Citrus Sinensis ID: 046674

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
MSTTILIRVDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTYREKIVVPADKPFITISGTKASNTIITWSDGGEIFQSATFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAFYGCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNGAITAQKRVSSEENTGFTFLGCKITGVGKAVLGRPWGPYSRVVYALTYMSGLVLPQGWNDWHDYAKHTNVYYGEYKCYGPGADRSSRVA
ccccEEEEEccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEcccccEEEEEcccccccccEEEEEEcccEEEEccEEEEcccccccEEEEEEcccEEEEEccEEEEccccEEcccccEEEEccEEEEEEEEEEcccEEEEEccEEEEEcccccEEEEcccccccccEEEEEEccEEEEccccEEccccccccEEEEEEcccccccccccccccccccccccEEEEEEcccccccccccccc
ccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccEcEEEEEEEcccEEEEEEEEEcccccccccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccEEEEccccccccccEEEEEccEEEEcccccEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccc
MSTTILIRVdqsgrgdfkKIQDaidsvpsnnsklyfiwikpgtyrekivvpadkpfitisgtkasntiitwsdggeifqsaTFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAFYGCRILSYQDtllddtgnhyysscyiegatdFICGNAASLFErchihslstgngaitaqkrvsseentgftflgckitgvgkavlgrpwgpySRVVYALTYMSglvlpqgwndwhdyakhtnvyygeykcygpgadrssrva
msttilirvdqsgrgdfkkiqdaidsvpsnnskLYFIWIKPGTYREKIVVPADKPFITISGTKASNTIITWSDGGEIFQSATFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAFYGCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNGAITAQKRVSSEENTGFTFLGCKITGVGKAVLGRPWGPYSRVVYALTYMSGLVLPQGWNDWHDYAKHTNVYYGEYKcygpgadrssrva
MSTTILIRVDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTYREKIVVPADKPFITISGTKASNTIITWSDGGEIFQSATFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAFYGCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNGAITAQKRVSSEENTGFTFLGCKITGVGKAVLGRPWGPYSRVVYALTYMSGLVLPQGWNDWHDYAKHTNVYYGEYKCYGPGADRSSRVA
***********************I*****NNSKLYFIWIKPGTYREKIVVPADKPFITISGTKASNTIITWSDGGEIFQSATFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAFYGCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNGAITAQKRV**EENTGFTFLGCKITGVGKAVLGRPWGPYSRVVYALTYMSGLVLPQGWNDWHDYAKHTNVYYGEYKCYG**********
*STTILIRVDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTYREKIVVPADKPFITISGTKASNTIITWSDGGEIFQSATFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAFYGCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNGAITAQKRVSSEENTGFTFLGCKITGVGKAVLGRPWGPYSRVVYALTYMSGLVLPQGWNDWHDYAKHTNVYYGEYKCYGPGA*******
MSTTILIRVDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTYREKIVVPADKPFITISGTKASNTIITWSDGGEIFQSATFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAFYGCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNGAITAQKRVSSEENTGFTFLGCKITGVGKAVLGRPWGPYSRVVYALTYMSGLVLPQGWNDWHDYAKHTNVYYGEYKCYGPG********
***TILIRVDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTYREKIVVPADKPFITISGTKASNTIITWSDGGEIFQSATFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAFYGCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNGAITAQKRVSSEENTGFTFLGCKITGVGKAVLGRPWGPYSRVVYALTYMSGLVLPQGWNDWHDYAKHTNVYYGEYKCYGPG********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTTILIRVDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTYREKIVVPADKPFITISGTKASNTIITWSDGGEIFQSATFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAFYGCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNGAITAQKRVSSEENTGFTFLGCKITGVGKAVLGRPWGPYSRVVYALTYMSGLVLPQGWNDWHDYAKHTNVYYGEYKCYGPGADRSSRVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query261 2.2.26 [Sep-21-2011]
Q9SIJ9352 Putative pectinesterase 1 yes no 0.988 0.732 0.692 1e-110
Q8VYZ3383 Probable pectinesterase 5 no no 0.961 0.655 0.494 5e-69
Q9ZQA3407 Probable pectinesterase 1 no no 0.988 0.633 0.443 8e-63
Q9LVQ0317 Pectinesterase 31 OS=Arab no no 0.988 0.813 0.438 1e-60
Q8LPF3362 Probable pectinesterase 6 no no 0.954 0.687 0.451 9e-60
Q9LY17361 Probable pectinesterase 5 no no 0.977 0.706 0.424 1e-57
O23038393 Probable pectinesterase 8 no no 0.984 0.653 0.425 4e-57
Q9FM79380 Pectinesterase QRT1 OS=Ar no no 0.934 0.642 0.432 5e-57
Q9LSP1344 Probable pectinesterase 6 no no 0.992 0.752 0.414 5e-57
Q9LY18361 Probable pectinesterase 4 no no 0.980 0.709 0.415 1e-55
>sp|Q9SIJ9|PME11_ARATH Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 Back     alignment and function desciption
 Score =  399 bits (1025), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 180/260 (69%), Positives = 217/260 (83%), Gaps = 2/260 (0%)

Query: 3   TTILIRVDQSGRGDFKKIQDAIDSVPSN--NSKLYFIWIKPGTYREKIVVPADKPFITIS 60
           T ILIRVDQSG+GDF KIQ+AI+S+P N  NS+LYFIW+KPG YREK+V+PA+KP+IT+S
Sbjct: 47  TAILIRVDQSGKGDFSKIQEAIESIPPNLNNSQLYFIWVKPGIYREKVVIPAEKPYITLS 106

Query: 61  GTKASNTIITWSDGGEIFQSATFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAFY 120
           GT+ASNT + WSDG +I +S T T+ ASDFV RFLTI+N +G+AG+AVALRV+A++AAFY
Sbjct: 107 GTQASNTFLIWSDGEDILESPTLTIFASDFVCRFLTIQNKFGTAGRAVALRVAADKAAFY 166

Query: 121 GCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNGAITAQKR 180
           GC I SYQDTLLDD GNHY+ +CYIEGATDFICG+A+SL+ERCH+HSLS  NG+ITAQ R
Sbjct: 167 GCVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPNNGSITAQMR 226

Query: 181 VSSEENTGFTFLGCKITGVGKAVLGRPWGPYSRVVYALTYMSGLVLPQGWNDWHDYAKHT 240
            S+ E +GFTFLGCK+TG G   LGRPWG YSRVV+A ++ S +V PQGWN W D  K  
Sbjct: 227 TSATEKSGFTFLGCKLTGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKEN 286

Query: 241 NVYYGEYKCYGPGADRSSRV 260
            VYYGEYKCYGPGADR  RV
Sbjct: 287 TVYYGEYKCYGPGADREQRV 306
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVQ0|PME31_ARATH Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1 Back     alignment and function description
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY17|PME50_ARATH Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1 Back     alignment and function description
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function description
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSP1|PME67_ARATH Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY18|PME49_ARATH Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
224077850315 predicted protein [Populus trichocarpa] 0.996 0.825 0.785 1e-121
147843788342 hypothetical protein VITISV_004378 [Viti 0.996 0.760 0.773 1e-120
359475108318 PREDICTED: putative pectinesterase 11 [V 0.996 0.817 0.765 1e-119
297744396 365 unnamed protein product [Vitis vinifera] 0.996 0.712 0.765 1e-119
255543703346 Pectinesterase-3 precursor, putative [Ri 0.996 0.751 0.730 1e-114
225458247 365 PREDICTED: putative pectinesterase 11 [V 0.996 0.712 0.715 1e-114
302142511 422 unnamed protein product [Vitis vinifera] 0.996 0.616 0.715 1e-114
15226598352 pectinesterase 11 [Arabidopsis thaliana] 0.988 0.732 0.692 1e-109
297825017352 pectinesterase family protein [Arabidops 0.988 0.732 0.676 1e-106
449462266314 PREDICTED: putative pectinesterase 11-li 0.996 0.828 0.696 1e-105
>gi|224077850|ref|XP_002305435.1| predicted protein [Populus trichocarpa] gi|222848399|gb|EEE85946.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/261 (78%), Positives = 232/261 (88%), Gaps = 1/261 (0%)

Query: 1   MSTTILIRVDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTY-REKIVVPADKPFITI 59
           MST ILIRV+QSG+GDFKKIQDAIDSVPSNNS+L FIW+KPGTY REKIVVPADKPFIT+
Sbjct: 21  MSTAILIRVEQSGKGDFKKIQDAIDSVPSNNSELVFIWVKPGTYSREKIVVPADKPFITL 80

Query: 60  SGTKASNTIITWSDGGEIFQSATFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAF 119
           SGT+ S+TIITW+DGG I +S T TV+ASDFVGR+LTI+NT+GSAGKAVALRVS +RAAF
Sbjct: 81  SGTQPSDTIITWNDGGNIMESPTLTVLASDFVGRYLTIQNTFGSAGKAVALRVSGDRAAF 140

Query: 120 YGCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNGAITAQK 179
           YGCRILSYQDTLLDDTG+HYYS+CYIEGATDFICGNAASLFERCH+HS+ST NG+ITAQ 
Sbjct: 141 YGCRILSYQDTLLDDTGSHYYSNCYIEGATDFICGNAASLFERCHLHSISTNNGSITAQH 200

Query: 180 RVSSEENTGFTFLGCKITGVGKAVLGRPWGPYSRVVYALTYMSGLVLPQGWNDWHDYAKH 239
           R  + ENTG  FLGCKITG G   LGRPWG YSRV+YA TYMSG++ P GW+DW D +KH
Sbjct: 201 RNLASENTGLVFLGCKITGAGTTFLGRPWGAYSRVLYAFTYMSGVIAPAGWDDWADPSKH 260

Query: 240 TNVYYGEYKCYGPGADRSSRV 260
           + V+Y EYKCYGPGADRS RV
Sbjct: 261 STVFYAEYKCYGPGADRSKRV 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147843788|emb|CAN79458.1| hypothetical protein VITISV_004378 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475108|ref|XP_002280496.2| PREDICTED: putative pectinesterase 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744396|emb|CBI37658.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255543703|ref|XP_002512914.1| Pectinesterase-3 precursor, putative [Ricinus communis] gi|223547925|gb|EEF49417.1| Pectinesterase-3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225458247|ref|XP_002281308.1| PREDICTED: putative pectinesterase 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142511|emb|CBI19714.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15226598|ref|NP_179755.1| pectinesterase 11 [Arabidopsis thaliana] gi|75206124|sp|Q9SIJ9.1|PME11_ARATH RecName: Full=Putative pectinesterase 11; Short=PE 11; AltName: Full=Pectin methylesterase 11; Short=AtPME11 gi|4567229|gb|AAD23644.1| putative pectinesterase [Arabidopsis thaliana] gi|330252108|gb|AEC07202.1| pectinesterase 11 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297825017|ref|XP_002880391.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297326230|gb|EFH56650.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449462266|ref|XP_004148862.1| PREDICTED: putative pectinesterase 11-like [Cucumis sativus] gi|449507359|ref|XP_004163009.1| PREDICTED: putative pectinesterase 11-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
TAIR|locus:2049344352 PE11 "pectinesterase 11" [Arab 0.992 0.735 0.693 3.7e-103
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.992 0.676 0.485 3.2e-65
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.988 0.633 0.443 1.3e-59
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.954 0.687 0.451 1.9e-58
TAIR|locus:2094652317 PME31 "pectin methylesterase 3 0.988 0.813 0.438 3.6e-57
TAIR|locus:2183364361 AT5G07430 [Arabidopsis thalian 0.977 0.706 0.424 2.9e-55
TAIR|locus:2086037344 AT3G17060 [Arabidopsis thalian 0.992 0.752 0.414 4.3e-54
TAIR|locus:2183349361 AT5G07420 [Arabidopsis thalian 0.980 0.709 0.415 3e-53
TAIR|locus:2040525333 AT2G36700 [Arabidopsis thalian 0.980 0.768 0.425 1e-52
TAIR|locus:2196805361 PPME1 [Arabidopsis thaliana (t 0.965 0.698 0.397 4.6e-50
TAIR|locus:2049344 PE11 "pectinesterase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 181/261 (69%), Positives = 218/261 (83%)

Query:     2 STTILIRVDQSGRGDFKKIQDAIDSVPSN--NSKLYFIWIKPGTYREKIVVPADKPFITI 59
             ST ILIRVDQSG+GDF KIQ+AI+S+P N  NS+LYFIW+KPG YREK+V+PA+KP+IT+
Sbjct:    46 STAILIRVDQSGKGDFSKIQEAIESIPPNLNNSQLYFIWVKPGIYREKVVIPAEKPYITL 105

Query:    60 SGTKASNTIITWSDGGEIFQSATFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAF 119
             SGT+ASNT + WSDG +I +S T T+ ASDFV RFLTI+N +G+AG+AVALRV+A++AAF
Sbjct:   106 SGTQASNTFLIWSDGEDILESPTLTIFASDFVCRFLTIQNKFGTAGRAVALRVAADKAAF 165

Query:   120 YGCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNGAITAQK 179
             YGC I SYQDTLLDD GNHY+ +CYIEGATDFICG+A+SL+ERCH+HSLS  NG+ITAQ 
Sbjct:   166 YGCVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPNNGSITAQM 225

Query:   180 RVSSEENTGFTFLGCKITGVGKAVLGRPWGPYSRVVYALTYMSGLVLPQGWNDWHDYAKH 239
             R S+ E +GFTFLGCK+TG G   LGRPWG YSRVV+A ++ S +V PQGWN W D  K 
Sbjct:   226 RTSATEKSGFTFLGCKLTGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKE 285

Query:   240 TNVYYGEYKCYGPGADRSSRV 260
               VYYGEYKCYGPGADR  RV
Sbjct:   286 NTVYYGEYKCYGPGADREQRV 306
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094652 PME31 "pectin methylesterase 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086037 AT3G17060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183349 AT5G07420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040525 AT2G36700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196805 PPME1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SIJ9PME11_ARATH3, ., 1, ., 1, ., 1, 10.69230.98850.7329yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.IV.576.1
pectinesterase family protein (EC-3.1.1.11) (315 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_VIII1759
SubName- Full=Putative uncharacterized protein; (327 aa)
  •  •  0.925
estExt_fgenesh4_pm.C_LG_VI0607
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.922
fgenesh4_pg.C_LG_XVI000684
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.921
gw1.X.2863.1
hypothetical protein (378 aa)
  •  •  0.919
eugene3.00081702
SubName- Full=Putative uncharacterized protein; (402 aa)
  •  •  0.919
gw1.II.376.1
hypothetical protein (392 aa)
  •  •  0.917
eugene3.00150667
SubName- Full=Putative uncharacterized protein; (404 aa)
  •  •  0.916
fgenesh4_pg.C_scaffold_170000043
hypothetical protein (396 aa)
  •  •  0.915
gw1.28.798.1
hypothetical protein (346 aa)
  •  •  0.915
gw1.XI.2918.1
hypothetical protein (368 aa)
  •  •  0.914

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
PLN02432293 PLN02432, PLN02432, putative pectinesterase 1e-179
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-105
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 7e-90
PLN02773317 PLN02773, PLN02773, pectinesterase 1e-87
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 5e-84
PLN02497331 PLN02497, PLN02497, probable pectinesterase 7e-83
PLN02671359 PLN02671, PLN02671, pectinesterase 1e-82
PLN02634359 PLN02634, PLN02634, probable pectinesterase 2e-82
PLN02304379 PLN02304, PLN02304, probable pectinesterase 4e-81
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 3e-76
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 3e-60
PLN02176340 PLN02176, PLN02176, putative pectinesterase 4e-60
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 3e-59
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 2e-57
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 9e-57
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 9e-56
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 3e-55
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 4e-53
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 6e-53
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 9e-53
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 2e-52
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 3e-52
PLN02314586 PLN02314, PLN02314, pectinesterase 2e-50
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 2e-50
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 3e-50
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 4e-50
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 4e-46
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-45
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 3e-44
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 8e-41
PLN02197588 PLN02197, PLN02197, pectinesterase 6e-38
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 1e-37
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 2e-36
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 6e-25
TIGR04247 377 TIGR04247, NosD_copper_fam, nitrous oxide reductas 0.003
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information 
 Score =  492 bits (1269), Expect = e-179
 Identities = 205/261 (78%), Positives = 237/261 (90%)

Query: 1   MSTTILIRVDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTYREKIVVPADKPFITIS 60
           +ST ILIRVDQSG+GDF+KIQDAID+VPSNNS+L FIW+KPG YREK+VVPADKPFIT+S
Sbjct: 7   LSTAILIRVDQSGKGDFRKIQDAIDAVPSNNSQLVFIWVKPGIYREKVVVPADKPFITLS 66

Query: 61  GTKASNTIITWSDGGEIFQSATFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAFY 120
           GT+ASNTIITW+DGG+IF+S T +V+ASDFVGRFLTI+NT+GS+GKAVALRV+ +RAAFY
Sbjct: 67  GTQASNTIITWNDGGDIFESPTLSVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFY 126

Query: 121 GCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNGAITAQKR 180
           GCRILSYQDTLLDDTG HYY +CYIEGATDFICGNAASLFE+CH+HSLS  NGAITAQ+R
Sbjct: 127 GCRILSYQDTLLDDTGRHYYRNCYIEGATDFICGNAASLFEKCHLHSLSPNNGAITAQQR 186

Query: 181 VSSEENTGFTFLGCKITGVGKAVLGRPWGPYSRVVYALTYMSGLVLPQGWNDWHDYAKHT 240
            S+ ENTGFTFLGCK+TG G   LGRPWGPYSRVV+AL+YMS +V PQGW+DW D +K +
Sbjct: 187 TSASENTGFTFLGCKLTGAGTTYLGRPWGPYSRVVFALSYMSSVVAPQGWDDWGDSSKQS 246

Query: 241 NVYYGEYKCYGPGADRSSRVA 261
            V+YGEYKCYGPGADRS RV 
Sbjct: 247 TVFYGEYKCYGPGADRSKRVE 267

Length = 293
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|234521 TIGR04247, NosD_copper_fam, nitrous oxide reductase family maturation protein NosD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 261
PLN02432293 putative pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.57
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.97
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.97
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.93
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.54
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.36
KOG1777 625 consensus Putative Zn-finger protein [General func 97.97
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.53
PLN02793443 Probable polygalacturonase 97.48
PLN03010409 polygalacturonase 97.43
PLN03003 456 Probable polygalacturonase At3g15720 97.27
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.25
PLN02218431 polygalacturonase ADPG 97.21
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.14
PLN02480343 Probable pectinesterase 97.12
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.06
PLN02671359 pectinesterase 96.98
PLN02773317 pectinesterase 96.92
PRK10531422 acyl-CoA thioesterase; Provisional 96.85
PLN02497331 probable pectinesterase 96.81
PLN02155394 polygalacturonase 96.78
smart00656190 Amb_all Amb_all domain. 96.73
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.64
PLN02665366 pectinesterase family protein 96.62
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 96.51
PLN02432293 putative pectinesterase 96.22
PLN02468565 putative pectinesterase/pectinesterase inhibitor 96.17
PLN02304379 probable pectinesterase 96.16
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.15
PLN02176340 putative pectinesterase 96.11
PLN02916502 pectinesterase family protein 96.09
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.02
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 96.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 95.99
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.98
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.98
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.9
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.87
PLN02634359 probable pectinesterase 95.85
PLN02314586 pectinesterase 95.83
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.83
PLN02301548 pectinesterase/pectinesterase inhibitor 95.8
PLN02682369 pectinesterase family protein 95.72
PLN02484587 probable pectinesterase/pectinesterase inhibitor 95.69
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.68
PLN02197588 pectinesterase 95.67
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.59
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.55
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.45
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 95.37
PLN02313587 Pectinesterase/pectinesterase inhibitor 95.24
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 95.01
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 94.89
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.42
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 94.24
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 94.06
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 91.84
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 90.71
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 90.32
PLN02188404 polygalacturonase/glycoside hydrolase family prote 90.26
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 88.9
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 88.32
PLN02218431 polygalacturonase ADPG 87.14
PLN02155394 polygalacturonase 85.2
PLN02793443 Probable polygalacturonase 82.57
smart00722146 CASH Domain present in carbohydrate binding protei 80.17
>PLN02432 putative pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-87  Score=605.73  Aligned_cols=260  Identities=79%  Similarity=1.375  Sum_probs=250.7

Q ss_pred             CCceEEEEcCCCCCCchhHHHHHHhCCCCCCceEEEEEcCeEEeeeeeeCCCCCcEEEeCCCCCCeEEEeCCCCCcccce
Q 046674            2 STTILIRVDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTYREKIVVPADKPFITISGTKASNTIITWSDGGEIFQSA   81 (261)
Q Consensus         2 ~~a~~i~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~k~~Itl~G~~~~~t~I~~~~~~~~~~~~   81 (261)
                      +.+.+++|+++|+|+|+|||+||+++|..+++|++|+|+||+|+|+|.||++||+|||+|++.++|+|+|++...++.++
T Consensus         8 ~~~~~~~Va~~Gsg~f~TIq~Aida~p~~~~~~~~I~I~~G~Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~sa   87 (293)
T PLN02432          8 STAILIRVDQSGKGDFRKIQDAIDAVPSNNSQLVFIWVKPGIYREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESP   87 (293)
T ss_pred             cceEEEEECCCCCCCccCHHHHHhhccccCCceEEEEEeCceeEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccce
Confidence            45688999999999999999999999999889999999999999999999999999999999999999999988888999


Q ss_pred             EEEEEcCceEEEeeEEEecCCCCCceEEEEecCCceEEEeeEEeeecceeeecCCceEEEecEEeccceeEecccceeEE
Q 046674           82 TFTVMASDFVGRFLTIENTYGSAGKAVALRVSANRAAFYGCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFE  161 (261)
Q Consensus        82 t~~v~a~~~~~~~lti~Ns~g~~~qa~Al~v~gd~~~~~~c~~~g~QDTl~~~~g~~~~~~c~I~G~vDfIfG~~~a~fe  161 (261)
                      ||.+.+++|+++||||+|++|..+||+||++.+||+.|++|+|+|+|||||.+.||+||++|+|+|+||||||.|.++||
T Consensus        88 T~~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~gr~yf~~c~I~G~VDFIFG~g~a~Fe  167 (293)
T PLN02432         88 TLSVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDDTGRHYYRNCYIEGATDFICGNAASLFE  167 (293)
T ss_pred             EEEEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEECCCCEEEEeCEEEecccEEecCceEEEE
Confidence            99999999999999999999988899999999999999999999999999999999999999999999999999999999


Q ss_pred             EeEEEEccCCCceEEEeccCCCCCceeEEEEccEEEecccEEEeeeccCcceEEEEccccCCcccCCCCCCCCCCCCCcc
Q 046674          162 RCHIHSLSTGNGAITAQKRVSSEENTGFTFLGCKITGVGKAVLGRPWGPYSRVVYALTYMSGLVLPQGWNDWHDYAKHTN  241 (261)
Q Consensus       162 ~c~i~~~~~~~g~Ita~~r~~~~~~~g~vf~~c~i~~~~~~~LGRpw~~~~~~v~~~~~~~~~i~~~Gw~~~~~~~~~~~  241 (261)
                      +|+|+++....|+|||++|+++..++||||.+|+|++++++||||||+++++|||++|+|+++|.|+||.+|+...+.++
T Consensus       168 ~c~i~s~~~~~g~itA~~r~~~~~~~Gfvf~~c~itg~g~~yLGRpW~~~srvvf~~t~l~~~I~p~GW~~w~~~~~~~~  247 (293)
T PLN02432        168 KCHLHSLSPNNGAITAQQRTSASENTGFTFLGCKLTGAGTTYLGRPWGPYSRVVFALSYMSSVVAPQGWDDWGDSSKQST  247 (293)
T ss_pred             eeEEEEecCCCCeEEecCCCCCCCCceEEEEeeEEcccchhhccCCCCCccEEEEEecccCCeEcCcccCccCCCCCCCc
Confidence            99999987667999999998888899999999999999999999999999999999999999999999999998877789


Q ss_pred             eEEEEEcccCCCcCCCCCCC
Q 046674          242 VYYGEYKCYGPGADRSSRVA  261 (261)
Q Consensus       242 ~~f~Ey~~~Gpga~~~~r~~  261 (261)
                      ++|+||+|+||||++++||+
T Consensus       248 ~~f~Ey~~~GpGa~~s~Rv~  267 (293)
T PLN02432        248 VFYGEYKCYGPGADRSKRVE  267 (293)
T ss_pred             eEEEEEcccCCCCCccCCcc
Confidence            99999999999999999985

>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 3e-44
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 6e-42
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 1e-14
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 1e-14
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 3e-14
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 1e-13
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  175 bits (443), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 101/271 (37%), Positives = 143/271 (52%), Gaps = 17/271 (6%)
Query: 7   IRVDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTYREKIVVPADKPFITISGTKASN 66
           + V   G GD+K + +A+ + P ++   Y I IK G YRE + VP  K  I   G   ++
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68
Query: 67  TIITWS----DGGEIFQSATFTVMASDFVGRFLTIENTYGSAG-KAVALRVSANRAAFYG 121
           TIIT S    DG   F SAT   + + F+ R +T +NT G+A  +AVALRV ++ +AFY 
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYR 128
Query: 122 CRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNGA---ITAQ 178
           C IL+YQD+L   +   ++ +C+I G  DFI GNAA + + C IH+   G+G    +TAQ
Sbjct: 129 CDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQ 188
Query: 179 KRVSSEENTGFTFLGCKITGVG---------KAVLGRPWGPYSRVVYALTYMSGLVLPQG 229
            R    +NTG      +I                LGRPW  YSR V   + ++ ++ P G
Sbjct: 189 GRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAG 248
Query: 230 WNDWHDYAKHTNVYYGEYKCYGPGADRSSRV 260
           W  W        +YYGEY+  G GA  S RV
Sbjct: 249 WFPWDGNFALDTLYYGEYQNTGAGAATSGRV 279
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-122
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-121
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-102
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-100
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 5e-90
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  349 bits (897), Expect = e-122
 Identities = 100/271 (36%), Positives = 140/271 (51%), Gaps = 17/271 (6%)

Query: 7   IRVDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTYREKIVVPADKPFITISGTKASN 66
           + V   G GD+K + +A+ + P ++   Y I IK G YRE + VP  K  I   G   ++
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 67  TIITWS----DGGEIFQSATFTVMASDFVGRFLTIENTYGSAGK-AVALRVSANRAAFYG 121
           TIIT S    DG   F SAT   + + F+ R +T +NT G+A   AVALRV ++ +AFY 
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYR 128

Query: 122 CRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTG---NGAITAQ 178
           C IL+YQD+L   +   ++ +C+I G  DFI GNAA + + C IH+   G      +TAQ
Sbjct: 129 CDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQ 188

Query: 179 KRVSSEENTGFTFLGCKITG---------VGKAVLGRPWGPYSRVVYALTYMSGLVLPQG 229
            R    +NTG      +I                LGRPW  YSR V   + ++ ++ P G
Sbjct: 189 GRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAG 248

Query: 230 WNDWHDYAKHTNVYYGEYKCYGPGADRSSRV 260
           W  W        +YYGEY+  G GA  S RV
Sbjct: 249 WFPWDGNFALDTLYYGEYQNTGAGAATSGRV 279
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.75
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.54
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.01
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.51
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.13
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.07
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.03
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.02
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.02
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.91
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.88
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.85
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.83
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.76
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.68
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.63
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.57
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.49
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.45
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.41
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.4
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.38
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.27
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.26
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.21
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.15
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.13
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.12
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.11
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.96
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.59
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.53
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.22
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.75
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.71
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 95.42
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 94.45
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 92.55
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 92.5
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 91.97
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 91.68
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 91.46
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 91.4
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 91.37
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 91.08
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 90.73
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 90.14
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 90.04
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 89.9
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 89.55
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 82.64
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1.2e-80  Score=567.71  Aligned_cols=257  Identities=37%  Similarity=0.660  Sum_probs=243.1

Q ss_pred             eEEEEcCCCCCCchhHHHHHHhCCCCCCceEEEEEcCeEEeeeeeeCCCCCcEEEeCCCCCCeEEEeCCC----CCcccc
Q 046674            5 ILIRVDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTYREKIVVPADKPFITISGTKASNTIITWSDG----GEIFQS   80 (261)
Q Consensus         5 ~~i~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~k~~Itl~G~~~~~t~I~~~~~----~~~~~~   80 (261)
                      ..++|+++|+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.||+|||+|+++++|+|+++..    .+++.+
T Consensus         3 ~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~s   82 (317)
T 1xg2_A            3 ANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRS   82 (317)
T ss_dssp             CSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGG
T ss_pred             ceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccce
Confidence            4689999999999999999999999999999999999999999999988999999999999999999863    346789


Q ss_pred             eEEEEEcCceEEEeeEEEecCCCC-CceEEEEecCCceEEEeeEEeeecceeeecCCceEEEecEEeccceeEeccccee
Q 046674           81 ATFTVMASDFVGRFLTIENTYGSA-GKAVALRVSANRAAFYGCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASL  159 (261)
Q Consensus        81 ~t~~v~a~~~~~~~lti~Ns~g~~-~qa~Al~v~gd~~~~~~c~~~g~QDTl~~~~g~~~~~~c~I~G~vDfIfG~~~a~  159 (261)
                      ++|.|.+++|+++||||+|++++. .||+||++.+|++.|++|+|+|+|||||.+.+|+||++|+|+|+||||||.+.++
T Consensus        83 atv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~av  162 (317)
T 1xg2_A           83 ATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVV  162 (317)
T ss_dssp             CSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEEE
T ss_pred             eEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceEE
Confidence            999999999999999999999864 4999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeEEEEccC---CCceEEEeccCCCCCceeEEEEccEEEecc---------cEEEeeeccCcceEEEEccccCCcccC
Q 046674          160 FERCHIHSLST---GNGAITAQKRVSSEENTGFTFLGCKITGVG---------KAVLGRPWGPYSRVVYALTYMSGLVLP  227 (261)
Q Consensus       160 fe~c~i~~~~~---~~g~Ita~~r~~~~~~~g~vf~~c~i~~~~---------~~~LGRpw~~~~~~v~~~~~~~~~i~~  227 (261)
                      ||+|+|+++..   ..++||||+|+++.+++||+|.||+|++++         ++||||||++++|+||++|+|+++|+|
T Consensus       163 f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~p  242 (317)
T 1xg2_A          163 FQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINP  242 (317)
T ss_dssp             EESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBCT
T ss_pred             EeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCcccc
Confidence            99999999753   468999999999999999999999999874         699999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcceEEEEEcccCCCcCCCCCCC
Q 046674          228 QGWNDWHDYAKHTNVYYGEYKCYGPGADRSSRVA  261 (261)
Q Consensus       228 ~Gw~~~~~~~~~~~~~f~Ey~~~Gpga~~~~r~~  261 (261)
                      +||.+|++..+.++++|+||+|+||||++++||+
T Consensus       243 ~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~  276 (317)
T 1xg2_A          243 AGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVK  276 (317)
T ss_dssp             TCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCC
T ss_pred             cccccCCCCCCcCceEEEEEcCCCCCCCcccccc
Confidence            9999999888889999999999999999999985
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 261
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-102
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 2e-73
d1ofla_ 481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 6e-04
d1ru4a_ 400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 7e-04
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  298 bits (764), Expect = e-102
 Identities = 101/269 (37%), Positives = 141/269 (52%), Gaps = 17/269 (6%)

Query: 9   VDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTYREKIVVPADKPFITISGTKASNTI 68
           V   G GD+K + +A+ + P ++   Y I IK G YRE + VP  K  I   G   ++TI
Sbjct: 11  VAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTI 70

Query: 69  ITWS----DGGEIFQSATFTVMASDFVGRFLTIENTYGSAGK-AVALRVSANRAAFYGCR 123
           IT S    DG   F SAT   + + F+ R +T +NT G+A   AVALRV ++ +AFY C 
Sbjct: 71  ITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCD 130

Query: 124 ILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAASLFERCHIHSLSTGNG---AITAQKR 180
           IL+YQD+L   +   ++ +C+I G  DFI GNAA + + C IH+   G+G    +TAQ R
Sbjct: 131 ILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGR 190

Query: 181 VSSEENTGFTFLGCKITGVG---------KAVLGRPWGPYSRVVYALTYMSGLVLPQGWN 231
               +NTG      +I                LGRPW  YSR V   + ++ ++ P GW 
Sbjct: 191 TDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWF 250

Query: 232 DWHDYAKHTNVYYGEYKCYGPGADRSSRV 260
            W        +YYGEY+  G GA  S RV
Sbjct: 251 PWDGNFALDTLYYGEYQNTGAGAATSGRV 279
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.32
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 99.1
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.52
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 98.06
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.77
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.56
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.27
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.22
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.2
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.13
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.03
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.83
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.83
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.63
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.71
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 95.64
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.38
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.33
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 92.34
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 91.36
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 90.68
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 90.55
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 89.57
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 89.46
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 87.7
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 87.06
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=5.4e-84  Score=586.51  Aligned_cols=258  Identities=38%  Similarity=0.687  Sum_probs=243.6

Q ss_pred             ceEEEEcCCCCCCchhHHHHHHhCCCCCCceEEEEEcCeEEeeeeeeCCCCCcEEEeCCCCCCeEEEeCCCC----Cccc
Q 046674            4 TILIRVDQSGRGDFKKIQDAIDSVPSNNSKLYFIWIKPGTYREKIVVPADKPFITISGTKASNTIITWSDGG----EIFQ   79 (261)
Q Consensus         4 a~~i~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~k~~Itl~G~~~~~t~I~~~~~~----~~~~   79 (261)
                      +..|+|++||+|||+|||+||+++|+++++|++|+|+||+|+|+|.||++||+|||+|++++.++|+++...    .+..
T Consensus         6 ~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~~   85 (319)
T d1gq8a_           6 GPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFN   85 (319)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGG
T ss_pred             CCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCcccc
Confidence            456999999999999999999999999999999999999999999999999999999999999999998643    3778


Q ss_pred             ceEEEEEcCceEEEeeEEEecCCCC-CceEEEEecCCceEEEeeEEeeecceeeecCCceEEEecEEeccceeEecccce
Q 046674           80 SATFTVMASDFVGRFLTIENTYGSA-GKAVALRVSANRAAFYGCRILSYQDTLLDDTGNHYYSSCYIEGATDFICGNAAS  158 (261)
Q Consensus        80 ~~t~~v~a~~~~~~~lti~Ns~g~~-~qa~Al~v~gd~~~~~~c~~~g~QDTl~~~~g~~~~~~c~I~G~vDfIfG~~~a  158 (261)
                      ++++.+.+++|+++||||+|++|.. +||+||++.+||+.|++|+|+|+|||||.+.||+||++|+|+|+||||||.+++
T Consensus        86 sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~~a  165 (319)
T d1gq8a_          86 SATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAV  165 (319)
T ss_dssp             GCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESCEE
T ss_pred             ccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCcee
Confidence            9999999999999999999999864 599999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeEEEEccCC---CceEEEeccCCCCCceeEEEEccEEEecc---------cEEEeeeccCcceEEEEccccCCccc
Q 046674          159 LFERCHIHSLSTG---NGAITAQKRVSSEENTGFTFLGCKITGVG---------KAVLGRPWGPYSRVVYALTYMSGLVL  226 (261)
Q Consensus       159 ~fe~c~i~~~~~~---~g~Ita~~r~~~~~~~g~vf~~c~i~~~~---------~~~LGRpw~~~~~~v~~~~~~~~~i~  226 (261)
                      +||+|+|+++...   .++||||+|+++..++||||.+|+|++++         ++||||||+++++|||++|+|+++|+
T Consensus       166 ~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~I~  245 (319)
T d1gq8a_         166 VLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVIN  245 (319)
T ss_dssp             EEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTTBC
T ss_pred             EeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccccc
Confidence            9999999997543   46899999999999999999999999874         57999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcceEEEEEcccCCCcCCCCCCC
Q 046674          227 PQGWNDWHDYAKHTNVYYGEYKCYGPGADRSSRVA  261 (261)
Q Consensus       227 ~~Gw~~~~~~~~~~~~~f~Ey~~~Gpga~~~~r~~  261 (261)
                      |+||.+|+...+.++++|+||+|+||||++++||+
T Consensus       246 p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~  280 (319)
T d1gq8a_         246 PAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVT  280 (319)
T ss_dssp             TTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCC
T ss_pred             cccccccCCCCccCceEEEEEeccCCCcCcCCccc
Confidence            99999999988899999999999999999999996
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure