Query 046676
Match_columns 487
No_of_seqs 291 out of 1014
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 100.0 1.3E-38 4.6E-43 275.5 7.0 95 66-160 2-106 (106)
2 2ldu_A Heat shock factor prote 100.0 9.3E-38 3.2E-42 278.0 8.7 101 63-163 12-123 (125)
3 3hts_B Heat shock transcriptio 100.0 6E-32 2E-36 233.3 4.5 84 62-145 6-100 (102)
4 4avp_A ETS translocation varia 92.5 0.14 4.7E-06 44.5 4.8 75 68-142 11-90 (106)
5 2ypr_A Protein FEV; transcript 92.5 0.13 4.4E-06 44.4 4.6 74 70-143 9-87 (102)
6 2dao_A Transcription factor ET 88.7 0.38 1.3E-05 42.5 4.2 75 68-142 8-88 (118)
7 1fli_A FLI-1; transcription/DN 87.1 0.36 1.2E-05 41.3 3.0 61 70-130 7-68 (98)
8 1hbx_G ETS-domain protein ELK- 86.4 0.46 1.6E-05 43.7 3.5 74 70-143 7-85 (157)
9 1awc_A Protein (GA binding pro 86.3 0.69 2.4E-05 40.4 4.4 70 73-142 5-79 (110)
10 3jtg_A ETS-related transcripti 85.6 0.84 2.9E-05 39.3 4.6 72 71-142 7-85 (103)
11 1bc8_C SAP-1, protein (SAP-1 E 83.8 0.53 1.8E-05 39.9 2.4 74 70-143 6-84 (93)
12 2jee_A YIIU; FTSZ, septum, coi 83.2 6.1 0.00021 32.7 8.5 41 183-223 25-65 (81)
13 2nny_A C-ETS-1 protein, P54; p 83.1 1 3.6E-05 41.9 4.3 77 66-142 62-143 (171)
14 1gvj_A C-ETS-1 protein, P54; t 83.0 0.86 2.9E-05 41.6 3.7 79 65-143 36-119 (146)
15 1wwx_A E74-like factor 5 ESE-2 76.0 2 6.8E-05 37.3 3.5 76 66-142 6-88 (107)
16 1yo5_C SAM pointed domain cont 71.1 1.7 5.9E-05 37.0 1.9 74 68-141 10-91 (97)
17 1deb_A APC protein, adenomatou 69.8 19 0.00065 27.4 7.1 40 182-221 7-46 (54)
18 2lf8_A Transcription factor ET 71.5 1 3.6E-05 40.2 0.0 57 73-129 9-67 (128)
19 2yy0_A C-MYC-binding protein; 63.4 12 0.00043 28.3 5.1 30 185-214 19-48 (53)
20 1pue_E Protein (transcription 63.3 3.2 0.00011 34.8 2.0 69 73-142 6-83 (89)
21 3hnw_A Uncharacterized protein 61.2 30 0.001 30.8 8.1 42 186-227 83-124 (138)
22 4etp_A Kinesin-like protein KA 57.7 30 0.001 35.6 8.6 50 186-235 4-53 (403)
23 1wt6_A Myotonin-protein kinase 57.0 29 0.00098 28.7 6.6 41 182-222 28-68 (81)
24 4dzn_A Coiled-coil peptide CC- 56.5 14 0.00048 25.1 3.8 24 183-206 7-30 (33)
25 3m48_A General control protein 55.6 13 0.00043 26.0 3.5 26 181-206 3-28 (33)
26 3i00_A HIP-I, huntingtin-inter 52.4 82 0.0028 27.5 9.2 34 184-217 14-47 (120)
27 1a93_B MAX protein, coiled coi 51.7 20 0.00068 25.2 4.1 25 190-214 5-29 (34)
28 2wt7_A Proto-oncogene protein 51.1 29 0.001 26.7 5.5 28 182-209 27-54 (63)
29 1t2k_D Cyclic-AMP-dependent tr 50.3 27 0.00093 26.6 5.2 29 182-210 26-54 (61)
30 2xdj_A Uncharacterized protein 49.5 84 0.0029 25.8 8.3 43 195-237 23-65 (83)
31 2yy0_A C-MYC-binding protein; 49.1 29 0.00098 26.3 5.0 32 178-209 19-50 (53)
32 1kd8_B GABH BLL, GCN4 acid bas 48.5 21 0.00071 25.3 3.8 27 182-208 5-31 (36)
33 2wt7_B Transcription factor MA 44.8 42 0.0014 28.2 5.8 38 186-223 49-86 (90)
34 3e98_A GAF domain of unknown f 44.0 73 0.0025 30.7 8.4 75 142-243 42-116 (252)
35 3tnu_B Keratin, type II cytosk 42.9 1.4E+02 0.0049 25.7 9.3 41 183-223 34-74 (129)
36 2jee_A YIIU; FTSZ, septum, coi 41.5 1.5E+02 0.0051 24.4 9.2 36 182-217 10-45 (81)
37 3hnw_A Uncharacterized protein 40.7 1.5E+02 0.0053 26.2 9.3 39 185-223 75-113 (138)
38 1kd8_A GABH AIV, GCN4 acid bas 40.4 50 0.0017 23.4 4.7 27 182-208 5-31 (36)
39 3q8t_A Beclin-1; autophagy, AT 40.3 1.4E+02 0.0048 24.9 8.5 45 181-225 7-51 (96)
40 3c3g_A Alpha/beta peptide with 40.3 35 0.0012 23.8 3.8 25 182-206 4-28 (33)
41 1uo4_A General control protein 39.8 35 0.0012 23.9 3.8 25 182-206 5-29 (34)
42 1ci6_A Transcription factor AT 39.2 46 0.0016 25.7 4.9 27 182-208 27-53 (63)
43 3a7p_A Autophagy protein 16; c 39.1 2.1E+02 0.0072 26.1 10.0 68 185-252 68-136 (152)
44 3c3f_A Alpha/beta peptide with 38.2 39 0.0013 23.7 3.8 25 182-206 5-29 (34)
45 3a2a_A Voltage-gated hydrogen 38.1 82 0.0028 24.4 6.0 32 185-216 11-42 (58)
46 1jnm_A Proto-oncogene C-JUN; B 37.7 29 0.00099 26.5 3.6 31 181-211 25-55 (62)
47 1hjb_A Ccaat/enhancer binding 37.5 42 0.0015 27.8 4.8 14 188-201 46-59 (87)
48 4ani_A Protein GRPE; chaperone 36.8 1.1E+02 0.0037 29.3 8.1 40 185-224 59-98 (213)
49 2wq1_A General control protein 36.6 43 0.0015 23.3 3.8 25 182-206 4-28 (33)
50 3vem_A Helicase protein MOM1; 36.1 1.5E+02 0.0052 25.9 8.2 42 181-222 35-77 (115)
51 3oja_B Anopheles plasmodium-re 35.7 1.3E+02 0.0045 31.2 9.4 10 196-205 520-529 (597)
52 2hy6_A General control protein 35.5 45 0.0015 23.4 3.8 25 182-206 5-29 (34)
53 2w83_C C-JUN-amino-terminal ki 35.2 40 0.0014 27.6 4.1 23 184-206 36-58 (77)
54 3u06_A Protein claret segregat 35.2 1.2E+02 0.004 31.4 8.8 49 181-236 6-54 (412)
55 2oxj_A Hybrid alpha/beta pepti 34.8 47 0.0016 23.3 3.8 26 181-206 4-29 (34)
56 4etp_A Kinesin-like protein KA 34.3 86 0.0029 32.2 7.5 34 183-216 8-41 (403)
57 2bni_A General control protein 34.1 49 0.0017 23.2 3.8 25 182-206 5-29 (34)
58 3tnu_A Keratin, type I cytoske 33.9 1.5E+02 0.005 25.7 7.9 38 185-222 38-75 (131)
59 2aze_A Transcription factor DP 33.8 1.1E+02 0.0037 28.1 7.2 25 185-209 5-29 (155)
60 4dzn_A Coiled-coil peptide CC- 32.3 85 0.0029 21.3 4.6 22 186-207 3-24 (33)
61 3t97_B Nuclear pore complex pr 31.9 1.4E+02 0.0047 23.7 6.6 34 196-229 14-47 (65)
62 2xu6_A MDV1 coiled coil; prote 31.9 55 0.0019 26.5 4.4 42 182-223 25-66 (72)
63 3na7_A HP0958; flagellar bioge 31.7 1.5E+02 0.0051 28.2 8.3 49 181-229 35-83 (256)
64 2dgc_A Protein (GCN4); basic d 31.6 36 0.0012 26.4 3.2 26 182-207 34-59 (63)
65 3uux_B Mitochondrial division 31.4 1.9E+02 0.0065 28.2 8.9 65 187-251 151-215 (242)
66 3na7_A HP0958; flagellar bioge 31.4 1.3E+02 0.0046 28.5 8.0 21 185-205 53-73 (256)
67 1jcd_A Major outer membrane li 31.0 1.5E+02 0.005 22.5 6.4 42 182-223 8-49 (52)
68 2wt7_B Transcription factor MA 30.6 45 0.0015 28.0 3.8 16 146-161 18-33 (90)
69 1wle_A Seryl-tRNA synthetase; 30.6 1.6E+02 0.0055 31.3 9.0 89 144-234 43-144 (501)
70 2v66_B Nuclear distribution pr 30.1 2.3E+02 0.0077 24.5 8.3 25 197-221 40-64 (111)
71 4e61_A Protein BIM1; EB1-like 29.7 2.2E+02 0.0077 24.5 8.1 30 183-212 9-38 (106)
72 3tnu_A Keratin, type I cytoske 29.5 2.2E+02 0.0074 24.6 8.3 45 181-228 48-92 (131)
73 2dq0_A Seryl-tRNA synthetase; 29.1 1.1E+02 0.0039 31.9 7.5 59 178-236 38-99 (455)
74 3uux_B Mitochondrial division 29.0 90 0.0031 30.5 6.2 58 179-236 157-214 (242)
75 1ic2_A Tropomyosin alpha chain 28.9 2E+02 0.007 22.8 7.4 9 215-223 43-51 (81)
76 3tnu_B Keratin, type II cytosk 28.7 2.3E+02 0.0078 24.3 8.3 44 181-227 46-89 (129)
77 3viq_B Mating-type switching p 28.6 1.5E+02 0.0052 24.6 6.6 59 181-239 4-67 (85)
78 1wrd_A TOM1, target of MYB pro 28.4 1.3E+02 0.0046 25.2 6.5 68 183-253 11-79 (103)
79 3ghg_A Fibrinogen alpha chain; 27.8 81 0.0028 34.1 6.1 17 226-242 179-195 (562)
80 3he5_B Synzip2; heterodimeric 27.5 1.6E+02 0.0054 21.8 5.8 18 183-200 8-25 (52)
81 3q8t_A Beclin-1; autophagy, AT 27.5 2.3E+02 0.0078 23.5 7.7 28 182-209 22-49 (96)
82 3qne_A Seryl-tRNA synthetase, 27.2 1.5E+02 0.005 31.6 8.0 57 178-234 40-99 (485)
83 1nkp_A C-MYC, MYC proto-oncoge 27.0 1E+02 0.0034 25.2 5.3 31 186-216 53-83 (88)
84 3u06_A Protein claret segregat 26.9 1.3E+02 0.0046 31.0 7.5 36 193-228 4-39 (412)
85 1lwu_C Fibrinogen gamma chain; 26.7 1.6E+02 0.0056 29.6 7.9 12 457-468 304-315 (323)
86 1nkp_B MAX protein, MYC proto- 26.5 65 0.0022 25.7 4.1 26 186-211 48-73 (83)
87 4emc_A Monopolin complex subun 26.5 1.9E+02 0.0064 27.3 7.7 33 187-219 22-54 (190)
88 3kqg_A Langerin, C-type lectin 26.2 79 0.0027 27.6 4.9 13 183-195 4-16 (182)
89 4e61_A Protein BIM1; EB1-like 25.7 3.2E+02 0.011 23.5 8.8 25 185-209 18-42 (106)
90 3ra3_B P2F; coiled coil domain 24.9 55 0.0019 21.5 2.6 17 188-204 3-19 (28)
91 2r2v_A GCN4 leucine zipper; co 24.7 89 0.0031 21.9 3.8 25 182-206 5-29 (34)
92 3q0x_A Centriole protein; cent 24.7 2.3E+02 0.0078 27.3 8.1 48 178-225 164-211 (228)
93 1lwu_C Fibrinogen gamma chain; 24.4 1.6E+02 0.0054 29.8 7.3 6 333-338 150-155 (323)
94 1bg1_A Protein (transcription 24.1 1.4E+02 0.0048 32.7 7.2 36 179-214 14-49 (596)
95 1nlw_A MAD protein, MAX dimeri 24.0 89 0.003 25.2 4.4 27 186-212 48-74 (80)
96 3cvf_A Homer-3, homer protein 24.0 3E+02 0.01 22.5 7.5 21 185-205 13-33 (79)
97 3vp9_A General transcriptional 24.0 1.4E+02 0.0049 25.1 5.7 22 212-233 49-70 (92)
98 3ra3_A P1C; coiled coil domain 23.3 47 0.0016 21.9 2.1 20 189-208 4-23 (28)
99 1gu4_A CAAT/enhancer binding p 23.0 57 0.002 26.5 3.0 10 190-199 48-57 (78)
100 3cvf_A Homer-3, homer protein 22.5 1.5E+02 0.0053 24.2 5.5 39 183-221 18-56 (79)
101 3cue_D Transport protein parti 22.5 52 0.0018 30.8 3.1 64 67-131 85-157 (193)
102 1lrz_A FEMA, factor essential 22.2 2.5E+02 0.0087 28.3 8.5 46 185-230 247-298 (426)
103 2xdj_A Uncharacterized protein 22.1 3.2E+02 0.011 22.2 8.7 23 200-222 21-43 (83)
104 1gk4_A Vimentin; intermediate 21.7 3.1E+02 0.011 21.9 8.6 39 186-227 2-40 (84)
105 4emc_A Monopolin complex subun 21.4 2.6E+02 0.009 26.3 7.6 38 182-219 24-61 (190)
106 3a7p_A Autophagy protein 16; c 21.1 3.5E+02 0.012 24.7 8.1 47 182-228 72-125 (152)
107 2v71_A Nuclear distribution pr 21.1 4.7E+02 0.016 24.5 9.3 57 183-239 93-149 (189)
108 1l8d_A DNA double-strand break 21.0 2.1E+02 0.0071 23.5 6.3 27 191-217 9-35 (112)
109 2j5u_A MREC protein; bacterial 20.7 50 0.0017 31.9 2.7 16 385-400 211-226 (255)
110 3u1c_A Tropomyosin alpha-1 cha 20.7 3.3E+02 0.011 22.6 7.4 12 213-224 44-55 (101)
111 3v86_A De novo design helix; c 20.6 86 0.0029 20.5 2.9 22 183-204 5-26 (27)
112 2zqm_A Prefoldin beta subunit 20.5 2.8E+02 0.0096 22.6 7.0 39 185-223 70-108 (117)
113 1dh3_A Transcription factor CR 20.4 71 0.0024 24.1 2.9 23 183-205 27-49 (55)
114 1deq_A Fibrinogen (alpha chain 20.1 2.8E+02 0.0097 28.8 8.2 39 182-220 117-155 (390)
115 1x8y_A Lamin A/C; structural p 20.1 1.5E+02 0.0053 24.0 5.1 21 186-206 4-24 (86)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=100.00 E-value=1.3e-38 Score=275.54 Aligned_cols=95 Identities=45% Similarity=0.857 Sum_probs=91.5
Q ss_pred CCCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeec----------
Q 046676 66 NPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKID---------- 135 (487)
Q Consensus 66 ~~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~---------- 135 (487)
.++|+|+.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||||+||+|||||||+|||||+.
T Consensus 2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~ 81 (106)
T 1hks_A 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD 81 (106)
T ss_dssp TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence 4688999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCceeEEccccccCchhhhcccccc
Q 046676 136 TDRWEFANEAFQRGRRHLLKNIRRR 160 (487)
Q Consensus 136 ~d~~eF~h~~F~Rg~p~LL~~IkRk 160 (487)
++.|+|+|++|+||+|+||.+|+||
T Consensus 82 ~~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 82 RDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred CCceEEECcCccCcCHHHHhhCcCC
Confidence 4789999999999999999999997
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=9.3e-38 Score=277.97 Aligned_cols=101 Identities=46% Similarity=0.839 Sum_probs=95.6
Q ss_pred CCCCCCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeec-------
Q 046676 63 LHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKID------- 135 (487)
Q Consensus 63 ~~~~~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~------- 135 (487)
.....+++||.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||||+||+||+||||+|||||+.
T Consensus 12 ~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~ 91 (125)
T 2ldu_A 12 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGL 91 (125)
T ss_dssp CSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSS
T ss_pred ccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeecccccc
Confidence 4556789999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ----CCceeEEccccccCchhhhccccccCCC
Q 046676 136 ----TDRWEFANEAFQRGRRHLLKNIRRRKSP 163 (487)
Q Consensus 136 ----~d~~eF~h~~F~Rg~p~LL~~IkRkk~~ 163 (487)
++.|+|+|++|+||+|+||.+|+||++.
T Consensus 92 ~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~ 123 (125)
T 2ldu_A 92 VKPERDDTEFQHPCFLRGQEQLLENIKRKVTS 123 (125)
T ss_dssp SSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred ccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence 4689999999999999999999999864
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.97 E-value=6e-32 Score=233.33 Aligned_cols=84 Identities=44% Similarity=0.831 Sum_probs=77.6
Q ss_pred cCCCCCCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeec------
Q 046676 62 CLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKID------ 135 (487)
Q Consensus 62 ~~~~~~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~------ 135 (487)
..+.+.+|+|+.|||.||+|+++++||+|+++|++|||+|+++|+++|||+||||+||+||+||||+|||||+.
T Consensus 6 s~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~ 85 (102)
T 3hts_B 6 SVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGS 85 (102)
T ss_dssp ----CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC------
T ss_pred CCCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCc
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -----CCceeEEccc
Q 046676 136 -----TDRWEFANEA 145 (487)
Q Consensus 136 -----~d~~eF~h~~ 145 (487)
+++|||+|++
T Consensus 86 ~~~~~~~~wEF~n~~ 100 (102)
T 3hts_B 86 MLSNNDSRWEFENER 100 (102)
T ss_dssp ---CCSCCEEEEECC
T ss_pred ccCCCcCCeEecCCC
Confidence 6799999986
No 4
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=92.47 E-value=0.14 Score=44.47 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=57.1
Q ss_pred CChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc---cc-eeecCCceeEE
Q 046676 68 IPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY---GF-RKIDTDRWEFA 142 (487)
Q Consensus 68 ~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y---GF-rKv~~d~~eF~ 142 (487)
......-|.++|+|+++.++|+|...+..|.+.|+++.++.--.+ -=..-||..+-|-|..| |. +||...+..|.
T Consensus 11 ~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vYk 90 (106)
T 4avp_A 11 SLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK 90 (106)
T ss_dssp CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEEE
T ss_pred cEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEEE
Confidence 344566678999999999999999988899999999888743221 11366899999999887 44 67776666665
No 5
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=92.45 E-value=0.13 Score=44.37 Aligned_cols=74 Identities=22% Similarity=0.352 Sum_probs=55.3
Q ss_pred hhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc---cc-eeecCCceeEEc
Q 046676 70 PFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY---GF-RKIDTDRWEFAN 143 (487)
Q Consensus 70 ~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y---GF-rKv~~d~~eF~h 143 (487)
....-|.++|+|+++.++|+|...+..|.+.|+++.++.--.+ -=..-||..+-|-|..| |. +||...+..|..
T Consensus 9 ~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYkF 87 (102)
T 2ypr_A 9 QLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRF 87 (102)
T ss_dssp CHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEEE
T ss_pred eHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence 3555677999999999999999888999999999888743221 11366899999999887 33 666666666653
No 6
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.66 E-value=0.38 Score=42.48 Aligned_cols=75 Identities=23% Similarity=0.393 Sum_probs=56.2
Q ss_pred CChhHHHHHHhhcCCCCCCeeEEcC-CCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc---cc-eeecCCceeE
Q 046676 68 IPPFLAKTFDLVDDTSLDPIISWGS-TGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY---GF-RKIDTDRWEF 141 (487)
Q Consensus 68 ~p~Fl~KLy~mVedp~~~~IIsWs~-~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y---GF-rKv~~d~~eF 141 (487)
....-.-|.++|.|+++.++|+|.. ++.-|.+.|+++.++.--.+ -=..-||...-|-|..| |+ +||...+..|
T Consensus 8 ~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~vY 87 (118)
T 2dao_A 8 CRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLF 87 (118)
T ss_dssp CCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSEE
T ss_pred chHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEEE
Confidence 3445567789999999999999987 45689999999888853322 11356899999999988 44 6666666666
Q ss_pred E
Q 046676 142 A 142 (487)
Q Consensus 142 ~ 142 (487)
.
T Consensus 88 ~ 88 (118)
T 2dao_A 88 R 88 (118)
T ss_dssp E
T ss_pred E
Confidence 5
No 7
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=87.06 E-value=0.36 Score=41.31 Aligned_cols=61 Identities=25% Similarity=0.364 Sum_probs=46.6
Q ss_pred hhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhcccc
Q 046676 70 PFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYG 130 (487)
Q Consensus 70 ~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YG 130 (487)
..-.-|.++|+|+++.++|+|...+.-|.+.|+++.++.--.+ -=..-||...-|-|..|-
T Consensus 7 ~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY 68 (98)
T 1fli_A 7 QLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY 68 (98)
T ss_dssp CSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred eHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence 3455667889999999999999888899999999888753222 113567888888887773
No 8
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=86.39 E-value=0.46 Score=43.74 Aligned_cols=74 Identities=20% Similarity=0.371 Sum_probs=56.0
Q ss_pred hhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc---cc-eeecCCceeEEc
Q 046676 70 PFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY---GF-RKIDTDRWEFAN 143 (487)
Q Consensus 70 ~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y---GF-rKv~~d~~eF~h 143 (487)
....-|.++|.|+++.++|+|...+.-|.+.|+++.++.--.+ -=..-||...-|-|..| |+ +||...+..|..
T Consensus 7 ~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF 85 (157)
T 1hbx_G 7 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 85 (157)
T ss_dssp CHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEE
T ss_pred cHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEee
Confidence 3455677999999999999998877799999999988854332 11456899999999887 33 556666666664
No 9
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=86.28 E-value=0.69 Score=40.36 Aligned_cols=70 Identities=21% Similarity=0.280 Sum_probs=51.8
Q ss_pred HHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccccc----eeecCCceeEE
Q 046676 73 AKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYGF----RKIDTDRWEFA 142 (487)
Q Consensus 73 ~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YGF----rKv~~d~~eF~ 142 (487)
.-|.++|+|+++.++|+|...+.-|.+.|+++.++.--.+ -=..-||...-|-|..|.= +||...+..|.
T Consensus 5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~ 79 (110)
T 1awc_A 5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK 79 (110)
T ss_dssp HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEe
Confidence 3467899999999999999988899999999988754332 1134578888898888743 44555555555
No 10
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=85.64 E-value=0.84 Score=39.32 Aligned_cols=72 Identities=11% Similarity=0.252 Sum_probs=50.8
Q ss_pred hHHHHHHhhcCCC-CCCeeEEcCC-CCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc---cc-eeecCCceeEE
Q 046676 71 FLAKTFDLVDDTS-LDPIISWGST-GESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY---GF-RKIDTDRWEFA 142 (487)
Q Consensus 71 Fl~KLy~mVedp~-~~~IIsWs~~-G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y---GF-rKv~~d~~eF~ 142 (487)
...-|.++|.|++ ..++|+|... ...|.+.|+++.++.--.+ -=..-||..+-|-|..| |. +||...+..|.
T Consensus 7 LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~ 85 (103)
T 3jtg_A 7 LWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK 85 (103)
T ss_dssp HHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEE
T ss_pred HHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEE
Confidence 4455678899998 5689999874 5589999999888742211 11467899999999887 33 55555556555
No 11
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=83.76 E-value=0.53 Score=39.94 Aligned_cols=74 Identities=20% Similarity=0.371 Sum_probs=55.9
Q ss_pred hhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc---cc-eeecCCceeEEc
Q 046676 70 PFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY---GF-RKIDTDRWEFAN 143 (487)
Q Consensus 70 ~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y---GF-rKv~~d~~eF~h 143 (487)
..-.-|.++|.|+++.++|+|...+.-|.+.|+++.++.--.+ -=..-||...-|-|..| |. +||...+..|..
T Consensus 6 ~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~F 84 (93)
T 1bc8_C 6 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 84 (93)
T ss_dssp CHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEEE
T ss_pred cHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence 3455677999999999999999877799999999988853321 11456899999999887 33 556666667664
No 12
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.18 E-value=6.1 Score=32.71 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
+.-|++.||.++..|.+|...++........+.+++.+...
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44577777777777777777766555544444444444333
No 13
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=83.09 E-value=1 Score=41.94 Aligned_cols=77 Identities=26% Similarity=0.327 Sum_probs=57.8
Q ss_pred CCCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccccc----eeecCCcee
Q 046676 66 NPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYGF----RKIDTDRWE 140 (487)
Q Consensus 66 ~~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YGF----rKv~~d~~e 140 (487)
++......-|.++|.|+...++|+|...+..|.+.|+++.++.--.+ -=..-||...-|-|..|-= +||...+..
T Consensus 62 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrlv 141 (171)
T 2nny_A 62 SGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV 141 (171)
T ss_dssp CSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTTE
T ss_pred CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeEE
Confidence 34455667788999999999999999998899999999998854322 1135578889999988844 356556666
Q ss_pred EE
Q 046676 141 FA 142 (487)
Q Consensus 141 F~ 142 (487)
|.
T Consensus 142 Y~ 143 (171)
T 2nny_A 142 YR 143 (171)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 14
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=83.05 E-value=0.86 Score=41.57 Aligned_cols=79 Identities=27% Similarity=0.336 Sum_probs=59.3
Q ss_pred CCCCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccccc----eeecCCce
Q 046676 65 GNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYGF----RKIDTDRW 139 (487)
Q Consensus 65 ~~~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YGF----rKv~~d~~ 139 (487)
+++....-.-|.++|+|++..++|+|...+..|.+.|+++.++.--.+ -=..-||...-|-|..|-= +||...+.
T Consensus 36 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl 115 (146)
T 1gvj_A 36 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY 115 (146)
T ss_dssp TCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSS
T ss_pred CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeE
Confidence 344555677788999999999999999998899999999998854322 1135678999999988843 46666666
Q ss_pred eEEc
Q 046676 140 EFAN 143 (487)
Q Consensus 140 eF~h 143 (487)
.|..
T Consensus 116 vY~F 119 (146)
T 1gvj_A 116 VYRF 119 (146)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6653
No 15
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=75.95 E-value=2 Score=37.31 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=53.5
Q ss_pred CCCChhHHHHHHhhcCCC-CCCeeEEcC-CCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhcccc---c-eeecCCc
Q 046676 66 NPIPPFLAKTFDLVDDTS-LDPIISWGS-TGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYG---F-RKIDTDR 138 (487)
Q Consensus 66 ~~~p~Fl~KLy~mVedp~-~~~IIsWs~-~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YG---F-rKv~~d~ 138 (487)
++......-|.++|.|++ ..++|+|.. +..-|.+.|+++.++.--.+ -=..-||...-|-|..|- + +||. .+
T Consensus 6 ~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv~-~r 84 (107)
T 1wwx_A 6 SGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD-RR 84 (107)
T ss_dssp CSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECCS-SS
T ss_pred CCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecc-ce
Confidence 344556777889999986 567999986 46789999999988853221 113568999999998883 2 5553 55
Q ss_pred eeEE
Q 046676 139 WEFA 142 (487)
Q Consensus 139 ~eF~ 142 (487)
..|.
T Consensus 85 lvY~ 88 (107)
T 1wwx_A 85 LVYK 88 (107)
T ss_dssp SEEE
T ss_pred EEEE
Confidence 5655
No 16
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=71.12 E-value=1.7 Score=37.04 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=52.4
Q ss_pred CChhHHHHHHhhcCCC-CCCeeEEcC-CCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccccc----eeec-CCce
Q 046676 68 IPPFLAKTFDLVDDTS-LDPIISWGS-TGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYGF----RKID-TDRW 139 (487)
Q Consensus 68 ~p~Fl~KLy~mVedp~-~~~IIsWs~-~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YGF----rKv~-~d~~ 139 (487)
....-.-|.++|.|++ +.++|+|.. .+.-|.+.|+++.++.--.+ -=..-||...-|-|..|-- +||. ..+.
T Consensus 10 ~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~~ii~Kv~~g~r~ 89 (97)
T 1yo5_C 10 PIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRL 89 (97)
T ss_dssp CCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTTTSEECCSSCCTT
T ss_pred eeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEeeccCCcEE
Confidence 3446667789999986 578999984 57789999999988853222 1235689999999988854 4454 3444
Q ss_pred eE
Q 046676 140 EF 141 (487)
Q Consensus 140 eF 141 (487)
.|
T Consensus 90 vY 91 (97)
T 1yo5_C 90 VY 91 (97)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 17
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=69.76 E-value=19 Score=27.43 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQR 221 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqR 221 (487)
.|-.++|.||+++..|.+||.+--.+...++.+-..|.+-
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKev 46 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEV 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 4566899999999999999988777766666555444433
No 18
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=71.48 E-value=1 Score=40.18 Aligned_cols=57 Identities=23% Similarity=0.458 Sum_probs=39.4
Q ss_pred HHHHHhhcCCCCCCeeEEcCC-CCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc
Q 046676 73 AKTFDLVDDTSLDPIISWGST-GESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY 129 (487)
Q Consensus 73 ~KLy~mVedp~~~~IIsWs~~-G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y 129 (487)
.-|.++|.|+++.++|+|... +.-|.+.|+++.++.--.+ -=..-||...-|-|..|
T Consensus 9 qFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyY 67 (128)
T 2lf8_A 9 DYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHY 67 (128)
Confidence 345688999999999999874 4589999998777632221 11234566666766666
No 19
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.45 E-value=12 Score=28.29 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASH 214 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~q 214 (487)
.+++.|+.++..|.+++..|+++...+..+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778777777777777776665554443
No 20
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=63.32 E-value=3.2 Score=34.82 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=48.3
Q ss_pred HHHHHhhcCCCCCCeeEEcC-CCCeEEEe--CCchhhhhhcCC--CCCCCChhhHHhhhcccc---c-eeecCCceeEE
Q 046676 73 AKTFDLVDDTSLDPIISWGS-TGESFVVW--DPLEFSRLILPR--NFKHNNFSSFVRQLNTYG---F-RKIDTDRWEFA 142 (487)
Q Consensus 73 ~KLy~mVedp~~~~IIsWs~-~G~sFvI~--d~~~F~k~VLPk--yFKh~nfsSFvRQLN~YG---F-rKv~~d~~eF~ 142 (487)
.-|.++|+|+++.++|+|.. +...|.+. |+++.++.--.+ -=..-||...-|-|..|. . +||. .+..|.
T Consensus 6 qFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii~Kv~-~r~vY~ 83 (89)
T 1pue_E 6 QFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK-KKLTYQ 83 (89)
T ss_dssp HHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS-STTEEE
T ss_pred HHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCceeecc-ceEEEe
Confidence 45678999999999999986 44568775 788888753322 112568999999998883 2 5554 455554
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.17 E-value=30 Score=30.79 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQ 227 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eq 227 (487)
+++.+.++...|..|++.++-+......++..+.+++..++.
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444333
No 22
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=57.71 E-value=30 Score=35.62 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSF 235 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsF 235 (487)
+++.|+.+...|.+++.+|+++...+..+++.+++++...++.-+++-+=
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~ 53 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNE 53 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555566667777777666655555433
No 23
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=56.95 E-value=29 Score=28.73 Aligned_cols=41 Identities=15% Similarity=0.412 Sum_probs=21.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRI 222 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRL 222 (487)
.+..|+...|..+..++.+|.+...+.+.+..+|+.+..++
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555444444
No 24
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=56.46 E-value=14 Score=25.15 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=13.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQ 206 (487)
+..||..||++..+|.-|+..|+|
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445566666666666666655554
No 25
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=55.58 E-value=13 Score=26.02 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.3
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQ 206 (487)
..|+..++.|-.++..|..|+.+|+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35788999999999999999998875
No 26
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=52.44 E-value=82 Score=27.51 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 046676 184 QGDIEQLRKERGMLMQEVVELHQQHRGTASHMEA 217 (487)
Q Consensus 184 e~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~ 217 (487)
+..|+.|+++...|..|+..++.+.+....+|+.
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~ 47 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKG 47 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999998888766555543
No 27
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=51.68 E-value=20 Score=25.20 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 046676 190 LRKERGMLMQEVVELHQQHRGTASH 214 (487)
Q Consensus 190 LK~ek~~L~qELvkLqQQQ~~~~~q 214 (487)
+++++.+..++|.+|+.|...++.|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHH
Confidence 3444444555555555444433333
No 28
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=51.09 E-value=29 Score=26.68 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=18.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHR 209 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~ 209 (487)
.|+.+++.|..++..|..++..|+.+..
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777766665543
No 29
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=50.31 E-value=27 Score=26.56 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=18.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRG 210 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~ 210 (487)
.|+.+++.|..++..|..++..|+.+...
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777666665443
No 30
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=49.52 E-value=84 Score=25.79 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 195 GMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLA 237 (487)
Q Consensus 195 ~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLa 237 (487)
..|.+.|..|+++...+.-+++.+.-.|..+.++|+.+..=|-
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666667777777776654443
No 31
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.12 E-value=29 Score=26.28 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=23.2
Q ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 178 AEKSGVQGDIEQLRKERGMLMQEVVELHQQHR 209 (487)
Q Consensus 178 ~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~ 209 (487)
++-..|..|++.||.....|..++.+|+.+..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455777888888888888888887777643
No 32
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=48.54 E-value=21 Score=25.32 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=22.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQH 208 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ 208 (487)
.|+..+|.|..++..|..|+.+|+.-.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 477889999999999999999887643
No 33
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=44.80 E-value=42 Score=28.18 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
++..|..++..|..|+..|+++...+...+..+.++++
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666655555555555554
No 34
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=43.97 E-value=73 Score=30.69 Aligned_cols=75 Identities=13% Similarity=0.202 Sum_probs=23.3
Q ss_pred EccccccCchhhhccccccCCCCccccCCCCCCCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046676 142 ANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQR 221 (487)
Q Consensus 142 ~h~~F~Rg~p~LL~~IkRkk~~~s~q~~s~~g~~~e~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqR 221 (487)
.||.|.-.+++||..++=.-+.. +. . +-.+-++++||.++..|+.++ ..|.+.
T Consensus 42 ~~PdFf~~~~~Ll~~L~lph~~~----~a-------V--SL~erQ~~~LR~r~~~Le~~L--------------~~Li~~ 94 (252)
T 3e98_A 42 QHPEFFVEHDELIPELRIPHQPG----DA-------V--SLVERQVRLLRERNIEMRHRL--------------SQLMDV 94 (252)
T ss_dssp ------------------------------------C--HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred hCCHHHhhCHHHHHhCCCCCCCC----Cc-------c--cHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence 69999999999999887533210 10 0 111223444444444444433 333333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCh
Q 046676 222 IHAAEQRQKQMVSFLAKLLQNP 243 (487)
Q Consensus 222 Lq~~EqrQqQMlsFLakvvqnP 243 (487)
-+.-++..+++..+..+++.-.
T Consensus 95 A~~Ne~l~~~~~~l~l~LL~a~ 116 (252)
T 3e98_A 95 ARENDRLFDKTRRLVLDLLDAT 116 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 3444445566666767776654
No 35
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.86 E-value=1.4e+02 Score=25.66 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
...||..|++....|..||..++.+...++..+..+.+++.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34577777777777777777777766666666666665554
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.50 E-value=1.5e+02 Score=24.44 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=22.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEA 217 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~ 217 (487)
.|+..|..+-.....|..|+..|+++...+.++.+.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666667777777766655554444
No 37
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.65 E-value=1.5e+02 Score=26.16 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
.+++.|..+...+..|+..|+.+.....-++..+.+.+.
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~ 113 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIK 113 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555444444444444444433
No 38
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=40.36 E-value=50 Score=23.41 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=22.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQH 208 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ 208 (487)
.|+..++.|-.++..|..|+.+|+.-.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 577889999999999999999887653
No 39
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=40.33 E-value=1.4e+02 Score=24.86 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=34.5
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
..++.++..|+.+-..|.+||..|..+...+..++..+.......
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456778888888888889999888888887777777665555443
No 40
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=40.28 E-value=35 Score=23.79 Aligned_cols=25 Identities=0% Similarity=0.154 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQ 206 (487)
.|+..+|.|-.++..|..|+.+|+.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4678899999999999999988864
No 41
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=39.82 E-value=35 Score=23.93 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=21.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQ 206 (487)
.|+..+|.|-.++..|..|+.+|+.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4778899999999999999988875
No 42
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.19 E-value=46 Score=25.71 Aligned_cols=27 Identities=19% Similarity=0.339 Sum_probs=15.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQH 208 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ 208 (487)
.++.+++.|..++..|..++..|+.+.
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666665555555443
No 43
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=39.07 E-value=2.1e+02 Score=26.11 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHhhh
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQ-NPAFLARLKQK 252 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvq-nP~fl~ql~~~ 252 (487)
..|+.|+.+...|..++..|......-...++.++.-+..+...-..+-.=+.++-. |...+.+++..
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777666666666666443332233333333333333222222223333333 34455555544
No 44
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=38.22 E-value=39 Score=23.68 Aligned_cols=25 Identities=8% Similarity=0.132 Sum_probs=20.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQ 206 (487)
.|+..+|.|-.++..|..|+.+|+.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4778889998888999999988764
No 45
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=38.12 E-value=82 Score=24.36 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASHME 216 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq 216 (487)
..+.+||.-+..|...+..|+.+-...++++.
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEie 42 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIE 42 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888887665443333333
No 46
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.66 E-value=29 Score=26.55 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=21.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGT 211 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~ 211 (487)
..|+.+++.|..++..|..++..|+.+...+
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777776665443
No 47
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.53 E-value=42 Score=27.85 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 046676 188 EQLRKERGMLMQEV 201 (487)
Q Consensus 188 E~LK~ek~~L~qEL 201 (487)
+.|..++..|..+|
T Consensus 46 ~~Le~EN~~Lr~~v 59 (87)
T 1hjb_A 46 LELTAENERLQKKV 59 (87)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 48
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=36.77 E-value=1.1e+02 Score=29.25 Aligned_cols=40 Identities=10% Similarity=0.181 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHA 224 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~ 224 (487)
.+++.|..+...|..++.+++.+..++...+..++.|...
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888999999999888888888888888864
No 49
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=36.64 E-value=43 Score=23.34 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=20.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQ 206 (487)
.|+..||.|-.++..|..|+.+|+.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4778899998888999999988764
No 50
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=36.08 E-value=1.5e+02 Score=25.88 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=21.7
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQH-RGTASHMEAINQRI 222 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ-~~~~~qmq~lnqRL 222 (487)
.-|..|+++|+++...+..--..-++|. ...+++|+.+.+++
T Consensus 35 DPL~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KY 77 (115)
T 3vem_A 35 DPFLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEF 77 (115)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999887665532221112221 23445555555544
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.73 E-value=1.3e+02 Score=31.25 Aligned_cols=10 Identities=10% Similarity=0.145 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 046676 196 MLMQEVVELH 205 (487)
Q Consensus 196 ~L~qELvkLq 205 (487)
.+..++.+++
T Consensus 520 ~~~~~~~~~~ 529 (597)
T 3oja_B 520 FKLRETQARR 529 (597)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 3333333333
No 52
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=35.48 E-value=45 Score=23.35 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQ 206 (487)
.|+..+|.|-..+..|..|+.+|+.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4778899999999999999988864
No 53
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.24 E-value=40 Score=27.63 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 046676 184 QGDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 184 e~EIE~LK~ek~~L~qELvkLqQ 206 (487)
-..++.|-.++.+|..|+..+++
T Consensus 36 I~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 36 IAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 54
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=35.16 E-value=1.2e+02 Score=31.41 Aligned_cols=49 Identities=12% Similarity=0.287 Sum_probs=22.9
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFL 236 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFL 236 (487)
..|+.|++.|++....|.+++.++ ..+++.+.++|...+..-+++-+-|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~-------~~~~~~~~~~l~~~~~~rr~l~n~~ 54 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQ-------AAELETCKEQLFQSNMERKELHNTV 54 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444444433 3344444455544444444444433
No 55
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.79 E-value=47 Score=23.27 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=21.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQ 206 (487)
..|+..++.|-.++..|..|+.+|+.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 35778889998889999999888764
No 56
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.27 E-value=86 Score=32.24 Aligned_cols=34 Identities=9% Similarity=0.164 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHME 216 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq 216 (487)
++.+++.|+++...|.+++.+++.+.+.+.+++.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666555555555544443
No 57
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=34.15 E-value=49 Score=23.20 Aligned_cols=25 Identities=8% Similarity=0.323 Sum_probs=21.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQ 206 (487)
.|+..+|.|-.++..|..|+.+|+.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4778899999999999999988864
No 58
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.86 E-value=1.5e+02 Score=25.69 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRI 222 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRL 222 (487)
.||..|++....|..||..++.+...++..+..+.+++
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555555555555555555544444444444444443
No 59
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=33.77 E-value=1.1e+02 Score=28.10 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHR 209 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~ 209 (487)
.|++.|+.++..++..|.+-+++.+
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~Lq 29 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQ 29 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777776665554433333
No 60
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=32.30 E-value=85 Score=21.32 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQ 207 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQ 207 (487)
||..||++..+|..|+..|+=+
T Consensus 3 eiaalkqeiaalkkeiaalkfe 24 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777666666666665543
No 61
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=31.90 E-value=1.4e+02 Score=23.74 Aligned_cols=34 Identities=12% Similarity=0.369 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046676 196 MLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQ 229 (487)
Q Consensus 196 ~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQ 229 (487)
.+..||.+|++++.++..++....+++..+..|.
T Consensus 14 ~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRi 47 (65)
T 3t97_B 14 IISEDISELQKNQTTTMAKIAQYKRKLMDLSHRT 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4567788888888777777777776666555543
No 62
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=31.86 E-value=55 Score=26.50 Aligned_cols=42 Identities=17% Similarity=0.446 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
.++..|++|+.-+..+..-|+.+.|....+++.+..+..||.
T Consensus 25 EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle 66 (72)
T 2xu6_A 25 DIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLD 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555544443
No 63
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.74 E-value=1.5e+02 Score=28.23 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=28.6
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQ 229 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQ 229 (487)
..++.++..++.....+..++..++.++.....++..+..|+...+.++
T Consensus 35 ~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 35 DKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555666666666666666666666666665555443
No 64
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.61 E-value=36 Score=26.44 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=17.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQ 207 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQ 207 (487)
.|+.+++.|+.++..|..|+..|+++
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777666666554
No 65
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=31.45 E-value=1.9e+02 Score=28.23 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhh
Q 046676 187 IEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQ 251 (487)
Q Consensus 187 IE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvqnP~fl~ql~~ 251 (487)
+..|++++..+..++.-|.=+...+..++..+-.+|+.+...++.++.=||.+=++-.||..-+.
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~ 215 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLK 215 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34567777777777666665555566677777777777777778888888888888777776654
No 66
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.44 E-value=1.3e+02 Score=28.54 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELH 205 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLq 205 (487)
.+++.++++...+..++..++
T Consensus 53 ~~l~d~~~~~~~~e~~i~~~~ 73 (256)
T 3na7_A 53 EEKLALKLQVSKNEQTLQDTN 73 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 67
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.04 E-value=1.5e+02 Score=22.46 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
.|..+|..|..+...|..++..|+...+....+-.--|+||.
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677777777777777777777766666666666677764
No 68
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.60 E-value=45 Score=27.98 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=9.7
Q ss_pred cccCchhhhccccccC
Q 046676 146 FQRGRRHLLKNIRRRK 161 (487)
Q Consensus 146 F~Rg~p~LL~~IkRkk 161 (487)
+.+.....|+.++|+-
T Consensus 18 ls~eev~~lKq~RRtl 33 (90)
T 2wt7_B 18 FTKDEVIRLKQKRRTL 33 (90)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 4455566677777754
No 69
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=30.59 E-value=1.6e+02 Score=31.32 Aligned_cols=89 Identities=11% Similarity=0.069 Sum_probs=52.4
Q ss_pred cccccCchhhh-ccccccCCCCcc-ccCCCCCCCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHHH-----------Hh
Q 046676 144 EAFQRGRRHLL-KNIRRRKSPQSQ-QIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQH-----------RG 210 (487)
Q Consensus 144 ~~F~Rg~p~LL-~~IkRkk~~~s~-q~~s~~g~~~e~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ-----------~~ 210 (487)
-.|.|.+++.+ .++++|+-.... .... --..+..+..+..+++.|+.+++.+..+|.+++... ..
T Consensus 43 ~~~ir~n~~~v~~~l~~R~~~~~~~~~~~--~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~ 120 (501)
T 1wle_A 43 MESLCAYPEDAARALDLRKGELRSKDLPG--IISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQS 120 (501)
T ss_dssp HHHHHHSHHHHHHHHHHHTCSCCGGGHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcCCCcchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHH
Confidence 45667778876 667766531000 0000 001223455667788888888888888887765432 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 211 TASHMEAINQRIHAAEQRQKQMVS 234 (487)
Q Consensus 211 ~~~qmq~lnqRLq~~EqrQqQMls 234 (487)
+..+++.+.+++..++....++-.
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~ 144 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEE 144 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777666555443
No 70
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=30.11 E-value=2.3e+02 Score=24.55 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 046676 197 LMQEVVELHQQHRGTASHMEAINQR 221 (487)
Q Consensus 197 L~qELvkLqQQQ~~~~~qmq~lnqR 221 (487)
|..|+..|+.....+..+++.+.+.
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444333
No 71
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=29.70 E-value=2.2e+02 Score=24.46 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTA 212 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~ 212 (487)
+..|+...+.+...|.+++..|+.....++
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444433
No 72
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.47 E-value=2.2e+02 Score=24.59 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=30.8
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQR 228 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eqr 228 (487)
+.|+.|++.++..+..|...|.+++++... ++..++..|..+|..
T Consensus 48 q~L~~el~~l~~~~~sLE~~l~e~e~~~~~---~l~~~q~~i~~lE~e 92 (131)
T 3tnu_A 48 QNLEIELQSQLSMKASLENSLEETKGRYCM---QLAQIQEMIGSVEEQ 92 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 467888999999999999989888776643 334444444444433
No 73
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=29.09 E-value=1.1e+02 Score=31.91 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=39.8
Q ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 178 AEKSGVQGDIEQLRKERGMLMQEVVELHQQ---HRGTASHMEAINQRIHAAEQRQKQMVSFL 236 (487)
Q Consensus 178 ~~~~~Le~EIE~LK~ek~~L~qELvkLqQQ---Q~~~~~qmq~lnqRLq~~EqrQqQMlsFL 236 (487)
..+..+..+++.|+.+++.+..++.+++.. ...+..+++.+.+++..++.....+-.=|
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888888888766532 23445677777777777777665554433
No 74
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=29.01 E-value=90 Score=30.51 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=37.1
Q ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 179 EKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFL 236 (487)
Q Consensus 179 ~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFL 236 (487)
.+..+..+++.|--.+.+...||.++-.+...+...-+.+-+||..+|+..-.+-+-|
T Consensus 157 ~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL 214 (242)
T 3uux_B 157 FSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNL 214 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3445666777777777777788877777666554444556677777776654444433
No 75
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.95 E-value=2e+02 Score=22.81 Aligned_cols=9 Identities=11% Similarity=0.534 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 046676 215 MEAINQRIH 223 (487)
Q Consensus 215 mq~lnqRLq 223 (487)
+..|+.+++
T Consensus 43 v~~L~kKiq 51 (81)
T 1ic2_A 43 LVALQKKLK 51 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 76
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.71 E-value=2.3e+02 Score=24.32 Aligned_cols=44 Identities=11% Similarity=0.290 Sum_probs=30.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQ 227 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eq 227 (487)
+.|+.|++.|+..+..|...|.+++++... ++..++..|..+|.
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e~~~~~---~l~~~q~~i~~lE~ 89 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAEQRGEL---ALKDARNKLAELEE 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 467788999999999999988888776643 33444444444443
No 77
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=28.58 E-value=1.5e+02 Score=24.60 Aligned_cols=59 Identities=8% Similarity=0.122 Sum_probs=34.8
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 046676 181 SGVQGDIEQLRKERGMLMQEVVELHQQHRGT--ASHMEAINQ---RIHAAEQRQKQMVSFLAKL 239 (487)
Q Consensus 181 ~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~--~~qmq~lnq---RLq~~EqrQqQMlsFLakv 239 (487)
..++.++..|+.+...|.+++..++.+.... ...++...+ .+..+.+--+.++..+|..
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~ 67 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEH 67 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4567788899888888988888887643221 111222222 2233455556666666655
No 78
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=28.39 E-value=1.3e+02 Score=25.16 Aligned_cols=68 Identities=12% Similarity=0.266 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhhh
Q 046676 183 VQGDIEQLRKERGMLMQEVVE-LHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKK 253 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvk-LqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvqnP~fl~ql~~~~ 253 (487)
+..+++..+.. ..|+.|+.. +.... ......+.+.+.+..|+.-|.+++.++.. ..+...+..+++-.
T Consensus 11 ~~~el~~v~~n-~~lL~EML~~~~p~~-~~~~~~el~~eL~~~c~~~qp~i~~li~~-~~dee~l~~lL~~N 79 (103)
T 1wrd_A 11 LRSELEMVSGN-VRVMSEMLTELVPTQ-AEPADLELLQELNRTCRAMQQRVLELIPQ-IANEQLTEELLIVN 79 (103)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHSCTTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHhcCCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHhh
Confidence 34567666553 344455532 21111 11123345566666777777777777764 48888888887654
No 79
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.83 E-value=81 Score=34.12 Aligned_cols=17 Identities=41% Similarity=0.427 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhcC
Q 046676 226 EQRQKQMVSFLAKLLQN 242 (487)
Q Consensus 226 EqrQqQMlsFLakvvqn 242 (487)
+..|+||.+..++=++.
T Consensus 179 ~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 179 EDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhhcccCC
Confidence 34566666655554443
No 80
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.55 E-value=1.6e+02 Score=21.76 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=10.4
Q ss_pred chHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQE 200 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qE 200 (487)
+...|.+||+++..|...
T Consensus 8 lrkkiarlkkdnlqlerd 25 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERD 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhh
Confidence 345666676666555443
No 81
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=27.49 E-value=2.3e+02 Score=23.51 Aligned_cols=28 Identities=11% Similarity=0.338 Sum_probs=17.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHR 209 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~ 209 (487)
.+..+++.|-+++..|..||..++.+..
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~ 49 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAE 49 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445666676777777777666655543
No 82
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.16 E-value=1.5e+02 Score=31.59 Aligned_cols=57 Identities=9% Similarity=0.127 Sum_probs=38.9
Q ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 178 AEKSGVQGDIEQLRKERGMLMQEVVELHQQH---RGTASHMEAINQRIHAAEQRQKQMVS 234 (487)
Q Consensus 178 ~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ---~~~~~qmq~lnqRLq~~EqrQqQMls 234 (487)
..+..+..+++.|+.+++.+..++-.++..- ..+..+++.+.+++..++....++-.
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~ 99 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADK 99 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888888887765422 34556777777777777766555543
No 83
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.99 E-value=1e+02 Score=25.21 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHME 216 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq 216 (487)
-|..|..+...+..++..|++++..+..+++
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665554444443
No 84
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.95 E-value=1.3e+02 Score=30.99 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046676 193 ERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQR 228 (487)
Q Consensus 193 ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eqr 228 (487)
++..|..|+.+++++...+.++++.+...+..++++
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888877777777777766655543
No 85
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.70 E-value=1.6e+02 Score=29.63 Aligned_cols=12 Identities=8% Similarity=-0.069 Sum_probs=6.4
Q ss_pred cccCCCCCCCCC
Q 046676 457 IDLWSADEPPFV 468 (487)
Q Consensus 457 ~~~~~~~~~~~~ 468 (487)
+--+|.+-.+-+
T Consensus 304 M~IRp~~~~~~~ 315 (323)
T 1lwu_C 304 MKLLPMGRDLSG 315 (323)
T ss_dssp EEEEESSCCCCC
T ss_pred EEEeeCCCCCCC
Confidence 344666655544
No 86
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.53 E-value=65 Score=25.66 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGT 211 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~ 211 (487)
-|..|+.+...|..|+..|+++...+
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554433
No 87
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.47 E-value=1.9e+02 Score=27.33 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046676 187 IEQLRKERGMLMQEVVELHQQHRGTASHMEAIN 219 (487)
Q Consensus 187 IE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~ln 219 (487)
|..|..++..|.+++....++...+..+++.++
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444333333333333333
No 88
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=26.20 E-value=79 Score=27.56 Aligned_cols=13 Identities=15% Similarity=0.401 Sum_probs=2.0
Q ss_pred chHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERG 195 (487)
Q Consensus 183 Le~EIE~LK~ek~ 195 (487)
|..+|+.||++..
T Consensus 4 l~~~~~~l~~~~~ 16 (182)
T 3kqg_A 4 LNAQIPELKSDLE 16 (182)
T ss_dssp ---------CHHH
T ss_pred hhhhHHHHHHHHH
Confidence 4456666665544
No 89
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.74 E-value=3.2e+02 Score=23.50 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHR 209 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~ 209 (487)
.+++.|..+...|...+..|.++..
T Consensus 18 ~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 18 ETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444433
No 90
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.89 E-value=55 Score=21.53 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046676 188 EQLRKERGMLMQEVVEL 204 (487)
Q Consensus 188 E~LK~ek~~L~qELvkL 204 (487)
.+||+.+..|.||+..|
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 35555555666665544
No 91
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.72 E-value=89 Score=21.89 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQ 206 (487)
.++..+|.|-.++..|..|+.+|+.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4667888888888888888887764
No 92
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=24.68 E-value=2.3e+02 Score=27.34 Aligned_cols=48 Identities=6% Similarity=0.082 Sum_probs=37.0
Q ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046676 178 AEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225 (487)
Q Consensus 178 ~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~ 225 (487)
.-+..+...+..+|.+...|.++|.+.+.+...+..++.++++.+..+
T Consensus 164 ~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~ 211 (228)
T 3q0x_A 164 VVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888888888999999988888888888888777666543
No 93
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.36 E-value=1.6e+02 Score=29.76 Aligned_cols=6 Identities=17% Similarity=0.302 Sum_probs=2.7
Q ss_pred ccccCc
Q 046676 333 FQFENV 338 (487)
Q Consensus 333 ~~~~~~ 338 (487)
+|+|+|
T Consensus 150 LGle~i 155 (323)
T 1lwu_C 150 LGNEKI 155 (323)
T ss_dssp CCHHHH
T ss_pred ecccce
Confidence 344444
No 94
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=24.05 E-value=1.4e+02 Score=32.68 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=27.8
Q ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046676 179 EKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASH 214 (487)
Q Consensus 179 ~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~q 214 (487)
....++..++.||.....+.+++..|++.|....-+
T Consensus 14 k~~ei~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~ 49 (596)
T 1bg1_A 14 KQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFN 49 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345677788899988889999999998888765433
No 95
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.02 E-value=89 Score=25.18 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTA 212 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~ 212 (487)
-|..|+.+...|..|...|+.++..+.
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566665566666655555554433
No 96
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=23.98 E-value=3e+02 Score=22.48 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELH 205 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLq 205 (487)
..++.+...+..|...|..|+
T Consensus 13 ~klq~~E~rN~~Le~~v~~le 33 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAME 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 344444434444444443333
No 97
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=23.96 E-value=1.4e+02 Score=25.05 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046676 212 ASHMEAINQRIHAAEQRQKQMV 233 (487)
Q Consensus 212 ~~qmq~lnqRLq~~EqrQqQMl 233 (487)
.++|+.+++.|-.+|..+.+|.
T Consensus 49 i~Emq~Ir~tvyeLE~~h~kmK 70 (92)
T 3vp9_A 49 LAEMQQIRNTVYERELTHRKMK 70 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888888777774
No 98
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.28 E-value=47 Score=21.86 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046676 189 QLRKERGMLMQEVVELHQQH 208 (487)
Q Consensus 189 ~LK~ek~~L~qELvkLqQQQ 208 (487)
.|.-++.+|.|.+..|+|+.
T Consensus 4 alefendaleqkiaalkqki 23 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHH
Confidence 34444556666666555543
No 99
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.96 E-value=57 Score=26.51 Aligned_cols=10 Identities=30% Similarity=0.311 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 046676 190 LRKERGMLMQ 199 (487)
Q Consensus 190 LK~ek~~L~q 199 (487)
|..++..|..
T Consensus 48 L~~eN~~L~~ 57 (78)
T 1gu4_A 48 LTAENERLQK 57 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 100
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=22.49 E-value=1.5e+02 Score=24.17 Aligned_cols=39 Identities=8% Similarity=0.103 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQR 221 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqR 221 (487)
++.+...|+.....|.+.+..-+.+|.....+++.+.+.
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555444444444333
No 101
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=22.47 E-value=52 Score=30.83 Aligned_cols=64 Identities=17% Similarity=0.358 Sum_probs=48.6
Q ss_pred CCChhHH-HHHHhhcCCCCCCeeEEcCCCCeEEE-eCCchhhhhh-cCCCC-CCCChhhHHh-----hhccccc
Q 046676 67 PIPPFLA-KTFDLVDDTSLDPIISWGSTGESFVV-WDPLEFSRLI-LPRNF-KHNNFSSFVR-----QLNTYGF 131 (487)
Q Consensus 67 ~~p~Fl~-KLy~mVedp~~~~IIsWs~~G~sFvI-~d~~~F~k~V-LPkyF-Kh~nfsSFvR-----QLN~YGF 131 (487)
.+..|++ .+|.|+=.-.-+ ...|+++++.|+| .|..-+..-| ||+.. ..-+|+.|+. -|.+-||
T Consensus 85 e~l~fI~k~~Wk~lfgk~~d-~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 85 KTSEVLSKCAFKIFLNITPN-ITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp HHHHHHHHHHHHHHSSCCCC-CBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCCc-cceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 4567885 588888776654 6789999999999 7776655544 78776 6779999984 4788888
No 102
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.19 E-value=2.5e+02 Score=28.29 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHR------GTASHMEAINQRIHAAEQRQK 230 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~------~~~~qmq~lnqRLq~~EqrQq 230 (487)
.-++.|+.++..|.+++.++.++.. ...+++.++.+++.+.+++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 298 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIE 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666665543321 123455555555555554443
No 103
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.13 E-value=3.2e+02 Score=22.24 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 046676 200 EVVELHQQHRGTASHMEAINQRI 222 (487)
Q Consensus 200 ELvkLqQQQ~~~~~qmq~lnqRL 222 (487)
-+.+|+++...+..++..|+-.+
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqi 43 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQI 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444444444443333
No 104
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=21.66 E-value=3.1e+02 Score=21.92 Aligned_cols=39 Identities=10% Similarity=0.219 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQ 227 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~Eq 227 (487)
|++.|+..+..|...+.++.++... ++..++..+...|.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~---~~~~~q~~i~~lE~ 40 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAV---EAANYQDTIGRLQD 40 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 6788888888888888888776643 33444444444443
No 105
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.36 E-value=2.6e+02 Score=26.33 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=22.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAIN 219 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~ln 219 (487)
.|..|+..|..+.....+|+..|+.|......+.....
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45556666666666666666666666655555554433
No 106
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.13 E-value=3.5e+02 Score=24.66 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=23.2
Q ss_pred CchHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVV-------ELHQQHRGTASHMEAINQRIHAAEQR 228 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELv-------kLqQQQ~~~~~qmq~lnqRLq~~Eqr 228 (487)
.|+.|+..|++....|..|+. .++.+...+.-++..+++++..+++-
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666555554443 33333344444444445555554443
No 107
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.09 E-value=4.7e+02 Score=24.46 Aligned_cols=57 Identities=26% Similarity=0.219 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKL 239 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakv 239 (487)
|+.++..|+..+..|...|.+|.|.+..++...+....-+..++.+-.+.+-=.|-+
T Consensus 93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alL 149 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFL 149 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
No 108
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.04 E-value=2.1e+02 Score=23.48 Aligned_cols=27 Identities=11% Similarity=0.152 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 046676 191 RKERGMLMQEVVELHQQHRGTASHMEA 217 (487)
Q Consensus 191 K~ek~~L~qELvkLqQQQ~~~~~qmq~ 217 (487)
+.+...+..++.+|+.++.....++..
T Consensus 9 ~~~~~~~~~~l~~L~~~~~~l~~~i~~ 35 (112)
T 1l8d_A 9 ETKKTTIEEERNEITQRIGELKNKIGD 35 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444443333333333
No 109
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=20.72 E-value=50 Score=31.87 Aligned_cols=16 Identities=6% Similarity=-0.074 Sum_probs=8.9
Q ss_pred ccCCCCCCCcccccch
Q 046676 385 ENIHDISSPGIECIAT 400 (487)
Q Consensus 385 ~~~~~~~~~~~~~~~~ 400 (487)
+.+-||+.+..--+|+
T Consensus 211 ~P~ad~~~l~~V~Vi~ 226 (255)
T 2j5u_A 211 KPGADMYDLNHVTVLK 226 (255)
T ss_dssp EESSCCSSCCEEEEEE
T ss_pred EECCCcccCeEEEEEe
Confidence 4666666665544443
No 110
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=20.68 E-value=3.3e+02 Score=22.61 Aligned_cols=12 Identities=0% Similarity=0.321 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 046676 213 SHMEAINQRIHA 224 (487)
Q Consensus 213 ~qmq~lnqRLq~ 224 (487)
..+..|+.|++.
T Consensus 44 ~Ei~sL~kk~~~ 55 (101)
T 3u1c_A 44 DDIVQLEKQLRV 55 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334444433
No 111
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.60 E-value=86 Score=20.47 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVEL 204 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkL 204 (487)
+..|+-.||-+..+|..|+.+|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 4456666666666666666554
No 112
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.49 E-value=2.8e+02 Score=22.63 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676 185 GDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH 223 (487)
Q Consensus 185 ~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq 223 (487)
.-++.|.+....+..++.+|..+......++..+...|+
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666676666666655556655555544
No 113
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.39 E-value=71 Score=24.06 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 046676 183 VQGDIEQLRKERGMLMQEVVELH 205 (487)
Q Consensus 183 Le~EIE~LK~ek~~L~qELvkLq 205 (487)
|+.++..|..++..|..++..|+
T Consensus 27 LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 27 LENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 114
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.12 E-value=2.8e+02 Score=28.79 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=17.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 046676 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQ 220 (487)
Q Consensus 182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnq 220 (487)
.|+..|+.||+....-...|..||...+....+|+.|+.
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554443333444444444433344444433
No 115
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.05 E-value=1.5e+02 Score=23.99 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046676 186 DIEQLRKERGMLMQEVVELHQ 206 (487)
Q Consensus 186 EIE~LK~ek~~L~qELvkLqQ 206 (487)
|++.|+..+..|...+.++.+
T Consensus 4 eie~L~~q~~~Le~~l~e~E~ 24 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLED 24 (86)
T ss_dssp --------CTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
Done!