Query 046673
Match_columns 447
No_of_seqs 193 out of 1820
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:18:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.5E-71 5.5E-76 562.1 43.8 411 13-446 5-431 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 1E-57 2.2E-62 464.9 37.3 311 86-446 109-451 (482)
3 KOG1339 Aspartyl protease [Pos 100.0 2.6E-56 5.7E-61 449.9 36.0 335 93-444 43-397 (398)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 3.7E-56 8E-61 438.5 30.2 300 93-440 3-325 (325)
5 cd05478 pepsin_A Pepsin A, asp 100.0 3.8E-56 8.2E-61 436.8 29.8 300 89-440 2-317 (317)
6 cd05486 Cathespin_E Cathepsin 100.0 7.1E-56 1.5E-60 434.6 28.2 295 97-440 1-316 (316)
7 cd05472 cnd41_like Chloroplast 100.0 4.8E-55 1E-59 425.7 33.1 291 96-443 1-299 (299)
8 cd06096 Plasmepsin_5 Plasmepsi 100.0 5.2E-55 1.1E-59 430.1 31.3 297 95-444 2-326 (326)
9 cd05477 gastricsin Gastricsins 100.0 5.4E-55 1.2E-59 428.9 31.0 297 94-441 1-318 (318)
10 cd05487 renin_like Renin stimu 100.0 2.5E-54 5.4E-59 425.4 30.4 299 93-441 5-326 (326)
11 cd05488 Proteinase_A_fungi Fun 100.0 3E-54 6.5E-59 423.7 28.7 295 93-440 7-320 (320)
12 cd05485 Cathepsin_D_like Cathe 100.0 5.5E-54 1.2E-58 423.2 30.2 300 92-440 7-329 (329)
13 cd06098 phytepsin Phytepsin, a 100.0 9.3E-54 2E-58 419.6 30.8 290 92-440 6-317 (317)
14 PTZ00147 plasmepsin-1; Provisi 100.0 2.9E-53 6.3E-58 429.1 34.4 306 85-442 127-450 (453)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 2.8E-52 6E-57 421.2 33.1 304 86-442 127-449 (450)
16 cd05489 xylanase_inhibitor_I_l 100.0 7.5E-52 1.6E-56 411.0 31.4 315 103-441 2-361 (362)
17 cd05473 beta_secretase_like Be 100.0 3.3E-51 7.2E-56 409.1 30.9 311 95-446 2-350 (364)
18 cd05476 pepsin_A_like_plant Ch 100.0 1.1E-49 2.3E-54 381.3 29.5 256 96-443 1-265 (265)
19 cd05475 nucellin_like Nucellin 100.0 1.1E-49 2.5E-54 382.5 29.6 257 95-443 1-273 (273)
20 cd06097 Aspergillopepsin_like 100.0 5.1E-50 1.1E-54 386.2 25.0 266 97-440 1-278 (278)
21 PF00026 Asp: Eukaryotic aspar 100.0 3.7E-49 8E-54 387.2 19.5 297 96-441 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 5.1E-48 1.1E-52 375.6 26.9 271 96-441 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 1.2E-44 2.7E-49 349.2 27.6 267 97-440 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 2.8E-30 6E-35 228.4 15.0 153 97-263 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 8.2E-26 1.8E-30 199.6 14.7 150 286-440 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 1.1E-23 2.5E-28 173.5 11.7 108 99-227 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.0 2.4E-05 5.1E-10 62.1 7.1 93 96-229 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.4 0.013 2.9E-07 48.8 7.4 96 93-229 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 95.9 0.063 1.4E-06 41.5 8.4 89 100-229 2-90 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.4 0.043 9.3E-07 45.9 6.0 94 319-438 29-124 (124)
31 PF08284 RVP_2: Retroviral asp 94.0 0.11 2.5E-06 44.0 5.4 98 319-440 34-131 (135)
32 cd05479 RP_DDI RP_DDI; retrope 93.7 0.38 8.3E-06 40.1 8.0 93 93-229 13-107 (124)
33 PF11925 DUF3443: Protein of u 92.4 2.5 5.4E-05 41.6 12.4 54 175-230 83-149 (370)
34 cd05484 retropepsin_like_LTR_2 89.9 0.38 8.3E-06 37.6 3.5 28 97-126 1-28 (91)
35 cd06095 RP_RTVL_H_like Retrope 87.1 3.3 7.2E-05 31.9 7.1 21 319-339 11-31 (86)
36 PF12384 Peptidase_A2B: Ty3 tr 85.4 3.1 6.6E-05 36.1 6.5 84 318-425 46-129 (177)
37 TIGR02281 clan_AA_DTGA clan AA 85.1 2 4.2E-05 35.7 5.2 35 285-339 10-44 (121)
38 PF13975 gag-asp_proteas: gag- 85.0 1.5 3.3E-05 32.6 4.1 33 93-127 5-37 (72)
39 COG3577 Predicted aspartyl pro 83.7 4.1 8.9E-05 36.7 6.7 87 87-206 95-182 (215)
40 PF13650 Asp_protease_2: Aspar 80.9 2.1 4.6E-05 32.7 3.6 21 319-339 11-31 (90)
41 PF13975 gag-asp_proteas: gag- 76.9 5.1 0.00011 29.7 4.4 21 319-339 21-41 (72)
42 cd05484 retropepsin_like_LTR_2 76.8 3.6 7.8E-05 32.0 3.8 21 320-340 14-34 (91)
43 PF00077 RVP: Retroviral aspar 76.6 4.1 8.8E-05 32.1 4.1 27 98-126 7-33 (100)
44 TIGR03698 clan_AA_DTGF clan AA 74.5 5.7 0.00012 32.1 4.5 24 413-436 84-107 (107)
45 cd05483 retropepsin_like_bacte 72.9 6.3 0.00014 30.3 4.3 21 319-339 15-35 (96)
46 PF09668 Asp_protease: Asparty 68.7 10 0.00022 31.6 4.7 20 320-339 38-57 (124)
47 cd05482 HIV_retropepsin_like R 68.0 7.1 0.00015 30.3 3.5 25 100-126 2-26 (87)
48 cd06095 RP_RTVL_H_like Retrope 66.5 7.3 0.00016 29.9 3.3 24 101-126 3-26 (86)
49 PF02160 Peptidase_A3: Caulifl 64.5 12 0.00025 34.0 4.6 27 413-440 91-117 (201)
50 PF00077 RVP: Retroviral aspar 56.8 10 0.00022 29.8 2.7 17 319-335 18-34 (100)
51 PF12384 Peptidase_A2B: Ty3 tr 51.5 20 0.00043 31.3 3.6 28 98-125 34-61 (177)
52 COG3577 Predicted aspartyl pro 48.0 57 0.0012 29.6 6.1 35 285-339 104-138 (215)
53 cd05481 retropepsin_like_LTR_1 47.4 21 0.00046 27.9 3.1 22 319-340 12-33 (93)
54 COG5550 Predicted aspartyl pro 47.1 13 0.00027 30.8 1.7 21 320-340 29-50 (125)
55 PLN03207 stomagen; Provisional 34.3 35 0.00075 26.8 2.2 27 3-29 7-33 (113)
56 KOG0012 DNA damage inducible p 32.4 2.3E+02 0.0049 28.1 7.9 38 405-442 308-347 (380)
57 PF09668 Asp_protease: Asparty 30.9 85 0.0019 26.1 4.2 37 93-131 21-57 (124)
58 TIGR03698 clan_AA_DTGF clan AA 27.4 78 0.0017 25.4 3.4 26 99-124 2-32 (107)
59 PRK02710 plastocyanin; Provisi 27.2 87 0.0019 25.7 3.8 35 3-38 1-35 (119)
60 PF15240 Pro-rich: Proline-ric 21.0 56 0.0012 28.9 1.5 13 19-31 9-21 (179)
61 cd05475 nucellin_like Nucellin 20.8 1.3E+02 0.0027 28.5 4.1 33 94-126 156-194 (273)
62 PRK14864 putative biofilm stre 20.5 4.4E+02 0.0096 21.2 6.4 24 1-24 1-24 (104)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.5e-71 Score=562.09 Aligned_cols=411 Identities=31% Similarity=0.555 Sum_probs=339.0
Q ss_pred HHHHHHHhhhhhccccCCCCeeEEEEeeCCCCCC----CCCChhHHHHHHHHHhHHHHHhhhhhcccCCCCCCCCCCccc
Q 046673 13 FFCCLALLSQSHFTASKSDGLIRLQLIPVDSLEP----QNLNESQKFHGLVEKSKRRASYLKSISTLNSSVLNPSDTIPI 88 (447)
Q Consensus 13 ~~~~l~~~~~~~~~~a~~~~~~~l~l~~~~~~~~----~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 88 (447)
+.+||..+..+++..++..++ +++|+||++++. ++.+..++++++++|+.+|++++.++... ...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-------~~~~~~ 76 (431)
T PLN03146 5 LALCLFSFSELSAAEAPKGGF-TVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS-------PNDPQS 76 (431)
T ss_pred HHHHHHHHhhhhhccccCCce-EEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc-------CCcccc
Confidence 344455555566666788899 999999998762 35566799999999999999998654321 124445
Q ss_pred ceeccCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCC-CCC-
Q 046673 89 TMNTQSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREF-SCV- 166 (447)
Q Consensus 89 ~l~~~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~-~C~- 166 (447)
++...+++|+++|.||||||++.|++||||+++||+|.+|..|..+.++.|||++|+||+.+.|.++.|..++.. .|.
T Consensus 77 ~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~ 156 (431)
T PLN03146 77 DLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSD 156 (431)
T ss_pred CcccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCC
Confidence 566688999999999999999999999999999999999999999999999999999999999999999887654 466
Q ss_pred CCceeeeEecCCCCeeeEEEEEEEEEecCC-----CcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCChhhhhhhcc
Q 046673 167 NDVCVYDERYANGASTKGIASEDLFFFFPD-----SIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLSLISQIGGD 241 (447)
Q Consensus 167 ~~~~~~~~~Y~dg~~~~G~~~~D~v~i~~~-----~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~ 241 (447)
++.|.|.+.|+||+.+.|.+++|+|+|++. +++ ++.|||++...+. |. ...+||||||+++.|+++|+...
T Consensus 157 ~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~-~~~FGc~~~~~g~-f~--~~~~GilGLG~~~~Sl~sql~~~ 232 (431)
T PLN03146 157 ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFP-GIVFGCGHNNGGT-FD--EKGSGIVGLGGGPLSLISQLGSS 232 (431)
T ss_pred CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeC-CEEEeCCCCCCCC-cc--CCCceeEecCCCCccHHHHhhHh
Confidence 456999999999997899999999999973 578 9999999988765 52 36899999999999999998865
Q ss_pred cCCceEEEeec--C--CCCeeEEecCCCCC-CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccC
Q 046673 242 INHKFSYCLVY--P--LASSTLTFGDVDTS-GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERG 316 (447)
Q Consensus 242 ~~~~Fs~~l~~--~--~~~G~l~fGg~d~~-~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 316 (447)
..++|||||.+ . ...|.|+||+.... .+.+.|+|++.... + .+|+|+|++|+||++.+.++...|. . .+
T Consensus 233 ~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~-~~y~V~L~gIsVgg~~l~~~~~~~~--~--~~ 306 (431)
T PLN03146 233 IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-D-TFYYLTLEAISVGSKKLPYTGSSKN--G--VE 306 (431)
T ss_pred hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-C-CeEEEeEEEEEECCEECcCCccccc--c--CC
Confidence 55699999975 1 34799999996433 34589999986522 3 6999999999999999888776654 1 34
Q ss_pred CCcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEE
Q 046673 317 LGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIF 396 (447)
Q Consensus 317 ~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~ 396 (447)
.+++||||||++++||+++|++|.+++.+.+.. .+.......+.+|+.... ...+|+|+|+|+|.++.|++++|++.
T Consensus 307 ~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~--~~~~~~~~~~~~C~~~~~-~~~~P~i~~~F~Ga~~~l~~~~~~~~ 383 (431)
T PLN03146 307 EGNIIIDSGTTLTLLPSDFYSELESAVEEAIGG--ERVSDPQGLLSLCYSSTS-DIKLPIITAHFTGADVKLQPLNTFVK 383 (431)
T ss_pred CCcEEEeCCccceecCHHHHHHHHHHHHHHhcc--ccCCCCCCCCCccccCCC-CCCCCeEEEEECCCeeecCcceeEEE
Confidence 568999999999999999999999999988762 111222234679997431 23689999999988999999999998
Q ss_pred ecCCCceEEEEEEcCCCceeechhhhccEEEEEECCCCEEEEEeCCCCCC
Q 046673 397 NTAGEKYFCVALLPDDRLTIIGAYHQQNVLVIYDVGNNRLQFAPVVCKGP 446 (447)
Q Consensus 397 ~~~~~~~~C~~i~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~c~~~ 446 (447)
.. ++..|+++....+.+|||+.|||++|++||++++|||||+++|++.
T Consensus 384 ~~--~~~~Cl~~~~~~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 384 VS--EDLVCFAMIPTSSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred cC--CCcEEEEEecCCCceEECeeeEeeEEEEEECCCCEEeeecCCcCcC
Confidence 76 5678999877556799999999999999999999999999999863
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1e-57 Score=464.90 Aligned_cols=311 Identities=19% Similarity=0.320 Sum_probs=258.0
Q ss_pred ccccee-ccCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCC
Q 046673 86 IPITMN-TQSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFS 164 (447)
Q Consensus 86 ~~~~l~-~~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 164 (447)
...++. ..+.+|+++|+||||||+|.|++||||+++||+|..|..|.|..++.|||++||||+.+.+..
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~---------- 178 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD---------- 178 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC----------
Confidence 444444 589999999999999999999999999999999999998888999999999999999843211
Q ss_pred CCCCceeeeEecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCCh---------hh
Q 046673 165 CVNDVCVYDERYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLS---------LI 235 (447)
Q Consensus 165 C~~~~~~~~~~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s---------~~ 235 (447)
....+.+.|++|+ ..|.+++|+|++++..++ ++.||+++...+..| ...+++||||||++..+ +.
T Consensus 179 ---~~~~~~i~YGsGs-~~G~l~~DtV~ig~l~i~-~q~FG~a~~~s~~~f-~~~~~DGILGLg~~~~s~~s~~~~~p~~ 252 (482)
T PTZ00165 179 ---ESAETYIQYGTGE-CVLALGKDTVKIGGLKVK-HQSIGLAIEESLHPF-ADLPFDGLVGLGFPDKDFKESKKALPIV 252 (482)
T ss_pred ---ccceEEEEeCCCc-EEEEEEEEEEEECCEEEc-cEEEEEEEecccccc-ccccccceeecCCCcccccccCCCCCHH
Confidence 0125779999998 889999999999999999 999999998765435 34578999999998652 44
Q ss_pred hhhhc---ccCCceEEEeec-CCCCeeEEecCCCCC----CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCc
Q 046673 236 SQIGG---DINHKFSYCLVY-PLASSTLTFGDVDTS----GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNT 307 (447)
Q Consensus 236 ~ql~~---~~~~~Fs~~l~~-~~~~G~l~fGg~d~~----~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~ 307 (447)
.+|.. +..++||+||.+ ...+|.|+|||+|++ .+++.|+|+... .||.|++++|+||++.+....
T Consensus 253 ~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~-----~yW~i~l~~i~vgg~~~~~~~-- 325 (482)
T PTZ00165 253 DNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST-----DYWEIEVVDILIDGKSLGFCD-- 325 (482)
T ss_pred HHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc-----ceEEEEeCeEEECCEEeeecC--
Confidence 45443 468999999986 345799999999965 468999999876 799999999999998765421
Q ss_pred ccccccccCCCcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCc---
Q 046673 308 FAIRDVERGLGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGA--- 384 (447)
Q Consensus 308 ~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~--- 384 (447)
+...+|+||||+++++|++++++|.++++.. .+|+..+ .+|+|+|+|+|.
T Consensus 326 --------~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~---------------~~C~~~~----~lP~itf~f~g~~g~ 378 (482)
T PTZ00165 326 --------RKCKAAIDTGSSLITGPSSVINPLLEKIPLE---------------EDCSNKD----SLPRISFVLEDVNGR 378 (482)
T ss_pred --------CceEEEEcCCCccEeCCHHHHHHHHHHcCCc---------------ccccccc----cCCceEEEECCCCCc
Confidence 2257999999999999999999998877532 2699877 899999999864
Q ss_pred --eEEeCCCceEEEec--CCCceEEEE-EEcC------CCceeechhhhccEEEEEECCCCEEEEEeCCCCCC
Q 046673 385 --DWPLPKEYVYIFNT--AGEKYFCVA-LLPD------DRLTIIGAYHQQNVLVIYDVGNNRLQFAPVVCKGP 446 (447)
Q Consensus 385 --~~~l~~~~y~~~~~--~~~~~~C~~-i~~~------~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~c~~~ 446 (447)
++.|++++|+++.. ..++..|++ |+.. ++.||||++|||++|+|||++++|||||+++|...
T Consensus 379 ~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 379 KIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred eEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 89999999999742 124568986 7652 13799999999999999999999999999998754
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-56 Score=449.92 Aligned_cols=335 Identities=34% Similarity=0.600 Sum_probs=283.2
Q ss_pred cCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCC-CCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCcee
Q 046673 93 QSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCI-NCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCV 171 (447)
Q Consensus 93 ~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~-~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~ 171 (447)
..++|+++|.||||||.|.|++||||+++||+|..|. .|..+.++.|||++||||+.+.|.+..|.......|.++.|.
T Consensus 43 ~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C~ 122 (398)
T KOG1339|consen 43 SSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSCP 122 (398)
T ss_pred cccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCcCc
Confidence 6779999999999999999999999999999999999 787776667999999999999999999999987755588999
Q ss_pred eeEecCCCCeeeEEEEEEEEEecC---CCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCChhhhhhhcc--cCCce
Q 046673 172 YDERYANGASTKGIASEDLFFFFP---DSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLSLISQIGGD--INHKF 246 (447)
Q Consensus 172 ~~~~Y~dg~~~~G~~~~D~v~i~~---~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~--~~~~F 246 (447)
|.+.|+||+.+.|++++|+|++++ ..++ ++.|||+..+.+. +......+||||||++..++.+|+... ..++|
T Consensus 123 y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~-~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~~~F 200 (398)
T KOG1339|consen 123 YSIQYGDGSSTSGYLATDTVTFGGTTSLPVP-NQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLPSFYNAINVF 200 (398)
T ss_pred eEEEeCCCCceeEEEEEEEEEEccccccccc-cEEEEeeecCccc-cccccccceEeecCCCCccceeecccccCCceeE
Confidence 999999987899999999999998 6777 8999999999875 421146899999999999999998753 23359
Q ss_pred EEEeecCC----CCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccCCCcE
Q 046673 247 SYCLVYPL----ASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERGLGGC 320 (447)
Q Consensus 247 s~~l~~~~----~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
|+||.+.. ..|.|+||++|.. .+.+.|+||+.... .+|.|+|++|+|+++. .++...+. .+.+++
T Consensus 201 S~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~---~~y~v~l~~I~vgg~~-~~~~~~~~-----~~~~~~ 271 (398)
T KOG1339|consen 201 SYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS---TYYQVNLDGISVGGKR-PIGSSLFC-----TDGGGA 271 (398)
T ss_pred EEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC---ccEEEEEeEEEECCcc-CCCcceEe-----cCCCCE
Confidence 99999821 4899999999977 77899999999843 3999999999999987 55555554 234789
Q ss_pred EEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEe-CceEEeCCCceEEEecC
Q 046673 321 IMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQ-GADWPLPKEYVYIFNTA 399 (447)
Q Consensus 321 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~-g~~~~l~~~~y~~~~~~ 399 (447)
|+||||++++||.++|++|.+++.+.+. . ......+++.|+........+|.|+|+|+ |..|.|++++|+++..
T Consensus 272 iiDSGTs~t~lp~~~y~~i~~~~~~~~~---~-~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~- 346 (398)
T KOG1339|consen 272 IIDSGTSLTYLPTSAYNALREAIGAEVS---V-VGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVEVS- 346 (398)
T ss_pred EEECCcceeeccHHHHHHHHHHHHhhee---c-cccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccceEEEEC-
Confidence 9999999999999999999999999741 0 11223567799988721112999999999 6799999999999877
Q ss_pred CCceE-EEEEEc-CC--CceeechhhhccEEEEEECC-CCEEEEEe--CCCC
Q 046673 400 GEKYF-CVALLP-DD--RLTIIGAYHQQNVLVIYDVG-NNRLQFAP--VVCK 444 (447)
Q Consensus 400 ~~~~~-C~~i~~-~~--~~~iLG~~fl~~~yvvfD~~-~~~igfa~--~~c~ 444 (447)
++.. |+++.. .+ ..||||+.|||+++++||+. ++|||||+ ..|.
T Consensus 347 -~~~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 347 -DGGGVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred -CCCCceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 3322 999554 22 38999999999999999999 99999999 7775
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.7e-56 Score=438.45 Aligned_cols=300 Identities=20% Similarity=0.308 Sum_probs=250.0
Q ss_pred cCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCC--CCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCce
Q 046673 93 QSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINC--FPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVC 170 (447)
Q Consensus 93 ~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c--~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~ 170 (447)
.+.+|+++|.||||+|++.|++||||+++||+|..|..| .|..++.|||++|+||+... |
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~------------------~ 64 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNG------------------T 64 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCC------------------c
Confidence 478999999999999999999999999999999999743 56678899999999998754 7
Q ss_pred eeeEecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCCh------hhhhhhc---c
Q 046673 171 VYDERYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLS------LISQIGG---D 241 (447)
Q Consensus 171 ~~~~~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~~---~ 241 (447)
.|.+.|++|+ +.|.+++|+|+|++..++ ++.|||++...+..| .....+||||||++..+ ++++|.. +
T Consensus 65 ~~~i~Yg~G~-~~G~~~~D~v~~g~~~~~-~~~Fg~~~~~~~~~~-~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i 141 (325)
T cd05490 65 EFAIQYGSGS-LSGYLSQDTVSIGGLQVE-GQLFGEAVKQPGITF-IAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLV 141 (325)
T ss_pred EEEEEECCcE-EEEEEeeeEEEECCEEEc-CEEEEEEeeccCCcc-cceeeeEEEecCCccccccCCCCHHHHHHhcCCC
Confidence 9999999998 899999999999999999 999999988765434 22468999999997655 3445543 5
Q ss_pred cCCceEEEeecC---CCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccC
Q 046673 242 INHKFSYCLVYP---LASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERG 316 (447)
Q Consensus 242 ~~~~Fs~~l~~~---~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 316 (447)
..++||+||.+. ...|+|+|||+|++ .|++.|+|+... .+|.|++++|+|+++.... ..
T Consensus 142 ~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~-----~~w~v~l~~i~vg~~~~~~-----------~~ 205 (325)
T cd05490 142 EQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK-----AYWQIHMDQVDVGSGLTLC-----------KG 205 (325)
T ss_pred CCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc-----eEEEEEeeEEEECCeeeec-----------CC
Confidence 689999999862 24799999999976 789999999765 7999999999999874322 22
Q ss_pred CCcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEE
Q 046673 317 LGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIF 396 (447)
Q Consensus 317 ~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~ 396 (447)
...+||||||+++++|++++++|.+++++.. . ....+.++|+... .+|+|+|+|+|.++.|++++|+++
T Consensus 206 ~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~------~-~~~~~~~~C~~~~----~~P~i~f~fgg~~~~l~~~~y~~~ 274 (325)
T cd05490 206 GCEAIVDTGTSLITGPVEEVRALQKAIGAVP------L-IQGEYMIDCEKIP----TLPVISFSLGGKVYPLTGEDYILK 274 (325)
T ss_pred CCEEEECCCCccccCCHHHHHHHHHHhCCcc------c-cCCCEEecccccc----cCCCEEEEECCEEEEEChHHeEEe
Confidence 3579999999999999999999999886431 1 1124467999876 799999999999999999999987
Q ss_pred ecCCCceEEEE-EEcC------CCceeechhhhccEEEEEECCCCEEEEEe
Q 046673 397 NTAGEKYFCVA-LLPD------DRLTIIGAYHQQNVLVIYDVGNNRLQFAP 440 (447)
Q Consensus 397 ~~~~~~~~C~~-i~~~------~~~~iLG~~fl~~~yvvfD~~~~~igfa~ 440 (447)
....+...|++ |+.. .+.||||++|||++|+|||++++|||||+
T Consensus 275 ~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 275 VSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred ccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 65323468997 6541 24799999999999999999999999996
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=3.8e-56 Score=436.78 Aligned_cols=300 Identities=22% Similarity=0.330 Sum_probs=256.0
Q ss_pred ceec-cCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCC
Q 046673 89 TMNT-QSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVN 167 (447)
Q Consensus 89 ~l~~-~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~ 167 (447)
||.+ .+..|+++|.||||+|++.|+|||||+++||+|..|..|.|+.++.|||++|+|++...
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~---------------- 65 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG---------------- 65 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC----------------
Confidence 3443 58999999999999999999999999999999999998888889999999999999877
Q ss_pred CceeeeEecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCCh------hhhhhhc-
Q 046673 168 DVCVYDERYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLS------LISQIGG- 240 (447)
Q Consensus 168 ~~~~~~~~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~~- 240 (447)
+.|.+.|++|+ +.|.+++|+|++++..++ ++.|||+....+. +......+||||||++..+ +++||.+
T Consensus 66 --~~~~~~yg~gs-~~G~~~~D~v~ig~~~i~-~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~ 140 (317)
T cd05478 66 --QPLSIQYGTGS-MTGILGYDTVQVGGISDT-NQIFGLSETEPGS-FFYYAPFDGILGLAYPSIASSGATPVFDNMMSQ 140 (317)
T ss_pred --cEEEEEECCce-EEEEEeeeEEEECCEEEC-CEEEEEEEecCcc-ccccccccceeeeccchhcccCCCCHHHHHHhC
Confidence 78999999999 899999999999999999 9999999877654 2122458999999987543 6667654
Q ss_pred --ccCCceEEEeec-CCCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCccccccccc
Q 046673 241 --DINHKFSYCLVY-PLASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVER 315 (447)
Q Consensus 241 --~~~~~Fs~~l~~-~~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 315 (447)
+.++.||+||.+ ....|.|+|||+|.+ .|+++|+|+... .+|.|++++|+|+++.+.. .
T Consensus 141 g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~-----~~w~v~l~~v~v~g~~~~~-----------~ 204 (317)
T cd05478 141 GLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE-----TYWQITVDSVTINGQVVAC-----------S 204 (317)
T ss_pred CCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC-----cEEEEEeeEEEECCEEEcc-----------C
Confidence 467999999998 335799999999976 899999999765 7999999999999998753 2
Q ss_pred CCCcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEE
Q 046673 316 GLGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYI 395 (447)
Q Consensus 316 ~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~ 395 (447)
.+..+||||||++++||++++++|++++++... .......+|+... .+|.|+|+|+|.++.||+++|+.
T Consensus 205 ~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~-------~~~~~~~~C~~~~----~~P~~~f~f~g~~~~i~~~~y~~ 273 (317)
T cd05478 205 GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN-------QNGEMVVNCSSIS----SMPDVVFTINGVQYPLPPSAYIL 273 (317)
T ss_pred CCCEEEECCCchhhhCCHHHHHHHHHHhCCccc-------cCCcEEeCCcCcc----cCCcEEEEECCEEEEECHHHhee
Confidence 235799999999999999999999998865432 1123345999876 79999999999999999999997
Q ss_pred EecCCCceEEEE-EEcCC--CceeechhhhccEEEEEECCCCEEEEEe
Q 046673 396 FNTAGEKYFCVA-LLPDD--RLTIIGAYHQQNVLVIYDVGNNRLQFAP 440 (447)
Q Consensus 396 ~~~~~~~~~C~~-i~~~~--~~~iLG~~fl~~~yvvfD~~~~~igfa~ 440 (447)
+. +..|++ |+..+ +.||||++|||++|+|||++++|||||+
T Consensus 274 ~~----~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 274 QD----QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred cC----CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 54 468997 76633 5799999999999999999999999996
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=7.1e-56 Score=434.63 Aligned_cols=295 Identities=22% Similarity=0.325 Sum_probs=248.6
Q ss_pred EEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceeeeEec
Q 046673 97 YFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVYDERY 176 (447)
Q Consensus 97 Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y 176 (447)
|+++|+||||+|++.|+|||||+++||+|..|..+.|..++.|||++|+|++... |.|.+.|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~------------------~~~~i~Y 62 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNG------------------EAFSIQY 62 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCC------------------cEEEEEe
Confidence 8999999999999999999999999999999987777888999999999999876 7999999
Q ss_pred CCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCCh------hhhhhhc---ccCCceE
Q 046673 177 ANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLS------LISQIGG---DINHKFS 247 (447)
Q Consensus 177 ~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~~---~~~~~Fs 247 (447)
++|+ +.|.+++|+|++++..++ ++.|||+....+..| .+...+||||||++..+ +.++|.. +..++||
T Consensus 63 g~g~-~~G~~~~D~v~ig~~~~~-~~~fg~~~~~~~~~~-~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS 139 (316)
T cd05486 63 GTGS-LTGIIGIDQVTVEGITVQ-NQQFAESVSEPGSTF-QDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFS 139 (316)
T ss_pred CCcE-EEEEeeecEEEECCEEEc-CEEEEEeeccCcccc-cccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEE
Confidence 9998 899999999999999999 999999987765434 23578999999997655 3444432 4578999
Q ss_pred EEeecC---CCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccCCCcEEE
Q 046673 248 YCLVYP---LASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERGLGGCIM 322 (447)
Q Consensus 248 ~~l~~~---~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ii 322 (447)
+||.+. ...|.|+|||+|++ .|++.|+|+... .+|.|++++|+|+++.+..+ ....+||
T Consensus 140 ~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~-----~~w~v~l~~i~v~g~~~~~~-----------~~~~aii 203 (316)
T cd05486 140 VYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ-----GYWQIQLDNIQVGGTVIFCS-----------DGCQAIV 203 (316)
T ss_pred EEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc-----eEEEEEeeEEEEecceEecC-----------CCCEEEE
Confidence 999861 25799999999976 899999999875 79999999999999876432 2257999
Q ss_pred cccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEEecCCCc
Q 046673 323 DSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIFNTAGEK 402 (447)
Q Consensus 323 DSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~ 402 (447)
||||+++++|++++++|.+.+++... ...+..+|+... .+|+|+|+|+|.+++|++++|++.....++
T Consensus 204 DTGTs~~~lP~~~~~~l~~~~~~~~~--------~~~~~~~C~~~~----~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~ 271 (316)
T cd05486 204 DTGTSLITGPSGDIKQLQNYIGATAT--------DGEYGVDCSTLS----LMPSVTFTINGIPYSLSPQAYTLEDQSDGG 271 (316)
T ss_pred CCCcchhhcCHHHHHHHHHHhCCccc--------CCcEEEeccccc----cCCCEEEEECCEEEEeCHHHeEEecccCCC
Confidence 99999999999999999887754311 123446999776 799999999999999999999987532245
Q ss_pred eEEEE-EEcC------CCceeechhhhccEEEEEECCCCEEEEEe
Q 046673 403 YFCVA-LLPD------DRLTIIGAYHQQNVLVIYDVGNNRLQFAP 440 (447)
Q Consensus 403 ~~C~~-i~~~------~~~~iLG~~fl~~~yvvfD~~~~~igfa~ 440 (447)
..|++ |+.. .+.||||++|||++|+|||++++|||||+
T Consensus 272 ~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 272 GYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 68987 6542 13799999999999999999999999996
No 7
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.8e-55 Score=425.69 Aligned_cols=291 Identities=35% Similarity=0.626 Sum_probs=242.6
Q ss_pred cEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceeeeEe
Q 046673 96 LYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVYDER 175 (447)
Q Consensus 96 ~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~ 175 (447)
+|+++|.||||||++.|++||||+++||+|.+| |.|.+.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c-----------------------------------------~~~~i~ 39 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC-----------------------------------------CLYQVS 39 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------CeeeeE
Confidence 599999999999999999999999999987654 378999
Q ss_pred cCCCCeeeEEEEEEEEEecCC-CcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCChhhhhhhcccCCceEEEeec-C
Q 046673 176 YANGASTKGIASEDLFFFFPD-SIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLSLISQIGGDINHKFSYCLVY-P 253 (447)
Q Consensus 176 Y~dg~~~~G~~~~D~v~i~~~-~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~Fs~~l~~-~ 253 (447)
|++|+.+.|.+++|+|+|++. .++ ++.|||+....+. + ...+||||||++..++++|+.....++||+||.+ .
T Consensus 40 Yg~Gs~~~G~~~~D~v~ig~~~~~~-~~~Fg~~~~~~~~-~---~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~ 114 (299)
T cd05472 40 YGDGSYTTGDLATDTLTLGSSDVVP-GFAFGCGHDNEGL-F---GGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRS 114 (299)
T ss_pred eCCCceEEEEEEEEEEEeCCCCccC-CEEEECCccCCCc-c---CCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCC
Confidence 999997799999999999988 888 9999999988765 5 4789999999999999999876567899999986 2
Q ss_pred -CCCeeEEecCCCCCCCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccCCCcEEEcccCcceecC
Q 046673 254 -LASSTLTFGDVDTSGLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERGLGGCIMDSGSAFTSME 332 (447)
Q Consensus 254 -~~~G~l~fGg~d~~~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp 332 (447)
...|+|+|||+|++.|+++|+|++.++..+ .+|.|+|++|+|+++.+.++... .....+||||||++++||
T Consensus 115 ~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~-~~y~v~l~~i~vg~~~~~~~~~~-------~~~~~~ivDSGTt~~~lp 186 (299)
T cd05472 115 SSSSGYLSFGAAASVPAGASFTPMLSNPRVP-TFYYVGLTGISVGGRRLPIPPAS-------FGAGGVIIDSGTVITRLP 186 (299)
T ss_pred CCCCceEEeCCccccCCCceECCCccCCCCC-CeEEEeeEEEEECCEECCCCccc-------cCCCCeEEeCCCcceecC
Confidence 468999999999777899999999875444 69999999999999987654321 223679999999999999
Q ss_pred hhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCC-CCCCCeEEEEEe-CceEEeCCCceEEEecCCCceEEEEEEc
Q 046673 333 RTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPN-FTDYPSMTLHFQ-GADWPLPKEYVYIFNTAGEKYFCVALLP 410 (447)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~l~f~f~-g~~~~l~~~~y~~~~~~~~~~~C~~i~~ 410 (447)
+++|++|.+++.+.... .........+..|+..... ...+|+|+|+|+ |.++.|++++|++... ..+..|+++..
T Consensus 187 ~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~~~~~ 263 (299)
T cd05472 187 PSAYAALRDAFRAAMAA--YPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCLAFAG 263 (299)
T ss_pred HHHHHHHHHHHHHHhcc--CCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEEEEeC
Confidence 99999999999987642 1111111223359865322 247999999998 6799999999998432 24678998766
Q ss_pred C---CCceeechhhhccEEEEEECCCCEEEEEeCCC
Q 046673 411 D---DRLTIIGAYHQQNVLVIYDVGNNRLQFAPVVC 443 (447)
Q Consensus 411 ~---~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~c 443 (447)
. .+.+|||+.|||++|+|||++++|||||+++|
T Consensus 264 ~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 264 TSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 4 24799999999999999999999999999999
No 8
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=5.2e-55 Score=430.09 Aligned_cols=297 Identities=27% Similarity=0.411 Sum_probs=249.3
Q ss_pred ccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceeeeE
Q 046673 95 SLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVYDE 174 (447)
Q Consensus 95 ~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~ 174 (447)
+.|+++|.||||+|++.|+|||||+++||+|.+|..|.++.++.|||++|+|++.+.|.+..|.. ...|.++.|.|.+
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~~~~~~~i 79 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLNNKCEYSI 79 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--cCcCCCCcCcEEE
Confidence 58999999999999999999999999999999999999888899999999999999999999953 3457778899999
Q ss_pred ecCCCCeeeEEEEEEEEEecCCCcc------eeeEeeeeecCCCCCCCCCCCcceEEeeCCCCCh-hh-------hhhhc
Q 046673 175 RYANGASTKGIASEDLFFFFPDSIP------EFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLS-LI-------SQIGG 240 (447)
Q Consensus 175 ~Y~dg~~~~G~~~~D~v~i~~~~~~------~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s-~~-------~ql~~ 240 (447)
.|++|+.+.|.+++|+|+|++..++ .++.|||+....+. | .....+||||||+...+ +. +|...
T Consensus 80 ~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~ 157 (326)
T cd06096 80 SYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNL-F-LTQQATGILGLSLTKNNGLPTPIILLFTKRPK 157 (326)
T ss_pred EECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCc-c-cccccceEEEccCCcccccCchhHHHHHhccc
Confidence 9999987899999999999976542 15789999987664 3 22568999999998643 11 22111
Q ss_pred -ccCCceEEEeecCCCCeeEEecCCCCC--C----------CCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCc
Q 046673 241 -DINHKFSYCLVYPLASSTLTFGDVDTS--G----------LPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNT 307 (447)
Q Consensus 241 -~~~~~Fs~~l~~~~~~G~l~fGg~d~~--~----------g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~ 307 (447)
...++||+||.+ ..|.|+|||+|++ . +++.|+|+... .+|.|++++|+|+++......
T Consensus 158 ~~~~~~FS~~l~~--~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~-----~~y~v~l~~i~vg~~~~~~~~-- 228 (326)
T cd06096 158 LKKDKIFSICLSE--DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK-----YYYYVKLEGLSVYGTTSNSGN-- 228 (326)
T ss_pred ccCCceEEEEEcC--CCeEEEECccChhhhcccccccccccCCceEEeccCC-----ceEEEEEEEEEEcccccceec--
Confidence 124899999997 5799999999965 3 78999999876 799999999999988611100
Q ss_pred ccccccccCCCcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEe-CceE
Q 046673 308 FAIRDVERGLGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQ-GADW 386 (447)
Q Consensus 308 ~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~-g~~~ 386 (447)
.....+||||||++++||+++|++|.+++ |+|+|+|+ |.++
T Consensus 229 -------~~~~~aivDSGTs~~~lp~~~~~~l~~~~-------------------------------P~i~~~f~~g~~~ 270 (326)
T cd06096 229 -------TKGLGMLVDSGSTLSHFPEDLYNKINNFF-------------------------------PTITIIFENNLKI 270 (326)
T ss_pred -------ccCCCEEEeCCCCcccCCHHHHHHHHhhc-------------------------------CcEEEEEcCCcEE
Confidence 23467999999999999999998887654 69999998 6799
Q ss_pred EeCCCceEEEecCCCceEEEEEEcCCCceeechhhhccEEEEEECCCCEEEEEeCCCC
Q 046673 387 PLPKEYVYIFNTAGEKYFCVALLPDDRLTIIGAYHQQNVLVIYDVGNNRLQFAPVVCK 444 (447)
Q Consensus 387 ~l~~~~y~~~~~~~~~~~C~~i~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~c~ 444 (447)
.++|++|++... +..+|+++...++.+|||++|||++|+|||++++|||||+++|.
T Consensus 271 ~i~p~~y~~~~~--~~~c~~~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 271 DWKPSSYLYKKE--SFWCKGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EECHHHhccccC--CceEEEEEecCCCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 999999998765 44556667666678999999999999999999999999999994
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=5.4e-55 Score=428.87 Aligned_cols=297 Identities=23% Similarity=0.370 Sum_probs=252.9
Q ss_pred CccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceeee
Q 046673 94 SSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVYD 173 (447)
Q Consensus 94 ~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~ 173 (447)
+..|+++|.||||||++.|++||||+++||+|..|..+.|..++.|||++|+||+... |.|.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~------------------~~~~ 62 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNG------------------ETFS 62 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECC------------------cEEE
Confidence 4689999999999999999999999999999999998888889999999999999876 7999
Q ss_pred EecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCC------Chhhhhhhc---ccCC
Q 046673 174 ERYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSP------LSLISQIGG---DINH 244 (447)
Q Consensus 174 ~~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~---~~~~ 244 (447)
+.|++|+ +.|.+++|+|++++..++ ++.|||++...+..+ .....+||||||++. .++++||.. +..+
T Consensus 63 ~~Yg~Gs-~~G~~~~D~i~~g~~~i~-~~~Fg~~~~~~~~~~-~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~ 139 (318)
T cd05477 63 LQYGSGS-LTGIFGYDTVTVQGIIIT-NQEFGLSETEPGTNF-VYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAP 139 (318)
T ss_pred EEECCcE-EEEEEEeeEEEECCEEEc-CEEEEEEEecccccc-cccceeeEeecCcccccccCCCCHHHHHHhcCCcCCC
Confidence 9999998 899999999999999999 999999998765433 224679999999863 357777654 5689
Q ss_pred ceEEEeecC--CCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccCCCcE
Q 046673 245 KFSYCLVYP--LASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERGLGGC 320 (447)
Q Consensus 245 ~Fs~~l~~~--~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
+||+||.+. ...|.|+|||+|.+ .|+++|+|+... .+|.|++++|+|+++.+... .....+
T Consensus 140 ~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~-----~~w~v~l~~i~v~g~~~~~~----------~~~~~~ 204 (318)
T cd05477 140 IFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE-----TYWQIGIQGFQINGQATGWC----------SQGCQA 204 (318)
T ss_pred EEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc-----eEEEEEeeEEEECCEEeccc----------CCCcee
Confidence 999999872 35799999999976 789999999765 79999999999999876432 123569
Q ss_pred EEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEEecCC
Q 046673 321 IMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIFNTAG 400 (447)
Q Consensus 321 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~ 400 (447)
||||||+++++|++++++|++++++... ....+..+|+... .+|+|+|+|+|.++.|++++|+...
T Consensus 205 iiDSGtt~~~lP~~~~~~l~~~~~~~~~-------~~~~~~~~C~~~~----~~p~l~~~f~g~~~~v~~~~y~~~~--- 270 (318)
T cd05477 205 IVDTGTSLLTAPQQVMSTLMQSIGAQQD-------QYGQYVVNCNNIQ----NLPTLTFTINGVSFPLPPSAYILQN--- 270 (318)
T ss_pred eECCCCccEECCHHHHHHHHHHhCCccc-------cCCCEEEeCCccc----cCCcEEEEECCEEEEECHHHeEecC---
Confidence 9999999999999999999999876533 1123456899876 7999999999999999999999864
Q ss_pred CceEEEE-EEcC------C-CceeechhhhccEEEEEECCCCEEEEEeC
Q 046673 401 EKYFCVA-LLPD------D-RLTIIGAYHQQNVLVIYDVGNNRLQFAPV 441 (447)
Q Consensus 401 ~~~~C~~-i~~~------~-~~~iLG~~fl~~~yvvfD~~~~~igfa~~ 441 (447)
+..|++ |++. + +.||||++|||++|++||++++|||||++
T Consensus 271 -~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 -NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred -CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 357985 7541 1 36999999999999999999999999986
No 10
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.5e-54 Score=425.40 Aligned_cols=299 Identities=20% Similarity=0.321 Sum_probs=249.6
Q ss_pred cCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCC--CCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCce
Q 046673 93 QSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINC--FPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVC 170 (447)
Q Consensus 93 ~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c--~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~ 170 (447)
.+..|+++|.||||+|+++|++||||+++||++..|..| .|..++.|+|++|+||+... |
T Consensus 5 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~------------------~ 66 (326)
T cd05487 5 LDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENG------------------T 66 (326)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECC------------------E
Confidence 578999999999999999999999999999999999764 56788999999999999876 8
Q ss_pred eeeEecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCCh------hhhhhh---cc
Q 046673 171 VYDERYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLS------LISQIG---GD 241 (447)
Q Consensus 171 ~~~~~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~---~~ 241 (447)
.|.+.|++|+ +.|.+++|+|++++..+. +.||++.......| .....+||||||++..+ ++.+|. .+
T Consensus 67 ~~~~~Yg~g~-~~G~~~~D~v~~g~~~~~--~~fg~~~~~~~~~~-~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i 142 (326)
T cd05487 67 EFTIHYASGT-VKGFLSQDIVTVGGIPVT--QMFGEVTALPAIPF-MLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVL 142 (326)
T ss_pred EEEEEeCCce-EEEEEeeeEEEECCEEee--EEEEEEEeccCCcc-ceeecceEEecCChhhcccCCCCHHHHHHhcCCC
Confidence 9999999998 999999999999987665 67999987643223 12468999999997654 223322 25
Q ss_pred cCCceEEEeecC---CCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccC
Q 046673 242 INHKFSYCLVYP---LASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERG 316 (447)
Q Consensus 242 ~~~~Fs~~l~~~---~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 316 (447)
..++||+||.+. ...|.|+|||+|++ .|+++|+|+... .+|.|++++|+|+++.+... .
T Consensus 143 ~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~-----~~w~v~l~~i~vg~~~~~~~-----------~ 206 (326)
T cd05487 143 KEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT-----GFWQIQMKGVSVGSSTLLCE-----------D 206 (326)
T ss_pred CCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC-----ceEEEEecEEEECCEEEecC-----------C
Confidence 689999999872 35799999999977 899999999765 79999999999999876532 2
Q ss_pred CCcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEE
Q 046673 317 LGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIF 396 (447)
Q Consensus 317 ~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~ 396 (447)
+..+||||||++++||+++++++++++++... ...+..+|+... .+|+|+|+|+|.+++|++++|+++
T Consensus 207 ~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~--------~~~y~~~C~~~~----~~P~i~f~fgg~~~~v~~~~yi~~ 274 (326)
T cd05487 207 GCTAVVDTGASFISGPTSSISKLMEALGAKER--------LGDYVVKCNEVP----TLPDISFHLGGKEYTLSSSDYVLQ 274 (326)
T ss_pred CCEEEECCCccchhCcHHHHHHHHHHhCCccc--------CCCEEEeccccC----CCCCEEEEECCEEEEeCHHHhEEe
Confidence 25799999999999999999999999865421 134457999876 799999999988999999999997
Q ss_pred ecCCCceEEEE-EEcC-----C-CceeechhhhccEEEEEECCCCEEEEEeC
Q 046673 397 NTAGEKYFCVA-LLPD-----D-RLTIIGAYHQQNVLVIYDVGNNRLQFAPV 441 (447)
Q Consensus 397 ~~~~~~~~C~~-i~~~-----~-~~~iLG~~fl~~~yvvfD~~~~~igfa~~ 441 (447)
....++..|++ |+.. . +.||||++|||++|+|||++++|||||++
T Consensus 275 ~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 275 DSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred ccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 65334678986 7642 1 37999999999999999999999999986
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3e-54 Score=423.72 Aligned_cols=295 Identities=21% Similarity=0.323 Sum_probs=249.1
Q ss_pred cCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceee
Q 046673 93 QSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVY 172 (447)
Q Consensus 93 ~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~ 172 (447)
.+..|+++|.||||+|++.|++||||+++||+|..|..+.|..++.|+|++|+|++... |.+
T Consensus 7 ~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~------------------~~~ 68 (320)
T cd05488 7 LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANG------------------TEF 68 (320)
T ss_pred CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCC------------------CEE
Confidence 57889999999999999999999999999999999987777778899999999999866 789
Q ss_pred eEecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCChhhh------hhh---cccC
Q 046673 173 DERYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLSLIS------QIG---GDIN 243 (447)
Q Consensus 173 ~~~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~------ql~---~~~~ 243 (447)
.+.|++|+ +.|.+++|++++++..++ ++.|||+....+..| .....+||||||++..+... +|. .+..
T Consensus 69 ~~~y~~g~-~~G~~~~D~v~ig~~~~~-~~~f~~a~~~~g~~~-~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~ 145 (320)
T cd05488 69 KIQYGSGS-LEGFVSQDTLSIGDLTIK-KQDFAEATSEPGLAF-AFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDE 145 (320)
T ss_pred EEEECCce-EEEEEEEeEEEECCEEEC-CEEEEEEecCCCcce-eeeeeceEEecCCccccccCCCCHHHHHHhcCCCCC
Confidence 99999998 899999999999999999 999999987765433 22467999999998765432 222 2468
Q ss_pred CceEEEeec-CCCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccCCCcE
Q 046673 244 HKFSYCLVY-PLASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERGLGGC 320 (447)
Q Consensus 244 ~~Fs~~l~~-~~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
++||+||.+ ....|.|+|||+|++ .|+++|+|++.. .+|.|++++|+||++.+..+ ...+
T Consensus 146 ~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~-----~~w~v~l~~i~vg~~~~~~~------------~~~~ 208 (320)
T cd05488 146 PVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK-----AYWEVELEKIGLGDEELELE------------NTGA 208 (320)
T ss_pred CEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC-----cEEEEEeCeEEECCEEeccC------------CCeE
Confidence 899999997 346899999999976 789999999865 79999999999999876531 2569
Q ss_pred EEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEEecCC
Q 046673 321 IMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIFNTAG 400 (447)
Q Consensus 321 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~ 400 (447)
+|||||++++||+++++++.+++++... ....+..+|++.. .+|.|+|+|+|.++.||+++|+++..
T Consensus 209 ivDSGtt~~~lp~~~~~~l~~~~~~~~~-------~~~~~~~~C~~~~----~~P~i~f~f~g~~~~i~~~~y~~~~~-- 275 (320)
T cd05488 209 AIDTGTSLIALPSDLAEMLNAEIGAKKS-------WNGQYTVDCSKVD----SLPDLTFNFDGYNFTLGPFDYTLEVS-- 275 (320)
T ss_pred EEcCCcccccCCHHHHHHHHHHhCCccc-------cCCcEEeeccccc----cCCCEEEEECCEEEEECHHHheecCC--
Confidence 9999999999999999999988864422 1123345899876 79999999999999999999998543
Q ss_pred CceEEEE-EEcC------CCceeechhhhccEEEEEECCCCEEEEEe
Q 046673 401 EKYFCVA-LLPD------DRLTIIGAYHQQNVLVIYDVGNNRLQFAP 440 (447)
Q Consensus 401 ~~~~C~~-i~~~------~~~~iLG~~fl~~~yvvfD~~~~~igfa~ 440 (447)
..|++ +... .+.||||+.|||++|+|||++++|||||+
T Consensus 276 --g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 276 --GSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred --CeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 46997 5542 13699999999999999999999999996
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=5.5e-54 Score=423.18 Aligned_cols=300 Identities=21% Similarity=0.284 Sum_probs=251.3
Q ss_pred ccCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCC--CCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCc
Q 046673 92 TQSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINC--FPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDV 169 (447)
Q Consensus 92 ~~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c--~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~ 169 (447)
..+..|+++|.||||+|++.|++||||+++||+|..|..| .|..++.|||++|+|++...
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~------------------ 68 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNG------------------ 68 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECC------------------
Confidence 4789999999999999999999999999999999999743 35567899999999999876
Q ss_pred eeeeEecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCChh------hhhhhc---
Q 046673 170 CVYDERYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLSL------ISQIGG--- 240 (447)
Q Consensus 170 ~~~~~~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~------~~ql~~--- 240 (447)
|.|.+.|++|+ +.|.+++|++++++..++ ++.|||+..+.+..| .....+||||||++..+. ..||.+
T Consensus 69 ~~~~i~Y~~g~-~~G~~~~D~v~ig~~~~~-~~~fg~~~~~~~~~~-~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~ 145 (329)
T cd05485 69 TEFAIQYGSGS-LSGFLSTDTVSVGGVSVK-GQTFAEAINEPGLTF-VAAKFDGILGMGYSSISVDGVVPVFYNMVNQKL 145 (329)
T ss_pred eEEEEEECCce-EEEEEecCcEEECCEEEC-CEEEEEEEecCCccc-cccccceEEEcCCccccccCCCCHHHHHHhCCC
Confidence 89999999998 899999999999999999 999999987755434 235689999999987653 345433
Q ss_pred ccCCceEEEeecC---CCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCccccccccc
Q 046673 241 DINHKFSYCLVYP---LASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVER 315 (447)
Q Consensus 241 ~~~~~Fs~~l~~~---~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 315 (447)
+..+.||+||.+. ...|.|+|||+|.+ .|+++|+|+... .+|.|+++++.|+++.+. .
T Consensus 146 i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~-----~~~~v~~~~i~v~~~~~~------------~ 208 (329)
T cd05485 146 VDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK-----GYWQFKMDSVSVGEGEFC------------S 208 (329)
T ss_pred CCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc-----eEEEEEeeEEEECCeeec------------C
Confidence 4578999999861 24799999999976 789999999764 799999999999998653 2
Q ss_pred CCCcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEE
Q 046673 316 GLGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYI 395 (447)
Q Consensus 316 ~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~ 395 (447)
....+||||||+++++|++++++|.+++++... ....+.++|+... .+|+|+|+|+|.++.|++++|++
T Consensus 209 ~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~-------~~~~~~~~C~~~~----~~p~i~f~fgg~~~~i~~~~yi~ 277 (329)
T cd05485 209 GGCQAIADTGTSLIAGPVDEIEKLNNAIGAKPI-------IGGEYMVNCSAIP----SLPDITFVLGGKSFSLTGKDYVL 277 (329)
T ss_pred CCcEEEEccCCcceeCCHHHHHHHHHHhCCccc-------cCCcEEEeccccc----cCCcEEEEECCEEeEEChHHeEE
Confidence 235799999999999999999999988865321 1123456999876 78999999999999999999999
Q ss_pred EecCCCceEEEE-EEcC------CCceeechhhhccEEEEEECCCCEEEEEe
Q 046673 396 FNTAGEKYFCVA-LLPD------DRLTIIGAYHQQNVLVIYDVGNNRLQFAP 440 (447)
Q Consensus 396 ~~~~~~~~~C~~-i~~~------~~~~iLG~~fl~~~yvvfD~~~~~igfa~ 440 (447)
+....+...|++ ++.. ++.||||+.|||++|+|||++++|||||+
T Consensus 278 ~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 278 KVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 876334568997 6642 24799999999999999999999999985
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=9.3e-54 Score=419.56 Aligned_cols=290 Identities=23% Similarity=0.323 Sum_probs=241.6
Q ss_pred ccCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCC-CCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCce
Q 046673 92 TQSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCI-NCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVC 170 (447)
Q Consensus 92 ~~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~-~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~ 170 (447)
..+..|+++|.||||+|++.|++||||+++||+|..|. ...|..++.|||++|+|++... .
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~------------------~ 67 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNG------------------T 67 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCC------------------C
Confidence 36889999999999999999999999999999999996 2234678899999999999866 6
Q ss_pred eeeEecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCChh------hhhhhc---c
Q 046673 171 VYDERYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLSL------ISQIGG---D 241 (447)
Q Consensus 171 ~~~~~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~------~~ql~~---~ 241 (447)
.+.+.|++|+ +.|.+++|+|++++.+++ ++.||+++...+..| .....+||||||++..+. ..+|.. +
T Consensus 68 ~~~i~Yg~G~-~~G~~~~D~v~ig~~~v~-~~~f~~~~~~~~~~~-~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i 144 (317)
T cd06098 68 SASIQYGTGS-ISGFFSQDSVTVGDLVVK-NQVFIEATKEPGLTF-LLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLV 144 (317)
T ss_pred EEEEEcCCce-EEEEEEeeEEEECCEEEC-CEEEEEEEecCCccc-cccccceeccccccchhhcCCCCHHHHHHhcCCC
Confidence 8999999998 899999999999999999 999999987755334 235689999999976553 233332 4
Q ss_pred cCCceEEEeec---CCCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccC
Q 046673 242 INHKFSYCLVY---PLASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERG 316 (447)
Q Consensus 242 ~~~~Fs~~l~~---~~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 316 (447)
..++||+||.+ ....|.|+|||+|++ .|+++|+|+... .+|.|++++|+|+++.+.... +
T Consensus 145 ~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~-----~~w~v~l~~i~v~g~~~~~~~----------~ 209 (317)
T cd06098 145 KEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK-----GYWQFEMGDVLIGGKSTGFCA----------G 209 (317)
T ss_pred CCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC-----cEEEEEeCeEEECCEEeeecC----------C
Confidence 57899999986 235799999999976 899999999865 799999999999998765421 2
Q ss_pred CCcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEE
Q 046673 317 LGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIF 396 (447)
Q Consensus 317 ~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~ 396 (447)
...+||||||+++++|+++++++. ...+|+... .+|+|+|+|+|..+.|++++|+++
T Consensus 210 ~~~aivDTGTs~~~lP~~~~~~i~-------------------~~~~C~~~~----~~P~i~f~f~g~~~~l~~~~yi~~ 266 (317)
T cd06098 210 GCAAIADSGTSLLAGPTTIVTQIN-------------------SAVDCNSLS----SMPNVSFTIGGKTFELTPEQYILK 266 (317)
T ss_pred CcEEEEecCCcceeCCHHHHHhhh-------------------ccCCccccc----cCCcEEEEECCEEEEEChHHeEEe
Confidence 256999999999999998776553 234799876 799999999999999999999987
Q ss_pred ecCCCceEEEE-EEcC------CCceeechhhhccEEEEEECCCCEEEEEe
Q 046673 397 NTAGEKYFCVA-LLPD------DRLTIIGAYHQQNVLVIYDVGNNRLQFAP 440 (447)
Q Consensus 397 ~~~~~~~~C~~-i~~~------~~~~iLG~~fl~~~yvvfD~~~~~igfa~ 440 (447)
........|++ |+.. ++.||||+.|||++|+|||++++|||||+
T Consensus 267 ~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 267 VGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred ecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 65323468997 6541 13799999999999999999999999995
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.9e-53 Score=429.14 Aligned_cols=306 Identities=20% Similarity=0.304 Sum_probs=250.7
Q ss_pred Cccccee-ccCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCC
Q 046673 85 TIPITMN-TQSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREF 163 (447)
Q Consensus 85 ~~~~~l~-~~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 163 (447)
...++|. ..+.+|+++|+||||+|++.|++||||+++||+|..|..|.|..++.|||++|+||+...
T Consensus 127 ~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~------------ 194 (453)
T PTZ00147 127 FDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG------------ 194 (453)
T ss_pred CCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC------------
Confidence 3456664 478899999999999999999999999999999999998888999999999999999877
Q ss_pred CCCCCceeeeEecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCC-CCCCCCCcceEEeeCCCCCh------hhh
Q 046673 164 SCVNDVCVYDERYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGF-PFGPDNRISGILGLSMSPLS------LIS 236 (447)
Q Consensus 164 ~C~~~~~~~~~~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~GIlGLg~~~~s------~~~ 236 (447)
+.|.+.|++|+ +.|.+++|+|++|+.+++ . .|+++....+. ++......+||||||++..+ ++.
T Consensus 195 ------~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~v~-~-qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~ 265 (453)
T PTZ00147 195 ------TKVEMNYVSGT-VSGFFSKDLVTIGNLSVP-Y-KFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVV 265 (453)
T ss_pred ------CEEEEEeCCCC-EEEEEEEEEEEECCEEEE-E-EEEEEEeccCcccccccccccceecccCCccccccCCCHHH
Confidence 79999999998 999999999999998887 4 68888765432 01123468999999998765 344
Q ss_pred hhhc---ccCCceEEEeec-CCCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccc
Q 046673 237 QIGG---DINHKFSYCLVY-PLASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAI 310 (447)
Q Consensus 237 ql~~---~~~~~Fs~~l~~-~~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~ 310 (447)
+|.. +..++||+||.+ ....|.|+|||+|.+ .|+++|+|+... .+|.|.++ +.+++...
T Consensus 266 ~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~-----~~W~V~l~-~~vg~~~~--------- 330 (453)
T PTZ00147 266 ELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD-----LYWQVDLD-VHFGNVSS--------- 330 (453)
T ss_pred HHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC-----ceEEEEEE-EEECCEec---------
Confidence 5432 568899999987 446799999999977 899999999754 79999998 46765421
Q ss_pred cccccCCCcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCC
Q 046673 311 RDVERGLGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPK 390 (447)
Q Consensus 311 ~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~ 390 (447)
....+||||||+++++|+++++++++++++... + .......+|+. . .+|+|+|.|+|..++|+|
T Consensus 331 -----~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~----~--~~~~y~~~C~~-~----~lP~~~f~f~g~~~~L~p 394 (453)
T PTZ00147 331 -----EKANVIVDSGTSVITVPTEFLNKFVESLDVFKV----P--FLPLYVTTCNN-T----KLPTLEFRSPNKVYTLEP 394 (453)
T ss_pred -----CceeEEECCCCchhcCCHHHHHHHHHHhCCeec----C--CCCeEEEeCCC-C----CCCeEEEEECCEEEEECH
Confidence 225799999999999999999999998865321 1 11233568986 3 689999999999999999
Q ss_pred CceEEEecCCCceEEEE-EEcCC---CceeechhhhccEEEEEECCCCEEEEEeCC
Q 046673 391 EYVYIFNTAGEKYFCVA-LLPDD---RLTIIGAYHQQNVLVIYDVGNNRLQFAPVV 442 (447)
Q Consensus 391 ~~y~~~~~~~~~~~C~~-i~~~~---~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 442 (447)
++|+.+........|++ |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 395 ~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 395 EYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred HHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 99997644223468987 77632 489999999999999999999999999987
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2.8e-52 Score=421.17 Aligned_cols=304 Identities=20% Similarity=0.294 Sum_probs=247.4
Q ss_pred cccce-eccCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCC
Q 046673 86 IPITM-NTQSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFS 164 (447)
Q Consensus 86 ~~~~l-~~~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 164 (447)
..+++ ...+.+|+++|.||||+|++.|++||||+++||+|..|..+.|..++.|||++|+|++...
T Consensus 127 ~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~------------- 193 (450)
T PTZ00013 127 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDG------------- 193 (450)
T ss_pred CceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCC-------------
Confidence 34455 3467899999999999999999999999999999999988778889999999999999876
Q ss_pred CCCCceeeeEecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCC--CCCCCCCCcceEEeeCCCCCh------hhh
Q 046673 165 CVNDVCVYDERYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQG--FPFGPDNRISGILGLSMSPLS------LIS 236 (447)
Q Consensus 165 C~~~~~~~~~~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~--~~~~~~~~~~GIlGLg~~~~s------~~~ 236 (447)
+.+.+.|++|+ +.|.+++|+|++|+.+++ ..|+++..... ..+ .....+||||||++..+ ++.
T Consensus 194 -----~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~~~--~~f~~~~~~~~~~~~~-~~~~~dGIlGLg~~~~s~~~~~p~~~ 264 (450)
T PTZ00013 194 -----TKVDITYGSGT-VKGFFSKDLVTLGHLSMP--YKFIEVTDTDDLEPIY-SSSEFDGILGLGWKDLSIGSIDPIVV 264 (450)
T ss_pred -----cEEEEEECCce-EEEEEEEEEEEECCEEEc--cEEEEEEeccccccce-ecccccceecccCCccccccCCCHHH
Confidence 79999999998 999999999999998777 47888765532 112 22468999999998654 455
Q ss_pred hhhc---ccCCceEEEeec-CCCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccc
Q 046673 237 QIGG---DINHKFSYCLVY-PLASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAI 310 (447)
Q Consensus 237 ql~~---~~~~~Fs~~l~~-~~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~ 310 (447)
+|.. +..++||+||.+ +...|.|+|||+|++ .|+++|+|+... .+|.|+++ +.+|....
T Consensus 265 ~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~-----~yW~I~l~-v~~G~~~~--------- 329 (450)
T PTZ00013 265 ELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD-----LYWQIDLD-VHFGKQTM--------- 329 (450)
T ss_pred HHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC-----ceEEEEEE-EEECceec---------
Confidence 6543 568899999986 346899999999977 899999999765 79999998 66664332
Q ss_pred cccccCCCcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCC
Q 046673 311 RDVERGLGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPK 390 (447)
Q Consensus 311 ~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~ 390 (447)
....+||||||+++++|++++++++++++.... + ....+..+|+. . .+|+|+|+|+|.+++|++
T Consensus 330 -----~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~----~--~~~~y~~~C~~-~----~lP~i~F~~~g~~~~L~p 393 (450)
T PTZ00013 330 -----QKANVIVDSGTTTITAPSEFLNKFFANLNVIKV----P--FLPFYVTTCDN-K----EMPTLEFKSANNTYTLEP 393 (450)
T ss_pred -----cccceEECCCCccccCCHHHHHHHHHHhCCeec----C--CCCeEEeecCC-C----CCCeEEEEECCEEEEECH
Confidence 125699999999999999999999998865321 1 11234568986 3 689999999999999999
Q ss_pred CceEEEecCCCceEEEE-EEcC---CCceeechhhhccEEEEEECCCCEEEEEeCC
Q 046673 391 EYVYIFNTAGEKYFCVA-LLPD---DRLTIIGAYHQQNVLVIYDVGNNRLQFAPVV 442 (447)
Q Consensus 391 ~~y~~~~~~~~~~~C~~-i~~~---~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 442 (447)
++|+.+....++..|++ +++. ++.||||++|||++|+|||++++|||||+++
T Consensus 394 ~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 394 EYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred HHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 99987643224568987 7663 2489999999999999999999999999985
No 16
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=7.5e-52 Score=411.03 Aligned_cols=315 Identities=24% Similarity=0.440 Sum_probs=255.3
Q ss_pred ecCCCce-EeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCC------------CCCCCCc
Q 046673 103 IGRPITQ-EPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNRE------------FSCVNDV 169 (447)
Q Consensus 103 iGtP~Q~-~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~------------~~C~~~~ 169 (447)
+|||-.+ +.|++||||+++||+|.+ .+|+||+.+.|.++.|..... ..|.++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 5888878 999999999999999874 468899999999999986643 2576778
Q ss_pred eeeeEe-cCCCCeeeEEEEEEEEEecC--------CCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCChhhhhhhc
Q 046673 170 CVYDER-YANGASTKGIASEDLFFFFP--------DSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLSLISQIGG 240 (447)
Q Consensus 170 ~~~~~~-Y~dg~~~~G~~~~D~v~i~~--------~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~ 240 (447)
|.|... |++|+.+.|++++|+|+|+. .+++ ++.|||+.......+. ..++||||||++++|+++||..
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~-~~~FGC~~~~~~~~~~--~~~dGIlGLg~~~lSl~sql~~ 144 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIF-NFVFSCAPSLLLKGLP--PGAQGVAGLGRSPLSLPAQLAS 144 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeC-CEEEEcCCcccccCCc--cccccccccCCCccchHHHhhh
Confidence 988765 77998899999999999973 2578 9999999886422121 4589999999999999999875
Q ss_pred c--cCCceEEEeec-CCCCeeEEecCCCCC--------CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCccc
Q 046673 241 D--INHKFSYCLVY-PLASSTLTFGDVDTS--------GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFA 309 (447)
Q Consensus 241 ~--~~~~Fs~~l~~-~~~~G~l~fGg~d~~--------~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~ 309 (447)
. ..++|||||.+ ....|.|+||+.+.. .+.++|+||+.++..+ .+|+|+|++|+||++.+.+++..+.
T Consensus 145 ~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~-~~Y~v~l~~IsVg~~~l~~~~~~~~ 223 (362)
T cd05489 145 AFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKS-GEYYIGVTSIAVNGHAVPLNPTLSA 223 (362)
T ss_pred hcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCC-CceEEEEEEEEECCEECCCCchhcc
Confidence 2 35899999987 345899999999853 3789999999875444 6999999999999999988766655
Q ss_pred ccccccCCCcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCC-CCcccccccCCC-----CCCCCeEEEEEeC
Q 046673 310 IRDVERGLGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTA-TGFELCYRQDPN-----FTDYPSMTLHFQG 383 (447)
Q Consensus 310 ~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~C~~~~~~-----~~~~P~l~f~f~g 383 (447)
... .+.+++||||||++|+||+++|++|.+++.+.+.. ....... .....|+..... ...+|+|+|+|+|
T Consensus 224 ~~~--~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~--~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g 299 (362)
T cd05489 224 NDR--LGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATAR--IPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDG 299 (362)
T ss_pred ccc--cCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcc--cCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeC
Confidence 433 45678999999999999999999999999988763 1111111 223689874321 2479999999987
Q ss_pred --ceEEeCCCceEEEecCCCceEEEEEEcCC----CceeechhhhccEEEEEECCCCEEEEEeC
Q 046673 384 --ADWPLPKEYVYIFNTAGEKYFCVALLPDD----RLTIIGAYHQQNVLVIYDVGNNRLQFAPV 441 (447)
Q Consensus 384 --~~~~l~~~~y~~~~~~~~~~~C~~i~~~~----~~~iLG~~fl~~~yvvfD~~~~~igfa~~ 441 (447)
.++.|++++|+++.. ++.+|++|.+.+ +.||||+.|||++|++||++++|||||+.
T Consensus 300 ~g~~~~l~~~ny~~~~~--~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 300 GGVNWTIFGANSMVQVK--GGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CCeEEEEcCCceEEEcC--CCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 699999999999876 567899987632 37999999999999999999999999974
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.3e-51 Score=409.07 Aligned_cols=311 Identities=19% Similarity=0.289 Sum_probs=240.4
Q ss_pred ccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceeeeE
Q 046673 95 SLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVYDE 174 (447)
Q Consensus 95 ~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~ 174 (447)
..|+++|.||||+|++.|++||||+++||+|..|. +.++.|||++|+||+... |.|.+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~----~~~~~f~~~~SsT~~~~~------------------~~~~i 59 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP----FIHTYFHRELSSTYRDLG------------------KGVTV 59 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc----cccccCCchhCcCcccCC------------------ceEEE
Confidence 47999999999999999999999999999988773 347789999999999987 79999
Q ss_pred ecCCCCeeeEEEEEEEEEecCCC-cceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCCh------------hhhhhhcc
Q 046673 175 RYANGASTKGIASEDLFFFFPDS-IPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLS------------LISQIGGD 241 (447)
Q Consensus 175 ~Y~dg~~~~G~~~~D~v~i~~~~-~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s------------~~~ql~~~ 241 (447)
.|++|+ +.|.+++|+|+|++.. ..+.+.|++.....+. +......+||||||++.++ +++|..
T Consensus 60 ~Yg~Gs-~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~-- 135 (364)
T cd05473 60 PYTQGS-WEGELGTDLVSIPKGPNVTFRANIAAITESENF-FLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTG-- 135 (364)
T ss_pred EECcce-EEEEEEEEEEEECCCCccceEEeeEEEeccccc-eecccccceeeeecccccccCCCCCCCHHHHHHhccC--
Confidence 999998 7999999999998632 2212345666555443 2122357999999998652 344433
Q ss_pred cCCceEEEeec----------CCCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCccc
Q 046673 242 INHKFSYCLVY----------PLASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFA 309 (447)
Q Consensus 242 ~~~~Fs~~l~~----------~~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~ 309 (447)
..++||+||.. ....|.|+|||+|++ .|+++|+|++.. .+|.|++++|+|+++.+..+...+.
T Consensus 136 ~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~-----~~~~v~l~~i~vg~~~~~~~~~~~~ 210 (364)
T cd05473 136 IPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE-----WYYEVIILKLEVGGQSLNLDCKEYN 210 (364)
T ss_pred CccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc-----eeEEEEEEEEEECCEeccccccccc
Confidence 35699998842 124799999999976 889999999875 7999999999999998765433221
Q ss_pred ccccccCCCcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCC---CCcccccccCCC-CCCCCeEEEEEeCc-
Q 046673 310 IRDVERGLGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTA---TGFELCYRQDPN-FTDYPSMTLHFQGA- 384 (447)
Q Consensus 310 ~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~C~~~~~~-~~~~P~l~f~f~g~- 384 (447)
...+||||||++++||+++|++|.+++++.... +..... ....+|+..... ...+|+|+|+|+|.
T Consensus 211 -------~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~ 280 (364)
T cd05473 211 -------YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI---EDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDEN 280 (364)
T ss_pred -------CccEEEeCCCcceeCCHHHHHHHHHHHHhhccc---ccCCccccCcceeecccccCchHhhCCcEEEEEccCC
Confidence 246999999999999999999999999987541 111111 113589865421 22589999999762
Q ss_pred -----eEEeCCCceEEEecCC-CceEEEE--EEcCCCceeechhhhccEEEEEECCCCEEEEEeCCCCCC
Q 046673 385 -----DWPLPKEYVYIFNTAG-EKYFCVA--LLPDDRLTIIGAYHQQNVLVIYDVGNNRLQFAPVVCKGP 446 (447)
Q Consensus 385 -----~~~l~~~~y~~~~~~~-~~~~C~~--i~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~c~~~ 446 (447)
++.|++++|+...... .+..|++ +....+.||||+.|||++|+|||++++|||||+++|.+.
T Consensus 281 ~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 281 SSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred CCceEEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccc
Confidence 6899999999864311 2468986 333345799999999999999999999999999999863
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.1e-49 Score=381.30 Aligned_cols=256 Identities=45% Similarity=0.779 Sum_probs=221.3
Q ss_pred cEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceeeeEe
Q 046673 96 LYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVYDER 175 (447)
Q Consensus 96 ~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~ 175 (447)
+|+++|+||||+|++.|++||||+++||+| |.|.+.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--------------------------------------------~~~~~~ 36 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC--------------------------------------------CSYEYS 36 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------CceEeE
Confidence 599999999999999999999999999985 257889
Q ss_pred cCCCCeeeEEEEEEEEEecCC--CcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCChhhhhhhcccCCceEEEeec-
Q 046673 176 YANGASTKGIASEDLFFFFPD--SIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLSLISQIGGDINHKFSYCLVY- 252 (447)
Q Consensus 176 Y~dg~~~~G~~~~D~v~i~~~--~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~Fs~~l~~- 252 (447)
|+||+.+.|++++|+++|++. .++ ++.|||+....+. .....+||||||+...++++||.... ++||+||.+
T Consensus 37 Y~dg~~~~G~~~~D~v~~g~~~~~~~-~~~Fg~~~~~~~~---~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~~~ 111 (265)
T cd05476 37 YGDGSSTSGVLATETFTFGDSSVSVP-NVAFGCGTDNEGG---SFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLVPH 111 (265)
T ss_pred eCCCceeeeeEEEEEEEecCCCCccC-CEEEEecccccCC---ccCCCCEEEECCCCcccHHHHhhccc-CeeEEEccCC
Confidence 999988999999999999998 788 9999999988652 22679999999999999999997443 699999987
Q ss_pred --CCCCeeEEecCCCCC-CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccCCCcEEEcccCcce
Q 046673 253 --PLASSTLTFGDVDTS-GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERGLGGCIMDSGSAFT 329 (447)
Q Consensus 253 --~~~~G~l~fGg~d~~-~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~ 329 (447)
....|+|+|||+|.+ .+++.|+|++..+... .+|.|+|++|+|+++.+.++...+.... .....+||||||+++
T Consensus 112 ~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~-~~~~v~l~~i~v~~~~~~~~~~~~~~~~--~~~~~ai~DTGTs~~ 188 (265)
T cd05476 112 DDTGGSSPLILGDAADLGGSGVVYTPLVKNPANP-TYYYVNLEGISVGGKRLPIPPSVFAIDS--DGSGGTIIDSGTTLT 188 (265)
T ss_pred CCCCCCCeEEECCcccccCCCceEeecccCCCCC-CceEeeeEEEEECCEEecCCchhccccc--CCCCcEEEeCCCcce
Confidence 356899999999987 7899999999864333 7999999999999998876544332211 345789999999999
Q ss_pred ecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEe-CceEEeCCCceEEEecCCCceEEEEE
Q 046673 330 SMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQ-GADWPLPKEYVYIFNTAGEKYFCVAL 408 (447)
Q Consensus 330 ~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~-g~~~~l~~~~y~~~~~~~~~~~C~~i 408 (447)
+||+++| |+|+|+|+ |.++.+++++|++... ++..|+++
T Consensus 189 ~lp~~~~--------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~~ 228 (265)
T cd05476 189 YLPDPAY--------------------------------------PDLTLHFDGGADLELPPENYFVDVG--EGVVCLAI 228 (265)
T ss_pred EcCcccc--------------------------------------CCEEEEECCCCEEEeCcccEEEECC--CCCEEEEE
Confidence 9998776 58999999 6699999999999655 67899997
Q ss_pred EcC--CCceeechhhhccEEEEEECCCCEEEEEeCCC
Q 046673 409 LPD--DRLTIIGAYHQQNVLVIYDVGNNRLQFAPVVC 443 (447)
Q Consensus 409 ~~~--~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~c 443 (447)
... .+.+|||++|||++|++||++++|||||+++|
T Consensus 229 ~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 229 LSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred ecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 764 45899999999999999999999999999999
No 19
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.1e-49 Score=382.49 Aligned_cols=257 Identities=30% Similarity=0.517 Sum_probs=215.1
Q ss_pred ccEEEEEEecCCCceEeEEEECCCCceeEeC-CCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceeee
Q 046673 95 SLYFVNIGIGRPITQEPLLVDTASDLIWTQC-QPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVYD 173 (447)
Q Consensus 95 ~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~-~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~ 173 (447)
++|+++|.||||+|++.|++||||+++||+| .+|..| . |.|.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------~------------------c~~~ 43 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------Q------------------CDYE 43 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------c------------------CccE
Confidence 4799999999999999999999999999998 467666 1 7899
Q ss_pred EecCCCCeeeEEEEEEEEEecC----CCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCChhhhhhhc--ccCCceE
Q 046673 174 ERYANGASTKGIASEDLFFFFP----DSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLSLISQIGG--DINHKFS 247 (447)
Q Consensus 174 ~~Y~dg~~~~G~~~~D~v~i~~----~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~--~~~~~Fs 247 (447)
+.|+||+.+.|.+++|+|+++. ..++ ++.|||+..+.+.........+||||||+++.++++||.. ..+++||
T Consensus 44 i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~-~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs 122 (273)
T cd05475 44 IEYADGGSSMGVLVTDIFSLKLTNGSRAKP-RIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIG 122 (273)
T ss_pred eEeCCCCceEEEEEEEEEEEeecCCCcccC-CEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEE
Confidence 9999888899999999999963 4677 9999999876543111225689999999999999999874 2378999
Q ss_pred EEeecCCCCeeEEecCCCCCCCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccCCCcEEEcccCc
Q 046673 248 YCLVYPLASSTLTFGDVDTSGLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERGLGGCIMDSGSA 327 (447)
Q Consensus 248 ~~l~~~~~~G~l~fGg~d~~~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~~iiDSGTt 327 (447)
+||.+ ...|.|+||+.....++++|+|+..++. . .+|.|++.+|+||++.+. .+...+||||||+
T Consensus 123 ~~l~~-~~~g~l~~G~~~~~~g~i~ytpl~~~~~-~-~~y~v~l~~i~vg~~~~~------------~~~~~~ivDTGTt 187 (273)
T cd05475 123 HCLSS-NGGGFLFFGDDLVPSSGVTWTPMRRESQ-K-KHYSPGPASLLFNGQPTG------------GKGLEVVFDSGSS 187 (273)
T ss_pred EEccC-CCCeEEEECCCCCCCCCeeecccccCCC-C-CeEEEeEeEEEECCEECc------------CCCceEEEECCCc
Confidence 99987 5579999996543368899999987642 3 699999999999998532 2336799999999
Q ss_pred ceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeC----ceEEeCCCceEEEecCCCce
Q 046673 328 FTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQG----ADWPLPKEYVYIFNTAGEKY 403 (447)
Q Consensus 328 ~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g----~~~~l~~~~y~~~~~~~~~~ 403 (447)
+++||+++| +|+|+|+|++ .+++|++++|++... ++.
T Consensus 188 ~t~lp~~~y-------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~--~~~ 228 (273)
T cd05475 188 YTYFNAQAY-------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE--KGN 228 (273)
T ss_pred eEEcCCccc-------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC--CCC
Confidence 999998765 3689999987 599999999998765 567
Q ss_pred EEEEEEc-C----CCceeechhhhccEEEEEECCCCEEEEEeCCC
Q 046673 404 FCVALLP-D----DRLTIIGAYHQQNVLVIYDVGNNRLQFAPVVC 443 (447)
Q Consensus 404 ~C~~i~~-~----~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~c 443 (447)
.|+++.. . .+.||||+.|||++|++||++++|||||+++|
T Consensus 229 ~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 229 VCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 8999654 2 13799999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5.1e-50 Score=386.21 Aligned_cols=266 Identities=22% Similarity=0.298 Sum_probs=223.3
Q ss_pred EEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceeeeEec
Q 046673 97 YFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVYDERY 176 (447)
Q Consensus 97 Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y 176 (447)
|+++|+||||+|++.|+|||||+++||+|..|..|.|..++.||+++|+|++... .|.|.+.|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~-----------------~~~~~i~Y 63 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP-----------------GATWSISY 63 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC-----------------CcEEEEEe
Confidence 8899999999999999999999999999999999999999999999999998753 27899999
Q ss_pred CCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCCh---------hhhhhhc-ccCCce
Q 046673 177 ANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLS---------LISQIGG-DINHKF 246 (447)
Q Consensus 177 ~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s---------~~~ql~~-~~~~~F 246 (447)
++|+.+.|.+++|+|+|++.+++ ++.|||++...+..+ .....+||||||++..+ +.++|.. ...+.|
T Consensus 64 ~~G~~~~G~~~~D~v~ig~~~~~-~~~fg~~~~~~~~~~-~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~F 141 (278)
T cd06097 64 GDGSSASGIVYTDTVSIGGVEVP-NQAIELATAVSASFF-SDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPLF 141 (278)
T ss_pred CCCCeEEEEEEEEEEEECCEEEC-CeEEEEEeecCcccc-ccccccceeeeccccccccccCCCCCHHHHHHHhccCceE
Confidence 99987999999999999999999 999999998765323 33679999999997654 2333332 236899
Q ss_pred EEEeecCCCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccCCCcEEEcc
Q 046673 247 SYCLVYPLASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERGLGGCIMDS 324 (447)
Q Consensus 247 s~~l~~~~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~~iiDS 324 (447)
|+||.+ ...|+|+|||+|++ .|+++|+|+... . .+|.|++++|+|+++.... .....++|||
T Consensus 142 s~~l~~-~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~-~~w~v~l~~i~v~~~~~~~-----------~~~~~~iiDS 205 (278)
T cd06097 142 TADLRK-AAPGFYTFGYIDESKYKGEISWTPVDNS---S-GFWQFTSTSYTVGGDAPWS-----------RSGFSAIADT 205 (278)
T ss_pred EEEecC-CCCcEEEEeccChHHcCCceEEEEccCC---C-cEEEEEEeeEEECCcceee-----------cCCceEEeec
Confidence 999986 56899999999976 899999999873 1 7999999999999874322 2336799999
Q ss_pred cCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEEecCCCceE
Q 046673 325 GSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIFNTAGEKYF 404 (447)
Q Consensus 325 GTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~ 404 (447)
||+++++|+++++++.+++.+... . .....+.++|.. .+|+|+|+|
T Consensus 206 GTs~~~lP~~~~~~l~~~l~g~~~----~-~~~~~~~~~C~~------~~P~i~f~~----------------------- 251 (278)
T cd06097 206 GTTLILLPDAIVEAYYSQVPGAYY----D-SEYGGWVFPCDT------TLPDLSFAV----------------------- 251 (278)
T ss_pred CCchhcCCHHHHHHHHHhCcCCcc----c-CCCCEEEEECCC------CCCCEEEEE-----------------------
Confidence 999999999999999999843211 0 011234569986 489999999
Q ss_pred EEEEEcCCCceeechhhhccEEEEEECCCCEEEEEe
Q 046673 405 CVALLPDDRLTIIGAYHQQNVLVIYDVGNNRLQFAP 440 (447)
Q Consensus 405 C~~i~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~ 440 (447)
.||||++|||++|+|||++++|||||+
T Consensus 252 ---------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ---------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ---------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 699999999999999999999999996
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.7e-49 Score=387.24 Aligned_cols=297 Identities=25% Similarity=0.429 Sum_probs=252.8
Q ss_pred cEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCC-CCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceeeeE
Q 046673 96 LYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINC-FPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVYDE 174 (447)
Q Consensus 96 ~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c-~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~ 174 (447)
+|+++|.||||+|++.|++||||+++||++..|..| .|.....|++++|+|++... +.+.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~------------------~~~~~ 62 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG------------------KPFSI 62 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE------------------EEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce------------------eeeee
Confidence 599999999999999999999999999999999887 77888999999999999887 78999
Q ss_pred ecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCC-------Chhhhhhhc---ccCC
Q 046673 175 RYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSP-------LSLISQIGG---DINH 244 (447)
Q Consensus 175 ~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~-------~s~~~ql~~---~~~~ 244 (447)
.|++|. ++|.+++|+++|++..++ ++.||++....+..+ .....+||||||++. .+++.+|.. +..+
T Consensus 63 ~y~~g~-~~G~~~~D~v~ig~~~~~-~~~f~~~~~~~~~~~-~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~ 139 (317)
T PF00026_consen 63 SYGDGS-VSGNLVSDTVSIGGLTIP-NQTFGLADSYSGDPF-SPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSN 139 (317)
T ss_dssp EETTEE-EEEEEEEEEEEETTEEEE-EEEEEEEEEEESHHH-HHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSS
T ss_pred eccCcc-cccccccceEeeeecccc-ccceecccccccccc-ccccccccccccCCcccccccCCcceecchhhcccccc
Confidence 999999 999999999999999999 999999999543211 126789999999753 346677654 5789
Q ss_pred ceEEEeec-CCCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccCCCcEE
Q 046673 245 KFSYCLVY-PLASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERGLGGCI 321 (447)
Q Consensus 245 ~Fs~~l~~-~~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~~i 321 (447)
+||++|.+ ....|.|+|||+|.+ .|+++|+|+... .+|.+.+++|.+++..... .....++
T Consensus 140 ~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~-----~~w~v~~~~i~i~~~~~~~-----------~~~~~~~ 203 (317)
T PF00026_consen 140 VFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS-----GYWSVPLDSISIGGESVFS-----------SSGQQAI 203 (317)
T ss_dssp EEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST-----TTTEEEEEEEEETTEEEEE-----------EEEEEEE
T ss_pred ccceeeeecccccchheeeccccccccCceeccCcccc-----ccccccccccccccccccc-----------ccceeee
Confidence 99999998 335799999999977 899999999955 7999999999999983222 2225699
Q ss_pred EcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEEecCCC
Q 046673 322 MDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIFNTAGE 401 (447)
Q Consensus 322 iDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~ 401 (447)
||||+++++||.+++++|++.+.+.... ..+..+|.... .+|.++|+|++.+++|++++|+.+.....
T Consensus 204 ~Dtgt~~i~lp~~~~~~i~~~l~~~~~~--------~~~~~~c~~~~----~~p~l~f~~~~~~~~i~~~~~~~~~~~~~ 271 (317)
T PF00026_consen 204 LDTGTSYIYLPRSIFDAIIKALGGSYSD--------GVYSVPCNSTD----SLPDLTFTFGGVTFTIPPSDYIFKIEDGN 271 (317)
T ss_dssp EETTBSSEEEEHHHHHHHHHHHTTEEEC--------SEEEEETTGGG----GSEEEEEEETTEEEEEEHHHHEEEESSTT
T ss_pred cccccccccccchhhHHHHhhhcccccc--------eeEEEeccccc----ccceEEEeeCCEEEEecchHhcccccccc
Confidence 9999999999999999999999877541 34456999876 79999999999999999999999887444
Q ss_pred ceEEEE-EEc---C--CCceeechhhhccEEEEEECCCCEEEEEeC
Q 046673 402 KYFCVA-LLP---D--DRLTIIGAYHQQNVLVIYDVGNNRLQFAPV 441 (447)
Q Consensus 402 ~~~C~~-i~~---~--~~~~iLG~~fl~~~yvvfD~~~~~igfa~~ 441 (447)
...|+. |.. . .+.+|||.+|||++|++||.+++|||||+|
T Consensus 272 ~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 272 GGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp SSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 458998 766 2 258999999999999999999999999986
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=5.1e-48 Score=375.63 Aligned_cols=271 Identities=21% Similarity=0.337 Sum_probs=230.0
Q ss_pred cEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceeeeEe
Q 046673 96 LYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVYDER 175 (447)
Q Consensus 96 ~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~ 175 (447)
.|+++|.||||+|++.|++||||+++||+ .|.+.
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~----------------------------------------------~~~~~ 35 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP----------------------------------------------DFSIS 35 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee----------------------------------------------eeEEE
Confidence 69999999999999999999999999997 26778
Q ss_pred cCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCC-----------hhhhhhhc---c
Q 046673 176 YANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPL-----------SLISQIGG---D 241 (447)
Q Consensus 176 Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~ql~~---~ 241 (447)
|++|+.+.|.+++|+|++++..++ ++.|||+... ...+||||||++.. ++++||.. +
T Consensus 36 Y~~g~~~~G~~~~D~v~~g~~~~~-~~~fg~~~~~--------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i 106 (295)
T cd05474 36 YGDGTSASGTWGTDTVSIGGATVK-NLQFAVANST--------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLI 106 (295)
T ss_pred eccCCcEEEEEEEEEEEECCeEec-ceEEEEEecC--------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcc
Confidence 999877999999999999999999 9999999984 34689999999876 58888764 4
Q ss_pred cCCceEEEeec-CCCCeeEEecCCCCC--CCCceeeecccCCC--CCCceeEEEEeEEEEcceEeecCCCcccccccccC
Q 046673 242 INHKFSYCLVY-PLASSTLTFGDVDTS--GLPIQSTPFVTPHA--PGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERG 316 (447)
Q Consensus 242 ~~~~Fs~~l~~-~~~~G~l~fGg~d~~--~g~l~~~p~~~~~~--~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 316 (447)
.+++||+||.+ ....|.|+|||+|.+ .|+++|+|+..... .+ .+|.|++++|+|+++.+..+.. ..
T Consensus 107 ~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~-~~~~v~l~~i~v~~~~~~~~~~--------~~ 177 (295)
T cd05474 107 KKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEP-SELSVTLSSISVNGSSGNTTLL--------SK 177 (295)
T ss_pred cceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCc-eEEEEEEEEEEEEcCCCccccc--------CC
Confidence 67899999998 346899999999976 78999999998753 22 6899999999999987653211 34
Q ss_pred CCcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEE
Q 046673 317 LGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIF 396 (447)
Q Consensus 317 ~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~ 396 (447)
...++|||||++++||++++++|++++++.... ....+..+|+... . |+|+|+|+|.++.||+++|+++
T Consensus 178 ~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~------~~~~~~~~C~~~~----~-p~i~f~f~g~~~~i~~~~~~~~ 246 (295)
T cd05474 178 NLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS------DEGLYVVDCDAKD----D-GSLTFNFGGATISVPLSDLVLP 246 (295)
T ss_pred CccEEECCCCccEeCCHHHHHHHHHHhCCEEcC------CCcEEEEeCCCCC----C-CEEEEEECCeEEEEEHHHhEec
Confidence 478999999999999999999999999876441 1234567999876 5 9999999999999999999987
Q ss_pred ecC--CCceEEEE-EEcCC-CceeechhhhccEEEEEECCCCEEEEEeC
Q 046673 397 NTA--GEKYFCVA-LLPDD-RLTIIGAYHQQNVLVIYDVGNNRLQFAPV 441 (447)
Q Consensus 397 ~~~--~~~~~C~~-i~~~~-~~~iLG~~fl~~~yvvfD~~~~~igfa~~ 441 (447)
... .++..|++ |++.+ +.||||++|||++|++||.+++|||||++
T Consensus 247 ~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 247 ASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred cccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 641 13577865 87755 68999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.2e-44 Score=349.21 Aligned_cols=267 Identities=30% Similarity=0.508 Sum_probs=227.9
Q ss_pred EEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCC--CCCCCCCCcceecCCCccccCCCCCCCCCCceeeeE
Q 046673 97 YFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPI--YDPRQSATYGRLPCNDPLCENNREFSCVNDVCVYDE 174 (447)
Q Consensus 97 Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~--y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~ 174 (447)
|+++|.||||+|++.|++||||+++||+|..|..|.+..... |++..|+++.... |.+.+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~------------------~~~~~ 62 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTG------------------CTFSI 62 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCC------------------CEEEE
Confidence 789999999999999999999999999999999998776665 7888888776655 89999
Q ss_pred ecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCC------Chhhhhhhc---ccCCc
Q 046673 175 RYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSP------LSLISQIGG---DINHK 245 (447)
Q Consensus 175 ~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~---~~~~~ 245 (447)
.|++|. +.|.+++|+++|++..++ ++.|||++...+. + .....+||||||+.. .++++||.. +.++.
T Consensus 63 ~Y~~g~-~~g~~~~D~v~~~~~~~~-~~~fg~~~~~~~~-~-~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~ 138 (283)
T cd05471 63 TYGDGS-VTGGLGTDTVTIGGLTIP-NQTFGCATSESGD-F-SSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPV 138 (283)
T ss_pred EECCCe-EEEEEEEeEEEECCEEEe-ceEEEEEeccCCc-c-cccccceEeecCCcccccccCCCHHHHHHHCCCCCCCE
Confidence 999987 999999999999999889 9999999998652 1 236799999999988 789999775 46899
Q ss_pred eEEEeecC---CCCeeEEecCCCCC--CCCceeeecccCCCCCCceeEEEEeEEEEcceEeecCCCcccccccccCCCcE
Q 046673 246 FSYCLVYP---LASSTLTFGDVDTS--GLPIQSTPFVTPHAPGYSNYYLNLIDVSIGTHRMMFPPNTFAIRDVERGLGGC 320 (447)
Q Consensus 246 Fs~~l~~~---~~~G~l~fGg~d~~--~g~l~~~p~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
||+||.+. ...|.|+|||+|.+ .+++.|+|++.. .. .+|.|.+++|.|+++..... .....+
T Consensus 139 Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~-~~~~v~l~~i~v~~~~~~~~----------~~~~~~ 205 (283)
T cd05471 139 FSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GP-GYWQVPLDGISVGGKSVISS----------SGGGGA 205 (283)
T ss_pred EEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CC-CEEEEEeCeEEECCceeeec----------CCCcEE
Confidence 99999972 47899999999976 889999999985 12 79999999999999741110 334679
Q ss_pred EEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEEecCC
Q 046673 321 IMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIFNTAG 400 (447)
Q Consensus 321 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~ 400 (447)
+|||||++++||++++++|++++.+.... ........|.... .+|+|+|+|
T Consensus 206 iiDsGt~~~~lp~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~----~~p~i~f~f------------------- 256 (283)
T cd05471 206 IVDSGTSLIYLPSSVYDAILKALGAAVSS------SDGGYGVDCSPCD----TLPDITFTF------------------- 256 (283)
T ss_pred EEecCCCCEeCCHHHHHHHHHHhCCcccc------cCCcEEEeCcccC----cCCCEEEEE-------------------
Confidence 99999999999999999999999887651 1123344666666 899999999
Q ss_pred CceEEEEEEcCCCceeechhhhccEEEEEECCCCEEEEEe
Q 046673 401 EKYFCVALLPDDRLTIIGAYHQQNVLVIYDVGNNRLQFAP 440 (447)
Q Consensus 401 ~~~~C~~i~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~ 440 (447)
.+|||++|||++|++||+++++||||+
T Consensus 257 -------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 689999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=2.8e-30 Score=228.36 Aligned_cols=153 Identities=44% Similarity=0.884 Sum_probs=127.7
Q ss_pred EEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCC--CCC--CCceee
Q 046673 97 YFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREF--SCV--NDVCVY 172 (447)
Q Consensus 97 Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~--~C~--~~~~~~ 172 (447)
|+++|.||||+|++.|++||||+++|++| ..+.|+|.+|+||+.+.|.++.|...+.. .|. ++.|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999997 57899999999999999999999988753 333 689999
Q ss_pred eEecCCCCeeeEEEEEEEEEecCC-----CcceeeEeeeeecCCCCCCCCCCCcceEEeeCCCCChhhhhhhcccCCceE
Q 046673 173 DERYANGASTKGIASEDLFFFFPD-----SIPEFLVFGCSDDNQGFPFGPDNRISGILGLSMSPLSLISQIGGDINHKFS 247 (447)
Q Consensus 173 ~~~Y~dg~~~~G~~~~D~v~i~~~-----~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~Fs 247 (447)
.+.|++++.+.|.+++|+|+++.. .++ ++.|||++...+. + ...+||||||+++.||++||++...++||
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~-~~~FGC~~~~~g~-~---~~~~GilGLg~~~~Sl~sQl~~~~~~~FS 146 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVP-DFIFGCATSNSGL-F---YGADGILGLGRGPLSLPSQLASSSGNKFS 146 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEE-EEEEEEE-GGGTS-S---TTEEEEEE-SSSTTSHHHHHHHH--SEEE
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceee-eEEEEeeeccccC-C---cCCCcccccCCCcccHHHHHHHhcCCeEE
Confidence 999999999999999999999853 466 9999999999876 4 58999999999999999999665699999
Q ss_pred EEeec--CCCCeeEEecC
Q 046673 248 YCLVY--PLASSTLTFGD 263 (447)
Q Consensus 248 ~~l~~--~~~~G~l~fGg 263 (447)
|||.+ ....|.|+||+
T Consensus 147 yCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 147 YCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEB-S-SSSSEEEEEECS
T ss_pred EECCCCCCCCCEEEEeCc
Confidence 99998 56889999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.94 E-value=8.2e-26 Score=199.58 Aligned_cols=150 Identities=35% Similarity=0.768 Sum_probs=120.4
Q ss_pred eeEEEEeEEEEcceEeecCCCcccccccccCCCcEEEcccCcceecChhHHHHHHHHHHHHhhhccccc-ccCCCCcccc
Q 046673 286 NYYLNLIDVSIGTHRMMFPPNTFAIRDVERGLGGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIR-VQTATGFELC 364 (447)
Q Consensus 286 ~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~C 364 (447)
+|+|+|++|+||++++.++...|+. . ++.++++|||||++|+||+++|++|.+++.+.+...+.++ ......+..|
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~--~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~C 77 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-S--DGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLC 77 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-T--TSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-E
T ss_pred CccEEEEEEEECCEEecCChHHhhc-c--CCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCce
Confidence 5899999999999999999998876 4 6779999999999999999999999999999988533222 3334677899
Q ss_pred cccCC-----CCCCCCeEEEEEeCc-eEEeCCCceEEEecCCCceEEEEEEcC----CCceeechhhhccEEEEEECCCC
Q 046673 365 YRQDP-----NFTDYPSMTLHFQGA-DWPLPKEYVYIFNTAGEKYFCVALLPD----DRLTIIGAYHQQNVLVIYDVGNN 434 (447)
Q Consensus 365 ~~~~~-----~~~~~P~l~f~f~g~-~~~l~~~~y~~~~~~~~~~~C~~i~~~----~~~~iLG~~fl~~~yvvfD~~~~ 434 (447)
++.+. ....+|+|+|+|.|+ +++|++++|++... ++.+|++|.++ ++..|||+.+|+++.++||++++
T Consensus 78 y~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~--~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~ 155 (161)
T PF14541_consen 78 YNLSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS--PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENG 155 (161)
T ss_dssp EEGGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC--TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTT
T ss_pred eeccccccccccccCCeEEEEEeCCcceeeeccceeeecc--CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCC
Confidence 99887 256899999999965 99999999999988 78999998776 35899999999999999999999
Q ss_pred EEEEEe
Q 046673 435 RLQFAP 440 (447)
Q Consensus 435 ~igfa~ 440 (447)
||||+|
T Consensus 156 ~igF~~ 161 (161)
T PF14541_consen 156 RIGFAP 161 (161)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999997
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=1.1e-23 Score=173.54 Aligned_cols=108 Identities=31% Similarity=0.524 Sum_probs=97.0
Q ss_pred EEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCC-CCCCCCCcceecCCCccccCCCCCCCCCCceeeeEecC
Q 046673 99 VNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIY-DPRQSATYGRLPCNDPLCENNREFSCVNDVCVYDERYA 177 (447)
Q Consensus 99 ~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y-~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y~ 177 (447)
++|.||||+|++.|+|||||+++||+|..|..|.+..++.| +|+.|++++... |.|.+.|+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~------------------~~~~~~Y~ 62 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG------------------CTFSITYG 62 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC------------------cEEEEEeC
Confidence 47899999999999999999999999999999988888777 999999998876 89999999
Q ss_pred CCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEee
Q 046673 178 NGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGL 227 (447)
Q Consensus 178 dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGL 227 (447)
+|+ +.|.++.|+|+|++..++ ++.|||++...+..+ .....+|||||
T Consensus 63 ~g~-~~g~~~~D~v~ig~~~~~-~~~fg~~~~~~~~~~-~~~~~~GilGL 109 (109)
T cd05470 63 TGS-LSGGLSTDTVSIGDIEVV-GQAFGCATDEPGATF-LPALFDGILGL 109 (109)
T ss_pred CCe-EEEEEEEEEEEECCEEEC-CEEEEEEEecCCccc-cccccccccCC
Confidence 997 889999999999999999 999999999876522 23578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.98 E-value=2.4e-05 Score=62.09 Aligned_cols=93 Identities=13% Similarity=0.016 Sum_probs=66.6
Q ss_pred cEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceeeeEe
Q 046673 96 LYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVYDER 175 (447)
Q Consensus 96 ~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~ 175 (447)
.|++++.|+ .+++.+++|||++.+|+.......+.. .+. . .....+.
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~----~~~--------~-------------------~~~~~~~ 48 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL----PLT--------L-------------------GGKVTVQ 48 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC----Ccc--------C-------------------CCcEEEE
Confidence 689999999 699999999999999997542111100 000 0 1345566
Q ss_pred cCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCC
Q 046673 176 YANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSM 229 (447)
Q Consensus 176 Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~ 229 (447)
..+|.........+.+++|+..++ ++.+....... ...+||||+.+
T Consensus 49 ~~~G~~~~~~~~~~~i~ig~~~~~-~~~~~v~d~~~-------~~~~gIlG~d~ 94 (96)
T cd05483 49 TANGRVRAARVRLDSLQIGGITLR-NVPAVVLPGDA-------LGVDGLLGMDF 94 (96)
T ss_pred ecCCCccceEEEcceEEECCcEEe-ccEEEEeCCcc-------cCCceEeChHH
Confidence 777775666666899999999888 88888876653 15789999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.42 E-value=0.013 Score=48.76 Aligned_cols=96 Identities=14% Similarity=0.060 Sum_probs=63.0
Q ss_pred cCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceee
Q 046673 93 QSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVY 172 (447)
Q Consensus 93 ~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~ 172 (447)
.++.|++++.|. .+++.++||||++.+-+...--... + .++.. . ....
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L-----g-l~~~~------~------------------~~~~ 55 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL-----G-LDLNR------L------------------GYTV 55 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc-----C-CCccc------C------------------CceE
Confidence 578999999997 5899999999999998764310000 0 11110 0 0123
Q ss_pred eEecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCC
Q 046673 173 DERYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSM 229 (447)
Q Consensus 173 ~~~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~ 229 (447)
.+.=+.|......+.-|.+++|+..+. ++.+.+.... ...+|+||+.+
T Consensus 56 ~~~ta~G~~~~~~~~l~~l~iG~~~~~-nv~~~v~~~~--------~~~~~LLGm~f 103 (121)
T TIGR02281 56 TVSTANGQIKAARVTLDRVAIGGIVVN-DVDAMVAEGG--------ALSESLLGMSF 103 (121)
T ss_pred EEEeCCCcEEEEEEEeCEEEECCEEEe-CcEEEEeCCC--------cCCceEcCHHH
Confidence 334456664445567899999999988 8888776433 12469999864
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.86 E-value=0.063 Score=41.52 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=54.4
Q ss_pred EEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceeeeEecCCC
Q 046673 100 NIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVYDERYANG 179 (447)
Q Consensus 100 ~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y~dg 179 (447)
++.|+ .+++.+++|||++.+.+...-..... ..+.... ....+.-.+|
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~~~------------------------~~~~~~~~~g 49 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISRSLAKKLG------LKPRPKS------------------------VPISVSGAGG 49 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC------CCCcCCc------------------------eeEEEEeCCC
Confidence 56676 58999999999998887643221110 0010000 1223333455
Q ss_pred CeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCC
Q 046673 180 ASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSM 229 (447)
Q Consensus 180 ~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~ 229 (447)
.........+.+++++..+. ++.|-..... ...+||||+-+
T Consensus 50 ~~~~~~~~~~~i~ig~~~~~-~~~~~v~~~~--------~~~~~iLG~df 90 (90)
T PF13650_consen 50 SVTVYRGRVDSITIGGITLK-NVPFLVVDLG--------DPIDGILGMDF 90 (90)
T ss_pred CEEEEEEEEEEEEECCEEEE-eEEEEEECCC--------CCCEEEeCCcC
Confidence 54445566778999998887 7877766621 46789999743
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.35 E-value=0.043 Score=45.89 Aligned_cols=94 Identities=15% Similarity=0.086 Sum_probs=52.3
Q ss_pred cEEEcccCcceecChhHHHHHHHHHHHHhhhcccc-cccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEEe
Q 046673 319 GCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLI-RVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIFN 397 (447)
Q Consensus 319 ~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~~ 397 (447)
.++||||++.+.++++..+++--....... .. ...+... ..|.- ......+++++..+.+ +++
T Consensus 29 ~~LvDTGAs~s~Is~~~a~~lgl~~~~~~~---~~~~~~g~g~-~~~~g------~~~~~~l~i~~~~~~~---~~~--- 92 (124)
T cd05479 29 KAFVDSGAQMTIMSKACAEKCGLMRLIDKR---FQGIAKGVGT-QKILG------RIHLAQVKIGNLFLPC---SFT--- 92 (124)
T ss_pred EEEEeCCCceEEeCHHHHHHcCCccccCcc---eEEEEecCCC-cEEEe------EEEEEEEEECCEEeee---EEE---
Confidence 489999999999999887764321111000 00 0010011 11110 1224445554444321 111
Q ss_pred cCCCceEEEEEEcC-CCceeechhhhccEEEEEECCCCEEEE
Q 046673 398 TAGEKYFCVALLPD-DRLTIIGAYHQQNVLVIYDVGNNRLQF 438 (447)
Q Consensus 398 ~~~~~~~C~~i~~~-~~~~iLG~~fl~~~yvvfD~~~~~igf 438 (447)
+.+. .-..|||..||+.+-.+.|+.+.+|-+
T Consensus 93 ----------Vl~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 93 ----------VLEDDDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred ----------EECCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 1121 237899999999999999999998853
No 31
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=94.03 E-value=0.11 Score=44.02 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=55.8
Q ss_pred cEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEEec
Q 046673 319 GCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIFNT 398 (447)
Q Consensus 319 ~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~ 398 (447)
.++||||++-.++..+...++--.+...-. .-......+...|.. ..+.+.+.++|.++.... ++++..
T Consensus 34 ~vLiDSGAThsFIs~~~a~~~~l~~~~l~~---~~~V~~~g~~~~~~~------~~~~~~~~i~g~~~~~dl--~vl~l~ 102 (135)
T PF08284_consen 34 SVLIDSGATHSFISSSFAKKLGLPLEPLPR---PIVVSAPGGSINCEG------VCPDVPLSIQGHEFVVDL--LVLDLG 102 (135)
T ss_pred EEEEecCCCcEEccHHHHHhcCCEEEEccC---eeEEecccccccccc------eeeeEEEEECCeEEEeee--EEeccc
Confidence 489999999999987766543321111100 000000111112221 345555555554432211 122211
Q ss_pred CCCceEEEEEEcCCCceeechhhhccEEEEEECCCCEEEEEe
Q 046673 399 AGEKYFCVALLPDDRLTIIGAYHQQNVLVIYDVGNNRLQFAP 440 (447)
Q Consensus 399 ~~~~~~C~~i~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~ 440 (447)
+-..|||.++|+.+...-|+.+++|-|..
T Consensus 103 -------------~~DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 103 -------------GYDVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred -------------ceeeEeccchHHhCCCEEEccCCEEEEeC
Confidence 12799999999999999999999999975
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.73 E-value=0.38 Score=40.13 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=58.1
Q ss_pred cCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCCCCCceee
Q 046673 93 QSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSCVNDVCVY 172 (447)
Q Consensus 93 ~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~ 172 (447)
....+++++.|+ ++++.+++|||++.+++...-+..+..... .. ..+
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~~lgl~~~------~~-------------------------~~~ 59 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAEKCGLMRL------ID-------------------------KRF 59 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHHHcCCccc------cC-------------------------cce
Confidence 456788999998 689999999999999987543332211100 00 111
Q ss_pred e-EecC-CCCeeeEEEEEEEEEecCCCcceeeEeeeeecCCCCCCCCCCCcceEEeeCC
Q 046673 173 D-ERYA-NGASTKGIASEDLFFFFPDSIPEFLVFGCSDDNQGFPFGPDNRISGILGLSM 229 (447)
Q Consensus 173 ~-~~Y~-dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~ 229 (447)
. ...+ ++....|....+.+.+++...+ +.|.+... ...++|||+-|
T Consensus 60 ~~~~~g~g~~~~~g~~~~~~l~i~~~~~~--~~~~Vl~~---------~~~d~ILG~d~ 107 (124)
T cd05479 60 QGIAKGVGTQKILGRIHLAQVKIGNLFLP--CSFTVLED---------DDVDFLIGLDM 107 (124)
T ss_pred EEEEecCCCcEEEeEEEEEEEEECCEEee--eEEEEECC---------CCcCEEecHHH
Confidence 1 2233 2233557677788999887654 56655432 35689999854
No 33
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=92.41 E-value=2.5 Score=41.59 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=33.0
Q ss_pred ecCCCCeeeEEEEEEEEEecCCCcceeeEeeeeecC-----------CC--CCCCCCCCcceEEeeCCC
Q 046673 175 RYANGASTKGIASEDLFFFFPDSIPEFLVFGCSDDN-----------QG--FPFGPDNRISGILGLSMS 230 (447)
Q Consensus 175 ~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~~~~~-----------~~--~~~~~~~~~~GIlGLg~~ 230 (447)
.|++|. .=|-+.+-.|+|++.... .+.+.++.+. .+ ..-..+....||||+|.-
T Consensus 83 ~F~sgy-tWGsVr~AdV~igge~A~-~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 83 QFASGY-TWGSVRTADVTIGGETAS-SIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hccCcc-cccceEEEEEEEcCeecc-ccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 466766 558888999999977544 4444444221 00 001123568999999974
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=89.90 E-value=0.38 Score=37.59 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=24.4
Q ss_pred EEEEEEecCCCceEeEEEECCCCceeEeCC
Q 046673 97 YFVNIGIGRPITQEPLLVDTASDLIWTQCQ 126 (447)
Q Consensus 97 Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~ 126 (447)
|++++.|+ .+++.+++||||+.+++...
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 56788898 69999999999999999754
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=87.07 E-value=3.3 Score=31.90 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=19.0
Q ss_pred cEEEcccCcceecChhHHHHH
Q 046673 319 GCIMDSGSAFTSMERTPYRQV 339 (447)
Q Consensus 319 ~~iiDSGTt~~~lp~~~~~~l 339 (447)
..++|||.+.+.++++..+.+
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 489999999999999988876
No 36
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=85.40 E-value=3.1 Score=36.12 Aligned_cols=84 Identities=11% Similarity=-0.047 Sum_probs=45.3
Q ss_pred CcEEEcccCcceecChhHHHHHHHHHHHHhhhcccccccCCCCcccccccCCCCCCCCeEEEEEeCceEEeCCCceEEEe
Q 046673 318 GGCIMDSGSAFTSMERTPYRQVLEQFMAYFERFHLIRVQTATGFELCYRQDPNFTDYPSMTLHFQGADWPLPKEYVYIFN 397 (447)
Q Consensus 318 ~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~l~f~f~g~~~~l~~~~y~~~~ 397 (447)
..++||||+...++-.++.+.|-=..-..-.- .++-.. +.....|... -.+.|..++..++++ .|+.+.
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL~L~~~~app~-~fRG~v-s~~~~~tsEA-------v~ld~~i~n~~i~i~--aYV~d~ 114 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKLELPTHDAPPF-RFRGFV-SGESATTSEA-------VTLDFYIDNKLIDIA--AYVTDN 114 (177)
T ss_pred EEEEEeCCCccceeehhhHHhhCCccccCCCE-EEeeec-cCCceEEEEe-------EEEEEEECCeEEEEE--EEEecc
Confidence 35999999999999888777664332111000 000000 0111234332 255555555554443 344433
Q ss_pred cCCCceEEEEEEcCCCceeechhhhccE
Q 046673 398 TAGEKYFCVALLPDDRLTIIGAYHQQNV 425 (447)
Q Consensus 398 ~~~~~~~C~~i~~~~~~~iLG~~fl~~~ 425 (447)
- +...|||+++||.+
T Consensus 115 m-------------~~dlIIGnPiL~ry 129 (177)
T PF12384_consen 115 M-------------DHDLIIGNPILDRY 129 (177)
T ss_pred C-------------CcceEeccHHHhhh
Confidence 2 34789999999987
No 37
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=85.07 E-value=2 Score=35.69 Aligned_cols=35 Identities=9% Similarity=0.349 Sum_probs=27.8
Q ss_pred ceeEEEEeEEEEcceEeecCCCcccccccccCCCcEEEcccCcceecChhHHHHH
Q 046673 285 SNYYLNLIDVSIGTHRMMFPPNTFAIRDVERGLGGCIMDSGSAFTSMERTPYRQV 339 (447)
Q Consensus 285 ~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 339 (447)
++|.++ +.|+|+.+ .++||||.+.+.++++..+++
T Consensus 10 g~~~v~---~~InG~~~-----------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRNV-----------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEEE-----------------EEEEECCCCcEEcCHHHHHHc
Confidence 677655 46788753 499999999999999988765
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.04 E-value=1.5 Score=32.60 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=28.3
Q ss_pred cCccEEEEEEecCCCceEeEEEECCCCceeEeCCC
Q 046673 93 QSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQP 127 (447)
Q Consensus 93 ~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~ 127 (447)
..+.+++.+.||. +.+.+++|||++...|...-
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~ 37 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISESL 37 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHHH
Confidence 3578999999995 99999999999999887543
No 39
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=83.68 E-value=4.1 Score=36.73 Aligned_cols=87 Identities=11% Similarity=-0.015 Sum_probs=59.4
Q ss_pred cccee-ccCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCCCcceecCCCccccCCCCCCC
Q 046673 87 PITMN-TQSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINCFPQTFPIYDPRQSATYGRLPCNDPLCENNREFSC 165 (447)
Q Consensus 87 ~~~l~-~~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~C 165 (447)
++.+. ..++.|.++..|- .|++.++||||-+.+-+.... ...--+|.....
T Consensus 95 ~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~d------A~RlGid~~~l~-------------------- 146 (215)
T COG3577 95 EVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEED------ARRLGIDLNSLD-------------------- 146 (215)
T ss_pred EEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHH------HHHhCCCccccC--------------------
Confidence 44444 4889999999997 799999999999988876432 111223333211
Q ss_pred CCCceeeeEecCCCCeeeEEEEEEEEEecCCCcceeeEeee
Q 046673 166 VNDVCVYDERYANGASTKGIASEDLFFFFPDSIPEFLVFGC 206 (447)
Q Consensus 166 ~~~~~~~~~~Y~dg~~~~G~~~~D~v~i~~~~~~~~~~fg~ 206 (447)
.++.+.-.+|.......-.|.+.||+..+. ++.--+
T Consensus 147 ----y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~-nV~A~V 182 (215)
T COG3577 147 ----YTITVSTANGRARAAPVTLDRVQIGGIRVK-NVDAMV 182 (215)
T ss_pred ----CceEEEccCCccccceEEeeeEEEccEEEc-Cchhhe
Confidence 456666788885556678999999987766 554433
No 40
>PF13650 Asp_protease_2: Aspartyl protease
Probab=80.86 E-value=2.1 Score=32.69 Aligned_cols=21 Identities=14% Similarity=0.483 Sum_probs=18.9
Q ss_pred cEEEcccCcceecChhHHHHH
Q 046673 319 GCIMDSGSAFTSMERTPYRQV 339 (447)
Q Consensus 319 ~~iiDSGTt~~~lp~~~~~~l 339 (447)
.++||||++.+.+.++.++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 499999999999999888776
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=76.86 E-value=5.1 Score=29.72 Aligned_cols=21 Identities=10% Similarity=0.351 Sum_probs=19.3
Q ss_pred cEEEcccCcceecChhHHHHH
Q 046673 319 GCIMDSGSAFTSMERTPYRQV 339 (447)
Q Consensus 319 ~~iiDSGTt~~~lp~~~~~~l 339 (447)
.+++|||.+..+++.+..+.+
T Consensus 21 ~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 21 KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEEeCCCcceecCHHHHHHh
Confidence 399999999999999998887
No 42
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=76.83 E-value=3.6 Score=31.98 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.9
Q ss_pred EEEcccCcceecChhHHHHHH
Q 046673 320 CIMDSGSAFTSMERTPYRQVL 340 (447)
Q Consensus 320 ~iiDSGTt~~~lp~~~~~~l~ 340 (447)
+++|||++.+.++++.+.++-
T Consensus 14 ~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 14 FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEcCCcceEEeCHHHHHHhC
Confidence 899999999999999888663
No 43
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=76.65 E-value=4.1 Score=32.13 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=21.9
Q ss_pred EEEEEecCCCceEeEEEECCCCceeEeCC
Q 046673 98 FVNIGIGRPITQEPLLVDTASDLIWTQCQ 126 (447)
Q Consensus 98 ~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~ 126 (447)
..+|.|. .+++.+++||||+.+-|+..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 3566676 48999999999999998754
No 44
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=74.46 E-value=5.7 Score=32.13 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.9
Q ss_pred CceeechhhhccEEEEEECCCCEE
Q 046673 413 RLTIIGAYHQQNVLVIYDVGNNRL 436 (447)
Q Consensus 413 ~~~iLG~~fl~~~yvvfD~~~~~i 436 (447)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 478999999999999999987753
No 45
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=72.86 E-value=6.3 Score=30.34 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=18.4
Q ss_pred cEEEcccCcceecChhHHHHH
Q 046673 319 GCIMDSGSAFTSMERTPYRQV 339 (447)
Q Consensus 319 ~~iiDSGTt~~~lp~~~~~~l 339 (447)
.++||||++.+.++.+..+++
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 499999999999999877765
No 46
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=68.66 E-value=10 Score=31.59 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=16.3
Q ss_pred EEEcccCcceecChhHHHHH
Q 046673 320 CIMDSGSAFTSMERTPYRQV 339 (447)
Q Consensus 320 ~iiDSGTt~~~lp~~~~~~l 339 (447)
++||||+-.+.++.+..+++
T Consensus 38 A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 38 AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETT-SS-EEEHHHHHHT
T ss_pred EEEeCCCCccccCHHHHHHc
Confidence 99999999999999988873
No 47
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=68.04 E-value=7.1 Score=30.33 Aligned_cols=25 Identities=20% Similarity=0.046 Sum_probs=20.7
Q ss_pred EEEecCCCceEeEEEECCCCceeEeCC
Q 046673 100 NIGIGRPITQEPLLVDTASDLIWTQCQ 126 (447)
Q Consensus 100 ~i~iGtP~Q~~~~~~DTGS~~~Wv~~~ 126 (447)
.+.|+ .|.+++++|||.+++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 35566 69999999999999998743
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=66.51 E-value=7.3 Score=29.95 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=19.9
Q ss_pred EEecCCCceEeEEEECCCCceeEeCC
Q 046673 101 IGIGRPITQEPLLVDTASDLIWTQCQ 126 (447)
Q Consensus 101 i~iGtP~Q~~~~~~DTGS~~~Wv~~~ 126 (447)
+.|. ++++.+++|||.+.+-+...
T Consensus 3 v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 3 ITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEC--CEEEEEEEECCCCeEEECHH
Confidence 4554 68999999999999999754
No 49
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=64.45 E-value=12 Score=33.96 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=19.3
Q ss_pred CceeechhhhccEEEEEECCCCEEEEEe
Q 046673 413 RLTIIGAYHQQNVLVIYDVGNNRLQFAP 440 (447)
Q Consensus 413 ~~~iLG~~fl~~~yvvfD~~~~~igfa~ 440 (447)
-..|||+.|+|.|+=....+ .+|-|-.
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 38999999999886555554 4566643
No 50
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=56.75 E-value=10 Score=29.76 Aligned_cols=17 Identities=12% Similarity=0.411 Sum_probs=14.7
Q ss_pred cEEEcccCcceecChhH
Q 046673 319 GCIMDSGSAFTSMERTP 335 (447)
Q Consensus 319 ~~iiDSGTt~~~lp~~~ 335 (447)
.++||||+..+.++.+.
T Consensus 18 ~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 18 KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEETTBSSEEESSGG
T ss_pred EEEEecCCCcceecccc
Confidence 39999999999999653
No 51
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=51.49 E-value=20 Score=31.27 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=21.9
Q ss_pred EEEEEecCCCceEeEEEECCCCceeEeC
Q 046673 98 FVNIGIGRPITQEPLLVDTASDLIWTQC 125 (447)
Q Consensus 98 ~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~ 125 (447)
...+.++....+++++|||||....|..
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeeh
Confidence 3445555567899999999999988864
No 52
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=48.03 E-value=57 Score=29.62 Aligned_cols=35 Identities=11% Similarity=0.315 Sum_probs=27.9
Q ss_pred ceeEEEEeEEEEcceEeecCCCcccccccccCCCcEEEcccCcceecChhHHHHH
Q 046673 285 SNYYLNLIDVSIGTHRMMFPPNTFAIRDVERGLGGCIMDSGSAFTSMERTPYRQV 339 (447)
Q Consensus 285 ~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 339 (447)
++|.++ ..|||+.+. .++|||.|.+.++++...++
T Consensus 104 GHF~a~---~~VNGk~v~-----------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 104 GHFEAN---GRVNGKKVD-----------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CcEEEE---EEECCEEEE-----------------EEEecCcceeecCHHHHHHh
Confidence 677765 468998764 89999999999998776554
No 53
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=47.40 E-value=21 Score=27.93 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=19.3
Q ss_pred cEEEcccCcceecChhHHHHHH
Q 046673 319 GCIMDSGSAFTSMERTPYRQVL 340 (447)
Q Consensus 319 ~~iiDSGTt~~~lp~~~~~~l~ 340 (447)
.+.+|||++...+|...+.++.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 4899999999999988887765
No 54
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=47.06 E-value=13 Score=30.80 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=18.4
Q ss_pred EEEcccCc-ceecChhHHHHHH
Q 046673 320 CIMDSGSA-FTSMERTPYRQVL 340 (447)
Q Consensus 320 ~iiDSGTt-~~~lp~~~~~~l~ 340 (447)
.+||||-+ ++.+|+++++++-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 48999999 9999999988763
No 55
>PLN03207 stomagen; Provisional
Probab=34.30 E-value=35 Score=26.80 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=13.5
Q ss_pred ccchhhHHHHHHHHHHHhhhhhccccC
Q 046673 3 QIHQSFLVLTFFCCLALLSQSHFTASK 29 (447)
Q Consensus 3 m~~~~~~~~~~~~~l~~~~~~~~~~a~ 29 (447)
|++.+.+.|++|++..++++.....+.
T Consensus 7 ~~tt~~~~lffLl~~llla~~v~qgsr 33 (113)
T PLN03207 7 TATTRCLTLFFLLFFLLLGAYVIQGSR 33 (113)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhccc
Confidence 455556666555544444444433333
No 56
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=32.42 E-value=2.3e+02 Score=28.11 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=30.3
Q ss_pred EEE-EEcCC-CceeechhhhccEEEEEECCCCEEEEEeCC
Q 046673 405 CVA-LLPDD-RLTIIGAYHQQNVLVIYDVGNNRLQFAPVV 442 (447)
Q Consensus 405 C~~-i~~~~-~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 442 (447)
|-+ ++... -...||...||.+--.-|++++++=|+...
T Consensus 308 c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~ 347 (380)
T KOG0012|consen 308 CSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTE 347 (380)
T ss_pred cceEEecCCCcchhhhHHHHHhccceeecccCeEEecCCC
Confidence 666 44433 378999999999999999999998887554
No 57
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=30.86 E-value=85 Score=26.12 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=24.2
Q ss_pred cCccEEEEEEecCCCceEeEEEECCCCceeEeCCCCCCC
Q 046673 93 QSSLYFVNIGIGRPITQEPLLVDTASDLIWTQCQPCINC 131 (447)
Q Consensus 93 ~~~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~c 131 (447)
....+++++.|+ .+++...+|||...+-+...-+..|
T Consensus 21 ~v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 21 QVSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp -----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHT
T ss_pred CcceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHc
Confidence 356888999999 5999999999999998875432444
No 58
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=27.37 E-value=78 Score=25.42 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=19.6
Q ss_pred EEEEecCCC----ceEeEEEECCCCcee-Ee
Q 046673 99 VNIGIGRPI----TQEPLLVDTASDLIW-TQ 124 (447)
Q Consensus 99 ~~i~iGtP~----Q~~~~~~DTGS~~~W-v~ 124 (447)
+++.|..|. -++.+++|||-+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 577888873 268999999998764 44
No 59
>PRK02710 plastocyanin; Provisional
Probab=27.24 E-value=87 Score=25.66 Aligned_cols=35 Identities=0% Similarity=0.011 Sum_probs=17.1
Q ss_pred ccchhhHHHHHHHHHHHhhhhhccccCCCCeeEEEE
Q 046673 3 QIHQSFLVLTFFCCLALLSQSHFTASKSDGLIRLQL 38 (447)
Q Consensus 3 m~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~l~l 38 (447)
|+...++.+..+++++...+++...|..... ++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~-~V~~ 35 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSASAETV-EVKM 35 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhcccccccceE-EEEE
Confidence 4454444444444444444444444444455 6666
No 60
>PF15240 Pro-rich: Proline-rich
Probab=20.98 E-value=56 Score=28.92 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=5.8
Q ss_pred HhhhhhccccCCC
Q 046673 19 LLSQSHFTASKSD 31 (447)
Q Consensus 19 ~~~~~~~~~a~~~ 31 (447)
+|.|||+|...+.
T Consensus 9 ALLALSSAQ~~dE 21 (179)
T PF15240_consen 9 ALLALSSAQSTDE 21 (179)
T ss_pred HHHHhhhcccccc
Confidence 3444455554433
No 61
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=20.84 E-value=1.3e+02 Score=28.50 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=23.3
Q ss_pred CccEEEE---EEecC---CCceEeEEEECCCCceeEeCC
Q 046673 94 SSLYFVN---IGIGR---PITQEPLLVDTASDLIWTQCQ 126 (447)
Q Consensus 94 ~~~Y~~~---i~iGt---P~Q~~~~~~DTGS~~~Wv~~~ 126 (447)
...|.++ |.||. +.....+++|||++.+.++..
T Consensus 156 ~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 156 KKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 3566655 57773 223467999999999999854
No 62
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=20.45 E-value=4.4e+02 Score=21.18 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=15.4
Q ss_pred CCccchhhHHHHHHHHHHHhhhhh
Q 046673 1 MSQIHQSFLVLTFFCCLALLSQSH 24 (447)
Q Consensus 1 ~~m~~~~~~~~~~~~~l~~~~~~~ 24 (447)
|.|++...+.|++.++|+.++.+.
T Consensus 1 ~~~~mk~~~~l~~~l~LS~~s~~~ 24 (104)
T PRK14864 1 RNMVMRRFASLLLTLLLSACSALQ 24 (104)
T ss_pred CchHHHHHHHHHHHHHHhhhhhcc
Confidence 456777766776666666665555
Done!