLIIYSVYTLDRALDSEEDAVN 89 (307)
T ss_pred HHHHHHHhCCCcchHHHHH-----HHHHHHHHHHHhhhccchhhhcc
Confidence 4766667788877765543 23445667788999999999885
No 66
>PRK13592 ubiA prenyltransferase; Provisional
Probab=54.12 E-value=29 Score=30.44 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=38.7
Q ss_pred HHHHHHhcCCcccchHHHHHHHHHH--HHHHHHHHHccCCCchhhhhcCC-ccchh-hhcHHHHHHHHHHH
Q 046670 27 HIQKYVLGRPIAITRTLMFAVAIKC--CFCFVISVLKDIPDEDGDREFGI-RTLSV-ILGKESVLWLCVYV 93 (153)
Q Consensus 27 h~~~~~~~~~~~~~~~v~f~t~f~~--~f~~~iai~KDi~DieGD~~~Gi-~Tl~i-~lG~~~~~~i~~~l 93 (153)
.+-+.+..+...|++..=...++.+ +++..-++++|..|.|=||.+.= |-+|- +.-+|.+...+..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L 100 (299)
T PRK13592 30 YMITLLSNHISSFRIGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFI 100 (299)
T ss_pred HHHhhhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHH
Confidence 4555555556666654444433333 44566788999999999987631 22221 23345555555444
No 67
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=53.23 E-value=1.4e+02 Score=25.31 Aligned_cols=43 Identities=12% Similarity=-0.092 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHccCCCchhhhhcC---Cccchh-hhcHHHHHHHH
Q 046670 48 AIKCCFCFVISVLKDIPDEDGDREFG---IRTLSV-ILGKESVLWLC 90 (153)
Q Consensus 48 ~f~~~f~~~iai~KDi~DieGD~~~G---i~Tl~i-~lG~~~~~~i~ 90 (153)
.-+.+...+-..++|+-|.|-|++.. -|.+|- ++.++.+...+
T Consensus 46 l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~ 92 (284)
T PRK12888 46 VAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGA 92 (284)
T ss_pred HHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 33344455556799999999999874 454443 23344444443
No 68
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=52.87 E-value=1.3e+02 Score=24.96 Aligned_cols=48 Identities=13% Similarity=0.042 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHccCCCchhhhhcC---Cccchh-hhcHHHHHHHHHHHH
Q 046670 47 VAIKCCFCFVISVLKDIPDEDGDREFG---IRTLSV-ILGKESVLWLCVYVL 94 (153)
Q Consensus 47 t~f~~~f~~~iai~KDi~DieGD~~~G---i~Tl~i-~lG~~~~~~i~~~ll 94 (153)
++-..+..-+-+.++|.-|.|=|++.. -|.+|- ++.+|.+..++..++
T Consensus 41 ~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~ 92 (280)
T TIGR01473 41 LLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLG 92 (280)
T ss_pred HHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 333445556667799999999999732 344433 445666666554443
No 69
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=52.84 E-value=59 Score=27.32 Aligned_cols=47 Identities=11% Similarity=0.018 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHccCCCchhhhhcC---Cccchh-hhcHHHHHHHHHHH
Q 046670 47 VAIKCCFCFVISVLKDIPDEDGDREFG---IRTLSV-ILGKESVLWLCVYV 93 (153)
Q Consensus 47 t~f~~~f~~~iai~KDi~DieGD~~~G---i~Tl~i-~lG~~~~~~i~~~l 93 (153)
++-..+..-+-+.++|+-|.|=|++.. -|.+|- +..++.+..++..+
T Consensus 42 ~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~ 92 (279)
T PRK12869 42 LIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSAL 92 (279)
T ss_pred HHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHH
Confidence 334444566667899999999999854 354543 34566665554433
No 70
>PRK08238 hypothetical protein; Validated
Probab=49.52 E-value=24 Score=32.45 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=26.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCC
Q 046670 39 ITRTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGI 74 (153)
Q Consensus 39 ~~~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi 74 (153)
.+.+-|++ +|..++....++.|+..|++++++.|-
T Consensus 343 ~~~s~wll-~~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 343 VALSFWLL-AFSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred cCHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 34555544 355677888999999999999988875
No 71
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=49.01 E-value=1.7e+02 Score=24.97 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=16.7
Q ss_pred HHHHH----HccCCCchhhhhcCCcc
Q 046670 55 FVISV----LKDIPDEDGDREFGIRT 76 (153)
Q Consensus 55 ~~iai----~KDi~DieGD~~~Gi~T 76 (153)
+.-++ ++|+-|.|-||...-|.
T Consensus 55 i~~Nl~~y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 55 FPANVFLYGVNDVFDADTDELNPKKD 80 (282)
T ss_pred HHHHHHHhcchhhhhhhccccCCCcc
Confidence 44555 69999999998876554
No 72
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=47.53 E-value=53 Score=24.92 Aligned_cols=46 Identities=9% Similarity=0.312 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHH
Q 046670 7 LTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFV 56 (153)
Q Consensus 7 ~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~ 56 (153)
...+-++++-=++||+-+|+|+.+ ++-..+...+|...|+.+-++.
T Consensus 57 ~~~I~~lAvvQi~VqL~yFLHm~~----k~~~~~~~~if~gi~va~~tv~ 102 (110)
T TIGR02908 57 IPFILLLAAVQVAFQLYYFMHMKD----KGHEVPAQFIYGGVFVTMLVVL 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCC----CccchHHHHHHHHHHHHHHHHH
Confidence 344556666677899999999874 4555666677776666655443
No 73
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=46.20 E-value=1.8e+02 Score=24.59 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHccCCC--chhhhhc----CCccchh-hhcHHHHHHHHHHHHHHH
Q 046670 49 IKCCFCFVISVLKDIPD--EDGDREF----GIRTLSV-ILGKESVLWLCVYVLVIA 97 (153)
Q Consensus 49 f~~~f~~~iai~KDi~D--ieGD~~~----Gi~Tl~i-~lG~~~~~~i~~~ll~~~ 97 (153)
-..+...+-+.++|..| .+-|+++ .-|+++- ++-+|.+...+..++.++
T Consensus 48 ~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia 103 (296)
T PRK05951 48 GYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIA 103 (296)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHH
Confidence 34455566778999999 4445441 2233332 345677777666554433
No 74
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=45.28 E-value=1e+02 Score=21.42 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 046670 82 GKESVLWLCVYVLVIAYGAAVIVGLTSS 109 (153)
Q Consensus 82 G~~~~~~i~~~ll~~~y~~ai~~g~~~~ 109 (153)
|+|.+-.+...++.+....+.+.|....
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q 32 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQ 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998875
No 75
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=44.48 E-value=1.3e+02 Score=25.20 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=26.9
Q ss_pred HHHHHHHHHHccCCCchhhhhcC---Cccchh-hhcHHHHHHHHHHHH
Q 046670 51 CCFCFVISVLKDIPDEDGDREFG---IRTLSV-ILGKESVLWLCVYVL 94 (153)
Q Consensus 51 ~~f~~~iai~KDi~DieGD~~~G---i~Tl~i-~lG~~~~~~i~~~ll 94 (153)
.+..-+-+.++|..|.|=|++.. -|.+|- ++.++.+..++..++
T Consensus 55 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~ 102 (285)
T PRK12847 55 VLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILL 102 (285)
T ss_pred HHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHH
Confidence 45556667899999999998632 233333 344555555544443
No 76
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=42.97 E-value=1.1e+02 Score=26.38 Aligned_cols=24 Identities=8% Similarity=-0.103 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHccCCCchhhhhc
Q 046670 49 IKCCFCFVISVLKDIPDEDGDREF 72 (153)
Q Consensus 49 f~~~f~~~iai~KDi~DieGD~~~ 72 (153)
-+.+...+-+.++|+-|.|=|++.
T Consensus 57 g~~l~~~a~~~~Nd~~D~diD~~~ 80 (300)
T PRK13106 57 ALFFLRTAGMTNDNLADLEIDAKN 80 (300)
T ss_pred HHHHHHHHHHHHHhhHHhccccCC
Confidence 334445555669999999999876
No 77
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=40.18 E-value=2.5e+02 Score=24.50 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=24.9
Q ss_pred HHHccCCCchhhhhcCCccchhhh---cHHHHHHHHHHHHHH
Q 046670 58 SVLKDIPDEDGDREFGIRTLSVIL---GKESVLWLCVYVLVI 96 (153)
Q Consensus 58 ai~KDi~DieGD~~~Gi~Tl~i~l---G~~~~~~i~~~ll~~ 96 (153)
..++|.-|.|=|+..+ +|=|+.- .+|.+..++..+..+
T Consensus 67 ~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~l 107 (331)
T PRK12392 67 QSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLL 107 (331)
T ss_pred hHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHH
Confidence 5699999999998654 4544433 466666665554443
No 78
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=39.86 E-value=2.4e+02 Score=24.03 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHccCCCch-----hhhhcCCccchh-hhcHHHHHHHHHHHHHHHHHHHHHH
Q 046670 49 IKCCFCFVISVLKDIPDED-----GDREFGIRTLSV-ILGKESVLWLCVYVLVIAYGAAVIV 104 (153)
Q Consensus 49 f~~~f~~~iai~KDi~Die-----GD~~~Gi~Tl~i-~lG~~~~~~i~~~ll~~~y~~ai~~ 104 (153)
...++..+.++.+|..|-+ .|+..+.|.++- .+-+|.+..++..++.++.+.++..
T Consensus 36 ~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l 97 (284)
T TIGR00751 36 TAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVL 97 (284)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888899999872 344444555432 3445777777766665554444433
No 79
>PLN02878 homogentisate phytyltransferase
Probab=39.50 E-value=2.1e+02 Score=24.94 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=15.9
Q ss_pred HccCCCchhhhhcCCccchhhhc
Q 046670 60 LKDIPDEDGDREFGIRTLSVILG 82 (153)
Q Consensus 60 ~KDi~DieGD~~~Gi~Tl~i~lG 82 (153)
++|..|+|=||.+. -..|+-=|
T Consensus 42 lNd~~D~EIDkINk-P~rPIpSG 63 (280)
T PLN02878 42 LNQLYDIEIDKVNK-PYLPLASG 63 (280)
T ss_pred hhhhhhhcccccCC-CCCCCCCC
Confidence 67999999998653 45666544
No 80
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=39.47 E-value=1.5e+02 Score=21.78 Aligned_cols=46 Identities=9% Similarity=0.193 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHH
Q 046670 6 FLTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFC 54 (153)
Q Consensus 6 ~~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~ 54 (153)
..+.+-.+++--+++|+=+|+|+.+ ++...++-.-...+.++.+..
T Consensus 35 ~~~~i~~~A~iQi~vqL~~FlHl~~---~~~~~~n~~~l~Ft~~i~~ii 80 (96)
T TIGR02847 35 TLVIIIVLAVVQILVHLVFFLHLNT---SSEQRWNLISLLFTILIIFIL 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC---ccccchHHHHHHHHHHHHHHH
Confidence 4455556677778899999999885 334445544444444444333
No 81
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=39.39 E-value=1.1e+02 Score=25.73 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=25.4
Q ss_pred HHHHHHHHHHccCCCchhhhhcCC-ccchhhhc---HHHHHHHHHHH
Q 046670 51 CCFCFVISVLKDIPDEDGDREFGI-RTLSVILG---KESVLWLCVYV 93 (153)
Q Consensus 51 ~~f~~~iai~KDi~DieGD~~~Gi-~Tl~i~lG---~~~~~~i~~~l 93 (153)
.+..-+-+.++|+.|.|=|++..- +.=|+--| ++.+...+..+
T Consensus 50 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~ 96 (281)
T TIGR01474 50 ILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQ 96 (281)
T ss_pred HHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHH
Confidence 344556668999999999985431 12343334 45555544433
No 82
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=36.46 E-value=2.5e+02 Score=24.23 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHccCCCch--hhhhcCCccchhh--hcHHHHHHHHHHHHHHHHHHHH
Q 046670 48 AIKCCFCFVISVLKDIPDED--GDREFGIRTLSVI--LGKESVLWLCVYVLVIAYGAAV 102 (153)
Q Consensus 48 ~f~~~f~~~iai~KDi~Die--GD~~~Gi~Tl~i~--lG~~~~~~i~~~ll~~~y~~ai 102 (153)
.....+-.+.++++|..|-+ -|++.- +. +.+ ..+|.+.+++..++.++-+..+
T Consensus 55 l~~~l~q~~~N~~NDy~D~~~G~D~~~~-~~-~~~~~~~~~~v~~~~~~~~~~a~~~Gl 111 (304)
T PRK07419 55 LAAILILAWENLSNDVFDADTGIDKNKF-HS-VVNLTGNKSLVFWLANLFLLLGLLGIL 111 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcccc-cC-cccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 34445556678899999877 565311 11 111 1366677766655554433333
No 83
>PRK08238 hypothetical protein; Validated
Probab=36.42 E-value=1.1e+02 Score=28.15 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=27.1
Q ss_pred HHHHHHHHHHccCCCchhhhhcCC-ccchh---hhcHHHHHHHHHHHHH
Q 046670 51 CCFCFVISVLKDIPDEDGDREFGI-RTLSV---ILGKESVLWLCVYVLV 95 (153)
Q Consensus 51 ~~f~~~iai~KDi~DieGD~~~Gi-~Tl~i---~lG~~~~~~i~~~ll~ 95 (153)
++.+-+..+++|+-|.|=||++-- +.=|+ ++..+.+..++..++.
T Consensus 236 ~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~ 284 (479)
T PRK08238 236 SLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLL 284 (479)
T ss_pred HHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 355556677999999999999732 22233 3344455444444443
No 84
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=34.95 E-value=1.4e+02 Score=25.53 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=25.4
Q ss_pred HHHHHHHHHHccCCCchhhhhcC-Cccchhhhc---HHHHHHHHH
Q 046670 51 CCFCFVISVLKDIPDEDGDREFG-IRTLSVILG---KESVLWLCV 91 (153)
Q Consensus 51 ~~f~~~iai~KDi~DieGD~~~G-i~Tl~i~lG---~~~~~~i~~ 91 (153)
.+..-+-..++|+.|.|=|++.. -+.=|+.-| ++.+..++.
T Consensus 55 ~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~ 99 (289)
T PLN02809 55 LLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLG 99 (289)
T ss_pred HHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 34445555699999999998743 234565556 444444433
No 85
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=34.10 E-value=1.8e+02 Score=21.81 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046670 6 FLTTLYTVLERGLLLQFAYFIHIQK 30 (153)
Q Consensus 6 ~~Aa~cI~~vRg~ivnlg~f~h~~~ 30 (153)
....+-.+++--++||+-+|+|+.+
T Consensus 46 ~~~~i~~lA~vQi~VqL~~FLHl~~ 70 (109)
T PRK10582 46 ILGTILAMAVVQILVHLVCFLHMNT 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3445556677778899999999885
No 86
>PRK10133 L-fucose transporter; Provisional
Probab=33.75 E-value=3.2e+02 Score=23.82 Aligned_cols=76 Identities=9% Similarity=-0.004 Sum_probs=38.0
Q ss_pred chhhhcHHHHHHHHHHHHHHHHHHHHHHHhccCh--hHHHHHHHHHHHHHHHHHHHHHHhhccCCChh-hHHHHHHhhc
Q 046670 77 LSVILGKESVLWLCVYVLVIAYGAAVIVGLTSSP--YLLSKLVTIISHSMLATLLWHQAQTVDLSSKA-STLSFYMFIW 152 (153)
Q Consensus 77 l~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~--~~~~~~~~~~~H~il~~~Lw~r~~~vdl~sk~-si~sfY~fIW 152 (153)
+.-|+|+|++..++..+..+..+.....+...+- ....+.+...|++..-...-........+++. ...++++..|
T Consensus 84 l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~ 162 (438)
T PRK10133 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN 162 (438)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 4457899999998887777655443222222220 12334555666766533322212222222222 2456666554
No 87
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=32.52 E-value=1.9e+02 Score=22.71 Aligned_cols=31 Identities=35% Similarity=0.356 Sum_probs=25.4
Q ss_pred HHccCCCchhhh----------hcCCccchhhhcHHHHHHH
Q 046670 59 VLKDIPDEDGDR----------EFGIRTLSVILGKESVLWL 89 (153)
Q Consensus 59 i~KDi~DieGD~----------~~Gi~Tl~i~lG~~~~~~i 89 (153)
+..|+.|+.||. +.|-.|+|.....+.....
T Consensus 164 i~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~~ 204 (236)
T cd00867 164 LTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEY 204 (236)
T ss_pred HHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHHH
Confidence 388999999988 8999999999985555443
No 88
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=31.93 E-value=2.5e+02 Score=24.82 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=32.4
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHccCC------CchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046670 36 PIAITRTLMFAVAIKCCFCFVISVLKDIP------DEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGAAVIVGLT 107 (153)
Q Consensus 36 ~~~~~~~v~f~t~f~~~f~~~iai~KDi~------DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai~~g~~ 107 (153)
++.+.+.++++.+-. ++-...++.+|-. |-|||...+...+-.+-+.|+...+... ..+|.+.++.|+.
T Consensus 40 ~f~~~~~ll~Li~~~-~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~--l~~~~g~~llg~~ 114 (303)
T COG1575 40 SFNLLVALLALIAAI-LLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLA--LFLLAGLALLGVI 114 (303)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHH--HHHHHHHHHHHHH
Confidence 344445554443322 2333344444443 3336666666666555555554443332 3344455555555
No 89
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=31.19 E-value=1.7e+02 Score=21.40 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH
Q 046670 7 LTTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCF 55 (153)
Q Consensus 7 ~Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~ 55 (153)
...+-++++-=++||+-+|+|+.+. +...++-.....+.++.+..+
T Consensus 38 ~~~i~~lA~iQi~VqL~~FLHm~~~---~~~~~n~~~l~ft~~i~~i~v 83 (94)
T TIGR02901 38 LTIIIIFAFIQAGLQLIMFMHAGES---EDGKVQIYNIYYSAFIALVTV 83 (94)
T ss_pred HHHHHHHHHHHHHHHHHHheeecCC---cccchHHHHHHHHHHHHHHHH
Confidence 3444556666778999999998853 223355444444444444333
No 90
>PRK10581 geranyltranstransferase; Provisional
Probab=29.73 E-value=50 Score=28.30 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=31.1
Q ss_pred HHHHHHH--HccCCCchhh-----------hhcCCccchhhhcHHHHHHHHHHHHH
Q 046670 53 FCFVISV--LKDIPDEDGD-----------REFGIRTLSVILGKESVLWLCVYVLV 95 (153)
Q Consensus 53 f~~~iai--~KDi~DieGD-----------~~~Gi~Tl~i~lG~~~~~~i~~~ll~ 95 (153)
-.+|+++ ..|+-|+.|| .+.|-.|+|+..|.+.+...+--...
T Consensus 213 ~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~ 268 (299)
T PRK10581 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 268 (299)
T ss_pred HHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444 7788887765 45799999999999888876655544
No 91
>PRK10581 geranyltranstransferase; Provisional
Probab=28.22 E-value=1.8e+02 Score=24.89 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=34.0
Q ss_pred HccCCCchhhh-hcCCccchhhhcHHHHHHHHHHHHHHHHHHH
Q 046670 60 LKDIPDEDGDR-EFGIRTLSVILGKESVLWLCVYVLVIAYGAA 101 (153)
Q Consensus 60 ~KDi~DieGD~-~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~a 101 (153)
-.|+|.+++|. .+|-.|.-.++|...+...+-.++..+|-..
T Consensus 83 HDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 125 (299)
T PRK10581 83 HDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSIL 125 (299)
T ss_pred HcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHH
Confidence 78999777765 5899999999999998888887777666543
No 92
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=26.41 E-value=4e+02 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHccCCCchhhhh
Q 046670 50 KCCFCFVISVLKDIPDEDGDRE 71 (153)
Q Consensus 50 ~~~f~~~iai~KDi~DieGD~~ 71 (153)
+.+...+-+.++|+.|.|=|++
T Consensus 55 ~~~~~~a~~~~Nd~~D~~iD~~ 76 (290)
T PRK12870 55 ALATSAAGCVVNDLWDRDIDPQ 76 (290)
T ss_pred HHHHHHHHHHHHhHHHhccCCC
Confidence 3445666677999999999975
No 93
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=26.10 E-value=3e+02 Score=23.50 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=16.4
Q ss_pred chhhhcHHHHHHHHHHHHHHHHHHH
Q 046670 77 LSVILGKESVLWLCVYVLVIAYGAA 101 (153)
Q Consensus 77 l~i~lG~~~~~~i~~~ll~~~y~~a 101 (153)
+.-|+|+|++..++..+..+..+..
T Consensus 66 l~dr~G~r~~~~~~~~~~~~~~~~~ 90 (412)
T TIGR02332 66 MLAIIGARRWIAGIMVLWGIASTAT 90 (412)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHH
Confidence 3347899998877776665544433
No 94
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=26.07 E-value=2.3e+02 Score=24.13 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=23.3
Q ss_pred HHHHHHHHHccCCCchhhhhcCCcc--chhhhc---HHHHHHH
Q 046670 52 CFCFVISVLKDIPDEDGDREFGIRT--LSVILG---KESVLWL 89 (153)
Q Consensus 52 ~f~~~iai~KDi~DieGD~~~Gi~T--l~i~lG---~~~~~~i 89 (153)
+..-+-+.++|+-|.|=|++.. || =|+.-| ++.+...
T Consensus 53 l~~~a~~~~Nd~~D~~iD~~~~-RT~~RPL~sG~is~~~A~~~ 94 (291)
T PRK12886 53 GARTAAMGFNRLIDAEIDARNP-RTAGRAIPAGLISKGSAILF 94 (291)
T ss_pred HHHHHHHHHHhHHhhccCCCCC-CCCCCCCCCCCcCHHHHHHH
Confidence 3344455689999999999764 33 355555 5555443
No 95
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=25.88 E-value=2.7e+02 Score=24.22 Aligned_cols=47 Identities=19% Similarity=0.146 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHccCCCchhhhhcC---Cccchh-hhcHHHHHHHHH
Q 046670 45 FAVAIKCCFCFVISVLKDIPDEDGDREFG---IRTLSV-ILGKESVLWLCV 91 (153)
Q Consensus 45 f~t~f~~~f~~~iai~KDi~DieGD~~~G---i~Tl~i-~lG~~~~~~i~~ 91 (153)
..++-|...-..-..++|+-|.|=|++.- -|-+|. ++.++.+...+.
T Consensus 51 ~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~ 101 (300)
T PRK12876 51 LGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLT 101 (300)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 34444455555556699999999998876 343333 233455544443
No 96
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=25.49 E-value=4.4e+02 Score=22.72 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=26.6
Q ss_pred HHHHHHHHccCCCchhhhhc-----CCccch-hhhcHHHHHHHHHHHHHHHHH
Q 046670 53 FCFVISVLKDIPDEDGDREF-----GIRTLS-VILGKESVLWLCVYVLVIAYG 99 (153)
Q Consensus 53 f~~~iai~KDi~DieGD~~~-----Gi~Tl~-i~lG~~~~~~i~~~ll~~~y~ 99 (153)
+..+.++++|..|.|=|... +-|.++ -.+-+|.+.+.+..++.++.+
T Consensus 51 ~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~ 103 (317)
T PRK13387 51 FDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAI 103 (317)
T ss_pred HHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHH
Confidence 57778889999886543222 223332 234556777766655554433
No 97
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=25.29 E-value=3.7e+02 Score=21.79 Aligned_cols=40 Identities=8% Similarity=-0.061 Sum_probs=25.3
Q ss_pred HHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHH
Q 046670 51 CCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCV 91 (153)
Q Consensus 51 ~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~ 91 (153)
...++..+..-|.|+.+ +.-..+.|.|+..++--..++..
T Consensus 58 ~~i~i~~~~~~~~E~~~-~~~k~ll~~p~s~~~~~~aK~l~ 97 (248)
T TIGR03733 58 LLIGIVCGMVVEQEESA-GNFKNLLSTTKSKYKAYLSKLLL 97 (248)
T ss_pred HHHHHHHHHHHHHHHHh-ChHHHHhhcCCchhHHHHHHHHH
Confidence 34444445566777666 66667899998766655555443
No 98
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=25.08 E-value=3.2e+02 Score=23.08 Aligned_cols=45 Identities=7% Similarity=0.089 Sum_probs=27.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH
Q 046670 80 ILGKESVLWLCVYVLVIAYGAAVIVGLTSSPYLLSKLVTIISHSML 125 (153)
Q Consensus 80 ~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~~~~~~~~~~~H~il 125 (153)
|+|+|++...+..+..+..+....+.-... ....+.....+++..
T Consensus 70 r~G~r~~l~~~~~l~~~~~~~~~~a~~~~~-ll~~r~l~Gig~~~~ 114 (393)
T PRK09705 70 HVSERRSVAISLLLIAVGALMRELYPQSAL-LLSSALLGGVGIGII 114 (393)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHCcchHH-HHHHHHHHHhHHHHH
Confidence 689999999998888766654432211111 334455556666644
No 99
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=24.59 E-value=99 Score=28.54 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHccCCCch--------hhhhcCC
Q 046670 4 SSFLTTLYTVLERGLLLQFAY-FIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVISVLKDIPDED--------GDREFGI 74 (153)
Q Consensus 4 ~p~~Aa~cI~~vRg~ivnlg~-f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~iai~KDi~Die--------GD~~~Gi 74 (153)
+|+-|| ...+-|++.|+|. |+|. + -..+|..+ +-+.-+++++.-.- ||.+|-+ |--+.|
T Consensus 145 SPISAA--VV~~~a~l~~~g~~~l~l----l--~v~IPaTl-~g~~~~~l~~~~~g--keL~~Dp~yq~RL~~~~~~~~- 212 (436)
T COG2704 145 SPISAA--VVYMSAVLEPLGISYLTL----L--MVTIPSTL-LGVLLMALFVWFRG--KELDDDPEYQKRLSEGLIRDG- 212 (436)
T ss_pred CchHHH--HHHHHHHHhhcCcchhee----e--eEEecHHH-HHHHHHHHHHHHhc--ccccCCHHHHHHhhCcccccC-
Confidence 566666 5677888999998 6552 2 23444444 45555555554333 5555532 111110
Q ss_pred ccchhhh--cHHHHHHHHHHHHHHHHHHHHHHHhccCh-hH-HHHHHHHHHHHHHHHHH
Q 046670 75 RTLSVIL--GKESVLWLCVYVLVIAYGAAVIVGLTSSP-YL-LSKLVTIISHSMLATLL 129 (153)
Q Consensus 75 ~Tl~i~l--G~~~~~~i~~~ll~~~y~~ai~~g~~~~~-~~-~~~~~~~~~H~il~~~L 129 (153)
+=..++ -.++..+++.+++..+.+..++.|...+. .. -.+..+...|++....|
T Consensus 213 -~~~t~~~~~~~~~Ak~sv~iFL~a~~~vV~~a~~~s~r~~~~g~~~l~m~~~Iq~~ML 270 (436)
T COG2704 213 -DTGTKLEKELPKSAKLSVWIFLGAVVVVVLYAAAPSLRPGFVGKPLLSMTLAIQIFML 270 (436)
T ss_pred -CcccccccccCccchhhHHHHHHHHHHHHHHHhccccccccCCCCcccHHHHHHHHHH
Confidence 011111 12344567777777776666666655431 11 22334556666554443
No 100
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=24.43 E-value=78 Score=21.03 Aligned_cols=14 Identities=36% Similarity=0.973 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q 046670 18 LLLQFAYFIHIQKY 31 (153)
Q Consensus 18 ~ivnlg~f~h~~~~ 31 (153)
++|-.|+|+||..+
T Consensus 12 ~lv~~gy~~hmkry 25 (54)
T PF13260_consen 12 VLVVVGYFCHMKRY 25 (54)
T ss_pred HHHHHHHHHHHHHH
Confidence 46778999999875
No 101
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=24.41 E-value=3e+02 Score=22.80 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=13.3
Q ss_pred hhcHHHHHHHHHHHHHHHHH
Q 046670 80 ILGKESVLWLCVYVLVIAYG 99 (153)
Q Consensus 80 ~lG~~~~~~i~~~ll~~~y~ 99 (153)
|+|+|+...++..+..+.+.
T Consensus 64 r~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 64 RSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HhCChHHHHHHHHHHHHHHH
Confidence 57888887777655554443
No 102
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=24.26 E-value=4.6e+02 Score=22.52 Aligned_cols=45 Identities=13% Similarity=-0.013 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHccCCCchhhhhcC---Cccchh-hhcHHHHHHHHHHH
Q 046670 49 IKCCFCFVISVLKDIPDEDGDREFG---IRTLSV-ILGKESVLWLCVYV 93 (153)
Q Consensus 49 f~~~f~~~iai~KDi~DieGD~~~G---i~Tl~i-~lG~~~~~~i~~~l 93 (153)
-.++.+-+-+.++|..|.|=|++.. -|-+|- ++.++.+..++..+
T Consensus 55 g~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l 103 (306)
T PRK13362 55 GLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLAL 103 (306)
T ss_pred HHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 3445555777899999999998653 344443 34456565555433
No 103
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=23.87 E-value=3.3e+02 Score=20.70 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH
Q 046670 8 TTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITRTLMFAVAIKCCFCFVIS 58 (153)
Q Consensus 8 Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~~v~f~t~f~~~f~~~ia 58 (153)
...-.+++-=++||+=+|+||.+. ....|+---...++|+.+-.++-.
T Consensus 50 ~~i~~lA~iQi~vqLvyFlHM~~~---~eg~w~~~~~iFt~~i~vivvvGS 97 (111)
T COG3125 50 IIILGLAVIQILVHLVYFLHMNTK---SEGRWNMGALIFTIFIIVIVVVGS 97 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC---cccceehHHHHHHHHHHHHHHHHH
Confidence 344556666778999999998863 445555555555555555544433
No 104
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=23.44 E-value=4e+02 Score=21.49 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=8.3
Q ss_pred hhcHHHHHHHHHHH
Q 046670 80 ILGKESVLWLCVYV 93 (153)
Q Consensus 80 ~lG~~~~~~i~~~l 93 (153)
|+|+|++..++..+
T Consensus 261 r~g~~~~~~~~~~~ 274 (375)
T TIGR00899 261 RFGKRRLMLLAALA 274 (375)
T ss_pred HhcchhHHHHHHHH
Confidence 56777766655443
No 105
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=22.49 E-value=3.4e+02 Score=23.29 Aligned_cols=45 Identities=7% Similarity=-0.101 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHccCCCchhhhhcC---Cccchh-hhcHHHHHHHHHHHH
Q 046670 50 KCCFCFVISVLKDIPDEDGDREFG---IRTLSV-ILGKESVLWLCVYVL 94 (153)
Q Consensus 50 ~~~f~~~iai~KDi~DieGD~~~G---i~Tl~i-~lG~~~~~~i~~~ll 94 (153)
+.+...+-..++|+-|.|=|++.. -|-+|. ++.++.+...+..++
T Consensus 46 ~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~ 94 (286)
T PRK12895 46 AVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFI 94 (286)
T ss_pred HHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 334445555699999999998762 222322 334455555444443
No 106
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=22.28 E-value=2.4e+02 Score=18.58 Aligned_cols=19 Identities=21% Similarity=0.604 Sum_probs=11.4
Q ss_pred hhcHHHHHHHHHHHHHHHH
Q 046670 80 ILGKESVLWLCVYVLVIAY 98 (153)
Q Consensus 80 ~lG~~~~~~i~~~ll~~~y 98 (153)
++|+|+...++..+..+..
T Consensus 24 ~~g~~~~~~~~~~~~~~~~ 42 (141)
T TIGR00880 24 RFGRKPVLLVGLFIFVLST 42 (141)
T ss_pred hcchhHHHHHHHHHHHHHH
Confidence 4577777766655554443
No 107
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=22.09 E-value=3.7e+02 Score=20.59 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=9.1
Q ss_pred CChhhHHHHHH
Q 046670 139 SSKASTLSFYM 149 (153)
Q Consensus 139 ~sk~si~sfY~ 149 (153)
++++-++|||.
T Consensus 65 ~~~~~~~sFy~ 75 (126)
T PRK06099 65 KNSSKLTAFYR 75 (126)
T ss_pred chHHHHHHHHH
Confidence 67777999996
No 108
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=21.99 E-value=5.1e+02 Score=22.17 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=24.3
Q ss_pred HHHHHHHHccCCCchhhhhc------------CCccchh-hhcHHHHHHHHHHHHH
Q 046670 53 FCFVISVLKDIPDEDGDREF------------GIRTLSV-ILGKESVLWLCVYVLV 95 (153)
Q Consensus 53 f~~~iai~KDi~DieGD~~~------------Gi~Tl~i-~lG~~~~~~i~~~ll~ 95 (153)
.+.+ +.++|.-|.|=|++. .-|.+|- ++-+|.+..++..+..
T Consensus 54 ~~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~ 108 (297)
T PRK12871 54 FEAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAA 108 (297)
T ss_pred HHHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHH
Confidence 3444 489999999988642 1232222 4455666665554443
No 109
>PF15184 TOMM6: Mitochondrial import receptor subunit TOM6 homolog
Probab=21.53 E-value=67 Score=22.19 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 046670 15 ERGLLLQFAYFIHIQK 30 (153)
Q Consensus 15 vRg~ivnlg~f~h~~~ 30 (153)
-|-.|+|+|+|..=.+
T Consensus 34 rrnlilnlglfaagvw 49 (66)
T PF15184_consen 34 RRNLILNLGLFAAGVW 49 (66)
T ss_pred HHHHHHHhhHHhhhHH
Confidence 4789999999965433
No 110
>COG2246 Predicted membrane protein [Function unknown]
Probab=20.55 E-value=3.9e+02 Score=20.34 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch
Q 046670 8 TTLYTVLERGLLLQFAYFIHIQKYVLGRPIAITR 41 (153)
Q Consensus 8 Aa~cI~~vRg~ivnlg~f~h~~~~~~~~~~~~~~ 41 (153)
.=.|+.++=|.+||+++|.-.... ++.|...+.
T Consensus 14 lrF~~VG~~~t~V~~~~~~ll~~~-~~~~~~~A~ 46 (139)
T COG2246 14 LRFAIVGGLGTLVDFAVLWLLVKA-LGVPYALAN 46 (139)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHh-cccchHHHH
Confidence 345788889999999998766653 454444333
Done!