Query 046676
Match_columns 487
No_of_seqs 291 out of 1014
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:20:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 9.7E-44 2.1E-48 355.8 12.0 187 67-253 11-209 (304)
2 smart00415 HSF heat shock fact 100.0 9.7E-34 2.1E-38 245.3 7.7 94 67-160 1-105 (105)
3 PF00447 HSF_DNA-bind: HSF-typ 100.0 9.3E-34 2E-38 243.5 5.6 93 70-162 1-102 (103)
4 COG5169 HSF1 Heat shock transc 100.0 7.4E-32 1.6E-36 269.4 6.5 99 66-164 8-116 (282)
5 PF00178 Ets: Ets-domain; Int 94.5 0.025 5.3E-07 48.3 2.3 71 71-141 4-80 (85)
6 KOG3806 Predicted transcriptio 91.9 0.75 1.6E-05 44.4 8.1 78 65-142 65-148 (177)
7 smart00413 ETS erythroblast tr 91.4 0.31 6.8E-06 42.1 4.5 69 73-141 6-80 (87)
8 PF03310 Cauli_DNA-bind: Cauli 87.0 1.7 3.8E-05 39.7 6.1 61 196-258 3-63 (121)
9 COG3074 Uncharacterized protei 83.9 6.3 0.00014 33.1 7.4 54 182-238 22-75 (79)
10 PF06005 DUF904: Protein of un 82.5 8.5 0.00018 32.1 7.8 40 183-222 23-62 (72)
11 PF11932 DUF3450: Protein of u 80.3 9.3 0.0002 38.0 8.7 62 180-241 51-112 (251)
12 PF12325 TMF_TATA_bd: TATA ele 79.4 11 0.00025 34.2 8.2 59 178-236 30-91 (120)
13 PF10473 CENP-F_leu_zip: Leuci 76.1 17 0.00037 34.0 8.5 62 180-241 54-115 (140)
14 PRK15422 septal ring assembly 74.0 18 0.00038 31.0 7.3 38 182-219 22-59 (79)
15 PF10779 XhlA: Haemolysin XhlA 72.8 34 0.00074 27.9 8.6 56 183-238 4-59 (71)
16 TIGR02449 conserved hypothetic 72.7 23 0.0005 29.2 7.5 38 186-223 15-52 (65)
17 PF10168 Nup88: Nuclear pore c 70.2 18 0.0004 41.8 8.7 61 181-241 561-621 (717)
18 PF04340 DUF484: Protein of un 70.0 26 0.00056 34.3 8.7 75 142-243 17-91 (225)
19 PF10224 DUF2205: Predicted co 69.2 50 0.0011 28.3 9.0 57 186-242 9-66 (80)
20 TIGR03752 conj_TIGR03752 integ 67.4 25 0.00055 38.9 8.7 37 181-217 69-105 (472)
21 TIGR02449 conserved hypothetic 63.0 73 0.0016 26.3 8.5 58 182-239 4-61 (65)
22 PF02183 HALZ: Homeobox associ 62.3 31 0.00067 26.4 5.9 40 183-222 3-42 (45)
23 TIGR00219 mreC rod shape-deter 61.9 22 0.00048 36.5 6.7 38 186-223 67-104 (283)
24 TIGR02894 DNA_bind_RsfA transc 60.5 54 0.0012 31.6 8.4 50 188-237 100-149 (161)
25 PF04111 APG6: Autophagy prote 59.5 39 0.00085 35.2 8.1 48 180-227 45-92 (314)
26 KOG3863 bZIP transcription fac 59.1 21 0.00046 40.5 6.4 71 144-218 479-551 (604)
27 PF11932 DUF3450: Protein of u 57.5 58 0.0013 32.4 8.6 37 183-219 61-97 (251)
28 KOG4460 Nuclear pore complex, 56.3 48 0.001 37.6 8.3 58 186-243 589-646 (741)
29 PF12329 TMF_DNA_bd: TATA elem 56.2 81 0.0018 26.3 7.9 55 182-236 16-70 (74)
30 PF10473 CENP-F_leu_zip: Leuci 55.9 81 0.0017 29.6 8.7 46 182-227 70-115 (140)
31 PF06005 DUF904: Protein of un 55.5 1.2E+02 0.0027 25.3 9.2 34 183-216 9-42 (72)
32 PRK10803 tol-pal system protei 54.7 64 0.0014 32.7 8.5 43 196-238 58-100 (263)
33 PF08581 Tup_N: Tup N-terminal 53.3 1.2E+02 0.0025 25.9 8.5 47 187-233 6-59 (79)
34 PRK15396 murein lipoprotein; P 51.5 56 0.0012 27.8 6.3 51 173-223 20-70 (78)
35 KOG4196 bZIP transcription fac 48.5 69 0.0015 30.0 6.8 44 188-238 77-120 (135)
36 PF04728 LPP: Lipoprotein leuc 48.5 1E+02 0.0022 24.9 6.9 42 182-223 7-48 (56)
37 TIGR02894 DNA_bind_RsfA transc 47.6 62 0.0013 31.2 6.6 36 182-217 108-143 (161)
38 PRK11637 AmiB activator; Provi 47.4 1E+02 0.0022 33.1 9.0 39 186-224 76-114 (428)
39 PRK10963 hypothetical protein; 47.4 1.1E+02 0.0024 30.2 8.7 18 142-159 14-31 (223)
40 PF04201 TPD52: Tumour protein 46.7 55 0.0012 31.5 6.2 39 184-222 28-66 (162)
41 KOG4360 Uncharacterized coiled 45.9 60 0.0013 36.5 7.1 56 184-239 225-280 (596)
42 PRK13182 racA polar chromosome 45.0 1E+02 0.0022 29.8 7.8 50 182-231 82-143 (175)
43 PRK11637 AmiB activator; Provi 44.9 1E+02 0.0022 33.0 8.7 44 181-224 78-121 (428)
44 PRK14160 heat shock protein Gr 44.9 1.4E+02 0.0031 29.7 9.0 61 181-241 57-119 (211)
45 PF10211 Ax_dynein_light: Axon 44.8 1E+02 0.0022 29.9 7.9 32 180-211 122-153 (189)
46 PRK06800 fliH flagellar assemb 44.7 1E+02 0.0022 30.6 7.7 32 182-213 35-66 (228)
47 PF03904 DUF334: Domain of unk 44.5 1.4E+02 0.0031 30.2 8.9 57 185-241 43-107 (230)
48 PRK14148 heat shock protein Gr 44.0 1.7E+02 0.0036 28.9 9.2 62 180-241 35-98 (195)
49 PF07407 Seadorna_VP6: Seadorn 42.5 84 0.0018 33.7 7.2 31 179-209 33-63 (420)
50 PRK00888 ftsB cell division pr 42.3 60 0.0013 28.7 5.4 33 186-218 28-60 (105)
51 COG1579 Zn-ribbon protein, pos 42.2 90 0.002 31.8 7.2 23 218-240 94-116 (239)
52 PF09726 Macoilin: Transmembra 41.8 87 0.0019 36.4 7.9 27 181-207 421-447 (697)
53 PRK09973 putative outer membra 41.5 91 0.002 27.1 6.1 53 173-225 19-71 (85)
54 COG1579 Zn-ribbon protein, pos 41.2 84 0.0018 32.0 6.9 51 177-227 88-138 (239)
55 PRK09039 hypothetical protein; 41.2 1.4E+02 0.0031 31.5 8.8 40 185-224 123-162 (343)
56 KOG4010 Coiled-coil protein TP 41.1 73 0.0016 31.6 6.1 39 184-222 43-81 (208)
57 PRK14143 heat shock protein Gr 40.8 1.8E+02 0.004 29.5 9.2 43 183-225 65-107 (238)
58 PF11853 DUF3373: Protein of u 40.2 26 0.00056 39.0 3.3 24 185-209 25-48 (489)
59 PF04420 CHD5: CHD5-like prote 40.1 1.2E+02 0.0027 28.5 7.5 39 202-240 69-107 (161)
60 PF08826 DMPK_coil: DMPK coile 39.9 1.4E+02 0.003 24.4 6.6 41 182-222 15-55 (61)
61 PF10458 Val_tRNA-synt_C: Valy 39.6 1.8E+02 0.0039 23.3 7.3 26 183-208 2-27 (66)
62 PRK10884 SH3 domain-containing 39.2 1.5E+02 0.0033 29.3 8.2 29 129-157 65-95 (206)
63 PF14282 FlxA: FlxA-like prote 39.2 1.5E+02 0.0033 26.1 7.4 24 183-206 17-40 (106)
64 PF04880 NUDE_C: NUDE protein, 38.4 17 0.00038 34.9 1.5 23 193-215 25-47 (166)
65 PF11559 ADIP: Afadin- and alp 38.3 2.2E+02 0.0049 26.0 8.7 11 124-134 9-19 (151)
66 PF07200 Mod_r: Modifier of ru 37.6 1.5E+02 0.0033 27.0 7.5 46 186-231 42-87 (150)
67 PF03127 GAT: GAT domain; Int 36.7 1.6E+02 0.0034 25.4 7.0 69 184-254 10-78 (100)
68 PF08317 Spc7: Spc7 kinetochor 36.5 2E+02 0.0043 29.9 9.0 42 186-227 210-251 (325)
69 PF02403 Seryl_tRNA_N: Seryl-t 36.5 1.7E+02 0.0036 25.2 7.2 54 179-232 37-93 (108)
70 COG1730 GIM5 Predicted prefold 36.2 1.8E+02 0.0039 27.5 7.7 46 183-228 92-137 (145)
71 COG4942 Membrane-bound metallo 36.2 1.6E+02 0.0035 32.3 8.5 45 181-225 62-106 (420)
72 PF13747 DUF4164: Domain of un 35.9 2E+02 0.0044 24.8 7.5 27 182-208 36-62 (89)
73 PF12718 Tropomyosin_1: Tropom 35.9 1.5E+02 0.0032 27.6 7.2 25 184-208 34-58 (143)
74 smart00338 BRLZ basic region l 35.7 89 0.0019 24.7 5.0 25 183-207 31-55 (65)
75 PF07106 TBPIP: Tat binding pr 35.5 1.2E+02 0.0025 28.4 6.5 30 180-209 74-103 (169)
76 PRK14158 heat shock protein Gr 35.4 2.8E+02 0.006 27.4 9.2 44 182-225 37-80 (194)
77 PRK14139 heat shock protein Gr 35.3 2.4E+02 0.0052 27.6 8.7 44 183-226 30-73 (185)
78 PF08781 DP: Transcription fac 35.3 1.6E+02 0.0034 27.9 7.2 22 186-207 2-23 (142)
79 PF10267 Tmemb_cc2: Predicted 35.1 1.3E+02 0.0028 32.8 7.5 17 210-226 302-318 (395)
80 PRK13922 rod shape-determining 35.0 1E+02 0.0023 30.9 6.5 24 186-209 70-93 (276)
81 PHA02562 46 endonuclease subun 34.3 2.1E+02 0.0046 31.2 9.2 20 231-250 403-422 (562)
82 TIGR00414 serS seryl-tRNA synt 34.2 1.6E+02 0.0034 31.9 8.1 88 145-234 5-97 (418)
83 PF01519 DUF16: Protein of unk 34.2 1.4E+02 0.0031 26.8 6.3 33 197-229 65-97 (102)
84 PF07407 Seadorna_VP6: Seadorn 33.5 1.8E+02 0.0039 31.3 8.0 48 185-232 32-81 (420)
85 PF04156 IncA: IncA protein; 33.1 3E+02 0.0064 25.9 8.9 60 181-240 91-150 (191)
86 PF13874 Nup54: Nucleoporin co 33.0 2.5E+02 0.0054 25.8 8.1 42 186-227 45-86 (141)
87 PF04849 HAP1_N: HAP1 N-termin 32.3 2.4E+02 0.0051 29.9 8.6 56 188-243 230-285 (306)
88 PRK14163 heat shock protein Gr 32.0 2.9E+02 0.0062 27.8 8.8 58 184-241 39-98 (214)
89 PRK14154 heat shock protein Gr 31.9 2.6E+02 0.0056 27.9 8.5 39 186-224 53-91 (208)
90 KOG2264 Exostosin EXT1L [Signa 31.6 88 0.0019 35.8 5.6 38 187-224 81-118 (907)
91 PF07676 PD40: WD40-like Beta 31.3 21 0.00045 25.0 0.6 24 77-100 3-26 (39)
92 PF07106 TBPIP: Tat binding pr 31.3 1.9E+02 0.0042 27.0 7.2 52 179-230 80-133 (169)
93 PRK15422 septal ring assembly 31.0 3.5E+02 0.0076 23.4 8.8 33 183-215 9-41 (79)
94 PRK14162 heat shock protein Gr 30.7 3.2E+02 0.007 26.9 8.8 42 183-224 37-78 (194)
95 PRK05431 seryl-tRNA synthetase 30.6 1.7E+02 0.0037 31.8 7.6 87 145-235 5-95 (425)
96 PF04102 SlyX: SlyX; InterPro 30.5 1.6E+02 0.0035 24.0 5.7 25 199-223 25-49 (69)
97 PF10226 DUF2216: Uncharacteri 30.2 2.1E+02 0.0045 28.5 7.3 31 194-224 39-69 (195)
98 TIGR03752 conj_TIGR03752 integ 30.1 2.4E+02 0.0052 31.5 8.6 42 182-223 63-104 (472)
99 PRK14145 heat shock protein Gr 30.0 3.8E+02 0.0083 26.5 9.2 44 182-225 42-85 (196)
100 PRK14155 heat shock protein Gr 29.8 2.3E+02 0.005 28.2 7.7 37 188-224 16-52 (208)
101 KOG4005 Transcription factor X 29.8 2.4E+02 0.0051 29.2 7.8 31 182-212 94-124 (292)
102 PRK14161 heat shock protein Gr 29.6 3.2E+02 0.007 26.5 8.6 42 184-225 18-59 (178)
103 COG1422 Predicted membrane pro 29.4 2E+02 0.0044 28.7 7.2 21 186-206 73-93 (201)
104 PF12718 Tropomyosin_1: Tropom 29.3 2.2E+02 0.0047 26.5 7.1 44 183-226 19-62 (143)
105 KOG0977 Nuclear envelope prote 28.9 3.3E+02 0.0071 31.1 9.5 45 182-226 166-217 (546)
106 PF09727 CortBP2: Cortactin-bi 28.5 2.9E+02 0.0063 27.4 8.1 47 191-237 140-186 (192)
107 PF01025 GrpE: GrpE; InterPro 28.4 1E+02 0.0022 28.4 4.8 21 182-202 15-35 (165)
108 PF04977 DivIC: Septum formati 28.2 1.7E+02 0.0038 23.2 5.6 11 241-251 52-62 (80)
109 COG3074 Uncharacterized protei 28.1 3.8E+02 0.0082 22.9 7.8 30 187-216 13-42 (79)
110 PF02183 HALZ: Homeobox associ 28.0 1.3E+02 0.0027 23.0 4.3 28 183-210 10-37 (45)
111 PF14854 LURAP: Leucine rich a 27.9 1.2E+02 0.0025 28.1 4.8 34 192-225 22-55 (121)
112 PRK10803 tol-pal system protei 27.9 2.3E+02 0.005 28.7 7.6 48 181-228 36-83 (263)
113 PRK03947 prefoldin subunit alp 27.8 2.2E+02 0.0047 25.7 6.7 45 183-227 92-136 (140)
114 PRK08032 fliD flagellar cappin 27.7 1.8E+02 0.004 31.8 7.3 25 197-221 411-435 (462)
115 PF06156 DUF972: Protein of un 27.4 2.3E+02 0.005 25.3 6.6 6 218-223 48-53 (107)
116 PRK14140 heat shock protein Gr 27.4 4.1E+02 0.009 26.1 8.9 41 185-225 37-77 (191)
117 COG1345 FliD Flagellar capping 27.2 2.5E+02 0.0055 31.3 8.3 56 181-239 425-480 (483)
118 PRK14153 heat shock protein Gr 27.2 2.7E+02 0.0058 27.5 7.6 39 186-224 34-72 (194)
119 PF03961 DUF342: Protein of un 27.0 2.3E+02 0.0049 30.8 7.8 12 39-50 97-108 (451)
120 PF09744 Jnk-SapK_ap_N: JNK_SA 27.0 2.1E+02 0.0046 27.3 6.7 9 225-233 136-144 (158)
121 COG1382 GimC Prefoldin, chaper 27.0 2.1E+02 0.0045 26.4 6.3 36 187-222 72-107 (119)
122 smart00787 Spc7 Spc7 kinetocho 26.9 3.7E+02 0.008 28.3 9.0 39 187-225 206-244 (312)
123 PF07798 DUF1640: Protein of u 26.4 3.1E+02 0.0066 26.1 7.7 15 121-135 6-20 (177)
124 COG3883 Uncharacterized protei 26.3 3.6E+02 0.0077 28.0 8.6 44 180-223 47-90 (265)
125 PF02388 FemAB: FemAB family; 26.2 2.5E+02 0.0053 30.2 7.8 56 183-238 240-298 (406)
126 PF12329 TMF_DNA_bd: TATA elem 26.1 1.8E+02 0.0039 24.2 5.4 32 196-227 16-47 (74)
127 KOG0982 Centrosomal protein Nu 25.8 9.6E+02 0.021 26.9 12.0 216 8-234 13-278 (502)
128 PRK05892 nucleoside diphosphat 25.7 1.4E+02 0.0031 28.1 5.3 29 175-203 8-36 (158)
129 COG1730 GIM5 Predicted prefold 25.1 2.1E+02 0.0045 27.1 6.2 47 177-223 93-139 (145)
130 PRK14147 heat shock protein Gr 25.0 3.9E+02 0.0085 25.7 8.2 34 191-224 24-57 (172)
131 PF08317 Spc7: Spc7 kinetochor 24.9 3.8E+02 0.0082 27.9 8.7 9 119-127 127-135 (325)
132 PF06419 COG6: Conserved oligo 24.8 4.2E+02 0.009 30.3 9.6 62 182-243 49-110 (618)
133 PRK14144 heat shock protein Gr 24.7 4.5E+02 0.0097 26.1 8.7 41 185-225 45-85 (199)
134 PRK13729 conjugal transfer pil 24.6 1.3E+02 0.0029 33.5 5.5 46 177-222 75-120 (475)
135 PF10186 Atg14: UV radiation r 24.5 4.7E+02 0.01 25.7 9.0 6 313-318 200-205 (302)
136 KOG4196 bZIP transcription fac 24.3 1.2E+02 0.0027 28.3 4.4 33 177-209 80-112 (135)
137 PF10805 DUF2730: Protein of u 24.0 3.6E+02 0.0079 23.7 7.2 7 217-223 83-89 (106)
138 PF04880 NUDE_C: NUDE protein, 24.0 22 0.00048 34.2 -0.4 6 196-201 18-23 (166)
139 PLN02320 seryl-tRNA synthetase 24.0 2.6E+02 0.0056 31.5 7.7 88 143-234 68-158 (502)
140 PF00038 Filament: Intermediat 24.0 5E+02 0.011 26.2 9.2 43 182-224 213-255 (312)
141 PF08614 ATG16: Autophagy prot 23.5 4.1E+02 0.009 25.5 8.1 16 187-202 118-133 (194)
142 PF04111 APG6: Autophagy prote 23.4 5.1E+02 0.011 27.1 9.3 25 183-207 62-86 (314)
143 PRK09039 hypothetical protein; 23.3 4.1E+02 0.0089 28.1 8.7 19 186-204 145-163 (343)
144 PLN02678 seryl-tRNA synthetase 23.2 2.8E+02 0.0061 30.6 7.7 60 178-237 40-102 (448)
145 KOG2751 Beclin-like protein [S 23.2 5.1E+02 0.011 28.8 9.4 68 182-249 180-251 (447)
146 PF11414 Suppressor_APC: Adeno 23.0 3.1E+02 0.0067 23.6 6.4 38 185-222 7-44 (84)
147 PF10226 DUF2216: Uncharacteri 22.9 4.4E+02 0.0096 26.2 8.1 19 186-204 56-74 (195)
148 COG3159 Uncharacterized protei 22.8 3.2E+02 0.0069 27.7 7.2 54 140-206 13-66 (218)
149 KOG4460 Nuclear pore complex, 22.6 8.1E+02 0.017 28.4 10.9 12 11-22 327-338 (741)
150 KOG0996 Structural maintenance 22.3 2.4E+02 0.0053 34.9 7.3 15 409-423 748-762 (1293)
151 PF04325 DUF465: Protein of un 22.2 1.4E+02 0.003 22.7 3.7 22 185-206 27-48 (49)
152 smart00338 BRLZ basic region l 22.0 3.6E+02 0.0078 21.2 6.2 29 186-214 27-55 (65)
153 KOG3850 Predicted membrane pro 21.8 3.8E+02 0.0083 29.5 8.0 17 214-230 354-370 (455)
154 KOG1103 Predicted coiled-coil 21.6 2.6E+02 0.0057 30.4 6.8 46 183-228 243-288 (561)
155 PRK14151 heat shock protein Gr 21.5 5.2E+02 0.011 25.0 8.3 39 187-225 22-60 (176)
156 PF12308 Noelin-1: Neurogenesi 21.4 2.8E+02 0.006 25.0 5.8 48 185-232 47-94 (101)
157 PRK06664 fliD flagellar hook-a 21.4 3.5E+02 0.0076 31.4 8.2 15 210-224 611-625 (661)
158 PF07888 CALCOCO1: Calcium bin 21.2 3.8E+02 0.0082 30.6 8.2 10 103-112 75-84 (546)
159 cd00632 Prefoldin_beta Prefold 21.1 3.4E+02 0.0075 23.4 6.4 40 186-225 64-103 (105)
160 PF12709 Kinetocho_Slk19: Cent 21.0 3.1E+02 0.0067 24.0 5.9 40 183-222 47-86 (87)
161 KOG4057 Uncharacterized conser 20.7 6.2E+02 0.013 24.5 8.4 59 182-240 16-74 (180)
162 smart00503 SynN Syntaxin N-ter 20.6 5.2E+02 0.011 21.8 7.5 28 184-211 7-34 (117)
163 PRK13169 DNA replication intia 20.6 3.7E+02 0.008 24.3 6.6 20 188-207 11-30 (110)
164 PF06785 UPF0242: Uncharacteri 20.3 5.3E+02 0.012 28.0 8.6 42 182-223 131-172 (401)
165 KOG0977 Nuclear envelope prote 20.2 4.3E+02 0.0094 30.1 8.4 44 180-223 150-193 (546)
166 COG2433 Uncharacterized conser 20.1 7.2E+02 0.016 28.9 10.1 42 182-223 426-467 (652)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=9.7e-44 Score=355.77 Aligned_cols=187 Identities=44% Similarity=0.791 Sum_probs=170.0
Q ss_pred CCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeec--CCceeEEcc
Q 046676 67 PIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKID--TDRWEFANE 144 (487)
Q Consensus 67 ~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~--~d~~eF~h~ 144 (487)
.+++|+.|||.||+||++++||+|+++|++|||||+.+|++.+||+||||+||+|||||||+||||||+ +++|+|+|+
T Consensus 11 ~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~ 90 (304)
T KOG0627|consen 11 GPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNP 90 (304)
T ss_pred CCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecCh
Confidence 689999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred ccccCchhhhccccccCCCCccccC--CCCC--------CCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046676 145 AFQRGRRHLLKNIRRRKSPQSQQIG--TYIG--------PFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASH 214 (487)
Q Consensus 145 ~F~Rg~p~LL~~IkRkk~~~s~q~~--s~~g--------~~~e~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~q 214 (487)
+|+||+++||++|+||++.+..... .... .........++.+++.|++++..|++|+.+|++++..+.++
T Consensus 91 ~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~ 170 (304)
T KOG0627|consen 91 CFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRAT 170 (304)
T ss_pred hHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999988654421 1000 11223456788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhhh
Q 046676 215 MEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKK 253 (487)
Q Consensus 215 mq~lnqRLq~~EqrQqQMlsFLakvvqnP~fl~ql~~~~ 253 (487)
++.+.+++...+++|++|+.|+++++++|.|+.++.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 209 (304)
T KOG0627|consen 171 IQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ 209 (304)
T ss_pred HHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence 999999999999999999999999999999999998643
No 2
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=9.7e-34 Score=245.29 Aligned_cols=94 Identities=64% Similarity=1.169 Sum_probs=90.8
Q ss_pred CCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeecC----------
Q 046676 67 PIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDT---------- 136 (487)
Q Consensus 67 ~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~~---------- 136 (487)
++|.|+.|||+||+|+++++||+|+++|++|+|+|++.|.+.|||+||+|+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 3688999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -CceeEEccccccCchhhhcccccc
Q 046676 137 -DRWEFANEAFQRGRRHLLKNIRRR 160 (487)
Q Consensus 137 -d~~eF~h~~F~Rg~p~LL~~IkRk 160 (487)
+.|+|+|++|+||+++||.+|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 789999999999999999999996
No 3
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=9.3e-34 Score=243.50 Aligned_cols=93 Identities=51% Similarity=1.001 Sum_probs=81.6
Q ss_pred hhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeecCC---------cee
Q 046676 70 PFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTD---------RWE 140 (487)
Q Consensus 70 ~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~~d---------~~e 140 (487)
.||.|||+||+|++++++|+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+... .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 59999999999999999999999999999999999999999999999999999999999999999753 399
Q ss_pred EEccccccCchhhhccccccCC
Q 046676 141 FANEAFQRGRRHLLKNIRRRKS 162 (487)
Q Consensus 141 F~h~~F~Rg~p~LL~~IkRkk~ 162 (487)
|+|++|+||++++|..|+||++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999874
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.97 E-value=7.4e-32 Score=269.39 Aligned_cols=99 Identities=46% Similarity=0.918 Sum_probs=92.6
Q ss_pred CCCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeec-C--------
Q 046676 66 NPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKID-T-------- 136 (487)
Q Consensus 66 ~~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~-~-------- 136 (487)
.++..|+.|||.||+++++..+|+|+++|++|||+|++.|.+.|||+||||+||+|||||||+||||||. .
T Consensus 8 ~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n 87 (282)
T COG5169 8 SQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYN 87 (282)
T ss_pred CchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccc
Confidence 3467899999999999999999999999999999999999999999999999999999999999999997 2
Q ss_pred -CceeEEccccccCchhhhccccccCCCC
Q 046676 137 -DRWEFANEAFQRGRRHLLKNIRRRKSPQ 164 (487)
Q Consensus 137 -d~~eF~h~~F~Rg~p~LL~~IkRkk~~~ 164 (487)
..|+|.|++|++|..++|++|+|+|...
T Consensus 88 ~~~wef~~~nF~~g~~~~L~~i~r~ka~~ 116 (282)
T COG5169 88 ENVWEFGNKNFQLGMIELLKKIKRKKAPS 116 (282)
T ss_pred hhheeecCchhccCcHHHHHHhhhhhcCc
Confidence 3499999999999999999999977653
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=94.49 E-value=0.025 Score=48.35 Aligned_cols=71 Identities=27% Similarity=0.441 Sum_probs=51.4
Q ss_pred hHHHHHHhhcCCCCCCeeEEcC-CCCeEEEeCCchhhhhhcC-CCCCCCChhhHHhhhccccc----eeecCCceeE
Q 046676 71 FLAKTFDLVDDTSLDPIISWGS-TGESFVVWDPLEFSRLILP-RNFKHNNFSSFVRQLNTYGF----RKIDTDRWEF 141 (487)
Q Consensus 71 Fl~KLy~mVedp~~~~IIsWs~-~G~sFvI~d~~~F~k~VLP-kyFKh~nfsSFvRQLN~YGF----rKv~~d~~eF 141 (487)
+..-|.++|.|+++.++|+|.. .+..|.|.|++++++.--- +--..-+|.++-|-|..|.= .||...+..|
T Consensus 4 Lw~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy~k~il~kv~g~r~~Y 80 (85)
T PF00178_consen 4 LWQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYYKKGILEKVKGQRLVY 80 (85)
T ss_dssp HHHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHHHTTSEEEETTSTTEE
T ss_pred HHHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHhhCCeEEecCCcEEEE
Confidence 3455779999999999999999 9999999999999974211 12234578999999887632 4455555444
No 6
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=91.90 E-value=0.75 Score=44.45 Aligned_cols=78 Identities=27% Similarity=0.453 Sum_probs=56.3
Q ss_pred CCCCChhHHHHHHhhcCCCCCCeeEEcC-CCCeEEEeCCchhhhhhcCCCC-CCCChhhHHhhhccc---c-ceeecCCc
Q 046676 65 GNPIPPFLAKTFDLVDDTSLDPIISWGS-TGESFVVWDPLEFSRLILPRNF-KHNNFSSFVRQLNTY---G-FRKIDTDR 138 (487)
Q Consensus 65 ~~~~p~Fl~KLy~mVedp~~~~IIsWs~-~G~sFvI~d~~~F~k~VLPkyF-Kh~nfsSFvRQLN~Y---G-FrKv~~d~ 138 (487)
.++.-....-|.++|+|+++.++|+|.. +|--|.+.|+++.++.---+== ..-||.-.-|-|..| + -+||...+
T Consensus 65 ~sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyyY~kni~~Kv~Gkr 144 (177)
T KOG3806|consen 65 GSGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYYYDKNILKKVPGKR 144 (177)
T ss_pred CCchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCceeecCCce
Confidence 3444456667779999999999999998 6879999999999986433322 256788888888776 1 25555555
Q ss_pred eeEE
Q 046676 139 WEFA 142 (487)
Q Consensus 139 ~eF~ 142 (487)
..|.
T Consensus 145 ~~Yk 148 (177)
T KOG3806|consen 145 FVYK 148 (177)
T ss_pred EEEE
Confidence 5554
No 7
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=91.40 E-value=0.31 Score=42.09 Aligned_cols=69 Identities=32% Similarity=0.470 Sum_probs=49.5
Q ss_pred HHHHHhhcCCCCCCeeEEcC-CCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhcccc----ceeecCCceeE
Q 046676 73 AKTFDLVDDTSLDPIISWGS-TGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYG----FRKIDTDRWEF 141 (487)
Q Consensus 73 ~KLy~mVedp~~~~IIsWs~-~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YG----FrKv~~d~~eF 141 (487)
.-|.++|.|+++.++|+|.. ++.-|.+.|+++.++.---+ -=..-||..+-|-|..|- .+||...+.+|
T Consensus 6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy~~~il~Kv~g~rl~Y 80 (87)
T smart00413 6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYYKKNILRKVPGKRLVY 80 (87)
T ss_pred HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCcEEecCCceEEE
Confidence 34679999999999999998 68899999999888742221 113457888889887773 24454444444
No 8
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=87.01 E-value=1.7 Score=39.67 Aligned_cols=61 Identities=23% Similarity=0.419 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhhhhhccc
Q 046676 196 MLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQGEI 258 (487)
Q Consensus 196 ~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvqnP~fl~ql~~~~~~~~i 258 (487)
..+.||..+.+.++.+...+.++.++++..++.+.+|.++-|+++++ +...+.+-.|.+++
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD--isdkIdkCeC~Kel 63 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD--ISDKIDKCECNKEL 63 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH--HHHHHHT-TTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH--HHHHHHhchhhHHH
Confidence 45678888888888888899999999999998899999999999998 44444444445554
No 9
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.90 E-value=6.3 Score=33.14 Aligned_cols=54 Identities=24% Similarity=0.331 Sum_probs=35.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAK 238 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLak 238 (487)
-|.-||+.||.+++.|.+|+..++.+...+..+-+++.+.. .-||..+-+.|-+
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~---~~WQerlrsLLGk 75 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ---NGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 35678999999999999999888777665544444333222 2356666665554
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.52 E-value=8.5 Score=32.11 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRI 222 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRL 222 (487)
|..|++.|+.++..|..+...|+++...+.+.......||
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444444444444443333333333333
No 11
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.30 E-value=9.3 Score=38.02 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=37.7
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046676 180 KSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQ 241 (487)
Q Consensus 180 ~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvq 241 (487)
+..+..+++.|+++...|.....+++.+......++..+++++..++...+.|..++..++.
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555666666777777777766666666666654
No 12
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.44 E-value=11 Score=34.23 Aligned_cols=59 Identities=24% Similarity=0.456 Sum_probs=39.9
Q ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 178 AEKSGVQGDIEQLRKERGMLMQEVVELHQQHR---GTASHMEAINQRIHAAEQRQKQMVSFL 236 (487)
Q Consensus 178 ~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~---~~~~qmq~lnqRLq~~EqrQqQMlsFL 236 (487)
.+...+..++.+|..++..+.+||++|-.+.. ....++..++..+..++.|-..++..|
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777888888888888888888877663 334455666666666666665555444
No 13
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=76.14 E-value=17 Score=34.05 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=47.4
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046676 180 KSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQ 241 (487)
Q Consensus 180 ~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvq 241 (487)
...|..+++.|..+++.|..||..++.+...+.+.++.++.|+..++..+..+.++|..+=+
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34566777777777778888888888888888888888888888888887777776665533
No 14
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=73.96 E-value=18 Score=31.01 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=23.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAIN 219 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~ln 219 (487)
-|.-||+.||.++..|.+|+..++.....+.++-+++.
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk 59 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35567788888888887777665555444444433333
No 15
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=72.77 E-value=34 Score=27.95 Aligned_cols=56 Identities=5% Similarity=0.202 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAK 238 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLak 238 (487)
+.+++.+++.....+...+..+.+.....+.++..++++|..++..++=+..++..
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiG 59 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777888888888888888888899999999888877765554443
No 16
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=72.74 E-value=23 Score=29.22 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
..++|+.++..|.+++..++.+...+..++..-..|+.
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556555555555555554444444444444443
No 17
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=70.17 E-value=18 Score=41.83 Aligned_cols=61 Identities=18% Similarity=0.415 Sum_probs=43.9
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQ 241 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvq 241 (487)
..++..+..|+.++..-..+|.+++++...+....+.+.+|+..+.++|++++.=+.++++
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667777777777777788777777777778888998888888887765554444
No 18
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=70.02 E-value=26 Score=34.28 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=23.8
Q ss_pred EccccccCchhhhccccccCCCCccccCCCCCCCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046676 142 ANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQR 221 (487)
Q Consensus 142 ~h~~F~Rg~p~LL~~IkRkk~~~s~q~~s~~g~~~e~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqR 221 (487)
.||.|...+++||..|+=.-+ .+. ..+-.+..++.||.++..| +.++..+.+.
T Consensus 17 ~~PdFf~~~~~ll~~l~~ph~-----~~~--------avSL~erQ~~~LR~~~~~L--------------~~~l~~Li~~ 69 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLPHP-----SGG--------AVSLVERQLERLRERNRQL--------------EEQLEELIEN 69 (225)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCCCC-----CCC--------cccHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 699999999999999875321 110 0111223344444444433 3444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCh
Q 046676 222 IHAAEQRQKQMVSFLAKLLQNP 243 (487)
Q Consensus 222 Lq~~EqrQqQMlsFLakvvqnP 243 (487)
-+.-++.++++..+..+++.-.
T Consensus 70 Ar~Ne~~~~~~~~l~l~LL~a~ 91 (225)
T PF04340_consen 70 ARENEAIFQRLHRLVLALLAAR 91 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 4444555667777777777754
No 19
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=69.23 E-value=50 Score=28.29 Aligned_cols=57 Identities=25% Similarity=0.484 Sum_probs=41.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 046676 186 DIEQLRKE-RGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQN 242 (487)
Q Consensus 186 EIE~LK~e-k~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvqn 242 (487)
+++.+.++ +..|.+++..||.....+.+++..+.+....++.--+-+..|+..+|..
T Consensus 9 d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 9 DIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55655444 7788899999998888888888888777776666555566677776654
No 20
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.45 E-value=25 Score=38.88 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=28.0
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEA 217 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~ 217 (487)
..++.+++.|.++++.|..|..+||++...+.+++++
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3566778888888888888888888887777666643
No 21
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=63.01 E-value=73 Score=26.34 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=38.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKL 239 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakv 239 (487)
.|+..|+.|-.-...|..|-..|++++.....+-..+.++...+..|-..|++=|..+
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3556677776666777777777777777666666667777766666666666655443
No 22
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.29 E-value=31 Score=26.35 Aligned_cols=40 Identities=13% Similarity=0.307 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRI 222 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRL 222 (487)
++.+.+.||.....|..+...|+++...+..++..+..++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666666666666666666655555555555444
No 23
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=61.86 E-value=22 Score=36.48 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
++..|++|+..|.+|+.+|+++++...+.++.-|+||+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr 104 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLR 104 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888888876666555444666666665
No 24
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=60.48 E-value=54 Score=31.57 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 188 EQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLA 237 (487)
Q Consensus 188 E~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLa 237 (487)
..++.++..|..|+.+|+++...+..+.+.+.+++..++.-=+.|+..+-
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666655555555555555554444444444443
No 25
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.53 E-value=39 Score=35.23 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=36.4
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046676 180 KSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQ 227 (487)
Q Consensus 180 ~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eq 227 (487)
...++.|++.|+++...|.+||.+|+++...+..++..+......+++
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888889999998888888888888777666655443
No 26
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=59.06 E-value=21 Score=40.50 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=40.7
Q ss_pred cccccCchhhhccccccCCCCccccCCCCCCCch--hhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 046676 144 EAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPFSE--AEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAI 218 (487)
Q Consensus 144 ~~F~Rg~p~LL~~IkRkk~~~s~q~~s~~g~~~e--~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~l 218 (487)
..|...+..|++.|+||..-+. .+ -+|... .--..|+.||+.|+++++.|..|-..+......+.+++..|
T Consensus 479 ~~lte~QLslIrDIRRRgKNkv---AA-QnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L 551 (604)
T KOG3863|consen 479 YKLTEEQLSLIRDIRRRGKNKV---AA-QNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSEL 551 (604)
T ss_pred cccCHHHHHHhhccccccccch---hc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456668889999999853221 11 011111 11245777888888888877777665555444444444433
No 27
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.53 E-value=58 Score=32.42 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAIN 219 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~ln 219 (487)
+..|++.|+..+..+...+..++++...+..++..+.
T Consensus 61 l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 61 LEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333
No 28
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.26 E-value=48 Score=37.63 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNP 243 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvqnP 243 (487)
-+..|++.+..-.|+|..++++.........-+.+|+..+..+|.-+++-+.++++.+
T Consensus 589 H~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~ 646 (741)
T KOG4460|consen 589 HVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 3444555555555666666666665555555667777777778888888888887754
No 29
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=56.20 E-value=81 Score=26.25 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=37.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFL 236 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFL 236 (487)
.|..|-+.|.+....+..-|.+|+++......++..+..++...+..-..+-.++
T Consensus 16 ~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 16 QLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777777788888887777777777777776666544444433
No 30
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=55.88 E-value=81 Score=29.61 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=19.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQ 227 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eq 227 (487)
.+..++..++.++..|.+++.+.+.+...+......+...|+..|+
T Consensus 70 ~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 70 QLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444444444444444444443333333444444333
No 31
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.47 E-value=1.2e+02 Score=25.27 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHME 216 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq 216 (487)
|+..|..+-.....|..|+.+|+.+......+-.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~ 42 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENE 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4555555555566666666666665444433333
No 32
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=54.69 E-value=64 Score=32.72 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 196 MLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAK 238 (487)
Q Consensus 196 ~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLak 238 (487)
.|.+.|..|+++...+.-+++.++-.|+.+++||+.+..=|-.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777888888888888776544433
No 33
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=53.25 E-value=1.2e+02 Score=25.91 Aligned_cols=47 Identities=26% Similarity=0.366 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHH
Q 046676 187 IEQLRKERGMLMQEVVELHQQHRG-------TASHMEAINQRIHAAEQRQKQMV 233 (487)
Q Consensus 187 IE~LK~ek~~L~qELvkLqQQQ~~-------~~~qmq~lnqRLq~~EqrQqQMl 233 (487)
++.+|.+-..+.+|+..++.+... -.+.|+.+++.|-.+|+.+.+|.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK 59 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665555544433 34455566667777777666664
No 34
>PRK15396 murein lipoprotein; Provisional
Probab=51.50 E-value=56 Score=27.83 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=32.1
Q ss_pred CCCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 173 GPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 173 g~~~e~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
||.+......|..+|+.|+.+...|.+++..++..-+....+-.--|+||.
T Consensus 20 GCAs~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 20 GCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433344556667777777777777777777666666666666677775
No 35
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=48.54 E-value=69 Score=29.98 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 188 EQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAK 238 (487)
Q Consensus 188 E~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLak 238 (487)
+.|.+++..|++||.+|+++...+..++-.+..++ .++.+|...
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~-------e~l~~~~~~ 120 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY-------EALQNSAVS 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhh
Confidence 44566777778888877777665554444444444 466666653
No 36
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.46 E-value=1e+02 Score=24.90 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=28.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
.|..+|..|+.+...|.+++..|+...+....+-.--|+||.
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777766666666666677775
No 37
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.58 E-value=62 Score=31.18 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEA 217 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~ 217 (487)
.++.+++.|+..+..|..|+.+|++++..+....+.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444444433
No 38
>PRK11637 AmiB activator; Provisional
Probab=47.44 E-value=1e+02 Score=33.13 Aligned_cols=39 Identities=8% Similarity=0.163 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHA 224 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~ 224 (487)
+++.|.++...+..++..++++...+..++..++++|..
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444444444433
No 39
>PRK10963 hypothetical protein; Provisional
Probab=47.39 E-value=1.1e+02 Score=30.22 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.7
Q ss_pred EccccccCchhhhccccc
Q 046676 142 ANEAFQRGRRHLLKNIRR 159 (487)
Q Consensus 142 ~h~~F~Rg~p~LL~~IkR 159 (487)
.||.|.-.+++||..|+=
T Consensus 14 ~~PdFf~~h~~Ll~~L~l 31 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRV 31 (223)
T ss_pred HCchHHhhCHHHHHhccC
Confidence 599999999999997765
No 40
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=46.66 E-value=55 Score=31.53 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046676 184 QGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRI 222 (487)
Q Consensus 184 e~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRL 222 (487)
+.|-+.||.+...+..||..|+|-...-+.++..|.++|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456788888888889999999887666666666666655
No 41
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=45.89 E-value=60 Score=36.51 Aligned_cols=56 Identities=18% Similarity=0.372 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 184 QGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKL 239 (487)
Q Consensus 184 e~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakv 239 (487)
..|..++..++..|+.+|++++++.+.+.++-+.+.+.|+.+.++|.+|-.=+..+
T Consensus 225 t~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~El 280 (596)
T KOG4360|consen 225 TKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEEL 280 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555556667788888999998888888888888888988888888875544433
No 42
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=45.00 E-value=1e+02 Score=29.82 Aligned_cols=50 Identities=26% Similarity=0.319 Sum_probs=27.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGT------------ASHMEAINQRIHAAEQRQKQ 231 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~------------~~qmq~lnqRLq~~EqrQqQ 231 (487)
.+...++.|..+...+.+.+.+|++..... ..+|+.|.++|+.+|++-.+
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666555443322 23555666666666665544
No 43
>PRK11637 AmiB activator; Provisional
Probab=44.93 E-value=1e+02 Score=33.02 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=22.6
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHA 224 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~ 224 (487)
..++.+++.+..+...+.++|..++++...+..++..++++|..
T Consensus 78 ~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 78 KKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555444444443
No 44
>PRK14160 heat shock protein GrpE; Provisional
Probab=44.92 E-value=1.4e+02 Score=29.74 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=40.8
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQ--RQKQMVSFLAKLLQ 241 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eq--rQqQMlsFLakvvq 241 (487)
..++.+++.|+.+...|..++..++.+..++...+...+.|...-.. +..-...|+..++.
T Consensus 57 ~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLp 119 (211)
T PRK14160 57 EELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLP 119 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566777788777888888888888888888888888888765322 22233444444443
No 45
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=44.79 E-value=1e+02 Score=29.88 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=19.1
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046676 180 KSGVQGDIEQLRKERGMLMQEVVELHQQHRGT 211 (487)
Q Consensus 180 ~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~ 211 (487)
...+..++..|+.++..|..++..++.+...+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666665554433
No 46
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=44.70 E-value=1e+02 Score=30.64 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=23.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTAS 213 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~ 213 (487)
.+..+.+.|...+..|.+|+..|+++|+.+.+
T Consensus 35 ~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~ 66 (228)
T PRK06800 35 EIQKDHEELLAQQKSLHKELNQLRQEQQKLER 66 (228)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557777888888888888888777765543
No 47
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=44.53 E-value=1.4e+02 Score=30.24 Aligned_cols=57 Identities=12% Similarity=0.364 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhc
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA--------EQRQKQMVSFLAKLLQ 241 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~--------EqrQqQMlsFLakvvq 241 (487)
+|++.|++++..+..++.+++++|...+.+++.+.-.|..+ ++.++..+.+|..-+.
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk 107 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELK 107 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999988888888877766542 3344455555544433
No 48
>PRK14148 heat shock protein GrpE; Provisional
Probab=44.00 E-value=1.7e+02 Score=28.94 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=43.9
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhc
Q 046676 180 KSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQ--KQMVSFLAKLLQ 241 (487)
Q Consensus 180 ~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQ--qQMlsFLakvvq 241 (487)
...++.+++.|+.+...|..++.+++.+...+...++.++.|.+.-.... .-+-.|+..++.
T Consensus 35 ~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLp 98 (195)
T PRK14148 35 ELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLP 98 (195)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456778888888888999999999988888888888888887533322 223345555444
No 49
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=42.46 E-value=84 Score=33.67 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=22.3
Q ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 179 EKSGVQGDIEQLRKERGMLMQEVVELHQQHR 209 (487)
Q Consensus 179 ~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~ 209 (487)
+..+|..|-++||+|++.|..|+.+|+.+..
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456777888888888888888887755443
No 50
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=42.30 E-value=60 Score=28.71 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAI 218 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~l 218 (487)
....++++...+.+|+.++++++..+..++..+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666666655555444433
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=42.21 E-value=90 Score=31.76 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 046676 218 INQRIHAAEQRQKQMVSFLAKLL 240 (487)
Q Consensus 218 lnqRLq~~EqrQqQMlsFLakvv 240 (487)
|+..++..+++...+..=|+.++
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~ 116 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.76 E-value=87 Score=36.37 Aligned_cols=27 Identities=33% Similarity=0.369 Sum_probs=19.9
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQ 207 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQ 207 (487)
..|+.||++||.|.....+.=.+||++
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 468889999998877766665666665
No 53
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=41.55 E-value=91 Score=27.10 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=38.3
Q ss_pred CCCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 173 GPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 173 g~~~e~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
||........|..+|+.|+.+...+.+++..++..-.....+-..-|+||..+
T Consensus 19 GCAs~~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 19 GCVNEQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 44444445567778888888888888888888877777766777778888643
No 54
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.20 E-value=84 Score=31.97 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=36.7
Q ss_pred hhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046676 177 EAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQ 227 (487)
Q Consensus 177 e~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eq 227 (487)
+.....|..|+..+++....|..||..+...+.....++..++.++..++.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888888888888877777777777777666655443
No 55
>PRK09039 hypothetical protein; Validated
Probab=41.18 E-value=1.4e+02 Score=31.50 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHA 224 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~ 224 (487)
.++..++........++..|++|...+..|+..++..|..
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433333333333444444444444444444444433
No 56
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=41.12 E-value=73 Score=31.56 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046676 184 QGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRI 222 (487)
Q Consensus 184 e~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRL 222 (487)
+.|-+.||.+...++.||+.|||-...-+.+...|.++|
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678888888899999999887766566666666555
No 57
>PRK14143 heat shock protein GrpE; Provisional
Probab=40.75 E-value=1.8e+02 Score=29.47 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
...++..|+.+...|.+++.+++.++.++...+..+++|...-
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE 107 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSRE 107 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888888888999999888888888888888888653
No 58
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=40.21 E-value=26 Score=38.99 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHR 209 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~ 209 (487)
.|++.|+ +.+.|.+||.+|++|+.
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 4555555 55566666666666655
No 59
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.13 E-value=1.2e+02 Score=28.47 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=19.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046676 202 VELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLL 240 (487)
Q Consensus 202 vkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvv 240 (487)
.+|+.+......+++.+++.+...+.....++..+..++
T Consensus 69 aKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (161)
T PF04420_consen 69 AKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVL 107 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555556666666555555555555555444443
No 60
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=39.92 E-value=1.4e+02 Score=24.38 Aligned_cols=41 Identities=10% Similarity=0.307 Sum_probs=19.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRI 222 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRL 222 (487)
.+..|+...|..+..+...|.+-..+.+.+..++..+..++
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433
No 61
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=39.56 E-value=1.8e+02 Score=23.31 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQH 208 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ 208 (487)
++.|+++|.++...+..++..++...
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777666554
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.22 E-value=1.5e+02 Score=29.32 Aligned_cols=29 Identities=10% Similarity=0.081 Sum_probs=18.6
Q ss_pred ccceeec--CCceeEEccccccCchhhhccc
Q 046676 129 YGFRKID--TDRWEFANEAFQRGRRHLLKNI 157 (487)
Q Consensus 129 YGFrKv~--~d~~eF~h~~F~Rg~p~LL~~I 157 (487)
.||.+|. .++--|.|..|....|.+-..+
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rl 95 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRTRV 95 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHHHH
Confidence 3677775 3455688888877776654443
No 63
>PF14282 FlxA: FlxA-like protein
Probab=39.17 E-value=1.5e+02 Score=26.07 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQ 206 (487)
....|+.|++....|..+|..|..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 367899999999999999988877
No 64
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=38.36 E-value=17 Score=34.91 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=4.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 046676 193 ERGMLMQEVVELHQQHRGTASHM 215 (487)
Q Consensus 193 ek~~L~qELvkLqQQQ~~~~~qm 215 (487)
|++.|..|+++|+.+.+.+.+++
T Consensus 25 EKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 65
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=38.30 E-value=2.2e+02 Score=25.97 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=6.1
Q ss_pred hhhccccceee
Q 046676 124 RQLNTYGFRKI 134 (487)
Q Consensus 124 RQLN~YGFrKv 134 (487)
.+|-.+||-..
T Consensus 9 ~~L~s~G~~~~ 19 (151)
T PF11559_consen 9 QQLLSRGYPSD 19 (151)
T ss_pred HHHHHCCCCCC
Confidence 35566677443
No 66
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.62 E-value=1.5e+02 Score=26.96 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQ 231 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQ 231 (487)
+.+.|-+.+..+..++..+|.+.......++.+..++...+++++.
T Consensus 42 ~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 42 ENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444444444433
No 67
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=36.67 E-value=1.6e+02 Score=25.35 Aligned_cols=69 Identities=13% Similarity=0.307 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhhhh
Q 046676 184 QGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKE 254 (487)
Q Consensus 184 e~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvqnP~fl~ql~~~~~ 254 (487)
..+++..+. +..|+.|+...-..........+.+.+.+..|+.-|.+|+.++..+-.+ .++..+++..+
T Consensus 10 ~~~l~~v~~-~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~~~de-e~l~~lL~~ND 78 (100)
T PF03127_consen 10 RSELEKVKN-NAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEEVEDE-ELLGELLQAND 78 (100)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcCcH-HHHHHHHHHHH
Confidence 356666655 3455566654444444555666677788888888888998888765444 48888887543
No 68
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.55 E-value=2e+02 Score=29.93 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQ 227 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eq 227 (487)
+++.||.+...+..+|..++++......+++.+++.+.....
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554455555554444444444444444444444433
No 69
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=36.46 E-value=1.7e+02 Score=25.23 Aligned_cols=54 Identities=24% Similarity=0.449 Sum_probs=34.1
Q ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHH
Q 046676 179 EKSGVQGDIEQLRKERGMLMQEVVELHQQ---HRGTASHMEAINQRIHAAEQRQKQM 232 (487)
Q Consensus 179 ~~~~Le~EIE~LK~ek~~L~qELvkLqQQ---Q~~~~~qmq~lnqRLq~~EqrQqQM 232 (487)
.+..+..+++.|+.+++.+..++..+... -..+..++..+.+.+..++.....+
T Consensus 37 ~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 37 ERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888888888888887766653 2344455566666666655544433
No 70
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=36.24 E-value=1.8e+02 Score=27.51 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQR 228 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eqr 228 (487)
+++-++.|++....|...+.+|++....+.+++..+.+.++...++
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666776666666666666666666666666665555544443
No 71
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.18 E-value=1.6e+02 Score=32.34 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=23.1
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
..|+.++..++.+...+..++.+..........++..++.++..+
T Consensus 62 ~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 345555555555555555555544444444445555555555443
No 72
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=35.90 E-value=2e+02 Score=24.76 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=14.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQH 208 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ 208 (487)
.++.+|+.|..++..|.+||-....+.
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~ 62 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARA 62 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 455556666666666655555444443
No 73
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.90 E-value=1.5e+02 Score=27.56 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 184 QGDIEQLRKERGMLMQEVVELHQQH 208 (487)
Q Consensus 184 e~EIE~LK~ek~~L~qELvkLqQQQ 208 (487)
+.+|..|.+.+..|..+|.+++.+.
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 74
>smart00338 BRLZ basic region leucin zipper.
Probab=35.69 E-value=89 Score=24.71 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQ 207 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQ 207 (487)
|+.+++.|..++..|..++..|+++
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 75
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.46 E-value=1.2e+02 Score=28.43 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=14.6
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 180 KSGVQGDIEQLRKERGMLMQEVVELHQQHR 209 (487)
Q Consensus 180 ~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~ 209 (487)
...|+.++..|+.+...|..++..|+.+..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555544444443
No 76
>PRK14158 heat shock protein GrpE; Provisional
Probab=35.37 E-value=2.8e+02 Score=27.39 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=35.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
..+.+++.|..+...|..|+.+++.+..++...+++++.|...-
T Consensus 37 ~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE 80 (194)
T PRK14158 37 AAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKE 80 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888888888899999988888888888888888654
No 77
>PRK14139 heat shock protein GrpE; Provisional
Probab=35.33 E-value=2.4e+02 Score=27.61 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAE 226 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~E 226 (487)
-+.+++.|+.+...|..++.+|+.+...+...++..+.|.+.-.
T Consensus 30 ~~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~ 73 (185)
T PRK14139 30 AEDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDV 73 (185)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777778888888888888888888888888887543
No 78
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=35.27 E-value=1.6e+02 Score=27.85 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQ 207 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQ 207 (487)
|++.|+.++..++..|.+-+++
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~ 23 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQ 23 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5667776666665555443333
No 79
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.08 E-value=1.3e+02 Score=32.79 Aligned_cols=17 Identities=29% Similarity=0.261 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 046676 210 GTASHMEAINQRIHAAE 226 (487)
Q Consensus 210 ~~~~qmq~lnqRLq~~E 226 (487)
.++.-|+.+..|+..||
T Consensus 302 di~E~~Es~qtRisklE 318 (395)
T PF10267_consen 302 DIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445556666777777
No 80
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=34.99 E-value=1e+02 Score=30.86 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHR 209 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~ 209 (487)
....|++++..|.+|+.+|+.++.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666665554
No 81
>PHA02562 46 endonuclease subunit; Provisional
Probab=34.35 E-value=2.1e+02 Score=31.21 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcChhHHHHHh
Q 046676 231 QMVSFLAKLLQNPAFLARLK 250 (487)
Q Consensus 231 QMlsFLakvvqnP~fl~ql~ 250 (487)
....++..++.+++|..++.
T Consensus 403 ~~~~~i~~~~~~~g~~~~i~ 422 (562)
T PHA02562 403 YHRGIVTDLLKDSGIKASII 422 (562)
T ss_pred HHHHHHHHHHHhhhHHHHHH
Confidence 34567777777777765444
No 82
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=34.24 E-value=1.6e+02 Score=31.92 Aligned_cols=88 Identities=14% Similarity=0.224 Sum_probs=50.1
Q ss_pred ccccCchhhhc-cccccCCCCccccCCCCCCCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHH
Q 046676 145 AFQRGRRHLLK-NIRRRKSPQSQQIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQ----HRGTASHMEAIN 219 (487)
Q Consensus 145 ~F~Rg~p~LL~-~IkRkk~~~s~q~~s~~g~~~e~~~~~Le~EIE~LK~ek~~L~qELvkLqQQ----Q~~~~~qmq~ln 219 (487)
.|.|.+|+.++ +++||.-........ --..+..+..+..+++.|+.+++.+..++..+++. ...+..+++.+.
T Consensus 5 k~ir~n~~~v~~~l~~R~~~~~~~vd~--i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~ 82 (418)
T TIGR00414 5 KLLRNNPDLVKESLKARGLSVDIDLEK--LIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELK 82 (418)
T ss_pred HHHHhCHHHHHHHHHhcCCChhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 45677777554 555554110000000 01122344556778899999999888888765432 234455667777
Q ss_pred HHHHHHHHHHHHHHH
Q 046676 220 QRIHAAEQRQKQMVS 234 (487)
Q Consensus 220 qRLq~~EqrQqQMls 234 (487)
+++..+++..+.+-.
T Consensus 83 ~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 83 EELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777776655543
No 83
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=34.15 E-value=1.4e+02 Score=26.81 Aligned_cols=33 Identities=12% Similarity=0.292 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046676 197 LMQEVVELHQQHRGTASHMEAINQRIHAAEQRQ 229 (487)
Q Consensus 197 L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQ 229 (487)
+-.+|..|+.++...-..++.+.++|+.|..|-
T Consensus 65 QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 65 QGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333344444444433
No 84
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=33.46 E-value=1.8e+02 Score=31.30 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASHMEA--INQRIHAAEQRQKQM 232 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~--lnqRLq~~EqrQqQM 232 (487)
.|.-.||.|+..|.+|..+|+.+...++..+.. +-++++.++-.-.++
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i 81 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKI 81 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 366778888888888888888888877777653 555555554433333
No 85
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.15 E-value=3e+02 Score=25.88 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=35.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLL 240 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvv 240 (487)
..+..|++.+.+....+..++..++..........+...++++..+...+.|..=+..+.
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666655555556666666665555555444444433
No 86
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=32.97 E-value=2.5e+02 Score=25.78 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQ 227 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eq 227 (487)
+++.++.....+..++..|+.....+..++..+.+|...+.+
T Consensus 45 ~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~h 86 (141)
T PF13874_consen 45 EIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSH 86 (141)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666667777754444444455554444443333
No 87
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=32.28 E-value=2.4e+02 Score=29.88 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 046676 188 EQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNP 243 (487)
Q Consensus 188 E~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvqnP 243 (487)
.+...+...|..++++|+++.+..-.+...+.++|......|.++..=|..+-...
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777888888887777777777888888888888888876666665544
No 88
>PRK14163 heat shock protein GrpE; Provisional
Probab=31.96 E-value=2.9e+02 Score=27.80 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Q 046676 184 QGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQR--QKQMVSFLAKLLQ 241 (487)
Q Consensus 184 e~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eqr--QqQMlsFLakvvq 241 (487)
..+.+.|+.+...|..++.+|+.++.++...+++++.|...-... ..-.-.|+..++.
T Consensus 39 ~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLp 98 (214)
T PRK14163 39 AAATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLP 98 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777777788888888888888888888888888653332 2223344444443
No 89
>PRK14154 heat shock protein GrpE; Provisional
Probab=31.91 E-value=2.6e+02 Score=27.95 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHA 224 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~ 224 (487)
+++.|+.+...|.+++.+++.++..+...++.++.|.+.
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~k 91 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIER 91 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777777777777777777764
No 90
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.59 E-value=88 Score=35.85 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046676 187 IEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHA 224 (487)
Q Consensus 187 IE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~ 224 (487)
++.+++-+.....||.+|+-+.+.+..++.++|+++..
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEe 118 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEE 118 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444555555554444444444444444433
No 91
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=31.30 E-value=21 Score=24.97 Aligned_cols=24 Identities=17% Similarity=0.298 Sum_probs=16.8
Q ss_pred HhhcCCCCCCeeEEcCCCCeEEEe
Q 046676 77 DLVDDTSLDPIISWGSTGESFVVW 100 (487)
Q Consensus 77 ~mVedp~~~~IIsWs~~G~sFvI~ 100 (487)
.+++.+..+....|++||+.++..
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEE
Confidence 355666677788999999987765
No 92
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.27 E-value=1.9e+02 Score=26.96 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=27.4
Q ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHH
Q 046676 179 EKSGVQGDIEQLRKERGMLMQEVVELHQQHR--GTASHMEAINQRIHAAEQRQK 230 (487)
Q Consensus 179 ~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~--~~~~qmq~lnqRLq~~EqrQq 230 (487)
....+..++..|+.+...|..|+..|..... .+..++..+.+.+..++.+..
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777766665432 223333344444444444433
No 93
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=30.98 E-value=3.5e+02 Score=23.36 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHM 215 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qm 215 (487)
|+..|...-.....|..||.+|+.+...+.++.
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~ 41 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556677777777777665555443
No 94
>PRK14162 heat shock protein GrpE; Provisional
Probab=30.72 E-value=3.2e+02 Score=26.94 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHA 224 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~ 224 (487)
...+++.|+.+...|..++.+++.+...+...+++++.|...
T Consensus 37 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 37 KQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677777777778888888888888888888888877764
No 95
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.60 E-value=1.7e+02 Score=31.76 Aligned_cols=87 Identities=15% Similarity=0.238 Sum_probs=50.8
Q ss_pred ccccCchhhh-ccccccCCCCccccCCCCCCCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHH
Q 046676 145 AFQRGRRHLL-KNIRRRKSPQSQQIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQH---RGTASHMEAINQ 220 (487)
Q Consensus 145 ~F~Rg~p~LL-~~IkRkk~~~s~q~~s~~g~~~e~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ---~~~~~qmq~lnq 220 (487)
.|.|.+|+.+ .++++|. .. ..... --..+..+..+..+++.|+.+++.+..++..+++.. ..+..+.+.+.+
T Consensus 5 k~ir~n~~~v~~~l~~R~-~~-~~vd~--i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~ 80 (425)
T PRK05431 5 KLIRENPEAVKEALAKRG-FP-LDVDE--LLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKE 80 (425)
T ss_pred HHHHhCHHHHHHHHHhcC-Cc-ccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Confidence 3556677754 4555553 11 00000 011223455677789999999999988887644332 235556677777
Q ss_pred HHHHHHHHHHHHHHH
Q 046676 221 RIHAAEQRQKQMVSF 235 (487)
Q Consensus 221 RLq~~EqrQqQMlsF 235 (487)
++..++..++.+-.=
T Consensus 81 ~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 81 EIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777766655443
No 96
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.50 E-value=1.6e+02 Score=24.02 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 199 QEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 199 qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
..|.+.+++...+..+++.|.+||.
T Consensus 25 ~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 25 DVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444443
No 97
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=30.22 E-value=2.1e+02 Score=28.48 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046676 194 RGMLMQEVVELHQQHRGTASHMEAINQRIHA 224 (487)
Q Consensus 194 k~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~ 224 (487)
+..|++|+.+--|.+-.-...++.+|+||+.
T Consensus 39 ~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqe 69 (195)
T PF10226_consen 39 HGRLMKEVNRRLQQHLNEIRGLKEVNQKLQE 69 (195)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666654444444444566666666664
No 98
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.08 E-value=2.4e+02 Score=31.51 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
.|-.++..++++...|..+-.+|+++.+.+.++-..+.+|++
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 455677777777777777777777777776666666655554
No 99
>PRK14145 heat shock protein GrpE; Provisional
Probab=29.99 E-value=3.8e+02 Score=26.51 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=36.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
....+++.|+.+...+..++.+++.+..++...++..+.|...-
T Consensus 42 ~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE 85 (196)
T PRK14145 42 QTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKE 85 (196)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888899999999998888888999998888753
No 100
>PRK14155 heat shock protein GrpE; Provisional
Probab=29.83 E-value=2.3e+02 Score=28.21 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046676 188 EQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHA 224 (487)
Q Consensus 188 E~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~ 224 (487)
+.|..+...|..|+.+++.+...+...++.++.|.+.
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~k 52 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAER 52 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555666666666666666777777777754
No 101
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=29.79 E-value=2.4e+02 Score=29.18 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=16.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTA 212 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~ 212 (487)
.|+.+|..|-.++..|..|-..||.+...+.
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~ 124 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLL 124 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444433
No 102
>PRK14161 heat shock protein GrpE; Provisional
Probab=29.62 E-value=3.2e+02 Score=26.49 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 184 QGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 184 e~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
+..++.+..+...|..++.+++.+...+...++.++.|...-
T Consensus 18 ~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke 59 (178)
T PRK14161 18 EEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKA 59 (178)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666677777777777777777777777777643
No 103
>COG1422 Predicted membrane protein [Function unknown]
Probab=29.40 E-value=2e+02 Score=28.68 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQ 206 (487)
+++++++....+..|..+.++
T Consensus 73 km~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 73 KMKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444
No 104
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=29.30 E-value=2.2e+02 Score=26.50 Aligned_cols=44 Identities=16% Similarity=0.404 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAE 226 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~E 226 (487)
++..+..|......+.+||..|+.+...+..++..++++|..+.
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666667777777777777777777766666665443
No 105
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.93 E-value=3.3e+02 Score=31.05 Aligned_cols=45 Identities=11% Similarity=0.284 Sum_probs=23.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHR-------GTASHMEAINQRIHAAE 226 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~-------~~~~qmq~lnqRLq~~E 226 (487)
.+++|+..||+++..|..+|..++.+.. ...++.+.|.++|..+.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555666666666666666665554321 22344455555555554
No 106
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=28.49 E-value=2.9e+02 Score=27.36 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 191 RKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLA 237 (487)
Q Consensus 191 K~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLa 237 (487)
.+++..|.++|..-+.++...+.....+..+|..-..++++|..+|+
T Consensus 140 EkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~~l~Lv 186 (192)
T PF09727_consen 140 EKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSFVLMLV 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433334444444444444444433345555555544
No 107
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=28.42 E-value=1e+02 Score=28.36 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=9.0
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVV 202 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELv 202 (487)
.++.+++.|.++...|..++.
T Consensus 15 ~~~~~l~~l~~~~~~l~~~~~ 35 (165)
T PF01025_consen 15 ELEEELEELEKEIEELKERLL 35 (165)
T ss_dssp CCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445544444444433333
No 108
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.23 E-value=1.7e+02 Score=23.20 Aligned_cols=11 Identities=9% Similarity=0.718 Sum_probs=6.1
Q ss_pred cChhHHHHHhh
Q 046676 241 QNPAFLARLKQ 251 (487)
Q Consensus 241 qnP~fl~ql~~ 251 (487)
.+|.++..+..
T Consensus 52 ~~~~~ie~~AR 62 (80)
T PF04977_consen 52 NDPDYIEKVAR 62 (80)
T ss_pred CCHHHHHHHHH
Confidence 36666655543
No 109
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.15 E-value=3.8e+02 Score=22.85 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 046676 187 IEQLRKERGMLMQEVVELHQQHRGTASHME 216 (487)
Q Consensus 187 IE~LK~ek~~L~qELvkLqQQQ~~~~~qmq 216 (487)
|..--.....|..|+.+|+.+...+.+..+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 333333344555666666655544444433
No 110
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.95 E-value=1.3e+02 Score=23.05 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRG 210 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~ 210 (487)
|....+.|+.+...|.+|...|+.+...
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544443
No 111
>PF14854 LURAP: Leucine rich adaptor protein
Probab=27.93 E-value=1.2e+02 Score=28.06 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 192 KERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 192 ~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
.....|.+|++.|||-=..+.+|+-.+|+-|+.+
T Consensus 22 ~kl~~Lr~EM~~LRqlDvkLL~QL~~vNEsIe~~ 55 (121)
T PF14854_consen 22 AKLAFLRKEMAGLRQLDVKLLQQLLAVNESIEEV 55 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3345666788888887778888888888888743
No 112
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.90 E-value=2.3e+02 Score=28.74 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=24.6
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQR 228 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eqr 228 (487)
..++..+.+|-+....--+-+.+|++|...+.+++..|+-.++.+...
T Consensus 36 ~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~ 83 (263)
T PRK10803 36 GSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQ 83 (263)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344555655544444434445566666665555555555554443333
No 113
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=27.84 E-value=2.2e+02 Score=25.72 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQ 227 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eq 227 (487)
+++-++.|++....|...+.+++++......++..+.+.++.+.+
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666555666666666555444
No 114
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=27.67 E-value=1.8e+02 Score=31.80 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 046676 197 LMQEVVELHQQHRGTASHMEAINQR 221 (487)
Q Consensus 197 L~qELvkLqQQQ~~~~~qmq~lnqR 221 (487)
|..++.+|..|+..+..+|+.+++|
T Consensus 411 l~~~i~~l~~~i~~~~~rl~~~e~r 435 (462)
T PRK08032 411 VNKTLKKLTKQYNAVSDSIDATIAR 435 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333333
No 115
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=27.43 E-value=2.3e+02 Score=25.31 Aligned_cols=6 Identities=17% Similarity=0.706 Sum_probs=2.3
Q ss_pred HHHHHH
Q 046676 218 INQRIH 223 (487)
Q Consensus 218 lnqRLq 223 (487)
|++||.
T Consensus 48 Lr~~l~ 53 (107)
T PF06156_consen 48 LRERLE 53 (107)
T ss_pred HHHHHH
Confidence 333333
No 116
>PRK14140 heat shock protein GrpE; Provisional
Probab=27.37 E-value=4.1e+02 Score=26.14 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
.+++.|+.+...|..++.+|+.+.......++..+.|...-
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE 77 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKE 77 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777788888888888887778888887777653
No 117
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=27.20 E-value=2.5e+02 Score=31.32 Aligned_cols=56 Identities=9% Similarity=0.211 Sum_probs=34.6
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKL 239 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakv 239 (487)
..+..++..|.++...+...+...+++ .+.|...|...+..|+..+..|.+||..+
T Consensus 425 ~~l~~~i~~l~~~i~~~~~rl~~~e~~---~~~qf~~m~~~~~~m~sq~~~L~q~l~~~ 480 (483)
T COG1345 425 DSLNKQIKSLDKDIKSLDKRLEAAEER---YKTQFNTLDDMMTQMNSQSSYLTQQLVSV 480 (483)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666777777666666655554444 34555556666666666666777776654
No 118
>PRK14153 heat shock protein GrpE; Provisional
Probab=27.17 E-value=2.7e+02 Score=27.54 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHA 224 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~ 224 (487)
+++.+..+...|..++.+|+.++..+...++.++.|...
T Consensus 34 ~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~k 72 (194)
T PRK14153 34 EDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAR 72 (194)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666667777777777777777778888777764
No 119
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.03 E-value=2.3e+02 Score=30.78 Aligned_cols=12 Identities=0% Similarity=0.047 Sum_probs=7.4
Q ss_pred hHHHhhhcCCCC
Q 046676 39 VEELEAFSSFAT 50 (487)
Q Consensus 39 ~a~~~~~ss~~~ 50 (487)
...|++.+...+
T Consensus 97 ~vD~~~~~~i~~ 108 (451)
T PF03961_consen 97 RVDYRELGFIPS 108 (451)
T ss_pred CCCHHHcCcceE
Confidence 456777666554
No 120
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=27.03 E-value=2.1e+02 Score=27.29 Aligned_cols=9 Identities=11% Similarity=0.604 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 046676 225 AEQRQKQMV 233 (487)
Q Consensus 225 ~EqrQqQMl 233 (487)
+..++++|+
T Consensus 136 l~er~~e~l 144 (158)
T PF09744_consen 136 LHERERELL 144 (158)
T ss_pred HHHHHHHHH
Confidence 333444443
No 121
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.95 E-value=2.1e+02 Score=26.37 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046676 187 IEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRI 222 (487)
Q Consensus 187 IE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRL 222 (487)
++.|+.....|..++..|+.|.+....+++.|...|
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666555554544444443
No 122
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.85 E-value=3.7e+02 Score=28.27 Aligned_cols=39 Identities=10% Similarity=0.268 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 187 IEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 187 IE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
+.++|.+...+..++...+++......+++.++.++...
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~ 244 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDL 244 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343333344444444444444444444444444433
No 123
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.40 E-value=3.1e+02 Score=26.07 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=11.5
Q ss_pred hHHhhhccccceeec
Q 046676 121 SFVRQLNTYGFRKID 135 (487)
Q Consensus 121 SFvRQLN~YGFrKv~ 135 (487)
.||++|..=||..-+
T Consensus 6 ~~v~~Le~~Gft~~Q 20 (177)
T PF07798_consen 6 KFVKRLEAAGFTEEQ 20 (177)
T ss_pred HHHHHHHHCCCCHHH
Confidence 588888888886643
No 124
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.27 E-value=3.6e+02 Score=28.03 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=20.2
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 180 KSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 180 ~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
...++.+|+.|-.+...+..++..++.+...+...|..++..|.
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444444444444444444443333
No 125
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=26.15 E-value=2.5e+02 Score=30.17 Aligned_cols=56 Identities=14% Similarity=0.299 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHR---GTASHMEAINQRIHAAEQRQKQMVSFLAK 238 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~---~~~~qmq~lnqRLq~~EqrQqQMlsFLak 238 (487)
+..-++.|+.+...+..++.+|..+.. ....++..+++++.+.+++..++..+++.
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566667777777777776665421 33466777788888888877776666543
No 126
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=26.08 E-value=1.8e+02 Score=24.18 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046676 196 MLMQEVVELHQQHRGTASHMEAINQRIHAAEQ 227 (487)
Q Consensus 196 ~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eq 227 (487)
.|+.|-.+|..++......+..++..+...+.
T Consensus 16 ~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~ 47 (74)
T PF12329_consen 16 QLMEEGEKLSKKELKLNNTIKKLRAKIKELEK 47 (74)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 127
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.76 E-value=9.6e+02 Score=26.91 Aligned_cols=216 Identities=15% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCCCCCCccccccCCCCC---------CCCCCccCCCCcchHHHhhhcCCCCCCCCCCCCCcccCCCCCCChhHHHHH--
Q 046676 8 YPKSPPNTAVITSSVPEA---------TPLSMETIAFPTTVEELEAFSSFATTPAADVPQPLDCLHGNPIPPFLAKTF-- 76 (487)
Q Consensus 8 ~~~~~~~~~v~s~s~p~s---------~P~~~~~~~~~~~~a~~~~~ss~~~~~~~~~p~p~~~~~~~~~p~Fl~KLy-- 76 (487)
||-+|-..+ -++|+.+| .+.++.+..++.++. ...+++.-+-+..++..++- ++.+..|.|.+-+.
T Consensus 13 ap~~p~rLq-Gssss~as~adglla~T~s~pssp~gss~dsp-~~~~g~~Q~s~lsd~es~~g-lg~nsfp~~yse~r~~ 89 (502)
T KOG0982|consen 13 APMPPMRLQ-GSSSSSASVADGLLAETRSRPSSPGGSSSDSP-LIAFGGDQCSALSDFESQMG-LGLNSFPKRYSELRER 89 (502)
T ss_pred CCCCccccC-CCccCCCCcccchhhhccCCCCCCCCCCCCCc-hhhhcchhhccccccccccC-cccccchHHHHHHhcC
Q ss_pred ------------------HhhcCCCCCCeeEEcCCCCeEEEe--CCchhhhhhcCCCCCCCChhhHHhhhcc-----ccc
Q 046676 77 ------------------DLVDDTSLDPIISWGSTGESFVVW--DPLEFSRLILPRNFKHNNFSSFVRQLNT-----YGF 131 (487)
Q Consensus 77 ------------------~mVedp~~~~IIsWs~~G~sFvI~--d~~~F~k~VLPkyFKh~nfsSFvRQLN~-----YGF 131 (487)
.|.++..+...=....+.+.|-|+ .......+++...=+-.. -||. |+.
T Consensus 90 nm~gsde~t~litnn~~~svg~es~hn~se~~tD~etrtnv~~~lesav~se~gs~~~~~dh------eln~e~~dny~~ 163 (502)
T KOG0982|consen 90 NMSGSDERTRLITNNSNISVGKESMHNLSEQLTDNETRTNVLLSLESAVGSESGSRLKREDH------ELNTESWDNYKY 163 (502)
T ss_pred CCCCcchhhhhhccccccccccccccccccCCCCCcccccccccccccccchhhccccccch------hhccchHHHHHH
Q ss_pred eeecCCceeEEccccccCchhhhccccccCCCCccccCCCCC-------CCchhhhcCchHHHHHHHHHHHHHHH-----
Q 046676 132 RKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIG-------PFSEAEKSGVQGDIEQLRKERGMLMQ----- 199 (487)
Q Consensus 132 rKv~~d~~eF~h~~F~Rg~p~LL~~IkRkk~~~s~q~~s~~g-------~~~e~~~~~Le~EIE~LK~ek~~L~q----- 199 (487)
+....+...-.-+.|+-..|. +.|.+++.-++-....... -..+..+.+++..+..|+++...|..
T Consensus 164 qsl~k~~ls~~~~a~~snspt--kriss~~~~nssg~ssn~~~tedl~~e~mee~r~di~~kv~flerkv~eledd~~~~ 241 (502)
T KOG0982|consen 164 QSLEKDLLSVKKDAERSNSPT--KRISSSSSFNSSGKSSNKLETEDLLVEGMEEERIDIERKVRFLERKVQELEDDQNIA 241 (502)
T ss_pred HHHHhhhccccchhhccCchh--hhhhhhhhcccccccccccchhhhhhhhhhchhhhHHHHHHHHHHHHHHhhcchhcc
Q ss_pred --HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 200 --EVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVS 234 (487)
Q Consensus 200 --ELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMls 234 (487)
--.+++|+...+.++...|.+.+...|-+-.+++.
T Consensus 242 gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~ 278 (502)
T KOG0982|consen 242 GDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLS 278 (502)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
No 128
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=25.69 E-value=1.4e+02 Score=28.15 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=20.1
Q ss_pred CchhhhcCchHHHHHHHHHHHHHHHHHHH
Q 046676 175 FSEAEKSGVQGDIEQLRKERGMLMQEVVE 203 (487)
Q Consensus 175 ~~e~~~~~Le~EIE~LK~ek~~L~qELvk 203 (487)
.+..+...|+.|++.|+.++..+.+++..
T Consensus 8 lT~eg~~~L~~EL~~L~~~r~~i~~~i~~ 36 (158)
T PRK05892 8 LAPAARDHLEAELARLRARRDRLAVEVND 36 (158)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45566777888888888766666666543
No 129
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=25.08 E-value=2.1e+02 Score=27.06 Aligned_cols=47 Identities=21% Similarity=0.228 Sum_probs=37.1
Q ss_pred hhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 177 EAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 177 e~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
+..-..++.+++.|.+-...|.++|.+|-++.....++++.+.++..
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455688899999999999999999999988877777776665554
No 130
>PRK14147 heat shock protein GrpE; Provisional
Probab=24.99 E-value=3.9e+02 Score=25.72 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046676 191 RKERGMLMQEVVELHQQHRGTASHMEAINQRIHA 224 (487)
Q Consensus 191 K~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~ 224 (487)
..+...|..|+.+++.+...+...+++.+.|.+.
T Consensus 24 ~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~k 57 (172)
T PRK14147 24 KAEVESLRSEIALVKADALRERADLENQRKRIAR 57 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555666666666666666666666654
No 131
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.92 E-value=3.8e+02 Score=27.90 Aligned_cols=9 Identities=11% Similarity=0.257 Sum_probs=4.1
Q ss_pred hhhHHhhhc
Q 046676 119 FSSFVRQLN 127 (487)
Q Consensus 119 fsSFvRQLN 127 (487)
..+|.|.+.
T Consensus 127 vK~~aRl~a 135 (325)
T PF08317_consen 127 VKTYARLEA 135 (325)
T ss_pred HHHHHHHHH
Confidence 444444443
No 132
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=24.82 E-value=4.2e+02 Score=30.28 Aligned_cols=62 Identities=11% Similarity=0.245 Sum_probs=44.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNP 243 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvqnP 243 (487)
.+...++.|+.-...+...+..-+++-.....++..++++.+.++.+++-+..|+.+..=++
T Consensus 49 ~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~ 110 (618)
T PF06419_consen 49 RLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSE 110 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 34455666666666666666666666666777888888888889999999999998874443
No 133
>PRK14144 heat shock protein GrpE; Provisional
Probab=24.75 E-value=4.5e+02 Score=26.13 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
.+++.|..+...|..|+.+++.+...+...++..+.|.+.-
T Consensus 45 ~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE 85 (199)
T PRK14144 45 PSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMERE 85 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667778888888888877778888888887653
No 134
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.56 E-value=1.3e+02 Score=33.50 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046676 177 EAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRI 222 (487)
Q Consensus 177 e~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRL 222 (487)
+.....|+.+++.||++...|.+...+++++.+.++.+++.|++++
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
No 135
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.48 E-value=4.7e+02 Score=25.71 Aligned_cols=6 Identities=17% Similarity=0.407 Sum_probs=2.3
Q ss_pred Chhhhh
Q 046676 313 SPDYLL 318 (487)
Q Consensus 313 s~n~l~ 318 (487)
++.|..
T Consensus 200 ALgyva 205 (302)
T PF10186_consen 200 ALGYVA 205 (302)
T ss_pred HHHHHH
Confidence 333333
No 136
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=24.33 E-value=1.2e+02 Score=28.35 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=19.5
Q ss_pred hhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 177 EAEKSGVQGDIEQLRKERGMLMQEVVELHQQHR 209 (487)
Q Consensus 177 e~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~ 209 (487)
|.++..|..+|+.|+.++..|..|+.-++....
T Consensus 80 E~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 80 EKEKAELQQQVEKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666665555543
No 137
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.04 E-value=3.6e+02 Score=23.73 Aligned_cols=7 Identities=14% Similarity=0.581 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 046676 217 AINQRIH 223 (487)
Q Consensus 217 ~lnqRLq 223 (487)
.++.+++
T Consensus 83 ~l~~~l~ 89 (106)
T PF10805_consen 83 ELSARLQ 89 (106)
T ss_pred HHHHHHH
Confidence 3333333
No 138
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.04 E-value=22 Score=34.19 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.4
Q ss_pred HHHHHH
Q 046676 196 MLMQEV 201 (487)
Q Consensus 196 ~L~qEL 201 (487)
.|+.||
T Consensus 18 lLE~EL 23 (166)
T PF04880_consen 18 LLESEL 23 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334444
No 139
>PLN02320 seryl-tRNA synthetase
Probab=24.04 E-value=2.6e+02 Score=31.45 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=46.1
Q ss_pred ccccccCchhhh-ccccccCCCCccccCCCCCCCchhhhcCchHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHH
Q 046676 143 NEAFQRGRRHLL-KNIRRRKSPQSQQIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQ--QHRGTASHMEAIN 219 (487)
Q Consensus 143 h~~F~Rg~p~LL-~~IkRkk~~~s~q~~s~~g~~~e~~~~~Le~EIE~LK~ek~~L~qELvkLqQ--QQ~~~~~qmq~ln 219 (487)
.-.|.|.+++.+ .+|+||.... .... --..+..+..+..+++.|+.+++.+..++...++ +.+.+..+++.+.
T Consensus 68 D~k~ir~n~~~v~~~l~~R~~~~--~vd~--l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk 143 (502)
T PLN02320 68 DFKWIRDNKEAVAINIRNRNSNA--NLEL--VLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLK 143 (502)
T ss_pred CHHHHHhCHHHHHHHHHhcCCCc--CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Confidence 346667777754 4666654210 0000 0011223445667788888888887777754111 1223444556666
Q ss_pred HHHHHHHHHHHHHHH
Q 046676 220 QRIHAAEQRQKQMVS 234 (487)
Q Consensus 220 qRLq~~EqrQqQMls 234 (487)
+++..+|...+.+-.
T Consensus 144 ~~i~~le~~~~~~~~ 158 (502)
T PLN02320 144 EGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665555433
No 140
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.03 E-value=5e+02 Score=26.21 Aligned_cols=43 Identities=16% Similarity=0.377 Sum_probs=28.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHA 224 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~ 224 (487)
....|+..++.....|..++..|+.+...+..++..+..++..
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 3445666777777777777777777776666666666655543
No 141
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=23.49 E-value=4.1e+02 Score=25.46 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 046676 187 IEQLRKERGMLMQEVV 202 (487)
Q Consensus 187 IE~LK~ek~~L~qELv 202 (487)
|..|+.+...|..++.
T Consensus 118 l~~l~~~~~~L~~~~~ 133 (194)
T PF08614_consen 118 LAELEAELAQLEEKIK 133 (194)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 142
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.44 E-value=5.1e+02 Score=27.09 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQ 207 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQ 207 (487)
+..|++.|.+++..|.+|+..++.+
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 143
>PRK09039 hypothetical protein; Validated
Probab=23.35 E-value=4.1e+02 Score=28.11 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVEL 204 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkL 204 (487)
+|+.||.+...|..+|...
T Consensus 145 qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 145 QIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 144
>PLN02678 seryl-tRNA synthetase
Probab=23.22 E-value=2.8e+02 Score=30.63 Aligned_cols=60 Identities=22% Similarity=0.234 Sum_probs=36.7
Q ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 178 AEKSGVQGDIEQLRKERGMLMQEVVELHQQH---RGTASHMEAINQRIHAAEQRQKQMVSFLA 237 (487)
Q Consensus 178 ~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ---~~~~~qmq~lnqRLq~~EqrQqQMlsFLa 237 (487)
..+..+..+++.|+.+++.+..++..++... ..+..+++.+.+++..++...+.+-.=|.
T Consensus 40 ~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 40 KEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788888888888888886543222 23344556666777666666555443333
No 145
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=23.17 E-value=5.1e+02 Score=28.83 Aligned_cols=68 Identities=16% Similarity=0.330 Sum_probs=44.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcChhHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRI----HAAEQRQKQMVSFLAKLLQNPAFLARL 249 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRL----q~~EqrQqQMlsFLakvvqnP~fl~ql 249 (487)
.+..|.++|+.+...|.+++.++..++....+++..++.+= +.+.+..+..-.|...++...+-+..|
T Consensus 180 ~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sl 251 (447)
T KOG2751|consen 180 DLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSL 251 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 45567888888888899999888888887777776665432 223334444555566666555444444
No 146
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=23.03 E-value=3.1e+02 Score=23.64 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRI 222 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRL 222 (487)
..++.|-+++..|+++|..+.....=...|++.+.+|+
T Consensus 7 k~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq 44 (84)
T PF11414_consen 7 KRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQ 44 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999877665544444444444443
No 147
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=22.94 E-value=4.4e+02 Score=26.24 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVEL 204 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkL 204 (487)
||..||..+..|..|-.+|
T Consensus 56 EIR~LKe~NqkLqedNqEL 74 (195)
T PF10226_consen 56 EIRGLKEVNQKLQEDNQEL 74 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 148
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.81 E-value=3.2e+02 Score=27.66 Aligned_cols=54 Identities=24% Similarity=0.261 Sum_probs=35.5
Q ss_pred eEEccccccCchhhhccccccCCCCccccCCCCCCCchhhhcCchHHHHHHHHHHHHHHHHHHHHHH
Q 046676 140 EFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 140 eF~h~~F~Rg~p~LL~~IkRkk~~~s~q~~s~~g~~~e~~~~~Le~EIE~LK~ek~~L~qELvkLqQ 206 (487)
-+.||.|.+-+++|+..|.=..+.. +. -+-.+-.++++++.+..|..++..|-+
T Consensus 13 L~~hPeFf~~h~~Ll~~L~lph~~~----~t---------VSLve~ql~r~R~~~~~Le~~l~~L~~ 66 (218)
T COG3159 13 LRQHPEFFIQHAELLEELRLPHPVA----GT---------VSLVERQLARLRNRIRELEEELAALME 66 (218)
T ss_pred HHhCcHHHHhCHHHHHHcCCCCCCC----Ce---------eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999988754321 11 011234677777777777777765543
No 149
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.55 E-value=8.1e+02 Score=28.41 Aligned_cols=12 Identities=50% Similarity=0.576 Sum_probs=7.0
Q ss_pred CCCCccccccCC
Q 046676 11 SPPNTAVITSSV 22 (487)
Q Consensus 11 ~~~~~~v~s~s~ 22 (487)
|-|+|=|+..|.
T Consensus 327 S~p~ilViA~S~ 338 (741)
T KOG4460|consen 327 SVPNILVIATSS 338 (741)
T ss_pred CCCCeEEEEecC
Confidence 456666666553
No 150
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.32 E-value=2.4e+02 Score=34.88 Aligned_cols=15 Identities=7% Similarity=0.288 Sum_probs=7.8
Q ss_pred CccCCCCCCchhhhh
Q 046676 409 FDATAGMSSSSNELL 423 (487)
Q Consensus 409 ~~~~~~~~~~~~~~~ 423 (487)
++.||.|++-|+-+=
T Consensus 748 Ie~SGtmtGGG~~v~ 762 (1293)
T KOG0996|consen 748 IEKSGTMTGGGKKVK 762 (1293)
T ss_pred ecccccccCCCCcCC
Confidence 455555655544443
No 151
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=22.19 E-value=1.4e+02 Score=22.70 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQ 206 (487)
.+++.||+++-.|.-||..+.+
T Consensus 27 ~~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 27 EELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4788888888888888877654
No 152
>smart00338 BRLZ basic region leucin zipper.
Probab=21.96 E-value=3.6e+02 Score=21.23 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASH 214 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~q 214 (487)
.+..|..+...|..+...|+.+...+..+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333
No 153
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=21.84 E-value=3.8e+02 Score=29.47 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046676 214 HMEAINQRIHAAEQRQK 230 (487)
Q Consensus 214 qmq~lnqRLq~~EqrQq 230 (487)
-|+.+..||-.+|..|+
T Consensus 354 alEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 354 ALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555554443
No 154
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=21.65 E-value=2.6e+02 Score=30.39 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQR 228 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eqr 228 (487)
++..|+.++.++..|..|+.++...|..+..+|..+.+-+..+|.-
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~ 288 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEAD 288 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4456778888899999999999999988888888888877776653
No 155
>PRK14151 heat shock protein GrpE; Provisional
Probab=21.55 E-value=5.2e+02 Score=25.01 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 187 IEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 187 IE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
...|+.+...|..|+.+++.+...+...+++.+.|...-
T Consensus 22 ~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE 60 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQD 60 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445566667777777777777777777777643
No 156
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=21.44 E-value=2.8e+02 Score=24.96 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQM 232 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQM 232 (487)
+++.+|..-.+.|-.-..+-=|..+.++.+|+.|..++..+|.-.+.+
T Consensus 47 ekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l 94 (101)
T PF12308_consen 47 EKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSL 94 (101)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHh
Confidence 344444444333333222222344566677777777776666554443
No 157
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=21.43 E-value=3.5e+02 Score=31.40 Aligned_cols=15 Identities=7% Similarity=0.352 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHHH
Q 046676 210 GTASHMEAINQRIHA 224 (487)
Q Consensus 210 ~~~~qmq~lnqRLq~ 224 (487)
.+..+++.+++||..
T Consensus 611 ~l~~~i~~~e~rl~~ 625 (661)
T PRK06664 611 DNNKKIEEYEKKLES 625 (661)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 158
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=21.21 E-value=3.8e+02 Score=30.57 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=5.3
Q ss_pred chhhhhhcCC
Q 046676 103 LEFSRLILPR 112 (487)
Q Consensus 103 ~~F~k~VLPk 112 (487)
-.|...-||+
T Consensus 75 V~F~ayyLPk 84 (546)
T PF07888_consen 75 VQFQAYYLPK 84 (546)
T ss_pred EEECcccCCC
Confidence 3455555665
No 159
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=21.11 E-value=3.4e+02 Score=23.43 Aligned_cols=40 Identities=13% Similarity=0.278 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
-+..|......|..++.++..+...+..+|..+..+|..+
T Consensus 64 a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 64 ARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777777666666676666666543
No 160
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=21.02 E-value=3.1e+02 Score=24.03 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRI 222 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRL 222 (487)
.+..|..|..++..|.+|+..|+.+......+.+.+-..|
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 161
>KOG4057 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.75 E-value=6.2e+02 Score=24.51 Aligned_cols=59 Identities=14% Similarity=0.303 Sum_probs=42.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLL 240 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvv 240 (487)
.++.||..+-+---.+.+||-+-++-.+.++.+-.+....|...|-.-.--+.||..|-
T Consensus 16 ~iEkeI~~~mq~Ag~iiqeLgKEK~~~kn~e~qa~~F~ksit~VE~eLSaQi~YLtqV~ 74 (180)
T KOG4057|consen 16 TIEKEIDEMMQCAGEIIQELGKEKQIGKNMEDQANNFKKSITQVENELSAQIQYLTQVC 74 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555444334556788888888888888888888888888887777788888884
No 162
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=20.62 E-value=5.2e+02 Score=21.82 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046676 184 QGDIEQLRKERGMLMQEVVELHQQHRGT 211 (487)
Q Consensus 184 e~EIE~LK~ek~~L~qELvkLqQQQ~~~ 211 (487)
..+++.++.+...+...+..|+..+..+
T Consensus 7 ~~~v~~I~~~I~~i~~~v~~l~~l~~~~ 34 (117)
T smart00503 7 FEKVEEIRANIQKISQNVAELQKLHEEL 34 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665555555555544433
No 163
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.59 E-value=3.7e+02 Score=24.31 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046676 188 EQLRKERGMLMQEVVELHQQ 207 (487)
Q Consensus 188 E~LK~ek~~L~qELvkLqQQ 207 (487)
..|......|..++..|+++
T Consensus 11 ~~le~~l~~l~~el~~LK~~ 30 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQ 30 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444433
No 164
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.29 E-value=5.3e+02 Score=27.97 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=21.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
.|++-+..++.++..|...|..++++....+.+-+.+++.+.
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 444455555555555555555555554444444444444443
No 165
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.16 E-value=4.3e+02 Score=30.13 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=36.6
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 180 KSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 180 ~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
...++.|+..+++....|.-|+.+|+++...+..++..+..+++
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34577899999999999999999999999988888887766554
No 166
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.13 E-value=7.2e+02 Score=28.94 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=26.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
.++..+++|+.++..|..++.+|+.....+..++..+..++.
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777776666666666666655554
Done!