Query 046670
Match_columns 153
No_of_seqs 166 out of 327
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 05:08:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046670.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046670hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 47.2 41 0.003 25.0 8.1 52 48-99 68-120 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 47.0 21 0.0015 27.0 6.3 52 51-102 74-126 (299)
3 d1b24a2 d.95.2.1 (A:100-179) D 30.1 2.3 0.00017 27.6 -1.7 16 57-72 8-23 (80)
4 d1rqja_ a.128.1.1 (A:) Farnesy 22.2 12 0.00088 28.4 0.8 37 54-90 214-263 (299)
5 d1rtra_ a.128.1.1 (A:) Farnesy 21.9 10 0.00074 28.7 0.3 29 60-88 216-255 (290)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 17.5 1.6E+02 0.012 20.7 7.4 23 78-100 83-105 (447)
7 d1v4ea_ a.128.1.1 (A:) Octopre 11.5 2.6E+02 0.019 20.1 8.4 49 50-99 62-110 (280)
8 d2crga1 a.4.1.3 (A:8-64) Metas 10.9 50 0.0037 19.0 1.4 17 136-153 31-47 (57)
9 d2q80a1 a.128.1.1 (A:6-296) Ge 8.2 1.6E+02 0.011 21.5 3.8 58 41-99 39-96 (291)
10 d2npta1 d.15.2.2 (A:4-108) Mit 6.4 43 0.0031 22.5 -0.4 10 62-71 58-67 (105)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=47.17 E-value=41 Score=25.02 Aligned_cols=52 Identities=17% Similarity=0.111 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHccCCCchhh-hhcCCccchhhhcHHHHHHHHHHHHHHHHH
Q 046670 48 AIKCCFCFVISVLKDIPDEDGD-REFGIRTLSVILGKESVLWLCVYVLVIAYG 99 (153)
Q Consensus 48 ~f~~~f~~~iai~KDi~DieGD-~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~ 99 (153)
+-+=++-...=+--|++|+++| ..+|-.|.-.++|.+.+...+-.++..++-
T Consensus 68 ~avEllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~ 120 (290)
T d1rtra_ 68 IALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFE 120 (290)
T ss_dssp HHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHH
Confidence 3334444455558899998776 588999999999999888877777665544
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=46.96 E-value=21 Score=26.98 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=39.5
Q ss_pred HHHHHHHHHHccCCCchhh-hhcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 046670 51 CCFCFVISVLKDIPDEDGD-REFGIRTLSVILGKESVLWLCVYVLVIAYGAAV 102 (153)
Q Consensus 51 ~~f~~~iai~KDi~DieGD-~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~~ai 102 (153)
=++-...-+--|++|.+.| ..+|..|.-.++|.+.+...+-.++..++-...
T Consensus 74 EllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~ 126 (299)
T d1rqja_ 74 ECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILS 126 (299)
T ss_dssp HHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHHH
Confidence 3333444447899999884 799999999999999988888877776665544
No 3
>d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
Probab=30.08 E-value=2.3 Score=27.58 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=13.7
Q ss_pred HHHHccCCCchhhhhc
Q 046670 57 ISVLKDIPDEDGDREF 72 (153)
Q Consensus 57 iai~KDi~DieGD~~~ 72 (153)
+|++|...|-|||+..
T Consensus 8 ~AFI~GLYdAEGDKtg 23 (80)
T d1b24a2 8 IAFIKGLYVAEGDKTL 23 (80)
T ss_dssp HHHHHHHHHHHSCTTC
T ss_pred HHHHHhhhhccccchh
Confidence 6789999999999854
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=22.25 E-value=12 Score=28.38 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=26.0
Q ss_pred HHHHHH--HccCCCchh-----------hhhcCCccchhhhcHHHHHHHH
Q 046670 54 CFVISV--LKDIPDEDG-----------DREFGIRTLSVILGKESVLWLC 90 (153)
Q Consensus 54 ~~~iai--~KDi~DieG-----------D~~~Gi~Tl~i~lG~~~~~~i~ 90 (153)
.+|+++ ..|+.|+.| |-+.|-.|+|+.+|.+++..-.
T Consensus 214 ~lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~ 263 (299)
T d1rqja_ 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHH
Confidence 344444 666776654 6667899999999998865543
No 5
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=21.92 E-value=10 Score=28.70 Aligned_cols=29 Identities=31% Similarity=0.260 Sum_probs=17.6
Q ss_pred HccCCCchh-----------hhhcCCccchhhhcHHHHHH
Q 046670 60 LKDIPDEDG-----------DREFGIRTLSVILGKESVLW 88 (153)
Q Consensus 60 ~KDi~DieG-----------D~~~Gi~Tl~i~lG~~~~~~ 88 (153)
..|+.|+.| |-+.|-.|+|+.+|.+.+..
T Consensus 216 ~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~ 255 (290)
T d1rtra_ 216 KDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAED 255 (290)
T ss_dssp HHHHHHHHHHHCC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHH
Confidence 677777665 55679999999999877543
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=17.46 E-value=1.6e+02 Score=20.72 Aligned_cols=23 Identities=9% Similarity=-0.227 Sum_probs=15.8
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHH
Q 046670 78 SVILGKESVLWLCVYVLVIAYGA 100 (153)
Q Consensus 78 ~i~lG~~~~~~i~~~ll~~~y~~ 100 (153)
.=|+|+|++..++..+..+..+.
T Consensus 83 ~Dr~g~r~~~~~~~~~~~~~~~~ 105 (447)
T d1pw4a_ 83 SDRSNPRVFLPAGLILAAAVMLF 105 (447)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHHHHhh
Confidence 33689999988877666554443
No 7
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=11.52 E-value=2.6e+02 Score=20.12 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHH
Q 046670 50 KCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYG 99 (153)
Q Consensus 50 ~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~ 99 (153)
+=++-...-+-.|+.| +.|..+|..|.-.++|...+...+-.++..++-
T Consensus 62 iEliH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~~ 110 (280)
T d1v4ea_ 62 LELVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 110 (280)
T ss_dssp HHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhhh
Confidence 3444444445799988 678899999999999999988777766665543
No 8
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.91 E-value=50 Score=19.03 Aligned_cols=17 Identities=29% Similarity=0.753 Sum_probs=13.4
Q ss_pred ccCCChhhHHHHHHhhcC
Q 046670 136 VDLSSKASTLSFYMFIWK 153 (153)
Q Consensus 136 vdl~sk~si~sfY~fIWk 153 (153)
+.-.|.+++.+||- .||
T Consensus 31 v~~Ks~~~~v~fYY-~~K 47 (57)
T d2crga1 31 LPWKSLTSIIEYYY-MWK 47 (57)
T ss_dssp CSSSCHHHHHHHHH-HHH
T ss_pred cCCCCHHHHHHHHH-HHh
Confidence 56788999999995 565
No 9
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.20 E-value=1.6e+02 Score=21.53 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHccCCCchhhhhcCCccchhhhcHHHHHHHHHHHHHHHHH
Q 046670 41 RTLMFAVAIKCCFCFVISVLKDIPDEDGDREFGIRTLSVILGKESVLWLCVYVLVIAYG 99 (153)
Q Consensus 41 ~~v~f~t~f~~~f~~~iai~KDi~DieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~y~ 99 (153)
..+.-+.+-+=++-...-+-.|++| +.|..+|..|.-.++|...+...+-.++..++-
T Consensus 39 ~~~~~~a~aiEllH~asLihDDi~D-~~~~RRg~pt~~~~~G~~~Ail~gd~l~~~a~~ 96 (291)
T d2q80a1 39 DKLQIIIEVTEMLHNASLLIDDIED-NSKLRRGFPVAHSIYGIPSVINSANYVYFLGLE 96 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc-CcccccCCCccccccchhhhhhHHHHHHHHHHH
Confidence 3444444444555555555789975 346778999999999999887777777665543
No 10
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.37 E-value=43 Score=22.47 Aligned_cols=10 Identities=60% Similarity=0.926 Sum_probs=8.0
Q ss_pred cCCCchhhhh
Q 046670 62 DIPDEDGDRE 71 (153)
Q Consensus 62 Di~DieGD~~ 71 (153)
+-||.+|||.
T Consensus 58 EYEDEdGDRI 67 (105)
T d2npta1 58 EYEDEDGDRI 67 (105)
T ss_dssp EEECTTSCEE
T ss_pred eeccccCCEe
Confidence 4689999984
Done!