BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046676
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 11/109 (10%)
Query: 68 IPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLN 127
+P FL K + LV D D +I W +G SF V+D +F++ +LP+ FKHNN +SFVRQLN
Sbjct: 17 VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLN 76
Query: 128 TYGFRKI-----------DTDRWEFANEAFQRGRRHLLKNIRRRKSPQS 165
YGFRK+ + D EF + F RG+ LL+NI+R+ + S
Sbjct: 77 MYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVS 125
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
Length = 106
Score = 90.5 bits (223), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/103 (42%), Positives = 63/103 (61%), Gaps = 10/103 (9%)
Query: 68 IPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLN 127
+P FLAK + LVDD + +I W G+SFV+ + +F++ +LP N+KHNN +SF+RQLN
Sbjct: 4 VPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLN 63
Query: 128 TYGFRKI----------DTDRWEFANEAFQRGRRHLLKNIRRR 160
YGF KI D D EF++ F+R LL I+R+
Sbjct: 64 MYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX
Length = 102
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 69 PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
P F+ K + +V+D S + I W ++GES VV + F + +LP+ FKH+NF+SFVRQLN
Sbjct: 13 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 72
Query: 129 YGFRKI-----------DTDRWEFANE 144
YG+ K+ + RWEF NE
Sbjct: 73 YGWHKVQDVKSGSMLSNNDSRWEFENE 99
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Tail-To-Tail Orientation
pdb|1FYM|B Chain B, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Tail-To-Tail Orientation
pdb|2HTS|A Chain A, Crystal Structure Of The Dna Binding Domain Of The Heat
Shock Transcription Factor
pdb|3HSF|A Chain A, Heat Shock Transcription Factor (Hsf)
Length = 92
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 69 PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
P F+ K + +V+D S + I W ++GES VV + F + +LP+ FKH+NF+SFVRQLN
Sbjct: 3 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 129 YGFRKI-----------DTDRWEFANE 144
YG+ K+ + RWEF NE
Sbjct: 63 YGWHKVQDVKSGSMLSNNDSRWEFENE 89
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
pdb|1FBU|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Length = 90
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 69 PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
P F+ K + +V+D S + I W ++GES VV + F + +LP+ FKH+NF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 129 YGFRKI-----------DTDRWEFANE 144
YG+ K+ + RWEF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna That Is Translationally Disordered
pdb|1FYL|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Head-To-Head Orientation
pdb|1FYL|B Chain B, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Head-To-Head Orientation
Length = 92
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 69 PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
P F+ K + V+D S + I W ++GES VV + F + +LP+ FKH+NF+SFVRQLN
Sbjct: 3 PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 129 YGFRKI-----------DTDRWEFANE 144
YG+ K+ + RWEF NE
Sbjct: 63 YGWHKVQDVKSGSXLSNNDSRWEFENE 89
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 69 PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
P F+ K + +V+D S + I W ++GES VV + F + +L + FKH+NF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 129 YGFRKI-----------DTDRWEFANE 144
YG+ K+ + RWEF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
pdb|1FBQ|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
Length = 90
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 69 PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
P F+ K + +V+D S + I W ++GES VV + F + +L + FKH+NF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 129 YGFRKI-----------DTDRWEFANE 144
YG+ K+ + RWEF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|4IHC|A Chain A, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|B Chain B, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|C Chain C, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|D Chain D, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|E Chain E, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|F Chain F, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|G Chain G, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|H Chain H, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
Length = 440
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 122 FVR-QLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPFSEAEK 180
+VR Q+ YG TD + R KNI+ ++SP+S+ G Y P EA
Sbjct: 173 YVRCQMGMYG--GAGTDDLKLIATQLARA-----KNIQPKRSPRSKTPGIYFDP--EAYA 223
Query: 181 SGVQGDIEQLRKERGMLMQEVVELHQQ 207
V E LR + G ++ + ++H++
Sbjct: 224 KSVPRLFEHLRNKLGFGIEFIHDVHER 250
>pdb|3T6C|A Chain A, Crystal Structure Of An Enolase From Pantoea Ananatis (Efi
Target Efi- 501676) With Bound D-Gluconate And Mg
pdb|3T6C|B Chain B, Crystal Structure Of An Enolase From Pantoea Ananatis (Efi
Target Efi- 501676) With Bound D-Gluconate And Mg
Length = 440
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 122 FVR-QLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPFSEAEK 180
++R Q+ YG D R AN + KNI+ ++SP+++ G Y P EA
Sbjct: 173 YIRCQMGMYGGAGTDDLRL-IANRMVKA------KNIQPKRSPRTKAPGIYFDP--EAYA 223
Query: 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLL 240
+ + LR + G V LH H + IN IH A+ + + FL +
Sbjct: 224 KSIPRLFDHLRNKLGF---SVELLHDAHE----RITPINA-IHMAKALEPYQLFFLEDPV 275
Query: 241 --QNPAFLARLKQK 252
+N +L L+Q+
Sbjct: 276 APENTEWLKMLRQQ 289
>pdb|1H3O|A Chain A, Crystal Structure Of The Human Taf4-Taf12
(Tafii135-Tafii20) Complex
pdb|1H3O|C Chain C, Crystal Structure Of The Human Taf4-Taf12
(Tafii135-Tafii20) Complex
Length = 75
Score = 28.5 bits (62), Expect = 8.5, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 197 LMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQG 256
L + ++E+ ++H T H + ++ HA +QR + +V +++ Q F + + EQ
Sbjct: 8 LQRRILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQA 67
Query: 257 EIDSSRMK 264
+++K
Sbjct: 68 SDVRAQLK 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,035,259
Number of Sequences: 62578
Number of extensions: 632566
Number of successful extensions: 955
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 14
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)