Query 046675
Match_columns 186
No_of_seqs 162 out of 1999
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:20:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.9 6E-26 1.3E-30 174.0 13.0 98 70-170 30-137 (142)
2 PRK10743 heat shock protein Ib 99.9 9.2E-26 2E-30 172.2 12.1 94 72-168 34-137 (137)
3 COG0071 IbpA Molecular chapero 99.9 3.3E-24 7.1E-29 165.2 12.2 98 70-168 38-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 1.5E-22 3.3E-27 144.3 10.1 80 74-153 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 5.5E-22 1.2E-26 143.2 12.5 93 76-168 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 1.7E-21 3.6E-26 139.0 10.2 80 73-153 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.8 2.3E-20 4.9E-25 132.8 11.0 79 73-153 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.8 4.9E-20 1.1E-24 130.2 9.6 73 76-153 4-86 (86)
9 cd06479 ACD_HspB7_like Alpha c 99.8 2.3E-20 5E-25 130.4 7.7 78 76-153 2-81 (81)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 1.7E-19 3.7E-24 126.6 9.5 78 76-153 1-83 (83)
11 cd06498 ACD_alphaB-crystallin_ 99.8 3.4E-19 7.4E-24 125.3 9.4 78 77-154 2-84 (84)
12 cd06476 ACD_HspB2_like Alpha c 99.8 4.1E-19 9E-24 124.6 8.7 77 77-153 2-83 (83)
13 cd06475 ACD_HspB1_like Alpha c 99.8 5.1E-19 1.1E-23 124.9 8.5 78 75-152 3-85 (86)
14 cd06481 ACD_HspB9_like Alpha c 99.8 1.5E-18 3.2E-23 122.9 7.8 72 79-153 4-87 (87)
15 cd06464 ACD_sHsps-like Alpha-c 99.8 7.6E-18 1.7E-22 117.4 9.9 78 76-153 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.8 3.5E-18 7.7E-23 120.9 8.0 74 80-153 6-87 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.7 7.2E-18 1.6E-22 118.3 8.2 75 78-152 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.7 8.7E-18 1.9E-22 117.6 7.5 73 81-153 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.6 2E-15 4.4E-20 121.6 5.9 100 69-168 81-195 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.6 8.6E-15 1.9E-19 104.3 7.2 76 77-153 10-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.6 2.6E-14 5.5E-19 113.1 9.8 101 73-174 63-168 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.4 1.5E-12 3.3E-17 87.4 8.2 77 77-153 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.2 9.4E-11 2E-15 80.3 8.6 70 77-156 1-71 (78)
24 PF05455 GvpH: GvpH; InterPro 98.9 9E-09 2E-13 81.2 10.1 81 70-157 89-171 (177)
25 cd06463 p23_like Proteins cont 98.9 3.1E-08 6.7E-13 67.6 9.4 76 77-156 1-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.6 2.3E-07 4.9E-12 64.1 8.1 75 76-156 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.4 1.4E-05 3E-10 53.9 11.9 77 73-153 1-79 (79)
28 PF08190 PIH1: pre-RNA process 97.9 5.4E-05 1.2E-09 64.8 8.8 65 81-152 260-327 (328)
29 cd06465 p23_hB-ind1_like p23_l 97.9 0.00015 3.3E-09 52.7 9.5 77 73-155 1-78 (108)
30 cd06489 p23_CS_hSgt1_like p23_ 97.7 0.00029 6.3E-09 48.8 7.8 77 76-156 1-77 (84)
31 cd06467 p23_NUDC_like p23_like 97.6 0.00056 1.2E-08 47.1 8.4 72 75-156 1-77 (85)
32 cd06493 p23_NUDCD1_like p23_NU 97.4 0.0022 4.7E-08 44.6 9.4 75 75-156 1-77 (85)
33 cd06468 p23_CacyBP p23_like do 97.4 0.0025 5.4E-08 44.7 9.4 79 74-156 3-85 (92)
34 cd06488 p23_melusin_like p23_l 97.3 0.0029 6.4E-08 44.2 9.0 79 74-156 2-80 (87)
35 cd06494 p23_NUDCD2_like p23-li 97.0 0.0089 1.9E-07 42.6 9.1 75 71-156 4-83 (93)
36 cd00237 p23 p23 binds heat sho 96.5 0.046 9.9E-07 39.9 9.8 78 73-156 2-79 (106)
37 KOG1309 Suppressor of G2 allel 95.9 0.03 6.5E-07 44.6 6.5 81 72-156 3-83 (196)
38 PLN03088 SGT1, suppressor of 95.7 0.057 1.2E-06 47.2 8.1 81 72-156 156-236 (356)
39 cd06490 p23_NCB5OR p23_like do 95.3 0.42 9.1E-06 33.3 10.0 78 75-157 1-81 (87)
40 cd06492 p23_mNUDC_like p23-lik 95.1 0.29 6.3E-06 34.2 8.7 71 76-156 2-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 93.9 0.83 1.8E-05 33.0 9.0 77 72-155 4-86 (102)
42 cd06482 ACD_HspB10 Alpha cryst 83.1 3.1 6.6E-05 29.2 4.7 35 121-156 8-42 (87)
43 PRK10743 heat shock protein Ib 79.5 6.9 0.00015 29.7 5.9 33 122-155 46-78 (137)
44 cd06470 ACD_IbpA-B_like Alpha- 78.7 11 0.00024 26.0 6.4 36 121-157 11-46 (90)
45 cd06476 ACD_HspB2_like Alpha c 77.5 6.2 0.00013 27.2 4.7 34 120-154 6-39 (83)
46 cd06497 ACD_alphaA-crystallin_ 76.1 7 0.00015 27.0 4.7 33 121-154 10-42 (86)
47 cd06479 ACD_HspB7_like Alpha c 75.9 7.5 0.00016 26.8 4.7 32 122-154 9-40 (81)
48 cd06477 ACD_HspB3_Like Alpha c 75.9 7 0.00015 27.0 4.6 33 122-155 8-40 (83)
49 cd06478 ACD_HspB4-5-6 Alpha-cr 75.4 8.1 0.00018 26.5 4.8 33 121-154 7-39 (83)
50 cd06472 ACD_ScHsp26_like Alpha 74.9 14 0.00029 25.6 6.0 34 121-155 9-43 (92)
51 cd01759 PLAT_PL PLAT/LH2 domai 74.6 29 0.00063 25.5 7.9 85 83-173 2-91 (113)
52 cd06471 ACD_LpsHSP_like Group 74.3 7.9 0.00017 26.7 4.6 34 121-155 10-43 (93)
53 PRK11597 heat shock chaperone 74.0 11 0.00023 28.9 5.6 33 122-155 44-76 (142)
54 cd06526 metazoan_ACD Alpha-cry 73.4 8.4 0.00018 26.1 4.5 34 122-156 8-41 (83)
55 cd06498 ACD_alphaB-crystallin_ 70.7 8.9 0.00019 26.4 4.1 33 121-154 7-39 (84)
56 cd06481 ACD_HspB9_like Alpha c 69.5 18 0.0004 24.9 5.6 33 122-155 8-40 (87)
57 cd06475 ACD_HspB1_like Alpha c 67.6 15 0.00033 25.3 4.8 34 121-155 10-43 (86)
58 PF00011 HSP20: Hsp20/alpha cr 64.6 22 0.00048 24.7 5.3 33 121-154 7-39 (102)
59 cd06464 ACD_sHsps-like Alpha-c 63.4 20 0.00043 23.7 4.7 35 121-156 7-41 (88)
60 KOG2265 Nuclear distribution p 59.5 89 0.0019 24.9 8.6 76 71-156 17-97 (179)
61 COG0071 IbpA Molecular chapero 58.3 33 0.00072 25.8 5.6 33 122-155 51-83 (146)
62 PF01954 DUF104: Protein of un 53.9 13 0.00028 24.3 2.3 32 136-169 3-34 (60)
63 KOG1667 Zn2+-binding protein M 42.0 1.1E+02 0.0023 26.2 6.4 81 71-158 213-297 (320)
64 PF14913 DPCD: DPCD protein fa 41.1 1.9E+02 0.0042 23.4 8.6 81 70-155 84-170 (194)
65 KOG3413 Mitochondrial matrix p 40.4 14 0.0003 28.6 0.9 23 130-152 66-88 (156)
66 PF12992 DUF3876: Domain of un 39.1 1.4E+02 0.003 21.2 6.1 37 68-104 21-62 (95)
67 cd06467 p23_NUDC_like p23_like 39.0 99 0.0022 20.4 5.1 31 122-152 9-39 (85)
68 KOG3158 HSP90 co-chaperone p23 37.8 1.6E+02 0.0034 23.5 6.5 79 71-156 6-85 (180)
69 PF13349 DUF4097: Domain of un 37.6 1.7E+02 0.0037 21.7 8.7 74 72-150 65-147 (166)
70 smart00813 Alpha-L-AF_C Alpha- 34.8 1E+02 0.0022 24.1 5.2 28 127-154 160-188 (189)
71 PF06964 Alpha-L-AF_C: Alpha-L 33.2 1.3E+02 0.0029 23.1 5.6 29 126-154 148-176 (177)
72 PF01491 Frataxin_Cyay: Fratax 32.9 52 0.0011 23.8 3.0 18 137-154 31-48 (109)
73 COG5091 SGT1 Suppressor of G2 32.8 22 0.00047 30.6 1.0 82 72-157 176-258 (368)
74 cd00503 Frataxin Frataxin is a 32.6 45 0.00097 24.1 2.6 17 136-152 28-44 (105)
75 cd06494 p23_NUDCD2_like p23-li 31.9 94 0.002 21.8 4.1 30 122-151 16-45 (93)
76 cd07698 IgC_MHC_I_alpha3 Class 31.4 1.7E+02 0.0037 19.8 5.6 65 81-146 14-83 (93)
77 PF11033 ComJ: Competence prot 30.4 1.7E+02 0.0037 22.0 5.4 60 81-155 37-98 (125)
78 PRK00446 cyaY frataxin-like pr 29.8 49 0.0011 24.0 2.3 17 138-154 29-45 (105)
79 TIGR03421 FeS_CyaY iron donor 29.7 47 0.001 23.9 2.2 17 137-153 26-42 (102)
80 KOG3260 Calcyclin-binding prot 29.6 1.3E+02 0.0028 24.4 4.8 77 75-155 77-154 (224)
81 PF14730 DUF4468: Domain of un 28.5 2E+02 0.0043 19.7 6.1 18 137-154 69-86 (91)
82 cd01758 PLAT_LPL PLAT/ LH2 dom 28.4 2.6E+02 0.0057 21.1 6.5 65 83-147 2-75 (137)
83 PF07944 DUF1680: Putative gly 28.3 4.7E+02 0.01 24.0 9.6 61 75-135 388-454 (520)
84 TIGR03230 lipo_lipase lipoprot 26.1 4.1E+02 0.0089 24.2 8.1 83 83-171 310-405 (442)
85 PF01835 A2M_N: MG2 domain; I 25.8 2.2E+02 0.0047 19.3 5.5 44 93-136 33-77 (99)
86 PF08487 VIT: Vault protein in 24.0 2.4E+02 0.0052 20.2 5.2 34 121-154 35-68 (118)
87 PF06977 SdiA-regulated: SdiA- 23.6 4.3E+02 0.0093 21.9 7.3 61 88-150 15-81 (248)
88 cd00098 IgC Immunoglobulin Con 23.6 1.7E+02 0.0036 19.4 4.1 70 79-148 11-87 (95)
89 TIGR03422 mito_frataxin fratax 23.6 52 0.0011 23.5 1.5 16 139-154 30-45 (97)
90 PF08308 PEGA: PEGA domain; I 23.3 1.2E+02 0.0026 19.4 3.2 31 75-105 27-58 (71)
91 PF07076 DUF1344: Protein of u 21.8 91 0.002 20.5 2.2 31 90-139 9-39 (61)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.94 E-value=6e-26 Score=173.96 Aligned_cols=98 Identities=21% Similarity=0.363 Sum_probs=86.2
Q ss_pred CCccceeEEE-cCCeEEEEEecCCCCcCCeEEEEecCe---------ecccceEEEeeeeceEEEEEEECCCCcccCceE
Q 046675 70 LALARADLME-TPTAHVITLDIPGMKKDNMKIEVEENR---------EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAK 139 (186)
Q Consensus 70 ~~~p~~dv~e-~~~~~~l~~dlPG~~~edI~V~v~~~~---------~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~ 139 (186)
...|++||+| ++++|.|+++|||++++||+|+++++. +.++.+|+++|+.+|+|+|+|.||++||.+ +
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~ 107 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--G 107 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--c
Confidence 3568999998 577999999999999999999999997 234568999999999999999999999998 6
Q ss_pred EEEeCCEEEEEEecccccccCCCeEEEecCC
Q 046675 140 AHLENGVLRITVPKLAEEKKRQPKIINIDEE 170 (186)
Q Consensus 140 A~~~~GvL~I~~PK~~~~~~~~~k~I~I~~~ 170 (186)
|+|+||||+|++||..++ ..++|+|+|+.-
T Consensus 108 A~~~nGVL~I~lPK~~~~-~~~~rkI~I~~~ 137 (142)
T PRK11597 108 ATFVNGLLHIDLIRNEPE-AIAPQRIAISER 137 (142)
T ss_pred CEEcCCEEEEEEeccCcc-ccCCcEEEECCc
Confidence 999999999999997544 347899999864
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.93 E-value=9.2e-26 Score=172.20 Aligned_cols=94 Identities=19% Similarity=0.354 Sum_probs=83.1
Q ss_pred ccceeEEE-cCCeEEEEEecCCCCcCCeEEEEecCe---------ecccceEEEeeeeceEEEEEEECCCCcccCceEEE
Q 046675 72 LARADLME-TPTAHVITLDIPGMKKDNMKIEVEENR---------EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAH 141 (186)
Q Consensus 72 ~p~~dv~e-~~~~~~l~~dlPG~~~edI~V~v~~~~---------~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~ 141 (186)
.|++||++ ++++|.|+++||||+++||+|+++++. +.++++|+++|+.+|+|+|+|.||.+||.+ +|+
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~ 111 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GAN 111 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCE
Confidence 48899994 899999999999999999999999998 234467899999999999999999999999 499
Q ss_pred EeCCEEEEEEecccccccCCCeEEEec
Q 046675 142 LENGVLRITVPKLAEEKKRQPKIINID 168 (186)
Q Consensus 142 ~~~GvL~I~~PK~~~~~~~~~k~I~I~ 168 (186)
|+||||+|++||..++ ..++|+|+|+
T Consensus 112 ~~dGVL~I~lPK~~~~-~~~~r~I~I~ 137 (137)
T PRK10743 112 LVNGLLYIDLERVIPE-AKKPRRIEIN 137 (137)
T ss_pred EeCCEEEEEEeCCCcc-ccCCeEEeeC
Confidence 9999999999997543 3478999984
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.3e-24 Score=165.21 Aligned_cols=98 Identities=40% Similarity=0.648 Sum_probs=88.8
Q ss_pred CCccceeEEEcCCeEEEEEecCCCCcCCeEEEEecCe-----------ecccceEEEeeeeceEEEEEEECCCCcccCce
Q 046675 70 LALARADLMETPTAHVITLDIPGMKKDNMKIEVEENR-----------EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHA 138 (186)
Q Consensus 70 ~~~p~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~-----------~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i 138 (186)
...|++||++++++|.|.++||||+++||+|+++++. +.+...+.++++.+|.|+|+|.||..|+++.+
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 3679999999999999999999999999999999996 22467888999999999999999999999999
Q ss_pred EEEEeCCEEEEEEecccccccCCCeEEEec
Q 046675 139 KAHLENGVLRITVPKLAEEKKRQPKIINID 168 (186)
Q Consensus 139 ~A~~~~GvL~I~~PK~~~~~~~~~k~I~I~ 168 (186)
+|+|+||||+|++||.++++ .++++|+|+
T Consensus 118 ~A~~~nGvL~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred eeEeeCcEEEEEEecccccc-ccCceeecC
Confidence 99999999999999998763 567888874
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.88 E-value=1.5e-22 Score=144.29 Aligned_cols=80 Identities=54% Similarity=0.949 Sum_probs=73.3
Q ss_pred ceeEEEcCCeEEEEEecCCCCcCCeEEEEecC-e-----------ecccceEEEeeeeceEEEEEEECCCCcccCceEEE
Q 046675 74 RADLMETPTAHVITLDIPGMKKDNMKIEVEEN-R-----------EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAH 141 (186)
Q Consensus 74 ~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~-~-----------~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~ 141 (186)
++||+|++++|+|.++||||+++||+|+++++ . ...+..++++|+.+|+|.|+|.||.+||.++|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47999999999999999999999999999875 3 12346788999999999999999999999999999
Q ss_pred EeCCEEEEEEec
Q 046675 142 LENGVLRITVPK 153 (186)
Q Consensus 142 ~~~GvL~I~~PK 153 (186)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.88 E-value=5.5e-22 Score=143.24 Aligned_cols=93 Identities=43% Similarity=0.756 Sum_probs=77.6
Q ss_pred eEEEcCCeEEEEEecCCCCcCCeEEEEecCe---------ecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCCE
Q 046675 76 DLMETPTAHVITLDIPGMKKDNMKIEVEENR---------EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGV 146 (186)
Q Consensus 76 dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~---------~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~Gv 146 (186)
||.+++++|.|.++|||++++||+|++.++. ...+..+...++.++.|.|+|.||.+||.++|+|+|+||+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv 80 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV 80 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence 7999999999999999999999999999998 2345678888999999999999999999999999999999
Q ss_pred EEEEEecccccccCCCeEEEec
Q 046675 147 LRITVPKLAEEKKRQPKIINID 168 (186)
Q Consensus 147 L~I~~PK~~~~~~~~~k~I~I~ 168 (186)
|+|++||....+...+++|+|+
T Consensus 81 L~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 81 LTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEEccccccCCCCeEEEeC
Confidence 9999999988755678999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.86 E-value=1.7e-21 Score=138.99 Aligned_cols=80 Identities=39% Similarity=0.707 Sum_probs=72.8
Q ss_pred cceeEEEcCCeEEEEEecCCCCcCCeEEEEecCe-----e--------cccceEEEeeeeceEEEEEEECCCCcccCceE
Q 046675 73 ARADLMETPTAHVITLDIPGMKKDNMKIEVEENR-----E--------GVGEKWHRAERTFGKFWRQFRMPMSVDLEHAK 139 (186)
Q Consensus 73 p~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~-----~--------~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~ 139 (186)
+++||+|++++|+|.++|||++++||+|++.++. + ..+..+.++|+.+|+|.|+|.|| +|+.++|+
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~ 79 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIK 79 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCE
Confidence 3689999999999999999999999999999987 1 11236889999999999999999 89999999
Q ss_pred EEEeCCEEEEEEec
Q 046675 140 AHLENGVLRITVPK 153 (186)
Q Consensus 140 A~~~~GvL~I~~PK 153 (186)
|+|+||+|+|++||
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 99999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.84 E-value=2.3e-20 Score=132.77 Aligned_cols=79 Identities=29% Similarity=0.448 Sum_probs=71.5
Q ss_pred cceeEEEcC-CeEEEEEecCCCCcCCeEEEEecCe----------ecccceEEEeeeeceEEEEEEECCCCcccCceEEE
Q 046675 73 ARADLMETP-TAHVITLDIPGMKKDNMKIEVEENR----------EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAH 141 (186)
Q Consensus 73 p~~dv~e~~-~~~~l~~dlPG~~~edI~V~v~~~~----------~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~ 141 (186)
|++||++++ ++|+|.++|||++++||+|.++++. ...+.+|.++|+.+|+|.|+|.||.+||.+ +|+
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~ 78 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAE 78 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeE
Confidence 579999975 8999999999999999999999987 124567889999999999999999999985 899
Q ss_pred EeCCEEEEEEec
Q 046675 142 LENGVLRITVPK 153 (186)
Q Consensus 142 ~~~GvL~I~~PK 153 (186)
|+||+|+|++|+
T Consensus 79 ~~~GvL~I~l~~ 90 (90)
T cd06470 79 LENGLLTIDLER 90 (90)
T ss_pred EeCCEEEEEEEC
Confidence 999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.82 E-value=4.9e-20 Score=130.16 Aligned_cols=73 Identities=22% Similarity=0.453 Sum_probs=63.5
Q ss_pred eEEEcCCeEEEEEecCCCCcCCeEEEEecCe---ec------ccceEEEeeeeceEEEEEEECCCCcccCceEEEE-eCC
Q 046675 76 DLMETPTAHVITLDIPGMKKDNMKIEVEENR---EG------VGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHL-ENG 145 (186)
Q Consensus 76 dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~---~~------~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~-~~G 145 (186)
+|++++++|.|.++||||+++||+|++.++. .. ++..+. ..+|.|+|.||.+||.++|+|+| +||
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~-----~~ef~R~~~LP~~Vd~~~i~A~~~~dG 78 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYI-----SREFHRRYRLPSNVDQSAITCSLSADG 78 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEE-----EEEEEEEEECCCCCChHHeEEEeCCCC
Confidence 7999999999999999999999999999998 11 112222 23599999999999999999999 899
Q ss_pred EEEEEEec
Q 046675 146 VLRITVPK 153 (186)
Q Consensus 146 vL~I~~PK 153 (186)
+|+|++||
T Consensus 79 vL~I~~PK 86 (86)
T cd06497 79 MLTFSGPK 86 (86)
T ss_pred EEEEEecC
Confidence 99999998
No 9
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.82 E-value=2.3e-20 Score=130.41 Aligned_cols=78 Identities=18% Similarity=0.329 Sum_probs=66.1
Q ss_pred eEEEcCCeEEEEEecCCCCcCCeEEEEecCe-ecccceEEEeeeeceEEEEEEECCCCcccCceEEEE-eCCEEEEEEec
Q 046675 76 DLMETPTAHVITLDIPGMKKDNMKIEVEENR-EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHL-ENGVLRITVPK 153 (186)
Q Consensus 76 dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~-~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~-~~GvL~I~~PK 153 (186)
||.|++++|.|.++||||+|+||+|++.++. ...+++-...+..+|+|+|+|.||.+||+++|+|+| +||+|+|++++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 6899999999999999999999999999998 111111111234689999999999999999999998 99999999986
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.81 E-value=1.7e-19 Score=126.56 Aligned_cols=78 Identities=22% Similarity=0.388 Sum_probs=62.6
Q ss_pred eEEEcCCeEEEEEecCCCCcCCeEEEEecCe---ecccc-eEEEeeeeceEEEEEEECCCCcccCceEEEE-eCCEEEEE
Q 046675 76 DLMETPTAHVITLDIPGMKKDNMKIEVEENR---EGVGE-KWHRAERTFGKFWRQFRMPMSVDLEHAKAHL-ENGVLRIT 150 (186)
Q Consensus 76 dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~---~~~~~-~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~-~~GvL~I~ 150 (186)
+|.+++++|.|.++||||+++||+|++.++. ..+.. ..........+|.|+|.||.+||.++|+|+| +||+|+|+
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTIS 80 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEE
Confidence 4788999999999999999999999999998 11100 0000112234699999999999999999999 79999999
Q ss_pred Eec
Q 046675 151 VPK 153 (186)
Q Consensus 151 ~PK 153 (186)
+||
T Consensus 81 ~PK 83 (83)
T cd06478 81 GPR 83 (83)
T ss_pred ecC
Confidence 998
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.80 E-value=3.4e-19 Score=125.32 Aligned_cols=78 Identities=22% Similarity=0.362 Sum_probs=62.7
Q ss_pred EEEcCCeEEEEEecCCCCcCCeEEEEecCe---eccc-ceEEEeeeeceEEEEEEECCCCcccCceEEEEe-CCEEEEEE
Q 046675 77 LMETPTAHVITLDIPGMKKDNMKIEVEENR---EGVG-EKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLE-NGVLRITV 151 (186)
Q Consensus 77 v~e~~~~~~l~~dlPG~~~edI~V~v~~~~---~~~~-~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~-~GvL~I~~ 151 (186)
+.+++++|.|.++||||+++||+|++.++. ..+. ..........++|.|+|.||.+||.++|+|+|+ ||+|+|++
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~l 81 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCG 81 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEE
Confidence 578899999999999999999999999998 1100 000011123457999999999999999999995 99999999
Q ss_pred ecc
Q 046675 152 PKL 154 (186)
Q Consensus 152 PK~ 154 (186)
||.
T Consensus 82 Pk~ 84 (84)
T cd06498 82 PRK 84 (84)
T ss_pred eCC
Confidence 984
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.79 E-value=4.1e-19 Score=124.63 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=63.7
Q ss_pred EEEcCCeEEEEEecCCCCcCCeEEEEecCe---ec-ccceEEEeeeeceEEEEEEECCCCcccCceEEEEe-CCEEEEEE
Q 046675 77 LMETPTAHVITLDIPGMKKDNMKIEVEENR---EG-VGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLE-NGVLRITV 151 (186)
Q Consensus 77 v~e~~~~~~l~~dlPG~~~edI~V~v~~~~---~~-~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~-~GvL~I~~ 151 (186)
+..++++|.|.++||||+++||+|++.++. .. ........++..++|.|+|.||.+||.++|+|+|+ ||+|+|++
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQA 81 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEe
Confidence 345688999999999999999999999998 11 11122233456678999999999999999999995 99999999
Q ss_pred ec
Q 046675 152 PK 153 (186)
Q Consensus 152 PK 153 (186)
||
T Consensus 82 Pr 83 (83)
T cd06476 82 PR 83 (83)
T ss_pred cC
Confidence 97
No 13
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.79 E-value=5.1e-19 Score=124.95 Aligned_cols=78 Identities=19% Similarity=0.381 Sum_probs=64.1
Q ss_pred eeEEEcCCeEEEEEecCCCCcCCeEEEEecCe---ecccc-eEEEeeeeceEEEEEEECCCCcccCceEEEEe-CCEEEE
Q 046675 75 ADLMETPTAHVITLDIPGMKKDNMKIEVEENR---EGVGE-KWHRAERTFGKFWRQFRMPMSVDLEHAKAHLE-NGVLRI 149 (186)
Q Consensus 75 ~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~---~~~~~-~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~-~GvL~I 149 (186)
.||+|++++|.|.++||||+++||+|++.++. ..+.. .-.......++|+|+|.||.+||.++|+|+|+ ||+|+|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 58999999999999999999999999999987 11000 00011223468999999999999999999996 999999
Q ss_pred EEe
Q 046675 150 TVP 152 (186)
Q Consensus 150 ~~P 152 (186)
++|
T Consensus 83 ~lP 85 (86)
T cd06475 83 EAP 85 (86)
T ss_pred Eec
Confidence 998
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.77 E-value=1.5e-18 Score=122.85 Aligned_cols=72 Identities=21% Similarity=0.471 Sum_probs=61.6
Q ss_pred EcCCeEEEEEecCCCCcCCeEEEEecCe-----e----c--ccceEEEeeeeceEEEEEEECCCCcccCceEEEE-eCCE
Q 046675 79 ETPTAHVITLDIPGMKKDNMKIEVEENR-----E----G--VGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHL-ENGV 146 (186)
Q Consensus 79 e~~~~~~l~~dlPG~~~edI~V~v~~~~-----~----~--~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~-~~Gv 146 (186)
+..++|.|.++||||+++||+|++.++. + . ....| .+.+|+|.|+|.||.+||.++|+|+| +|||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~---~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGv 80 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSF---SYEYQEFVREAQLPEHVDPEAVTCSLSPSGH 80 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcE---EEEeeEEEEEEECCCCcChHHeEEEeCCCce
Confidence 4567999999999999999999999987 1 0 11222 34689999999999999999999999 9999
Q ss_pred EEEEEec
Q 046675 147 LRITVPK 153 (186)
Q Consensus 147 L~I~~PK 153 (186)
|+|++|+
T Consensus 81 L~I~~P~ 87 (87)
T cd06481 81 LHIRAPR 87 (87)
T ss_pred EEEEcCC
Confidence 9999996
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.75 E-value=7.6e-18 Score=117.35 Aligned_cols=78 Identities=49% Similarity=0.805 Sum_probs=69.4
Q ss_pred eEEEcCCeEEEEEecCCCCcCCeEEEEecCe---e-------cccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCC
Q 046675 76 DLMETPTAHVITLDIPGMKKDNMKIEVEENR---E-------GVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENG 145 (186)
Q Consensus 76 dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~---~-------~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~G 145 (186)
++.+++++|.|.++|||+++++|+|++.++. . .....+...++.++.|.|+|.||.++|.+.++|.|+||
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 5789999999999999999999999999987 1 11113567888999999999999999999999999999
Q ss_pred EEEEEEec
Q 046675 146 VLRITVPK 153 (186)
Q Consensus 146 vL~I~~PK 153 (186)
+|+|++||
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.75 E-value=3.5e-18 Score=120.85 Aligned_cols=74 Identities=19% Similarity=0.382 Sum_probs=62.1
Q ss_pred cCCeEEEEEecCCCCcCCeEEEEecCe-----e--cccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCC-EEEEEE
Q 046675 80 TPTAHVITLDIPGMKKDNMKIEVEENR-----E--GVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENG-VLRITV 151 (186)
Q Consensus 80 ~~~~~~l~~dlPG~~~edI~V~v~~~~-----~--~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~G-vL~I~~ 151 (186)
++++|+|.++||||+++||+|++.++. + ...+.....++.+|+|.|+|.||.+||.++|+|+|+|| +|+|..
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~~ 85 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIET 85 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEee
Confidence 567999999999999999999999997 1 11111123578999999999999999999999999666 999998
Q ss_pred ec
Q 046675 152 PK 153 (186)
Q Consensus 152 PK 153 (186)
|.
T Consensus 86 ~~ 87 (87)
T cd06482 86 PC 87 (87)
T ss_pred CC
Confidence 73
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.74 E-value=7.2e-18 Score=118.29 Aligned_cols=75 Identities=23% Similarity=0.331 Sum_probs=60.4
Q ss_pred EEcCCeEEEEEecCCCCcCCeEEEEecCe---eccc-ceEEEeeeeceEEEEEEECCCCcccCceEEEE-eCCEEEEEEe
Q 046675 78 METPTAHVITLDIPGMKKDNMKIEVEENR---EGVG-EKWHRAERTFGKFWRQFRMPMSVDLEHAKAHL-ENGVLRITVP 152 (186)
Q Consensus 78 ~e~~~~~~l~~dlPG~~~edI~V~v~~~~---~~~~-~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~-~~GvL~I~~P 152 (186)
-+++++|.|+++||||+++||+|++.++. ..+. ......+...++|+|+|.||.+|+.++|+|+| +||||+|+.|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 36788999999999999999999999998 1110 00011223445999999999999999999998 8999999976
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.73 E-value=8.7e-18 Score=117.59 Aligned_cols=73 Identities=29% Similarity=0.510 Sum_probs=60.6
Q ss_pred CCeEEEEEecCCCCcCCeEEEEecCe-ecccceEE---EeeeeceEEEEEEECCCCcccCceEEEEeC-CEEEEEEec
Q 046675 81 PTAHVITLDIPGMKKDNMKIEVEENR-EGVGEKWH---RAERTFGKFWRQFRMPMSVDLEHAKAHLEN-GVLRITVPK 153 (186)
Q Consensus 81 ~~~~~l~~dlPG~~~edI~V~v~~~~-~~~~~~~~---~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~-GvL~I~~PK 153 (186)
+++|.|.++||||+++||+|++.++. ...+.+-. ..++.+++|.|+|.||.+||.++++|+|+| |+|+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 36999999999999999999999987 11111000 234567899999999999999999999988 999999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2e-15 Score=121.64 Aligned_cols=100 Identities=45% Similarity=0.802 Sum_probs=85.4
Q ss_pred cCCccceeEEEcCCeEEEEEecCCCCcCCeEEEEecCe--------------ecccceEEEeeeeceEEEEEEECCCCcc
Q 046675 69 TLALARADLMETPTAHVITLDIPGMKKDNMKIEVEENR--------------EGVGEKWHRAERTFGKFWRQFRMPMSVD 134 (186)
Q Consensus 69 ~~~~p~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~--------------~~~~~~~~~~er~~g~f~R~~~LP~~Vd 134 (186)
....+.+++.+.++.|.+.+++||+.+++|+|.++++. ......|+..|+..|.|.|++.||++|+
T Consensus 81 ~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~ 160 (196)
T KOG0710|consen 81 SEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVD 160 (196)
T ss_pred ccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCcccc
Confidence 34556788999999999999999999999999999993 1144568899999999999999999999
Q ss_pred cCceEEEEeCCEEEEEEeccccc-ccCCCeEEEec
Q 046675 135 LEHAKAHLENGVLRITVPKLAEE-KKRQPKIINID 168 (186)
Q Consensus 135 ~~~i~A~~~~GvL~I~~PK~~~~-~~~~~k~I~I~ 168 (186)
.+.|+|.|+||||+|++||.... +....+.|.|.
T Consensus 161 ~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 161 VDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred HHHHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence 99999999999999999999873 23456666654
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.57 E-value=8.6e-15 Score=104.31 Aligned_cols=76 Identities=16% Similarity=0.320 Sum_probs=62.1
Q ss_pred EEEcCCeEEEEEecCCCCcCCeEEEEecCe---ec--ccceEEEeeeeceEEEEEEECCCCcccCceEEEEe-CCEEEEE
Q 046675 77 LMETPTAHVITLDIPGMKKDNMKIEVEENR---EG--VGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLE-NGVLRIT 150 (186)
Q Consensus 77 v~e~~~~~~l~~dlPG~~~edI~V~v~~~~---~~--~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~-~GvL~I~ 150 (186)
+..+++.|.|.+|+.||+++||+|++.++. .. +... .......++|.|+|.||.+||.+.|+|+|. ||+|+|.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~-~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQ-KEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE 88 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECccc-CCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence 446788999999999999999999999998 11 1111 112345689999999999999999999995 9999999
Q ss_pred Eec
Q 046675 151 VPK 153 (186)
Q Consensus 151 ~PK 153 (186)
+|.
T Consensus 89 aP~ 91 (91)
T cd06480 89 APQ 91 (91)
T ss_pred cCC
Confidence 983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.6e-14 Score=113.06 Aligned_cols=101 Identities=22% Similarity=0.410 Sum_probs=82.4
Q ss_pred cceeEEEcCCeEEEEEecCCCCcCCeEEEEecCe---ecccce-EEEeeeeceEEEEEEECCCCcccCceEEEE-eCCEE
Q 046675 73 ARADLMETPTAHVITLDIPGMKKDNMKIEVEENR---EGVGEK-WHRAERTFGKFWRQFRMPMSVDLEHAKAHL-ENGVL 147 (186)
Q Consensus 73 p~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~---~~~~~~-~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~-~~GvL 147 (186)
...++..+++.|.|.+|+..|++++|+|++.++. +.+.+. -.......++|.|++.||.+||+++|++++ .||+|
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvL 142 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVL 142 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceE
Confidence 4578899999999999999999999999999997 211111 122234556899999999999999999999 99999
Q ss_pred EEEEecccccccCCCeEEEecCCCCCC
Q 046675 148 RITVPKLAEEKKRQPKIINIDEESGNS 174 (186)
Q Consensus 148 ~I~~PK~~~~~~~~~k~I~I~~~~~~~ 174 (186)
+|.+||.+.... ..|.|+|+..+..+
T Consensus 143 tI~ap~~~~~~~-~er~ipI~~~~~~~ 168 (173)
T KOG3591|consen 143 TIEAPKPPPKQD-NERSIPIEQVGPSA 168 (173)
T ss_pred EEEccCCCCcCc-cceEEeEeecCccc
Confidence 999999986633 68999999877544
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.40 E-value=1.5e-12 Score=87.36 Aligned_cols=77 Identities=48% Similarity=0.791 Sum_probs=63.8
Q ss_pred EEEcCCeEEEEEecCCCCcCCeEEEEecCe---ecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCCEEEEEEec
Q 046675 77 LMETPTAHVITLDIPGMKKDNMKIEVEENR---EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGVLRITVPK 153 (186)
Q Consensus 77 v~e~~~~~~l~~dlPG~~~edI~V~v~~~~---~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK 153 (186)
|.++++.|.|++++||+.+++|.|.+.++. ..........+...+.|.+.+.||..|++++++|++.+|+|+|++||
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K 80 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence 568889999999999999999999999976 11111000134567899999999999999999999999999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.21 E-value=9.4e-11 Score=80.33 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=61.3
Q ss_pred EEEcCCeEEEEEecCCCCcCCeEEEEecCe-ecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCCEEEEEEeccc
Q 046675 77 LMETPTAHVITLDIPGMKKDNMKIEVEENR-EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLA 155 (186)
Q Consensus 77 v~e~~~~~~l~~dlPG~~~edI~V~v~~~~-~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~ 155 (186)
|+++++.+.|.+++||+++++++|+++++. .... ..|.+.+.||..||+++.+|++.+|.|.|+++|..
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~----------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~ 70 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF----------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKE 70 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC----------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCC
Confidence 568899999999999999999999998865 2111 35899999999999999999999999999999986
Q ss_pred c
Q 046675 156 E 156 (186)
Q Consensus 156 ~ 156 (186)
+
T Consensus 71 ~ 71 (78)
T cd06469 71 P 71 (78)
T ss_pred C
Confidence 4
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.94 E-value=9e-09 Score=81.17 Aligned_cols=81 Identities=22% Similarity=0.425 Sum_probs=63.4
Q ss_pred CCccceeEEEcCC-eEEEEEecCCCCcCC-eEEEEecCeecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCCEE
Q 046675 70 LALARADLMETPT-AHVITLDIPGMKKDN-MKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGVL 147 (186)
Q Consensus 70 ~~~p~~dv~e~~~-~~~l~~dlPG~~~ed-I~V~v~~~~~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL 147 (186)
...+.+++.+.++ .+.|.++|||+++++ |+|.++.+. .... -+..+.+.+++.||.. +.+.++|+|+||||
T Consensus 89 ~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~----~~L~--i~~~~~~~krv~L~~~-~~e~~~~t~nNgIL 161 (177)
T PF05455_consen 89 EESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDE----GALT--IRVGEKYLKRVALPWP-DPEITSATFNNGIL 161 (177)
T ss_pred cceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCC----ceEE--EecCCceEeeEecCCC-ccceeeEEEeCceE
Confidence 3457789998887 699999999999988 999999754 0000 1223347789999966 78999999999999
Q ss_pred EEEEeccccc
Q 046675 148 RITVPKLAEE 157 (186)
Q Consensus 148 ~I~~PK~~~~ 157 (186)
+|++-+....
T Consensus 162 EIri~~~~~~ 171 (177)
T PF05455_consen 162 EIRIRRTEES 171 (177)
T ss_pred EEEEeecCCC
Confidence 9999887643
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.85 E-value=3.1e-08 Score=67.60 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=62.1
Q ss_pred EEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCCEEEEEEecccc
Q 046675 77 LMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLAE 156 (186)
Q Consensus 77 v~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~~ 156 (186)
|.++++.+.|.+.+||..++++.|.+.++.- .........+.|...+.|+..|++++.++++++|.|.|+++|..+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l----~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSL----TVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEE----EEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 4678899999999999999999999998650 000000123578899999999999999999999999999999865
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.63 E-value=2.3e-07 Score=64.10 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=63.1
Q ss_pred eEEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEEeee--eceEEEEEEECCCCcccCceEEEEeCCEEEEEEec
Q 046675 76 DLMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAER--TFGKFWRQFRMPMSVDLEHAKAHLENGVLRITVPK 153 (186)
Q Consensus 76 dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~er--~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK 153 (186)
||+++++.+.|.+.+||+.++++.|.++++. ....-. ..+.|...+.|...|+++..++++.+|.|.|++.|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~------l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K 74 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQS------LSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKK 74 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCE------EEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEc
Confidence 6889999999999999999999999998855 111111 23468889999999999999999999999999999
Q ss_pred ccc
Q 046675 154 LAE 156 (186)
Q Consensus 154 ~~~ 156 (186)
...
T Consensus 75 ~~~ 77 (84)
T cd06466 75 AEP 77 (84)
T ss_pred CCC
Confidence 864
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.39 E-value=1.4e-05 Score=53.87 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=59.5
Q ss_pred cceeEEEcCCeEEEEEecCCC--CcCCeEEEEecCeecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCCEEEEE
Q 046675 73 ARADLMETPTAHVITLDIPGM--KKDNMKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGVLRIT 150 (186)
Q Consensus 73 p~~dv~e~~~~~~l~~dlPG~--~~edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~ 150 (186)
|.++|+++++.+.|.+.+++. +++||.|.++++.- ...........|...+.|...|+++..+.++.++.|.|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l----~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~ 76 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSL----SVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEIT 76 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEE----EEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEE----EEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEE
Confidence 578999999999999999665 59999999999660 000000111368888999999999999999999999999
Q ss_pred Eec
Q 046675 151 VPK 153 (186)
Q Consensus 151 ~PK 153 (186)
|.|
T Consensus 77 L~K 79 (79)
T PF04969_consen 77 LKK 79 (79)
T ss_dssp EEB
T ss_pred EEC
Confidence 987
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.93 E-value=5.4e-05 Score=64.85 Aligned_cols=65 Identities=25% Similarity=0.551 Sum_probs=53.1
Q ss_pred CCeEEEEEecCCC-CcCCeEEEEecCeecccceEEEeeeeceEEEEEEECCCCcccCceEEEE--eCCEEEEEEe
Q 046675 81 PTAHVITLDIPGM-KKDNMKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHL--ENGVLRITVP 152 (186)
Q Consensus 81 ~~~~~l~~dlPG~-~~edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~--~~GvL~I~~P 152 (186)
.+.++|+++|||+ +..+|.|.|.... .........|...+.||..||.+..+|.| +.++|+|++|
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~-------l~l~~~~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDR-------LSLSSPKPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCE-------EEEEeCCCceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 5789999999999 7799999999855 11111112577889999999999999999 6689999998
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.89 E-value=0.00015 Score=52.69 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=61.6
Q ss_pred cceeEEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEEeee-eceEEEEEEECCCCcccCceEEEEeCCEEEEEE
Q 046675 73 ARADLMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAER-TFGKFWRQFRMPMSVDLEHAKAHLENGVLRITV 151 (186)
Q Consensus 73 p~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~er-~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~ 151 (186)
|+++|+++.+.+.|.+.+||+ +++.|.+..+.- ....... ....|...+.|...|+++..+.++.++.|.|+|
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l----~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L 74 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSL----SFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVL 74 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEE----EEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEE
Confidence 578999999999999999998 888999888650 0001011 123477888999999999999999999999999
Q ss_pred eccc
Q 046675 152 PKLA 155 (186)
Q Consensus 152 PK~~ 155 (186)
.|..
T Consensus 75 ~K~~ 78 (108)
T cd06465 75 RKKE 78 (108)
T ss_pred EECC
Confidence 9987
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.69 E-value=0.00029 Score=48.81 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=60.7
Q ss_pred eEEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCCEEEEEEeccc
Q 046675 76 DLMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLA 155 (186)
Q Consensus 76 dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~ 155 (186)
||+++++.+.|.+.++|+.+++++|++.++.-. ..........|.-.+.|...|++++.+.+...+-+.|++.|..
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~----~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~ 76 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELS----ATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTE 76 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEE----EEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCC
Confidence 688999999999999999999999999886600 0000011124777889999999998888888999999999975
Q ss_pred c
Q 046675 156 E 156 (186)
Q Consensus 156 ~ 156 (186)
.
T Consensus 77 ~ 77 (84)
T cd06489 77 A 77 (84)
T ss_pred C
Confidence 3
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.62 E-value=0.00056 Score=47.13 Aligned_cols=72 Identities=24% Similarity=0.338 Sum_probs=57.8
Q ss_pred eeEEEcCCeEEEEEecC-CCCcCCeEEEEecCe---ecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeC-CEEEE
Q 046675 75 ADLMETPTAHVITLDIP-GMKKDNMKIEVEENR---EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLEN-GVLRI 149 (186)
Q Consensus 75 ~dv~e~~~~~~l~~dlP-G~~~edI~V~v~~~~---~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~-GvL~I 149 (186)
+.|.++++.+.|.+.+| |+.++||+|++.++. ...+ +...-.-.|...|+++..+-++.+ ..|.|
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~----------~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i 70 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG----------GEPLLDGELYAKVKVDESTWTLEDGKLLEI 70 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC----------CCceEcCcccCceeEcCCEEEEeCCCEEEE
Confidence 46899999999999997 789999999999866 1111 123334468999999998888888 99999
Q ss_pred EEecccc
Q 046675 150 TVPKLAE 156 (186)
Q Consensus 150 ~~PK~~~ 156 (186)
+++|.++
T Consensus 71 ~L~K~~~ 77 (85)
T cd06467 71 TLEKRNE 77 (85)
T ss_pred EEEECCC
Confidence 9999864
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.43 E-value=0.0022 Score=44.62 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=56.1
Q ss_pred eeEEEcCCeEEEEEecC-CCCcCCeEEEEecCeecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCC-EEEEEEe
Q 046675 75 ADLMETPTAHVITLDIP-GMKKDNMKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENG-VLRITVP 152 (186)
Q Consensus 75 ~dv~e~~~~~~l~~dlP-G~~~edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~G-vL~I~~P 152 (186)
++|+++.+.+.|.+.+| |+.++|++|++..+.- ... ...+.....-.|...|+++.-+=++++| .|.|++.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l------~v~-~~~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~ 73 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHI------SIA-LKDQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLI 73 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEE------EEE-eCCCCeEEeCcccCcccccCcEEEEeCCCEEEEEEE
Confidence 47899999999999996 9999999999998661 000 0111112344789999999876667777 7999999
Q ss_pred cccc
Q 046675 153 KLAE 156 (186)
Q Consensus 153 K~~~ 156 (186)
|..+
T Consensus 74 K~~~ 77 (85)
T cd06493 74 KKDE 77 (85)
T ss_pred ECCC
Confidence 9864
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.39 E-value=0.0025 Score=44.67 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=60.2
Q ss_pred ceeEEEcCCeEEEEEecCCCCc---CCeEEEEecCeecccceEEEeeeeceEEEEEEE-CCCCcccCceEEEEeCCEEEE
Q 046675 74 RADLMETPTAHVITLDIPGMKK---DNMKIEVEENREGVGEKWHRAERTFGKFWRQFR-MPMSVDLEHAKAHLENGVLRI 149 (186)
Q Consensus 74 ~~dv~e~~~~~~l~~dlPG~~~---edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~~-LP~~Vd~~~i~A~~~~GvL~I 149 (186)
.++|+++++.+.|.+.+|+..+ ++++|+++.+.-. ..........|.-.+. |-..|+++..+..+..+-+.|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~----v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i 78 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFE----LKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVI 78 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEE----EEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEE
Confidence 4789999999999999999887 9999999886500 0000001113555664 889999999999999999999
Q ss_pred EEecccc
Q 046675 150 TVPKLAE 156 (186)
Q Consensus 150 ~~PK~~~ 156 (186)
++.|..+
T Consensus 79 ~L~K~~~ 85 (92)
T cd06468 79 TLAKKKE 85 (92)
T ss_pred EEEeCCC
Confidence 9999864
No 34
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.32 E-value=0.0029 Score=44.22 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=62.0
Q ss_pred ceeEEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCCEEEEEEec
Q 046675 74 RADLMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGVLRITVPK 153 (186)
Q Consensus 74 ~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK 153 (186)
+.||+++++.+.|.+.+.|+.+++++|.++.+.-. ....-...-.|...+.|-..|+++..+-+...+-+.|++.|
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~----v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K 77 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLT----IHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRK 77 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCEEE----EEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEe
Confidence 47999999999999999999999999998764400 00000011247888899999999998888899999999999
Q ss_pred ccc
Q 046675 154 LAE 156 (186)
Q Consensus 154 ~~~ 156 (186)
.++
T Consensus 78 ~~~ 80 (87)
T cd06488 78 AEP 80 (87)
T ss_pred CCC
Confidence 864
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.02 E-value=0.0089 Score=42.62 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=58.1
Q ss_pred CccceeEEEcCCeEEEEEecC-CCCcCCeEEEEecCe---ecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCCE
Q 046675 71 ALARADLMETPTAHVITLDIP-GMKKDNMKIEVEENR---EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGV 146 (186)
Q Consensus 71 ~~p~~dv~e~~~~~~l~~dlP-G~~~edI~V~v~~~~---~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~Gv 146 (186)
....++|.++.+.+.|.+.|| |++++|++|.+..++ ...++. .-.| .|...|+++.-.=++++|-
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~-----~l~G------~L~~~I~~destWtled~k 72 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQE-----VLKG------KLFDSVVADECTWTLEDRK 72 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEE-----EEcC------cccCccCcccCEEEEECCc
Confidence 356789999999999999998 899999999999977 111110 1111 6888999998777787775
Q ss_pred -EEEEEecccc
Q 046675 147 -LRITVPKLAE 156 (186)
Q Consensus 147 -L~I~~PK~~~ 156 (186)
|.|++.|...
T Consensus 73 ~l~I~L~K~~~ 83 (93)
T cd06494 73 LIRIVLTKSNR 83 (93)
T ss_pred EEEEEEEeCCC
Confidence 8999999853
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.51 E-value=0.046 Score=39.87 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=57.7
Q ss_pred cceeEEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 046675 73 ARADLMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGVLRITVP 152 (186)
Q Consensus 73 p~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~P 152 (186)
|.++|.+..+.+.|++.+|+ .+|++|+++.+.-. ..........|.-.+.|-..|++++-+-+...--+.|.+.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~----f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~ 75 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLT----FSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLR 75 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEE----EEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEE
Confidence 67999999999999999999 57899988886510 0110011123666789999999998777766667888999
Q ss_pred cccc
Q 046675 153 KLAE 156 (186)
Q Consensus 153 K~~~ 156 (186)
|.+.
T Consensus 76 K~~~ 79 (106)
T cd00237 76 KGKE 79 (106)
T ss_pred eCCC
Confidence 9863
No 37
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=95.90 E-value=0.03 Score=44.60 Aligned_cols=81 Identities=20% Similarity=0.180 Sum_probs=62.4
Q ss_pred ccceeEEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCCEEEEEE
Q 046675 72 LARADLMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGVLRITV 151 (186)
Q Consensus 72 ~p~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~ 151 (186)
.+++||+++....+|.+-.+|+.++|+.|.+..+.. ....+-+....|+....|-..|.++..+-+.----++|+|
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l----~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L 78 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTL----SIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITL 78 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecceE----EEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEe
Confidence 467899999999999999999999999999997551 1111222223566677788899999877777777889999
Q ss_pred ecccc
Q 046675 152 PKLAE 156 (186)
Q Consensus 152 PK~~~ 156 (186)
+|...
T Consensus 79 ~K~~~ 83 (196)
T KOG1309|consen 79 AKAEI 83 (196)
T ss_pred ccccc
Confidence 99654
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.69 E-value=0.057 Score=47.20 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=63.2
Q ss_pred ccceeEEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCCEEEEEE
Q 046675 72 LARADLMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGVLRITV 151 (186)
Q Consensus 72 ~p~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~ 151 (186)
.+..||+++++.+.|.+.+.|+.++++.|++.++.-. ....-.....|...+.|-..|+++..+.++.---+.|++
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~----v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l 231 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILS----VVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRL 231 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecCEEE----EEEecCCCcceeecccccccccccccEEEEecceEEEEE
Confidence 4678999999999999999999999999999886500 000000112466678999999999988888888999999
Q ss_pred ecccc
Q 046675 152 PKLAE 156 (186)
Q Consensus 152 PK~~~ 156 (186)
.|...
T Consensus 232 ~K~~~ 236 (356)
T PLN03088 232 AKAEP 236 (356)
T ss_pred ecCCC
Confidence 99864
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=95.29 E-value=0.42 Score=33.32 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=52.0
Q ss_pred eeEEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEEee-eeceEEEEEEECCCCcccCceEEEEe--CCEEEEEE
Q 046675 75 ADLMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAE-RTFGKFWRQFRMPMSVDLEHAKAHLE--NGVLRITV 151 (186)
Q Consensus 75 ~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~e-r~~g~f~R~~~LP~~Vd~~~i~A~~~--~GvL~I~~ 151 (186)
.||+++++.+.|.+-..+....+..|.+..+. ......- .....|...+.|=..|+++. +.++. -|-++|++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~----~~l~v~~~~~~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L 75 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ----RELRVEIILGDKSYLLHLDLSNEVQWPC-EVRISTETGKIELVL 75 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC----CEEEEEEECCCceEEEeeeccccCCCCc-EEEEcccCceEEEEE
Confidence 48999999999999999655555444443311 1111110 11234778889999998775 55654 88999999
Q ss_pred eccccc
Q 046675 152 PKLAEE 157 (186)
Q Consensus 152 PK~~~~ 157 (186)
.|.++.
T Consensus 76 ~K~e~~ 81 (87)
T cd06490 76 KKKEPE 81 (87)
T ss_pred EcCCCC
Confidence 998653
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.12 E-value=0.29 Score=34.22 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=52.7
Q ss_pred eEEEcCCeEEEEEecC-C--CCcCCeEEEEecCe---ecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCC-EEE
Q 046675 76 DLMETPTAHVITLDIP-G--MKKDNMKIEVEENR---EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENG-VLR 148 (186)
Q Consensus 76 dv~e~~~~~~l~~dlP-G--~~~edI~V~v~~~~---~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~G-vL~ 148 (186)
.|.++.+++.|.+.|| | +++.||+|.+..+. ...++ ...-.=.|...|+++.-.=++++| .|.
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~----------~~~i~G~L~~~V~~des~Wtled~~~l~ 71 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQ----------PPIIDGELYNEVKVEESSWLIEDGKVVT 71 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCC----------ceEEeCcccCcccccccEEEEeCCCEEE
Confidence 4678888999999996 3 88999999999876 21111 112233678899998877777886 899
Q ss_pred EEEecccc
Q 046675 149 ITVPKLAE 156 (186)
Q Consensus 149 I~~PK~~~ 156 (186)
|++-|...
T Consensus 72 i~L~K~~~ 79 (87)
T cd06492 72 VNLEKINK 79 (87)
T ss_pred EEEEECCC
Confidence 99999853
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=93.94 E-value=0.83 Score=33.04 Aligned_cols=77 Identities=10% Similarity=0.135 Sum_probs=54.8
Q ss_pred ccceeEEEcCCeEEEEEecC-CC-CcCCeEEEEecCe---ecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCC-
Q 046675 72 LARADLMETPTAHVITLDIP-GM-KKDNMKIEVEENR---EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENG- 145 (186)
Q Consensus 72 ~p~~dv~e~~~~~~l~~dlP-G~-~~edI~V~v~~~~---~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~G- 145 (186)
...+.|.++.+.+.|.+.|| |. +.+||+|.+..++ ...+.. ....+ -.=.|+..|+++.-.=++++|
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~------~~~~~-i~G~L~~~V~~des~Wtled~~ 76 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGG------GEKVL-MEGEFTHKINTENSLWSLEPGK 76 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCC------CCceE-EeCcccCcccCccceEEEeCCC
Confidence 35688999999999999999 54 6799999999876 111000 00001 111588899999876777886
Q ss_pred EEEEEEeccc
Q 046675 146 VLRITVPKLA 155 (186)
Q Consensus 146 vL~I~~PK~~ 155 (186)
.|.|++-|..
T Consensus 77 ~l~I~L~K~~ 86 (102)
T cd06495 77 CVLLSLSKCS 86 (102)
T ss_pred EEEEEEEECC
Confidence 5899999974
No 42
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=83.05 E-value=3.1 Score=29.16 Aligned_cols=35 Identities=6% Similarity=0.239 Sum_probs=30.8
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEecccc
Q 046675 121 GKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLAE 156 (186)
Q Consensus 121 g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~~ 156 (186)
..|.-.+.|| .++.+.|+-++++|.|+|..-+...
T Consensus 8 ~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 8 SNVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 3578889999 9999999999999999999987643
No 43
>PRK10743 heat shock protein IbpA; Provisional
Probab=79.55 E-value=6.9 Score=29.68 Aligned_cols=33 Identities=3% Similarity=0.072 Sum_probs=29.1
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeccc
Q 046675 122 KFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLA 155 (186)
Q Consensus 122 ~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~ 155 (186)
.|.-...|| +|+.+.|+-++++|+|+|..-+..
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 377789999 999999999999999999987654
No 44
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=78.69 E-value=11 Score=26.04 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=31.5
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEeccccc
Q 046675 121 GKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLAEE 157 (186)
Q Consensus 121 g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~~~ 157 (186)
..|.-.+.|| .++.+.|+-.+++|.|+|...+....
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 4688899999 79999999999999999998876543
No 45
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=77.49 E-value=6.2 Score=27.23 Aligned_cols=34 Identities=6% Similarity=0.053 Sum_probs=30.0
Q ss_pred ceEEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 046675 120 FGKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKL 154 (186)
Q Consensus 120 ~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~ 154 (186)
...|.-.+.|| +++++.|+.++++|.|+|+.-+.
T Consensus 6 ~d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 6 DDKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred CCeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 34688899999 99999999999999999998764
No 46
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=76.14 E-value=7 Score=27.03 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=29.5
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 046675 121 GKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKL 154 (186)
Q Consensus 121 g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~ 154 (186)
..|.-.+.|| +++++.|+-++.+|.|+|+--+.
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4688899999 99999999999999999998654
No 47
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=75.90 E-value=7.5 Score=26.75 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=29.0
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 046675 122 KFWRQFRMPMSVDLEHAKAHLENGVLRITVPKL 154 (186)
Q Consensus 122 ~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~ 154 (186)
.|.-.+.|| .++++.|+-++++|.|+|+.-|.
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 588889999 99999999999999999998764
No 48
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=75.90 E-value=7 Score=27.04 Aligned_cols=33 Identities=15% Similarity=0.014 Sum_probs=29.8
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeccc
Q 046675 122 KFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLA 155 (186)
Q Consensus 122 ~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~ 155 (186)
.|.-.+.|| .++++.|+-.+++|.|+|+--+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 588899999 999999999999999999997654
No 49
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=75.45 E-value=8.1 Score=26.47 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=29.5
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 046675 121 GKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKL 154 (186)
Q Consensus 121 g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~ 154 (186)
..|.-.+.|| +++++.|+-++.+|.|+|+.-+.
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 3688899999 99999999999999999998654
No 50
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=74.90 E-value=14 Score=25.57 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=28.6
Q ss_pred eEEEEEEECCCCcccCceEEEEeCC-EEEEEEeccc
Q 046675 121 GKFWRQFRMPMSVDLEHAKAHLENG-VLRITVPKLA 155 (186)
Q Consensus 121 g~f~R~~~LP~~Vd~~~i~A~~~~G-vL~I~~PK~~ 155 (186)
..|.-.+.|| +|..+.|+-.+.+| +|+|+--+..
T Consensus 9 ~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~ 43 (92)
T cd06472 9 EAHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKK 43 (92)
T ss_pred CeEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecc
Confidence 3588899999 69999999999865 9999987653
No 51
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=74.63 E-value=29 Score=25.47 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=51.7
Q ss_pred eEEEEEecCCC--CcCCeEEEEecCe-ecccceEEEeee-eceEEEEEEECCCCc-ccCceEEEEeCCEEEEEEeccccc
Q 046675 83 AHVITLDIPGM--KKDNMKIEVEENR-EGVGEKWHRAER-TFGKFWRQFRMPMSV-DLEHAKAHLENGVLRITVPKLAEE 157 (186)
Q Consensus 83 ~~~l~~dlPG~--~~edI~V~v~~~~-~~~~~~~~~~er-~~g~f~R~~~LP~~V-d~~~i~A~~~~GvL~I~~PK~~~~ 157 (186)
+|.|++.+.|= -...+.|.+.+.. ..+.-.....+- ....|..-|....+| +...|+-.|++.+|-...|+..
T Consensus 2 ~Yqv~V~~s~~~~~~g~~~vsL~G~~g~s~~~~i~~g~l~pg~tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~~-- 79 (113)
T cd01759 2 RYKVSVTLSGKKKVTGTILVSLYGNKGNTRQYEIFKGTLKPGNTYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKVG-- 79 (113)
T ss_pred eEEEEEEEecccccCceEEEEEEcCCCCccceEEEeeeecCCCEEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeEE--
Confidence 47777777773 3346777777654 111111111111 223566677777777 7788888899988877667764
Q ss_pred ccCCCeEEEecCCCCC
Q 046675 158 KKRQPKIINIDEESGN 173 (186)
Q Consensus 158 ~~~~~k~I~I~~~~~~ 173 (186)
.++|.|+.+.++
T Consensus 80 ----~~~I~Vq~Ge~~ 91 (113)
T cd01759 80 ----AEKITVQSGKDG 91 (113)
T ss_pred ----EEEEEEEeCCCc
Confidence 456888865433
No 52
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=74.29 E-value=7.9 Score=26.74 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=30.1
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEeccc
Q 046675 121 GKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLA 155 (186)
Q Consensus 121 g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~ 155 (186)
..|.-.+.|| .|+.+.|+-.+++|.|+|..-+..
T Consensus 10 ~~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 10 DEYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 4688899999 799999999999999999887754
No 53
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=74.02 E-value=11 Score=28.88 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=29.1
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeccc
Q 046675 122 KFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLA 155 (186)
Q Consensus 122 ~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~ 155 (186)
.|.-.+.|| +|+.+.|+-.+++|.|+|..-+..
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 377789999 999999999999999999987653
No 54
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=73.39 E-value=8.4 Score=26.13 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=30.6
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEecccc
Q 046675 122 KFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLAE 156 (186)
Q Consensus 122 ~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~~ 156 (186)
.|.-.+.|| ++.++.|+-.++++.|+|+.-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 688999999 6999999999999999999987654
No 55
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=70.72 E-value=8.9 Score=26.41 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=29.1
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 046675 121 GKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKL 154 (186)
Q Consensus 121 g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~ 154 (186)
..|.-.+.|| +++++.|+-.+.+|.|+|..-+.
T Consensus 7 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 7 DKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4688899998 99999999999999999998543
No 56
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=69.54 E-value=18 Score=24.95 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=29.4
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeccc
Q 046675 122 KFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLA 155 (186)
Q Consensus 122 ~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~ 155 (186)
.|.-.+.|| .+.++.|+-+++++.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 578889998 899999999999999999987654
No 57
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=67.62 E-value=15 Score=25.30 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=30.0
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEeccc
Q 046675 121 GKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLA 155 (186)
Q Consensus 121 g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~ 155 (186)
..|.-.+.|| +++++.|+-.+.++.|+|+.-+..
T Consensus 10 ~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 10 DRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred CeEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 3588899999 999999999999999999987643
No 58
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=64.61 E-value=22 Score=24.66 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=28.5
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 046675 121 GKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKL 154 (186)
Q Consensus 121 g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~ 154 (186)
..|.-.+.|| +++.+.|+-++++|.|.|+.-+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 4688899999 89999999999999999999888
No 59
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=63.41 E-value=20 Score=23.72 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=30.7
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEecccc
Q 046675 121 GKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLAE 156 (186)
Q Consensus 121 g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~~ 156 (186)
..|.-.+.|| +++.+.|+-++.++.|.|+.-+...
T Consensus 7 ~~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~~~ 41 (88)
T cd06464 7 DAYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEE 41 (88)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 4688899999 5999999999999999999887754
No 60
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=59.46 E-value=89 Score=24.91 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=55.2
Q ss_pred CccceeEEEcCCeEEEEEecC-CC-CcCCeEEEEecCe---ecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCC
Q 046675 71 ALARADLMETPTAHVITLDIP-GM-KKDNMKIEVEENR---EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENG 145 (186)
Q Consensus 71 ~~p~~dv~e~~~~~~l~~dlP-G~-~~edI~V~v~~~~---~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~G 145 (186)
..+.+.|..+=..+.|.+.+| |+ +..+|.|.+...+ ...+.. -.-.=.|...|+++...=++++|
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~----------~ildG~L~~~vk~des~WtiEd~ 86 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQP----------PILDGELSHSVKVDESTWTIEDG 86 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCC----------ceecCccccccccccceEEecCC
Confidence 456788999999999998886 77 8899999999877 112211 11122467788888877788999
Q ss_pred EEEEEEecccc
Q 046675 146 VLRITVPKLAE 156 (186)
Q Consensus 146 vL~I~~PK~~~ 156 (186)
.+.|++-++..
T Consensus 87 k~i~i~l~K~~ 97 (179)
T KOG2265|consen 87 KMIVILLKKSN 97 (179)
T ss_pred EEEEEEeeccc
Confidence 87777766544
No 61
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=58.34 E-value=33 Score=25.85 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=29.9
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeccc
Q 046675 122 KFWRQFRMPMSVDLEHAKAHLENGVLRITVPKLA 155 (186)
Q Consensus 122 ~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~~ 155 (186)
.|.-.+.|| .++.+.|+-.+.++.|+|+.-+..
T Consensus 51 ~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 51 EYRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 477789999 999999999999999999999875
No 62
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=53.89 E-value=13 Score=24.27 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=16.2
Q ss_pred CceEEEEeCCEEEEEEecccccccCCCeEEEecC
Q 046675 136 EHAKAHLENGVLRITVPKLAEEKKRQPKIINIDE 169 (186)
Q Consensus 136 ~~i~A~~~~GvL~I~~PK~~~~~~~~~k~I~I~~ 169 (186)
..|.|.|+||||.--=|-.-++. ...+|.|..
T Consensus 3 ~~I~aiYe~GvlkPl~~~~L~Eg--~~V~i~I~~ 34 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVDLPEG--EEVKITIEE 34 (60)
T ss_dssp --EEEEEETTEEEECS-----TT--EEEEEEE--
T ss_pred ceEEEEEECCEEEECCCCCCCCC--CEEEEEEec
Confidence 46899999999987655443331 234555544
No 63
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=41.98 E-value=1.1e+02 Score=26.16 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=62.1
Q ss_pred CccceeEEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEEeee----eceEEEEEEECCCCcccCceEEEEeCCE
Q 046675 71 ALARADLMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAER----TFGKFWRQFRMPMSVDLEHAKAHLENGV 146 (186)
Q Consensus 71 ~~p~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~er----~~g~f~R~~~LP~~Vd~~~i~A~~~~Gv 146 (186)
..-+.||..++..+.|.+..-|.-++.-.|+.+.-. .+... ...+|...+.|=.-|+++...+.+-.--
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~-------l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tk 285 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTT-------LHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETK 285 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeE-------EEEEEEecCCCceeeccceeeeeechhhceEEeecce
Confidence 445679999999999999999988887777665522 11112 2235777888877889999999998889
Q ss_pred EEEEEecccccc
Q 046675 147 LRITVPKLAEEK 158 (186)
Q Consensus 147 L~I~~PK~~~~~ 158 (186)
.+|+++|.++..
T Consensus 286 VEIsl~k~ep~s 297 (320)
T KOG1667|consen 286 VEISLKKAEPGS 297 (320)
T ss_pred EEEEEeccCCCC
Confidence 999999998753
No 64
>PF14913 DPCD: DPCD protein family
Probab=41.09 E-value=1.9e+02 Score=23.36 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=54.0
Q ss_pred CCccceeEEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEEeeeeceEEEEEEECCCC------cccCceEEEEe
Q 046675 70 LALARADLMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMS------VDLEHAKAHLE 143 (186)
Q Consensus 70 ~~~p~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~~LP~~------Vd~~~i~A~~~ 143 (186)
+..|-+-=..+...|+-++-==-+.++-.+|+++++. +-.......-.|.+.|.+|+- .+.+.++..+.
T Consensus 84 s~nP~~~r~dTk~~fqWRIRNLPYP~dvYsVtvd~~~-----r~ivvRTtNKKYyKk~~IPDl~R~~l~l~~~~ls~~h~ 158 (194)
T PF14913_consen 84 SSNPIFVRRDTKTSFQWRIRNLPYPKDVYSVTVDEDE-----RCIVVRTTNKKYYKKFSIPDLDRCGLPLEQSALSFAHQ 158 (194)
T ss_pred CCCCEEEEEcCccceEEEEccCCCCccceEEEEcCCC-----cEEEEECcCccceeEecCCcHHhhCCCcchhhceeeee
Confidence 3344444456666777777433456777888887732 222233344568889999953 36778888899
Q ss_pred CCEEEEEEeccc
Q 046675 144 NGVLRITVPKLA 155 (186)
Q Consensus 144 ~GvL~I~~PK~~ 155 (186)
|..|.|+..|-.
T Consensus 159 nNTLIIsYkKP~ 170 (194)
T PF14913_consen 159 NNTLIISYKKPK 170 (194)
T ss_pred cCeEEEEecCcH
Confidence 999999988764
No 65
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=40.39 E-value=14 Score=28.60 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=17.9
Q ss_pred CCCcccCceEEEEeCCEEEEEEe
Q 046675 130 PMSVDLEHAKAHLENGVLRITVP 152 (186)
Q Consensus 130 P~~Vd~~~i~A~~~~GvL~I~~P 152 (186)
-+++..+.--+.|.||||+|.++
T Consensus 66 ~e~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 66 AEEVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred HhhcCccccccccccceEEEEec
Confidence 34555566668899999999998
No 66
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=39.12 E-value=1.4e+02 Score=21.20 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=27.0
Q ss_pred ccCCccceeEEEcCCeEEEEEecCCC-----CcCCeEEEEec
Q 046675 68 QTLALARADLMETPTAHVITLDIPGM-----KKDNMKIEVEE 104 (186)
Q Consensus 68 ~~~~~p~~dv~e~~~~~~l~~dlPG~-----~~edI~V~v~~ 104 (186)
+....|.+.|+++++.|.|.+--+.- +++...|.-++
T Consensus 21 Sv~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~ 62 (95)
T PF12992_consen 21 SVNGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEED 62 (95)
T ss_pred ccCCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeC
Confidence 34567999999999999999876654 55555565444
No 67
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=39.02 E-value=99 Score=20.41 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=26.9
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 046675 122 KFWRQFRMPMSVDLEHAKAHLENGVLRITVP 152 (186)
Q Consensus 122 ~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~P 152 (186)
...-.|.+|..++.+.++..+.+.-|.|.+.
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 3566788999999999999999999999886
No 68
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=37.84 E-value=1.6e+02 Score=23.53 Aligned_cols=79 Identities=10% Similarity=0.088 Sum_probs=50.7
Q ss_pred CccceeEEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEEee-eeceEEEEEEECCCCcccCceEEEEeCCEEEE
Q 046675 71 ALARADLMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAE-RTFGKFWRQFRMPMSVDLEHAKAHLENGVLRI 149 (186)
Q Consensus 71 ~~p~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~e-r~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I 149 (186)
..|.+-|.+..+-+.+++.|+--+-.. |.++... -.+.+.. .....+...|.|=..||+++.+-+-. +-+..
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved~~d~~--v~~e~~~----l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~-~r~if 78 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVEDAKDVH--VNLEPSK----LTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRT-SRSIF 78 (180)
T ss_pred cCCcchhhhhcCeEEEEEEeccCccce--eeccccE----EEEEeccCCCceeeEEeeehhhhcCHhhcccccc-ceEEE
Confidence 467888999999999999998655444 4444432 0111111 11224666799999999998777766 66666
Q ss_pred EEecccc
Q 046675 150 TVPKLAE 156 (186)
Q Consensus 150 ~~PK~~~ 156 (186)
.++++..
T Consensus 79 ~i~~K~e 85 (180)
T KOG3158|consen 79 CILRKKE 85 (180)
T ss_pred EEEEccc
Confidence 6665543
No 69
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=37.57 E-value=1.7e+02 Score=21.71 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=43.3
Q ss_pred ccceeEEEcCCeEEEEEecCCCCcCCeEEEEecCe---ecc-cc-----eEEEeeeeceEEEEEEECCCCcccCceEEEE
Q 046675 72 LARADLMETPTAHVITLDIPGMKKDNMKIEVEENR---EGV-GE-----KWHRAERTFGKFWRQFRMPMSVDLEHAKAHL 142 (186)
Q Consensus 72 ~p~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~---~~~-~~-----~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~ 142 (186)
...+.|...++ ..+++.. ..+.++++.+++. ... .. .+..... ...-.-.+.||.+...++++...
T Consensus 65 ~~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i~~ 139 (166)
T PF13349_consen 65 NGDVEIKPSDD-DKIKVEY---NGKKPEISVEGGTLTIKSKDRESFFFKGFNFNNS-DNKSKITIYLPKDYKLDKIDIKT 139 (166)
T ss_pred ceeEEEEEcCC-ccEEEEE---cCcEEEEEEcCCEEEEEEecccccccceEEEccc-CCCcEEEEEECCCCceeEEEEEe
Confidence 34566666554 3334444 2125777777766 111 11 1111111 23456678999999888999999
Q ss_pred eCCEEEEE
Q 046675 143 ENGVLRIT 150 (186)
Q Consensus 143 ~~GvL~I~ 150 (186)
.+|-++|.
T Consensus 140 ~~G~i~i~ 147 (166)
T PF13349_consen 140 SSGDITIE 147 (166)
T ss_pred ccccEEEE
Confidence 99988876
No 70
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=34.77 E-value=1e+02 Score=24.14 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=18.2
Q ss_pred EECCCCcccCceE-EEEeCCEEEEEEecc
Q 046675 127 FRMPMSVDLEHAK-AHLENGVLRITVPKL 154 (186)
Q Consensus 127 ~~LP~~Vd~~~i~-A~~~~GvL~I~~PK~ 154 (186)
+.=|..|.+...+ +...+|.+++++|+.
T Consensus 160 ~~~p~~V~p~~~~~~~~~~~~~~~~lp~~ 188 (189)
T smart00813 160 FEDPNKVVPVTSTLAAVEGGTLTVTLPPH 188 (189)
T ss_pred CCCCCeeeccccCCceeeCCEEEEEeCCC
Confidence 3455556555543 345778999999863
No 71
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=33.16 E-value=1.3e+02 Score=23.09 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=21.0
Q ss_pred EEECCCCcccCceEEEEeCCEEEEEEecc
Q 046675 126 QFRMPMSVDLEHAKAHLENGVLRITVPKL 154 (186)
Q Consensus 126 ~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~ 154 (186)
++.=|..|-+..-.....+|-+++++|+.
T Consensus 148 t~~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 148 TFENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp CSSSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 34557888888666666799999999963
No 72
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=32.89 E-value=52 Score=23.80 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.3
Q ss_pred ceEEEEeCCEEEEEEecc
Q 046675 137 HAKAHLENGVLRITVPKL 154 (186)
Q Consensus 137 ~i~A~~~~GvL~I~~PK~ 154 (186)
.+.+.+.+|||+|.++..
T Consensus 31 d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 31 DIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp TEEEEEETTEEEEEETTS
T ss_pred ceEEEccCCEEEEEECCC
Confidence 578999999999999643
No 73
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=32.75 E-value=22 Score=30.65 Aligned_cols=82 Identities=12% Similarity=-0.014 Sum_probs=60.0
Q ss_pred ccceeEEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEE-eeeeceEEEEEEECCCCcccCceEEEEeCCEEEEE
Q 046675 72 LARADLMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHR-AERTFGKFWRQFRMPMSVDLEHAKAHLENGVLRIT 150 (186)
Q Consensus 72 ~p~~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~-~er~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~ 150 (186)
...+|+.++.....|-+.-|-+..++|++.+++|.-. ... -++..--+...++|-..|+++...-+.---++.|+
T Consensus 176 ~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~----I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~ 251 (368)
T COG5091 176 EIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLS----ISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVH 251 (368)
T ss_pred eeeeeccccceeEEEEEecCCCCccccceeecCCcce----eeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheeh
Confidence 3567788888888898999999999999999998611 111 12222235567889999999987766644788888
Q ss_pred Eeccccc
Q 046675 151 VPKLAEE 157 (186)
Q Consensus 151 ~PK~~~~ 157 (186)
+-|....
T Consensus 252 l~KV~~v 258 (368)
T COG5091 252 LRKVEMV 258 (368)
T ss_pred hhhhhhh
Confidence 8887654
No 74
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=32.64 E-value=45 Score=24.09 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.6
Q ss_pred CceEEEEeCCEEEEEEe
Q 046675 136 EHAKAHLENGVLRITVP 152 (186)
Q Consensus 136 ~~i~A~~~~GvL~I~~P 152 (186)
..+.+.+.+|||+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 45678889999999998
No 75
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=31.94 E-value=94 Score=21.80 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=26.8
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEE
Q 046675 122 KFWRQFRMPMSVDLEHAKAHLENGVLRITV 151 (186)
Q Consensus 122 ~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~ 151 (186)
...-+|.||.++..+.+...++..-|+|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 355678999999999999999999999997
No 76
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=31.37 E-value=1.7e+02 Score=19.83 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=41.0
Q ss_pred CCeEEEEEecCCCCcCCeEEEEecCee-cccce--EEEeeeeceEEEE--EEECCCCcccCceEEEEeCCE
Q 046675 81 PTAHVITLDIPGMKKDNMKIEVEENRE-GVGEK--WHRAERTFGKFWR--QFRMPMSVDLEHAKAHLENGV 146 (186)
Q Consensus 81 ~~~~~l~~dlPG~~~edI~V~v~~~~~-~~~~~--~~~~er~~g~f~R--~~~LP~~Vd~~~i~A~~~~Gv 146 (186)
++...|...+-||-+.+|.|+...+.+ ...+. ........|.|.. .+.+... +.+..++...+.-
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~-~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPE-DKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCC-CCCEEEEEEEeCC
Confidence 467899999999999999999887651 11111 0111223455654 5666554 6677777775543
No 77
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=30.36 E-value=1.7e+02 Score=21.99 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=37.1
Q ss_pred CCeEEEEEecCCCCcCCeEEEEecCeecccceEEEeeeeceEEEEEEECCCCcccCce--EEEEeCCEEEEEEeccc
Q 046675 81 PTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHA--KAHLENGVLRITVPKLA 155 (186)
Q Consensus 81 ~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i--~A~~~~GvL~I~~PK~~ 155 (186)
++.+...+ ++..+ -.|+|.+.... ......|.+++|..|.-+.| ++.+.+ .|.+.+|+..
T Consensus 37 ~g~VsFea-i~D~~-a~V~v~~~~~~------------~~~~~~R~i~VPF~V~~d~i~V~Svls~-~~~~~ip~G~ 98 (125)
T PF11033_consen 37 DGAVSFEA-ISDGA-AEVEVTLNEKF------------EAEDAQRTISVPFTVKGDGIEVSSVLSE-KLSFDIPKGD 98 (125)
T ss_pred CCcEEEee-ecCCe-EEEEEEeCCcc------------cCccceEEEEeeEEEcCCCEEEEEeecC-cEEEecCCCc
Confidence 44455555 33332 55666655521 12357899999999976665 555666 5888888654
No 78
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=29.83 E-value=49 Score=23.96 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.5
Q ss_pred eEEEEeCCEEEEEEecc
Q 046675 138 AKAHLENGVLRITVPKL 154 (186)
Q Consensus 138 i~A~~~~GvL~I~~PK~ 154 (186)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 66888999999999854
No 79
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=29.68 E-value=47 Score=23.90 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.3
Q ss_pred ceEEEEeCCEEEEEEec
Q 046675 137 HAKAHLENGVLRITVPK 153 (186)
Q Consensus 137 ~i~A~~~~GvL~I~~PK 153 (186)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 36788899999999984
No 80
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=29.56 E-value=1.3e+02 Score=24.35 Aligned_cols=77 Identities=8% Similarity=0.134 Sum_probs=49.3
Q ss_pred eeEEEcCCeEEEEEecCCCCcCCeEEEEecCeecccceEEEeeeeceEEEEEE-ECCCCcccCceEEEEeCCEEEEEEec
Q 046675 75 ADLMETPTAHVITLDIPGMKKDNMKIEVEENREGVGEKWHRAERTFGKFWRQF-RMPMSVDLEHAKAHLENGVLRITVPK 153 (186)
Q Consensus 75 ~dv~e~~~~~~l~~dlPG~~~edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~-~LP~~Vd~~~i~A~~~~GvL~I~~PK 153 (186)
+-|-+.++-+.+-+.|-||..++++|++..+.- ..+...-..-.|.-.+ .|-..|++++-.-..+-....|.+.|
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sl----dl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kk 152 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSL----DLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKK 152 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecccce----eeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehh
Confidence 567788888999999999999999999998760 0000000111122111 24456788877777777777777755
Q ss_pred cc
Q 046675 154 LA 155 (186)
Q Consensus 154 ~~ 155 (186)
.+
T Consensus 153 Ve 154 (224)
T KOG3260|consen 153 VE 154 (224)
T ss_pred hh
Confidence 44
No 81
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=28.51 E-value=2e+02 Score=19.74 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=14.0
Q ss_pred ceEEEEeCCEEEEEEecc
Q 046675 137 HAKAHLENGVLRITVPKL 154 (186)
Q Consensus 137 ~i~A~~~~GvL~I~~PK~ 154 (186)
.+++.++||-.++++-..
T Consensus 69 ~l~i~~kDgk~r~~~~~i 86 (91)
T PF14730_consen 69 TLIIDCKDGKYRLTITNI 86 (91)
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 567888999988887653
No 82
>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL). LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=28.39 E-value=2.6e+02 Score=21.07 Aligned_cols=65 Identities=11% Similarity=-0.030 Sum_probs=37.0
Q ss_pred eEEEEEecCCCC-----cCCeEEEEecCee-cccceEEEeee--eceEEEEEEECCCCc-ccCceEEEEeCCEE
Q 046675 83 AHVITLDIPGMK-----KDNMKIEVEENRE-GVGEKWHRAER--TFGKFWRQFRMPMSV-DLEHAKAHLENGVL 147 (186)
Q Consensus 83 ~~~l~~dlPG~~-----~edI~V~v~~~~~-~~~~~~~~~er--~~g~f~R~~~LP~~V-d~~~i~A~~~~GvL 147 (186)
+|.|++.+-|-+ ...+.|.+.+... .+.-.....++ ....+.--|..+.++ +...|+-.++|..+
T Consensus 2 hYqVtV~~~~~~~~~~t~~~v~i~L~G~~g~S~~~~l~~~~~~~~G~t~sfLi~t~~dlG~L~~vk~~W~~n~~ 75 (137)
T cd01758 2 HYQLKIHFFNQTNRIETDPTFTISLYGTLGESENLPLTLPEGITGNKTNSFLITTEKDIGDLLMLKLKWEGSSL 75 (137)
T ss_pred eEEEEEEEecccCCCcccceEEEEEEcCCCcccCEEEecCcccCCCCeEEEEEECCCCcCCEEEEEEEEeCCCC
Confidence 577777776532 2367787776551 11111111111 234566667777777 77888887866654
No 83
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=28.27 E-value=4.7e+02 Score=24.00 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=37.5
Q ss_pred eeEEEcCCeEEEEEecCCC---CcCC--eEEEEecCe-ecccceEEEeeeeceEEEEEEECCCCccc
Q 046675 75 ADLMETPTAHVITLDIPGM---KKDN--MKIEVEENR-EGVGEKWHRAERTFGKFWRQFRMPMSVDL 135 (186)
Q Consensus 75 ~dv~e~~~~~~l~~dlPG~---~~ed--I~V~v~~~~-~~~~~~~~~~er~~g~f~R~~~LP~~Vd~ 135 (186)
.-+..+++.+.|.+-+|.. +-.+ |+|+.+.+. ....-++.........|.-.|.+|.-...
T Consensus 388 ~iy~~~~~~l~v~ly~~s~~~~~~~~~~v~i~q~T~yP~~~~v~i~v~~~~~~~f~l~lRIP~Wa~~ 454 (520)
T PF07944_consen 388 YIYFRDDDGLYVNLYIPSELTWPVGGGTVTITQETDYPFEGTVRITVSPDKPVPFTLRLRIPSWAKG 454 (520)
T ss_pred hheEecCCEEEEEEEcceEEEEEECCcEEEEEEecCCCCCCCEEEEEEcCCCccEEEEEEccCCCCC
Confidence 3456778888888888862 2233 555555554 22222333444566789999999977533
No 84
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=26.11 E-value=4.1e+02 Score=24.21 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=50.2
Q ss_pred eEEEEEecCCCCc-----CCeEEEEecCe-ecccceEEEeee-eceEEEEEEECCCCc-ccCceEEEEeCCEEEE-----
Q 046675 83 AHVITLDIPGMKK-----DNMKIEVEENR-EGVGEKWHRAER-TFGKFWRQFRMPMSV-DLEHAKAHLENGVLRI----- 149 (186)
Q Consensus 83 ~~~l~~dlPG~~~-----edI~V~v~~~~-~~~~~~~~~~er-~~g~f~R~~~LP~~V-d~~~i~A~~~~GvL~I----- 149 (186)
+|.|++.+.|-++ ..+.|++.+.. ..+.-.....+. ....|..-|..+.+| +...|+-.|++..|-.
T Consensus 310 ~y~v~v~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~t~~~~i~~~~~~g~~~~v~~~w~~~~~~~~~~~~ 389 (442)
T TIGR03230 310 HYQVKVHFFGKTSLSHTDQPMKISLYGTHGEKENIPFTLPEVSTNKTYSFLITTDVDIGELLMVKLKWEKDTYISWSDWW 389 (442)
T ss_pred EEEEEEEEeccccccccCCcEEEEEEcCCCCccceEEeeeeecCCCeEEEEEecccCCCceEEEEEEEeCCCcccchhhh
Confidence 5788888877432 26788887654 111111221122 233577777788888 7888888998877632
Q ss_pred EEecccccccCCCeEEEecCCC
Q 046675 150 TVPKLAEEKKRQPKIINIDEES 171 (186)
Q Consensus 150 ~~PK~~~~~~~~~k~I~I~~~~ 171 (186)
..|+.. .++|.|+.+.
T Consensus 390 ~~~~~~------~~~i~v~~ge 405 (442)
T TIGR03230 390 SSPGFH------IRKLRIKSGE 405 (442)
T ss_pred cCCcee------EEEEEEEeCC
Confidence 256553 3467777554
No 85
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=25.84 E-value=2.2e+02 Score=19.34 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=23.4
Q ss_pred CCcCCeEEEEecCeecccceEEE-eeeeceEEEEEEECCCCcccC
Q 046675 93 MKKDNMKIEVEENREGVGEKWHR-AERTFGKFWRQFRMPMSVDLE 136 (186)
Q Consensus 93 ~~~edI~V~v~~~~~~~~~~~~~-~er~~g~f~R~~~LP~~Vd~~ 136 (186)
.....+.|.+.+.....-.++.. .....|.|.-.|.||.++..-
T Consensus 33 ~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G 77 (99)
T PF01835_consen 33 PANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLG 77 (99)
T ss_dssp ESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---E
T ss_pred ccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCE
Confidence 44467888888754111112222 234689999999999887544
No 86
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=24.05 E-value=2.4e+02 Score=20.24 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=25.0
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 046675 121 GKFWRQFRMPMSVDLEHAKAHLENGVLRITVPKL 154 (186)
Q Consensus 121 g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~~PK~ 154 (186)
.+-...|+||.++-..+.++.+.+..+.=.+-.+
T Consensus 35 ~E~~y~fpLp~~A~i~~f~~~i~g~~i~g~v~ek 68 (118)
T PF08487_consen 35 LEAVYSFPLPEGAAISGFSMWIGGRTIEGEVKEK 68 (118)
T ss_pred EEEEEEeECCCCeEEEEEEEEECCEEEEEEEecH
Confidence 3566789999999999999988666655444433
No 87
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=23.59 E-value=4.3e+02 Score=21.94 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=33.5
Q ss_pred EecCCCCcCCeEEEEec--Ce----ecccceEEEeeeeceEEEEEEECCCCcccCceEEEEeCCEEEEE
Q 046675 88 LDIPGMKKDNMKIEVEE--NR----EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGVLRIT 150 (186)
Q Consensus 88 ~dlPG~~~edI~V~v~~--~~----~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~A~~~~GvL~I~ 150 (186)
-.|||+..+==-|+.+. +. ..+......-. ..|..-|++.|...-|++.|+. +.||.+.|+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els-~~G~vlr~i~l~g~~D~EgI~y-~g~~~~vl~ 81 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELS-LDGKVLRRIPLDGFGDYEGITY-LGNGRYVLS 81 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEE-TT--EEEEEE-SS-SSEEEEEE--STTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEc-CCCCEEEEEeCCCCCCceeEEE-ECCCEEEEE
Confidence 46999988633344543 33 33333444333 4588999999998889999854 688887775
No 88
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=23.56 E-value=1.7e+02 Score=19.35 Aligned_cols=70 Identities=10% Similarity=-0.009 Sum_probs=45.5
Q ss_pred EcCCeEEEEEecCCCCcCCeEEEEecCe-ecccce--EEEeeeeceEEEEE--EECCCCc--ccCceEEEEeCCEEE
Q 046675 79 ETPTAHVITLDIPGMKKDNMKIEVEENR-EGVGEK--WHRAERTFGKFWRQ--FRMPMSV--DLEHAKAHLENGVLR 148 (186)
Q Consensus 79 e~~~~~~l~~dlPG~~~edI~V~v~~~~-~~~~~~--~~~~er~~g~f~R~--~~LP~~V--d~~~i~A~~~~GvL~ 148 (186)
..++...|...+-|+.+.++.|+...+. ...... ........|.|... +.++..- +....++..++.-|.
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 3467888899999999999999988866 222222 23334455566654 5555443 667788888776653
No 89
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=23.55 E-value=52 Score=23.48 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=13.0
Q ss_pred EEEEeCCEEEEEEecc
Q 046675 139 KAHLENGVLRITVPKL 154 (186)
Q Consensus 139 ~A~~~~GvL~I~~PK~ 154 (186)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 5778999999999643
No 90
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=23.34 E-value=1.2e+02 Score=19.39 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=23.3
Q ss_pred eeEE-EcCCeEEEEEecCCCCcCCeEEEEecC
Q 046675 75 ADLM-ETPTAHVITLDIPGMKKDNMKIEVEEN 105 (186)
Q Consensus 75 ~dv~-e~~~~~~l~~dlPG~~~edI~V~v~~~ 105 (186)
+.+. -....|.|++..||+..-.-.|.+..+
T Consensus 27 ~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~ 58 (71)
T PF08308_consen 27 LTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPG 58 (71)
T ss_pred ceeeecCCccEEEEEEECCCeeEEEEEEECCC
Confidence 4555 346689999999999888777877753
No 91
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=21.82 E-value=91 Score=20.47 Aligned_cols=31 Identities=19% Similarity=0.589 Sum_probs=22.1
Q ss_pred cCCCCcCCeEEEEecCeecccceEEEeeeeceEEEEEEECCCCcccCceE
Q 046675 90 IPGMKKDNMKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAK 139 (186)
Q Consensus 90 lPG~~~edI~V~v~~~~~~~~~~~~~~er~~g~f~R~~~LP~~Vd~~~i~ 139 (186)
+-.++++..+|.++++. ++.||.+++.+.++
T Consensus 9 I~~id~~~~titLdDGk-------------------sy~lp~ef~~~~L~ 39 (61)
T PF07076_consen 9 IKSIDPETMTITLDDGK-------------------SYKLPEEFDFDGLK 39 (61)
T ss_pred EEEEcCCceEEEecCCC-------------------EEECCCcccccccC
Confidence 34567778888887733 67888888877543
Done!