RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 046675
(186 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 128 bits (323), Expect = 2e-38
Identities = 58/144 (40%), Positives = 73/144 (50%), Gaps = 13/144 (9%)
Query: 36 SPFFDMTFPMTEEPFRVLEQTPLTIVKVADHHQTLALARADLMETPTAHVITLDIPGMKK 95
S FD + +PF I A AR D ETP AHV D+PG+KK
Sbjct: 7 SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 66
Query: 96 DNMKIEVEENR------------EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLE 143
+ +K+EVE+ E +KWHR ER+ GKF R+FR+ +E KA LE
Sbjct: 67 EEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLE 126
Query: 144 NGVLRITVPKLAEEKKRQPKIINI 167
NGVL +TVPK AE KK + K I I
Sbjct: 127 NGVLTVTVPK-AEVKKPEVKAIQI 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 113 bits (286), Expect = 2e-33
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 74 RADLMETPTAHVITLDIPGMKKDNMKIEVEEN-----------REGVGEKWHRAERTFGK 122
R D+ E V+ D+PG+ +++++++ E++ R ER +G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGS 65
Query: 123 FWRQFRMPMSVDLEHAKAHLENGVLRITVPKLAE 156
F R+F +P S D + A NGVL I +PK
Sbjct: 66 FHRRFALPDSADADGITAAGRNGVLEIRIPKRPA 99
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 107 bits (270), Expect = 2e-30
Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 12/141 (8%)
Query: 36 SPFFDMTFPMTEEPFRVLEQTPLTIVKVADHHQTLALARADLMETPTAHVITLDIPGMKK 95
+ T + V ++E + +PG+ K
Sbjct: 20 ATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAWLPGVNK 79
Query: 96 DNMKIEVEEN-----------REGVGEKWHRAE-RTFGKFWRQFRMPMSVDLEHAKAHLE 143
+++ + + E+ +E + +R ++P +V E+A A E
Sbjct: 80 EDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFE 139
Query: 144 NGVLRITVPKLAEEKKRQPKI 164
NGVL + +PK K+ I
Sbjct: 140 NGVLSVILPKAESSIKKGINI 160
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 101 bits (254), Expect = 2e-28
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 68 QTLALARADLMETPTAHVITLDIPGMKKDNMKIEVEEN--------REGVGEKWHRAERT 119
L D+ E V+ D+ G K+ +K V RE +
Sbjct: 20 YELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQR 79
Query: 120 FGKFWRQFRMPMSVDLE-HAKAHLENGVLRITVPKLAEEKKR 160
+ R+P +V + ENGVL I +P +
Sbjct: 80 PKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 69.0 bits (169), Expect = 6e-16
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 11/99 (11%)
Query: 75 ADLMETPTAHVITLDIPGMKKDNMKIEVEEN-------REGVGEKWHRAERTFGKFWRQF 127
A + P + LD+ + + ++V + E ++ R +F R++
Sbjct: 4 AQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAR---EFHRRY 60
Query: 128 RMPMSVDLEHAKAHL-ENGVLRITVPKLAEEKKRQPKII 165
R+P VD + L GVL I + +
Sbjct: 61 RLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPA 99
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 68.7 bits (168), Expect = 7e-16
Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 75 ADLMETPTAHVITLDIPGMKKDNMKIEVEENREGV----GEKWHRAERTFGKFWRQFRMP 130
+++ VI LD+ +++ ++V+E+ + E+ +F R++R+P
Sbjct: 5 SEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLP 64
Query: 131 MSVDLEHAKAHL-ENGVLRITVPKL--AEEKKRQPKIINI 167
+VD L +G+L + PK+ + + I +
Sbjct: 65 SNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPV 104
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 62.5 bits (152), Expect = 1e-13
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 85 VITLDIPGMKKDNMKIEVEEN-------REGVGEKWHRAERTFGKFWRQFRMPMSVDLEH 137
+ LD+ + +K++V + E ++ R +F R++R+P VD
Sbjct: 9 SVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISR---EFHRKYRIPADVDPLT 65
Query: 138 AKAHL-ENGVLRITVPKLAEEKKRQ 161
+ + +GVL + P+ +
Sbjct: 66 ITSSMSSDGVLTVNGPRKQVSGPER 90
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 63.8 bits (155), Expect = 3e-13
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Query: 66 HHQTLALARADLMETPTAHVITLDIPGMKKDNMKIEVEENREGV----GEKWHRAERTFG 121
+++ + LD+ + +K++V + V E+
Sbjct: 57 APSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISR 116
Query: 122 KFWRQFRMPMSVDLEHAKAHL-ENGVLRITVPKLAEEKKRQPKIINIDEES 171
+F R++R+P VD + L +GVL + P+ + I I E
Sbjct: 117 EFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGP--ERTIPITREE 165
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 60.8 bits (148), Expect = 4e-13
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 79 ETPTAHVITLDIPGMKKDNMKIEVEENREGV-GEKWHRAERT---FGKFWRQFRMPMSVD 134
T ++LD+ D + ++ ++ + G+ R + F R++ +P VD
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVD 63
Query: 135 LEHAKAHL-ENGVLRITVPK 153
+ L G L + P
Sbjct: 64 PTQVSSSLSPEGTLTVEAPM 83
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 55.6 bits (133), Expect = 8e-10
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 91 PGMKKDNMKIEVEENREGV-------GEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLE 143
P ++K+ + N+ V + + + +F++ F P VD +A +
Sbjct: 243 PHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIV 302
Query: 144 NGVLRITVPKL 154
+G++ + P
Sbjct: 303 DGLMVVEAPLF 313
Score = 45.6 bits (107), Expect = 2e-06
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 85 VITLDIPGMKKDNMKIEVEENR---EGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAH 141
+ ++ K + + I+ ++N+ R +P SVD H +A
Sbjct: 115 KVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQAT 174
Query: 142 L-ENGVLRITVPKLAEEKKRQP 162
+ + VL I P K
Sbjct: 175 ITTDDVLVIEAPVNEPNYKAIK 196
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.027
Identities = 26/176 (14%), Positives = 48/176 (27%), Gaps = 64/176 (36%)
Query: 15 VMAATLMNMAS-----QANALMLYTQSPFF-----DMTFPMTEEPFRVLEQ--------- 55
++ A + + T FF +P T P +LE
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 56 TP------LTIVKVADH----------HQTLALARADLMETPTAHVIT---LDIPGMKKD 96
+P LT +V D+ + + ++ L+ V++ + G+
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLT 392
Query: 97 NMKIEVEENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLENGVLRITVP 152
K + + Q R+P S K N L + P
Sbjct: 393 LRKAKAPSGLD------------------QSRIPFS----ERKLKFSNRFLPVASP 426
Score = 28.5 bits (63), Expect = 1.5
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 32/116 (27%)
Query: 91 PGMKKDNMKIEVEENREGVGEKWHRAER----TFGKFWRQFRM-------PMSVDL---- 135
GM D + + + + W+RA+ T+G F + P+++ +
Sbjct: 1629 QGMGMD-----LYKTSKAAQDVWNRADNHFKDTYG-----FSILDIVINNPVNLTIHFGG 1678
Query: 136 EHAKAHLENGVLRITVPKLAEEKKRQPKIIN-IDEE-SGNSF---DEDIKATK-AQ 185
E K EN + + + K + KI I+E + +F + AT+ Q
Sbjct: 1679 EKGKRIREN-YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
>3jyh_A Dipeptidyl-peptidase 2; structural genomics, structural genomics
consortium, SGC, aminopeptidase, cleavage on PAIR of
basic residues; HET: NAG BMA; 2.19A {Homo sapiens} PDB:
3n0t_A*
Length = 469
Score = 27.2 bits (59), Expect = 3.8
Identities = 12/75 (16%), Positives = 29/75 (38%)
Query: 13 FLVMAATLMNMASQANALMLYTQSPFFDMTFPMTEEPFRVLEQTPLTIVKVADHHQTLAL 72
F +A + +A++ AL+++ + ++ + P + + LT+ + L
Sbjct: 61 FANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLR 120
Query: 73 ARADLMETPTAHVIT 87
A + A I
Sbjct: 121 ALRRDLGAQDAPAIA 135
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Length = 274
Score = 26.8 bits (59), Expect = 4.0
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 59 TIVKVADHHQTLALARADLMETPTAHVITLDI 90
+V V L RA L + P V T D+
Sbjct: 106 RVVYVDIDPMVLTHGRALLAKDPNTAVFTADV 137
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 26.6 bits (59), Expect = 5.1
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 68 QTLALARADLMETPTAHVITLDIPG---MKKDNMKIEVEENREGVGEKWHRAERTFGKFW 124
T A L + A +TL P M + + + + VG K + +
Sbjct: 259 STETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYR 318
Query: 125 RQFRMPMSVDLEHAKAHLENGVLRITV 151
F M L+ ++ G +R +
Sbjct: 319 WAFFMASGPCLDDIAELVDAGKIRPVI 345
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 26.5 bits (59), Expect = 6.7
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 101 EVEENREGVG--EKWHRAERTFGKFWRQFRMPMSVDLEHA 138
EV + R G + E F KF F P+ +E A
Sbjct: 92 EVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQFVMEGA 131
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein;
structural genomics, EFI, enzyme function initiative,
metal protein; HET: MSE; 1.50A {Paracoccus
denitrificans} PDB: 3n4e_A*
Length = 393
Score = 26.1 bits (58), Expect = 7.4
Identities = 4/39 (10%), Positives = 13/39 (33%)
Query: 14 LVMAATLMNMASQANALMLYTQSPFFDMTFPMTEEPFRV 52
+ A + +++ + + +D P+ P
Sbjct: 304 VGHFANIHVLSTLMHMTKPVELADRWDRGRPVFRNPAEP 342
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.376
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,851,527
Number of extensions: 166995
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 23
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)