Query 046670
Match_columns 153
No_of_seqs 166 out of 327
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:08:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kra_B Geranyl diphosphate syn 58.6 47 0.0016 26.9 8.3 51 50-100 69-119 (274)
2 1rtr_A Geranyltranstransferase 41.0 1.2E+02 0.0041 24.7 8.1 55 46-100 67-122 (301)
3 2hdi_B Colicin-IA; outer membr 39.6 7.2 0.00025 28.0 0.4 19 53-71 69-92 (113)
4 1pw4_A Glycerol-3-phosphate tr 34.3 1.7E+02 0.0057 22.9 7.7 23 80-102 88-110 (451)
5 3m0g_A Farnesyl diphosphate sy 34.0 1.9E+02 0.0065 23.5 8.5 53 46-98 66-119 (297)
6 4gc0_A D-xylose-proton symport 32.6 1.6E+02 0.0056 23.5 7.5 18 80-97 81-98 (491)
7 3p8l_A Geranyltranstransferase 31.4 2.2E+02 0.0074 23.3 8.6 58 43-100 73-131 (302)
8 2nr1_A NR1 M2, M2; receptor, s 30.4 59 0.002 18.1 3.1 21 2-24 5-25 (27)
9 3o7q_A L-fucose-proton symport 29.4 2E+02 0.0069 22.4 8.0 70 80-149 87-159 (438)
10 2ftz_A Geranyltranstransferase 26.7 2.5E+02 0.0087 22.6 8.5 55 46-100 71-126 (284)
11 4f62_A Geranyltranstransferase 25.5 2.8E+02 0.0097 22.8 8.8 54 46-99 70-124 (317)
12 3pde_A Farnesyl-diphosphate sy 24.0 3E+02 0.01 22.6 8.1 51 50-100 79-130 (309)
13 3lom_A Geranyltranstransferase 23.6 3.1E+02 0.01 22.5 8.1 56 47-102 76-132 (313)
14 3m0g_A Farnesyl diphosphate sy 23.3 97 0.0033 25.3 4.6 37 59-95 214-261 (297)
15 2h8o_A Geranyltranstransferase 22.0 41 0.0014 28.1 2.1 45 46-90 247-302 (335)
16 3lsn_A Geranyltranstransferase 21.9 3.3E+02 0.011 22.2 8.2 53 48-100 71-124 (304)
17 3p8r_A Geranyltranstransferase 21.0 43 0.0015 27.5 2.0 36 60-95 228-274 (302)
18 3uca_A Geranyltranstransferase 20.9 3.6E+02 0.012 22.3 8.2 54 49-102 102-156 (324)
19 3p8r_A Geranyltranstransferase 20.7 2E+02 0.0069 23.4 6.0 54 47-100 76-130 (302)
20 3ts7_A Geranyltranstransferase 20.5 47 0.0016 27.7 2.2 45 46-90 214-269 (324)
No 1
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=58.61 E-value=47 Score=26.87 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHHH
Q 046670 50 KCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYGA 100 (153)
Q Consensus 50 ~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ 100 (153)
+=++-...=+-.|+|+.+.|...|-.|.=.++|...+...+-.++..++-.
T Consensus 69 iEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 119 (274)
T 3kra_B 69 IHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFEL 119 (274)
T ss_dssp HHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 334444444589999555576799999999999998888777777766543
No 2
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=40.96 E-value=1.2e+02 Score=24.70 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHccCCCchhhh-hcCCccchhhhcHHHHHHHHHHHHHHHHHH
Q 046670 46 AVAIKCCFCFVISVLKDIPDEDGDR-EFGIRTLSVILGKESVLWLCVYVLVIAYGA 100 (153)
Q Consensus 46 ~t~f~~~f~~~iai~KDi~DieGD~-~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ 100 (153)
+.+-+=++-...=+-.|+|++++|. ..|-.|.-.++|...+...+-.++.-++-.
T Consensus 67 ~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~ 122 (301)
T 1rtr_A 67 SAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFEL 122 (301)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 3333444444445589999988875 588899999999998888887777765543
No 3
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=39.64 E-value=7.2 Score=27.97 Aligned_cols=19 Identities=26% Similarity=0.578 Sum_probs=13.1
Q ss_pred HHHHHHHHcc-----CCCchhhhh
Q 046670 53 FCFVISVLKD-----IPDEDGDRE 71 (153)
Q Consensus 53 f~~~iai~KD-----i~DieGD~~ 71 (153)
...-.+|..| -||+|||++
T Consensus 69 ldy~~nil~drnpvvtedvegdkk 92 (113)
T 2hdi_B 69 LDYKRNILNDRNPVVTEDVEGDKK 92 (113)
T ss_dssp HHHHHHTSCCCCSCCSSCHHHHHH
T ss_pred hhhhhhhhcCCCCeeecccccchh
Confidence 3444566666 489999986
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=34.28 E-value=1.7e+02 Score=22.91 Aligned_cols=23 Identities=4% Similarity=-0.275 Sum_probs=16.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHH
Q 046670 80 ILGKESVLWLCVYVLVIAYGAAV 102 (153)
Q Consensus 80 ~lG~~~~~~i~~~ll~~~y~~ai 102 (153)
|+|+|++..++..+..+..+...
T Consensus 88 r~g~r~~l~~~~~~~~~~~~~~~ 110 (451)
T 1pw4_A 88 RSNPRVFLPAGLILAAAVMLFMG 110 (451)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHHHHH
Confidence 57999988888777666554443
No 5
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=34.04 E-value=1.9e+02 Score=23.55 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHccCCCchhhh-hcCCccchhhhcHHHHHHHHHHHHHHHH
Q 046670 46 AVAIKCCFCFVISVLKDIPDEDGDR-EFGIRTLSVILGKESVLWLCVYVLVIAY 98 (153)
Q Consensus 46 ~t~f~~~f~~~iai~KDi~DieGD~-~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y 98 (153)
+.+-+=+.-...=+-.|+|.+++|. ..|-.|.-.++|...+...+-.++..++
T Consensus 66 ~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~ 119 (297)
T 3m0g_A 66 AALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAF 119 (297)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHH
Confidence 3333444444445589999887765 5788999999999888777777766554
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=32.57 E-value=1.6e+02 Score=23.49 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=14.1
Q ss_pred hhcHHHHHHHHHHHHHHH
Q 046670 80 ILGKESVLWLCVYVLVIA 97 (153)
Q Consensus 80 ~lG~~~~~~i~~~ll~~~ 97 (153)
|+|||++..++..+..+.
T Consensus 81 r~GRk~~l~~~~~l~~i~ 98 (491)
T 4gc0_A 81 RFGRRDSLKIAAVLFFIS 98 (491)
T ss_dssp HTCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 699999999887766543
No 7
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=31.36 E-value=2.2e+02 Score=23.33 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCchhhhh-cCCccchhhhcHHHHHHHHHHHHHHHHHH
Q 046670 43 LMFAVAIKCCFCFVISVLKDIPDEDGDRE-FGIRTLSVILGKESVLWLCVYVLVIAYGA 100 (153)
Q Consensus 43 v~f~t~f~~~f~~~iai~KDi~DieGD~~-~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ 100 (153)
..-+.+-+=+.-...=+-.|+|++++|.. .|-.|.-.++|...+...+-.++..++-.
T Consensus 73 ~~~~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~ 131 (302)
T 3p8l_A 73 DYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQL 131 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHH
Confidence 33333344444444555899999988864 69999999999998888887777766543
No 8
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=30.36 E-value=59 Score=18.12 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=14.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 046670 2 KRSSFLTTLYTVLERGLLLQFAY 24 (153)
Q Consensus 2 KR~p~~Aa~cI~~vRg~ivnlg~ 24 (153)
|++-+.+|+| .++|+++|.|.
T Consensus 5 ~~~~l~aa~w--F~WGvllnsgi 25 (27)
T 2nr1_A 5 DALTLSSAMW--FSWGVLLNSGI 25 (27)
T ss_dssp CHHHHHHHHH--HHHHHHHHHHH
T ss_pred cceehhhhHH--HhhHhheeccc
Confidence 4556667755 57899998874
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=29.36 E-value=2e+02 Score=22.37 Aligned_cols=70 Identities=9% Similarity=-0.077 Sum_probs=35.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHhccChh--HHHHHHHHHHHHHHH-HHHHHHHhhccCCChhhHHHHHH
Q 046670 80 ILGKESVLWLCVYVLVIAYGAAVIVGLTSSPY--LLSKLVTIISHSMLA-TLLWHQAQTVDLSSKASTLSFYM 149 (153)
Q Consensus 80 ~lG~~~~~~i~~~ll~~~y~~ai~~g~~~~~~--~~~~~~~~~~H~il~-~~Lw~r~~~vdl~sk~si~sfY~ 149 (153)
|+|+|++..++..+..+..+.....+...+.. ...+.+...+.+..- ...-.-++..+.+++....+.++
T Consensus 87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 159 (438)
T 3o7q_A 87 KLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQ 159 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHH
Confidence 68999999988888777666554334433311 122233333333321 22223344444455554445544
No 10
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=26.69 E-value=2.5e+02 Score=22.64 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHccCCCchhhh-hcCCccchhhhcHHHHHHHHHHHHHHHHHH
Q 046670 46 AVAIKCCFCFVISVLKDIPDEDGDR-EFGIRTLSVILGKESVLWLCVYVLVIAYGA 100 (153)
Q Consensus 46 ~t~f~~~f~~~iai~KDi~DieGD~-~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ 100 (153)
+.+-+=++-...=+-.|+|.+++|. .+|-.|.-.++|...+...+-.++..++-.
T Consensus 71 ~A~avEliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~ 126 (284)
T 2ftz_A 71 VAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQ 126 (284)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 3333444444444589998888875 588899999999998888887777765543
No 11
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=25.48 E-value=2.8e+02 Score=22.82 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHccCCCchhhh-hcCCccchhhhcHHHHHHHHHHHHHHHHH
Q 046670 46 AVAIKCCFCFVISVLKDIPDEDGDR-EFGIRTLSVILGKESVLWLCVYVLVIAYG 99 (153)
Q Consensus 46 ~t~f~~~f~~~iai~KDi~DieGD~-~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~ 99 (153)
+.+-+=+.-...=+-.|+|.+++|. ..|-.|.-.++|...+...+-.++..++-
T Consensus 70 ~A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 124 (317)
T 4f62_A 70 SAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFE 124 (317)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHH
Confidence 3333344444444589999777765 57999999999999887777777765543
No 12
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=24.03 E-value=3e+02 Score=22.59 Aligned_cols=51 Identities=20% Similarity=0.092 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHccCCCchhhhh-cCCccchhhhcHHHHHHHHHHHHHHHHHH
Q 046670 50 KCCFCFVISVLKDIPDEDGDRE-FGIRTLSVILGKESVLWLCVYVLVIAYGA 100 (153)
Q Consensus 50 ~~~f~~~iai~KDi~DieGD~~-~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ 100 (153)
+=++-...=+-.|+|.+++|.. .|-.|.=.++|...+...+-.++..+|-.
T Consensus 79 iEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 130 (309)
T 3pde_A 79 LELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQW 130 (309)
T ss_dssp HHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHH
Confidence 3334444445899998888764 69999999999998877777777665543
No 13
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=23.60 E-value=3.1e+02 Score=22.52 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHccCCCchhhh-hcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 046670 47 VAIKCCFCFVISVLKDIPDEDGDR-EFGIRTLSVILGKESVLWLCVYVLVIAYGAAV 102 (153)
Q Consensus 47 t~f~~~f~~~iai~KDi~DieGD~-~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai 102 (153)
.+-+=++-...=+-.|+|.+++|. ..|-.|.-.++|...+...+-.++..+|-...
T Consensus 76 A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~ 132 (313)
T 3lom_A 76 AAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLL 132 (313)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 333344444444589999887765 57999999999999888888877776654433
No 14
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=23.33 E-value=97 Score=25.35 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=22.2
Q ss_pred HHccCCCchhh-----------hhcCCccchhhhcHHHHHHHHHHHHH
Q 046670 59 VLKDIPDEDGD-----------REFGIRTLSVILGKESVLWLCVYVLV 95 (153)
Q Consensus 59 i~KDi~DieGD-----------~~~Gi~Tl~i~lG~~~~~~i~~~ll~ 95 (153)
|..|+-|+.|| -+.|-.|+|+.+|.+++...+--...
T Consensus 214 I~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~ 261 (297)
T 3m0g_A 214 IADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVA 261 (297)
T ss_dssp HHTTCC---------------------CCHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 38899999885 45789999999999998877665554
No 15
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=21.99 E-value=41 Score=28.14 Aligned_cols=45 Identities=16% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHccCCCchhhhh-----------cCCccchhhhcHHHHHHHH
Q 046670 46 AVAIKCCFCFVISVLKDIPDEDGDRE-----------FGIRTLSVILGKESVLWLC 90 (153)
Q Consensus 46 ~t~f~~~f~~~iai~KDi~DieGD~~-----------~Gi~Tl~i~lG~~~~~~i~ 90 (153)
+.-|-.-+...--+..|+-|+.||.+ .|-.|+|+.+|.+++...+
T Consensus 247 l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a 302 (335)
T 2h8o_A 247 LRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKL 302 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHH
No 16
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=21.87 E-value=3.3e+02 Score=22.20 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHccCCCchhhh-hcCCccchhhhcHHHHHHHHHHHHHHHHHH
Q 046670 48 AIKCCFCFVISVLKDIPDEDGDR-EFGIRTLSVILGKESVLWLCVYVLVIAYGA 100 (153)
Q Consensus 48 ~f~~~f~~~iai~KDi~DieGD~-~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ 100 (153)
+-+=++-...=+-.|+|.+++|. .+|-.|.-.++|...+...+-.++..+|-.
T Consensus 71 ~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~ 124 (304)
T 3lsn_A 71 CAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSA 124 (304)
T ss_dssp HHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHH
Confidence 33344444444589999777775 478899999999998888887777665543
No 17
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=21.03 E-value=43 Score=27.53 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=25.1
Q ss_pred HccCCCchhh-----------hhcCCccchhhhcHHHHHHHHHHHHH
Q 046670 60 LKDIPDEDGD-----------REFGIRTLSVILGKESVLWLCVYVLV 95 (153)
Q Consensus 60 ~KDi~DieGD-----------~~~Gi~Tl~i~lG~~~~~~i~~~ll~ 95 (153)
..|+-|+.|| -+.|-.|+|+.+|.+++...+--...
T Consensus 228 ~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~ 274 (302)
T 3p8r_A 228 QDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQ 274 (302)
T ss_dssp HHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 6777777665 46799999999999998877665554
No 18
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=20.87 E-value=3.6e+02 Score=22.29 Aligned_cols=54 Identities=19% Similarity=0.080 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHccCCCchhhh-hcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 046670 49 IKCCFCFVISVLKDIPDEDGDR-EFGIRTLSVILGKESVLWLCVYVLVIAYGAAV 102 (153)
Q Consensus 49 f~~~f~~~iai~KDi~DieGD~-~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai 102 (153)
-+=++-...=+-.|+|.+++|. ..|-.|.-.++|...+...+-.++..++-...
T Consensus 102 aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~ 156 (324)
T 3uca_A 102 AIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILV 156 (324)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 3344444445589999998876 47999999999999888888888776654433
No 19
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=20.72 E-value=2e+02 Score=23.42 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHccCCCchhhh-hcCCccchhhhcHHHHHHHHHHHHHHHHHH
Q 046670 47 VAIKCCFCFVISVLKDIPDEDGDR-EFGIRTLSVILGKESVLWLCVYVLVIAYGA 100 (153)
Q Consensus 47 t~f~~~f~~~iai~KDi~DieGD~-~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ 100 (153)
.+-+=++-...=+-.|+|.+++|. ..|-.|.-.++|...+...+-.++..++-.
T Consensus 76 A~aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~ 130 (302)
T 3p8r_A 76 ASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTI 130 (302)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHH
Confidence 333344444444589998777775 478899999999998888777777655543
No 20
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=20.50 E-value=47 Score=27.72 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHccCCCchh-----------hhhcCCccchhhhcHHHHHHHH
Q 046670 46 AVAIKCCFCFVISVLKDIPDEDG-----------DREFGIRTLSVILGKESVLWLC 90 (153)
Q Consensus 46 ~t~f~~~f~~~iai~KDi~DieG-----------D~~~Gi~Tl~i~lG~~~~~~i~ 90 (153)
+.-|-.-+...--|..|+-|+.| |.+.|-.|+|+.+|.+++...+
T Consensus 214 l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a 269 (324)
T 3ts7_A 214 LDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKA 269 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHH
Done!