RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 046675
         (186 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 89.4 bits (221), Expect = 8e-24
 Identities = 57/144 (39%), Positives = 73/144 (50%), Gaps = 13/144 (9%)

Query: 36  SPFFDMTFPMTEEPFRVLEQTPLTIVKVADHHQTLALARADLMETPTAHVITLDIPGMKK 95
           S  FD    +  +PF         I          A AR D  ETP AHV   D+PG+KK
Sbjct: 6   SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 65

Query: 96  DNMKIEV------------EENREGVGEKWHRAERTFGKFWRQFRMPMSVDLEHAKAHLE 143
           + +K+EV             + +E   +KWHR ER+ GKF R+FR+     +E  KA LE
Sbjct: 66  EEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLE 125

Query: 144 NGVLRITVPKLAEEKKRQPKIINI 167
           NGVL +TVPK AE KK + K I I
Sbjct: 126 NGVLTVTVPK-AEVKKPEVKAIQI 148


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 78.1 bits (192), Expect = 8e-20
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 12/101 (11%)

Query: 76  DLMETPTAHVITLDIPGMKKDNMKIEVE------------ENREGVGEKWHRAERTFGKF 123
            ++E      +   +PG+ K+++ +                         +       + 
Sbjct: 14  SIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEI 73

Query: 124 WRQFRMPMSVDLEHAKAHLENGVLRITVPKLAEEKKRQPKI 164
           +R  ++P +V  E+A A  ENGVL + +PK     K+   I
Sbjct: 74  YRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINI 114


>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
           USP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 26.1 bits (57), Expect = 1.9
 Identities = 5/41 (12%), Positives = 15/41 (36%), Gaps = 10/41 (24%)

Query: 65  DHHQTLALARADLMETPTAHVITLDIPGMKKDNMKIEVEEN 105
           D ++            P + V+ + +  + +D  ++   E 
Sbjct: 23  DSYEK----------GPDSVVVHVYVKEICRDTSRVLFREQ 53


>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 161

 Score = 24.3 bits (52), Expect = 8.9
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 112 KWHRAERTFGKFWRQFRMPMSVDL 135
           +W + +   G FW   R  +++ L
Sbjct: 133 EWPKEKSKRGLFWANLRAAINIKL 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0570    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 666,619
Number of extensions: 29486
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 4
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)