Query 046677
Match_columns 202
No_of_seqs 160 out of 336
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:21:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.3 1.4E-11 3.1E-16 86.8 8.1 58 2-59 7-64 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 4.6E-11 9.9E-16 84.2 8.7 57 2-58 7-63 (64)
3 KOG4005 Transcription factor X 99.0 1.4E-09 3E-14 96.8 9.2 71 1-71 70-140 (292)
4 KOG4343 bZIP transcription fac 98.9 1.2E-09 2.6E-14 105.5 6.2 61 3-63 284-344 (655)
5 PF07716 bZIP_2: Basic region 98.9 4.5E-09 9.7E-14 72.3 7.3 48 2-50 7-54 (54)
6 KOG0709 CREB/ATF family transc 98.3 1.5E-06 3.3E-11 82.8 6.0 61 2-62 253-313 (472)
7 PF03131 bZIP_Maf: bZIP Maf tr 97.7 8.1E-07 1.7E-11 67.0 -5.3 59 2-60 32-90 (92)
8 KOG0837 Transcriptional activa 97.0 0.0018 3.8E-08 58.7 6.4 45 5-49 211-255 (279)
9 PF11559 ADIP: Afadin- and alp 96.2 0.13 2.9E-06 41.2 11.9 83 13-95 44-126 (151)
10 PF06156 DUF972: Protein of un 96.1 0.032 6.9E-07 44.0 7.3 50 21-70 8-57 (107)
11 KOG4571 Activating transcripti 95.9 0.031 6.7E-07 51.2 7.5 45 7-51 234-278 (294)
12 PRK13169 DNA replication intia 95.9 0.042 9E-07 43.8 7.2 48 22-69 9-56 (110)
13 PF14197 Cep57_CLD_2: Centroso 95.5 0.25 5.4E-06 36.2 9.7 61 25-92 2-62 (69)
14 PF14197 Cep57_CLD_2: Centroso 95.5 0.16 3.4E-06 37.3 8.5 51 21-71 12-62 (69)
15 PF06005 DUF904: Protein of un 95.5 0.39 8.5E-06 35.5 10.6 48 22-69 5-52 (72)
16 PF14662 CCDC155: Coiled-coil 95.0 0.24 5.3E-06 43.1 9.6 76 22-101 9-84 (193)
17 KOG4196 bZIP transcription fac 94.3 0.36 7.8E-06 40.0 8.6 45 3-47 56-100 (135)
18 COG4467 Regulator of replicati 94.1 0.15 3.3E-06 41.1 5.9 46 22-67 9-54 (114)
19 KOG3119 Basic region leucine z 94.1 0.21 4.5E-06 44.6 7.4 45 4-48 198-242 (269)
20 TIGR02449 conserved hypothetic 94.0 0.38 8.3E-06 35.3 7.3 46 23-68 9-54 (65)
21 PRK15422 septal ring assembly 93.6 1.3 2.8E-05 33.9 9.8 68 22-96 5-76 (79)
22 PRK10884 SH3 domain-containing 93.5 1.4 3E-05 38.2 11.2 58 37-94 120-177 (206)
23 COG3074 Uncharacterized protei 93.1 2.1 4.5E-05 32.5 10.0 68 23-97 6-77 (79)
24 PF12325 TMF_TATA_bd: TATA ele 93.0 1.9 4E-05 34.8 10.4 42 22-63 24-65 (120)
25 PF07989 Microtub_assoc: Micro 92.9 1.9 4E-05 32.1 9.5 51 23-73 2-60 (75)
26 PF10146 zf-C4H2: Zinc finger- 92.9 5.5 0.00012 35.2 14.1 83 14-96 25-108 (230)
27 KOG3863 bZIP transcription fac 92.7 0.31 6.7E-06 48.6 6.6 62 2-70 492-553 (604)
28 KOG4005 Transcription factor X 92.5 1.4 3E-05 40.2 10.0 65 14-78 89-154 (292)
29 PF06005 DUF904: Protein of un 92.2 1.1 2.3E-05 33.2 7.5 45 23-67 13-57 (72)
30 PF04111 APG6: Autophagy prote 91.8 3.9 8.5E-05 37.3 12.2 44 24-67 46-89 (314)
31 PF04102 SlyX: SlyX; InterPro 91.6 1 2.2E-05 32.5 6.7 49 21-69 4-52 (69)
32 COG1579 Zn-ribbon protein, pos 91.5 7.1 0.00015 35.0 13.3 67 5-71 36-111 (239)
33 PF08614 ATG16: Autophagy prot 91.1 1.1 2.4E-05 37.6 7.5 61 22-82 117-177 (194)
34 PF14662 CCDC155: Coiled-coil 91.0 2 4.3E-05 37.5 9.1 42 24-65 98-139 (193)
35 PRK00295 hypothetical protein; 90.6 2.2 4.7E-05 31.0 7.6 45 22-66 6-50 (68)
36 PRK02793 phi X174 lysis protei 90.6 1.9 4.1E-05 31.6 7.4 43 21-63 8-50 (72)
37 PRK00736 hypothetical protein; 90.6 2 4.4E-05 31.2 7.4 44 22-65 6-49 (68)
38 PF10224 DUF2205: Predicted co 90.5 2 4.3E-05 32.6 7.6 47 23-69 18-64 (80)
39 PRK04325 hypothetical protein; 90.5 1.9 4.2E-05 31.7 7.4 42 22-63 10-51 (74)
40 PF13747 DUF4164: Domain of un 90.5 5.1 0.00011 30.5 9.9 65 4-68 15-79 (89)
41 PRK02119 hypothetical protein; 90.4 2 4.4E-05 31.6 7.4 43 21-63 9-51 (73)
42 PRK10884 SH3 domain-containing 90.0 2.7 5.8E-05 36.5 9.0 8 61-68 137-144 (206)
43 COG2433 Uncharacterized conser 89.7 3.9 8.4E-05 41.4 10.9 45 21-65 422-466 (652)
44 TIGR02449 conserved hypothetic 89.6 5.4 0.00012 29.3 9.0 46 23-68 2-47 (65)
45 PRK04406 hypothetical protein; 89.4 2.6 5.7E-05 31.3 7.4 36 22-57 12-47 (75)
46 PF08614 ATG16: Autophagy prot 89.4 9.3 0.0002 32.1 11.6 29 33-61 149-177 (194)
47 COG3074 Uncharacterized protei 88.7 4 8.8E-05 31.0 7.9 44 22-65 19-62 (79)
48 PRK00846 hypothetical protein; 88.3 3.5 7.7E-05 31.1 7.5 45 21-65 13-57 (77)
49 PF12325 TMF_TATA_bd: TATA ele 87.6 13 0.00029 29.9 11.2 46 23-68 18-63 (120)
50 PF15070 GOLGA2L5: Putative go 87.5 14 0.00031 37.0 13.2 84 9-93 110-218 (617)
51 PRK13729 conjugal transfer pil 87.4 3.3 7.2E-05 40.5 8.6 44 22-65 77-120 (475)
52 PRK15422 septal ring assembly 87.3 6.3 0.00014 30.1 8.3 44 23-66 20-63 (79)
53 KOG4807 F-actin binding protei 87.0 10 0.00022 37.1 11.6 77 18-94 390-491 (593)
54 TIGR02894 DNA_bind_RsfA transc 86.8 3.8 8.2E-05 34.9 7.6 42 30-71 99-140 (161)
55 PRK11637 AmiB activator; Provi 86.4 19 0.00042 33.5 12.8 50 20-69 60-109 (428)
56 PF10805 DUF2730: Protein of u 86.4 7.6 0.00016 30.1 8.6 65 10-74 30-97 (106)
57 PF02183 HALZ: Homeobox associ 85.5 2.9 6.3E-05 28.4 5.2 36 33-68 3-38 (45)
58 PF02403 Seryl_tRNA_N: Seryl-t 85.4 14 0.0003 27.9 10.7 68 3-70 5-88 (108)
59 PF04849 HAP1_N: HAP1 N-termin 84.9 7.3 0.00016 36.2 9.1 58 32-96 231-288 (306)
60 PRK11637 AmiB activator; Provi 84.8 34 0.00074 31.9 13.6 49 23-71 56-104 (428)
61 PF00038 Filament: Intermediat 84.6 13 0.00029 32.5 10.3 16 78-93 97-112 (312)
62 TIGR03752 conj_TIGR03752 integ 83.7 7.3 0.00016 38.1 9.0 42 29-70 60-101 (472)
63 KOG0946 ER-Golgi vesicle-tethe 83.6 10 0.00023 39.7 10.3 77 20-103 649-725 (970)
64 PF07106 TBPIP: Tat binding pr 83.5 9.9 0.00021 31.0 8.5 16 52-67 119-134 (169)
65 PF12711 Kinesin-relat_1: Kine 83.5 18 0.0004 27.8 9.9 58 32-91 21-84 (86)
66 KOG0239 Kinesin (KAR3 subfamil 83.5 17 0.00037 36.8 11.7 71 23-93 243-316 (670)
67 TIGR03752 conj_TIGR03752 integ 83.3 12 0.00025 36.8 10.1 27 23-49 68-94 (472)
68 PF05266 DUF724: Protein of un 83.1 27 0.00059 30.0 11.3 49 3-51 92-140 (190)
69 PF10473 CENP-F_leu_zip: Leuci 82.7 26 0.00057 29.0 12.8 64 7-70 38-101 (140)
70 KOG0995 Centromere-associated 82.7 32 0.00069 34.7 13.0 47 20-66 279-325 (581)
71 PF10186 Atg14: UV radiation r 82.1 29 0.00063 29.6 11.2 79 16-94 58-136 (302)
72 PF05377 FlaC_arch: Flagella a 81.8 6.3 0.00014 28.2 5.8 46 23-82 2-47 (55)
73 PF10186 Atg14: UV radiation r 81.7 32 0.00069 29.3 13.7 39 13-51 62-100 (302)
74 PF05266 DUF724: Protein of un 81.6 33 0.00072 29.4 12.9 45 50-94 125-169 (190)
75 PF05911 DUF869: Plant protein 81.2 25 0.00054 36.3 12.1 23 80-102 193-215 (769)
76 PRK09039 hypothetical protein; 81.2 46 0.00099 30.8 13.3 39 30-68 139-177 (343)
77 PF08647 BRE1: BRE1 E3 ubiquit 81.1 22 0.00048 27.0 12.2 74 4-77 7-81 (96)
78 PF07888 CALCOCO1: Calcium bin 80.8 55 0.0012 32.8 13.8 34 24-57 160-193 (546)
79 PF15294 Leu_zip: Leucine zipp 80.8 5.9 0.00013 36.3 6.8 43 26-68 130-172 (278)
80 PF12711 Kinesin-relat_1: Kine 80.5 6.3 0.00014 30.4 5.9 65 28-93 3-67 (86)
81 PF05837 CENP-H: Centromere pr 80.2 16 0.00036 28.3 8.2 45 29-73 4-48 (106)
82 PF07798 DUF1640: Protein of u 79.7 22 0.00047 29.5 9.4 46 24-69 47-93 (177)
83 PF08172 CASP_C: CASP C termin 79.1 5.8 0.00013 35.4 6.1 38 16-53 88-125 (248)
84 PRK13169 DNA replication intia 79.1 20 0.00042 28.6 8.5 39 25-63 5-43 (110)
85 PF09304 Cortex-I_coil: Cortex 79.1 32 0.00069 27.7 9.8 54 14-67 23-76 (107)
86 PF06428 Sec2p: GDP/GTP exchan 79.0 3 6.5E-05 32.7 3.8 81 20-102 7-90 (100)
87 PF01166 TSC22: TSC-22/dip/bun 78.9 3.9 8.5E-05 29.7 4.1 29 35-63 14-42 (59)
88 PRK09039 hypothetical protein; 78.7 25 0.00054 32.4 10.3 68 26-93 121-199 (343)
89 PF08581 Tup_N: Tup N-terminal 78.4 26 0.00057 26.4 11.1 70 22-94 5-74 (79)
90 PF06156 DUF972: Protein of un 78.4 13 0.00027 29.4 7.2 40 25-64 5-44 (107)
91 PF07888 CALCOCO1: Calcium bin 78.3 30 0.00065 34.6 11.2 42 20-61 170-211 (546)
92 PF05700 BCAS2: Breast carcino 78.2 44 0.00095 28.8 11.3 76 21-96 136-215 (221)
93 PF12718 Tropomyosin_1: Tropom 78.0 36 0.00079 27.7 10.1 34 24-57 17-50 (143)
94 PF04111 APG6: Autophagy prote 77.9 33 0.00071 31.3 10.7 75 18-92 61-135 (314)
95 smart00338 BRLZ basic region l 77.7 10 0.00022 26.4 5.9 26 43-68 27-52 (65)
96 KOG0977 Nuclear envelope prote 77.4 51 0.0011 33.0 12.5 42 25-66 145-186 (546)
97 PF08317 Spc7: Spc7 kinetochor 77.3 56 0.0012 29.6 13.2 39 24-62 212-250 (325)
98 PF10473 CENP-F_leu_zip: Leuci 77.2 27 0.00058 28.9 9.1 77 20-96 23-99 (140)
99 PF15035 Rootletin: Ciliary ro 77.1 21 0.00046 30.4 8.7 47 41-94 66-112 (182)
100 PF04156 IncA: IncA protein; 77.0 39 0.00085 27.6 11.4 49 21-69 88-136 (191)
101 PF10481 CENP-F_N: Cenp-F N-te 76.7 47 0.001 31.0 11.3 65 28-92 60-124 (307)
102 PF03962 Mnd1: Mnd1 family; I 76.6 41 0.00089 28.6 10.3 82 18-99 66-157 (188)
103 PRK00888 ftsB cell division pr 76.3 10 0.00023 29.5 6.1 32 38-69 30-61 (105)
104 PF15294 Leu_zip: Leucine zipp 76.3 13 0.00028 34.1 7.6 55 44-98 127-181 (278)
105 PF08317 Spc7: Spc7 kinetochor 76.1 31 0.00068 31.3 10.0 8 86-93 278-285 (325)
106 PHA02562 46 endonuclease subun 76.1 69 0.0015 30.1 12.6 38 24-61 361-398 (562)
107 PF12709 Kinetocho_Slk19: Cent 76.1 14 0.0003 28.6 6.6 50 20-69 26-76 (87)
108 KOG0243 Kinesin-like protein [ 75.6 44 0.00096 35.9 12.1 61 5-65 415-492 (1041)
109 KOG3650 Predicted coiled-coil 75.1 11 0.00023 30.6 5.9 43 26-68 61-103 (120)
110 PRK02224 chromosome segregatio 75.1 52 0.0011 33.0 12.1 46 23-68 594-639 (880)
111 PF05103 DivIVA: DivIVA protei 74.9 2.2 4.8E-05 32.7 2.0 46 21-66 25-70 (131)
112 KOG4674 Uncharacterized conser 74.8 17 0.00038 40.8 9.3 79 15-93 1237-1323(1822)
113 PF06216 RTBV_P46: Rice tungro 74.6 18 0.00039 33.8 8.1 58 13-70 52-113 (389)
114 TIGR02209 ftsL_broad cell divi 74.2 24 0.00053 25.2 7.2 42 34-75 23-64 (85)
115 PF15058 Speriolin_N: Sperioli 73.9 6.8 0.00015 34.5 5.0 43 47-89 10-52 (200)
116 TIGR00219 mreC rod shape-deter 73.9 11 0.00024 33.8 6.5 45 50-97 67-111 (283)
117 PF08232 Striatin: Striatin fa 73.9 29 0.00063 28.1 8.3 46 24-69 14-59 (134)
118 COG2433 Uncharacterized conser 73.9 73 0.0016 32.6 12.6 84 8-91 422-509 (652)
119 PF10211 Ax_dynein_light: Axon 73.9 55 0.0012 27.8 11.0 41 23-63 122-162 (189)
120 PRK13922 rod shape-determining 73.7 28 0.00061 30.3 8.8 44 49-96 69-112 (276)
121 PF07106 TBPIP: Tat binding pr 73.7 13 0.00029 30.3 6.4 13 79-91 125-137 (169)
122 PF00170 bZIP_1: bZIP transcri 73.6 17 0.00038 25.2 6.2 26 43-68 27-52 (64)
123 PF14817 HAUS5: HAUS augmin-li 73.5 65 0.0014 32.7 12.3 64 15-78 73-136 (632)
124 PF00769 ERM: Ezrin/radixin/mo 73.4 36 0.00079 30.0 9.5 67 25-91 51-117 (246)
125 PF13870 DUF4201: Domain of un 73.2 29 0.00062 28.5 8.3 35 33-67 68-102 (177)
126 PF05667 DUF812: Protein of un 73.1 61 0.0013 32.5 11.9 66 17-82 324-389 (594)
127 KOG2010 Double stranded RNA bi 72.5 20 0.00044 34.2 8.0 29 39-67 158-186 (405)
128 PF04977 DivIC: Septum formati 72.0 16 0.00036 25.4 5.8 31 38-68 20-50 (80)
129 KOG0161 Myosin class II heavy 71.8 46 0.00099 37.9 11.6 87 9-95 1648-1734(1930)
130 KOG4360 Uncharacterized coiled 71.6 45 0.00097 33.6 10.4 50 23-72 221-270 (596)
131 COG4942 Membrane-bound metallo 71.6 89 0.0019 30.4 12.3 53 20-72 58-110 (420)
132 KOG0977 Nuclear envelope prote 71.5 80 0.0017 31.7 12.2 44 48-91 147-190 (546)
133 PF10211 Ax_dynein_light: Axon 71.4 63 0.0014 27.4 12.4 54 39-92 124-178 (189)
134 PF09726 Macoilin: Transmembra 71.4 1.1E+02 0.0024 31.2 13.5 16 37-52 589-604 (697)
135 PF11932 DUF3450: Protein of u 71.3 68 0.0015 27.8 13.4 44 26-69 54-97 (251)
136 PF12718 Tropomyosin_1: Tropom 71.2 19 0.00041 29.4 6.8 57 23-79 23-79 (143)
137 PF12777 MT: Microtubule-bindi 71.2 27 0.00059 31.8 8.5 64 23-86 230-293 (344)
138 KOG0288 WD40 repeat protein Ti 71.0 69 0.0015 31.5 11.3 62 20-81 47-113 (459)
139 cd07596 BAR_SNX The Bin/Amphip 71.0 47 0.001 26.7 9.0 26 15-40 111-136 (218)
140 PF08232 Striatin: Striatin fa 70.7 31 0.00068 27.9 7.9 50 40-89 9-58 (134)
141 PF10174 Cast: RIM-binding pro 70.6 77 0.0017 32.9 12.2 72 22-93 309-380 (775)
142 PF02183 HALZ: Homeobox associ 70.5 21 0.00045 24.2 5.7 15 79-93 28-42 (45)
143 PF04728 LPP: Lipoprotein leuc 70.0 38 0.00082 24.3 7.5 28 23-50 5-32 (56)
144 PF06419 COG6: Conserved oligo 69.9 1.1E+02 0.0024 30.4 12.9 73 20-92 44-119 (618)
145 TIGR00219 mreC rod shape-deter 69.6 23 0.00051 31.8 7.6 37 29-65 67-107 (283)
146 PRK03918 chromosome segregatio 69.6 1E+02 0.0022 30.9 12.6 8 163-170 788-795 (880)
147 COG3883 Uncharacterized protei 69.0 59 0.0013 29.7 10.0 56 16-71 33-88 (265)
148 PF10212 TTKRSYEDQ: Predicted 68.9 57 0.0012 32.5 10.5 64 27-91 433-515 (518)
149 KOG4571 Activating transcripti 68.6 17 0.00037 33.7 6.5 32 41-72 247-278 (294)
150 PRK00888 ftsB cell division pr 68.6 26 0.00057 27.3 6.7 33 17-49 30-62 (105)
151 PF09755 DUF2046: Uncharacteri 68.5 68 0.0015 30.0 10.4 41 24-64 23-63 (310)
152 PLN02678 seryl-tRNA synthetase 68.2 1E+02 0.0022 29.9 12.0 65 28-99 47-114 (448)
153 PRK02224 chromosome segregatio 68.0 97 0.0021 31.2 12.2 8 163-170 781-788 (880)
154 COG2900 SlyX Uncharacterized p 67.9 42 0.00091 25.3 7.4 31 21-51 8-38 (72)
155 COG3883 Uncharacterized protei 67.8 69 0.0015 29.3 10.2 65 23-93 47-111 (265)
156 COG1579 Zn-ribbon protein, pos 67.6 94 0.002 27.9 11.1 48 21-68 89-136 (239)
157 KOG1103 Predicted coiled-coil 67.5 19 0.00042 34.9 6.9 75 9-84 226-300 (561)
158 TIGR02894 DNA_bind_RsfA transc 67.3 20 0.00044 30.6 6.3 27 43-69 105-131 (161)
159 PF04977 DivIC: Septum formati 67.3 32 0.00069 23.9 6.5 29 19-47 22-50 (80)
160 PF09755 DUF2046: Uncharacteri 66.7 60 0.0013 30.4 9.7 22 45-66 181-202 (310)
161 PF04849 HAP1_N: HAP1 N-termin 66.6 62 0.0013 30.2 9.8 49 20-68 240-288 (306)
162 PF05377 FlaC_arch: Flagella a 66.5 18 0.00039 25.9 4.9 33 23-55 9-41 (55)
163 KOG1899 LAR transmembrane tyro 66.5 88 0.0019 32.5 11.5 83 5-89 129-217 (861)
164 PF03980 Nnf1: Nnf1 ; InterPr 66.2 13 0.00027 28.4 4.5 30 19-48 78-107 (109)
165 PF04156 IncA: IncA protein; 66.0 72 0.0016 26.0 10.4 39 24-62 84-122 (191)
166 PF13851 GAS: Growth-arrest sp 65.6 87 0.0019 26.8 12.7 51 5-55 77-127 (201)
167 KOG0996 Structural maintenance 65.4 1.1E+02 0.0023 33.8 12.3 95 11-107 532-626 (1293)
168 PRK05431 seryl-tRNA synthetase 65.2 1.3E+02 0.0028 28.6 12.6 65 28-99 42-109 (425)
169 PF15619 Lebercilin: Ciliary p 64.8 76 0.0016 27.3 9.4 16 78-93 172-187 (194)
170 PF07558 Shugoshin_N: Shugoshi 64.7 7.5 0.00016 26.3 2.7 34 32-65 11-44 (46)
171 PF01166 TSC22: TSC-22/dip/bun 64.6 12 0.00027 27.2 3.9 22 21-42 21-42 (59)
172 KOG4001 Axonemal dynein light 64.5 92 0.002 28.2 10.1 54 10-63 170-227 (259)
173 PF13870 DUF4201: Domain of un 63.9 81 0.0018 25.9 10.7 35 14-48 26-62 (177)
174 PF15619 Lebercilin: Ciliary p 63.9 96 0.0021 26.7 13.2 36 2-41 3-39 (194)
175 KOG4797 Transcriptional regula 63.8 16 0.00034 29.9 4.7 32 32-63 64-95 (123)
176 KOG2129 Uncharacterized conser 63.6 22 0.00047 35.1 6.5 68 23-92 45-115 (552)
177 PF02403 Seryl_tRNA_N: Seryl-t 63.5 61 0.0013 24.3 8.2 24 33-56 34-57 (108)
178 PF00038 Filament: Intermediat 63.3 1E+02 0.0022 26.9 14.0 42 30-71 211-252 (312)
179 KOG0963 Transcription factor/C 63.0 58 0.0013 33.2 9.4 51 34-92 309-359 (629)
180 KOG0250 DNA repair protein RAD 62.9 1.8E+02 0.0038 31.7 13.3 79 16-94 374-453 (1074)
181 COG4026 Uncharacterized protei 62.9 96 0.0021 28.5 10.0 70 23-99 137-206 (290)
182 PF15035 Rootletin: Ciliary ro 62.7 98 0.0021 26.4 10.9 49 28-76 74-122 (182)
183 KOG3119 Basic region leucine z 62.6 66 0.0014 28.8 9.0 68 20-101 193-260 (269)
184 PF09730 BicD: Microtubule-ass 62.5 1E+02 0.0022 31.9 11.2 8 166-173 269-276 (717)
185 PF04999 FtsL: Cell division p 62.0 41 0.0009 24.9 6.5 42 34-75 34-75 (97)
186 PF07412 Geminin: Geminin; In 62.0 43 0.00092 29.5 7.5 29 35-63 125-153 (200)
187 PRK13922 rod shape-determining 61.7 1.1E+02 0.0024 26.7 11.6 11 53-63 97-107 (276)
188 KOG1962 B-cell receptor-associ 61.6 31 0.00067 30.6 6.6 61 26-93 149-209 (216)
189 PF11559 ADIP: Afadin- and alp 61.1 83 0.0018 25.1 13.8 57 7-63 52-108 (151)
190 PF05911 DUF869: Plant protein 60.7 79 0.0017 32.8 10.2 49 22-70 93-148 (769)
191 PF07889 DUF1664: Protein of u 60.3 62 0.0013 26.4 7.7 66 32-100 40-105 (126)
192 PF06785 UPF0242: Uncharacteri 59.8 60 0.0013 31.2 8.5 49 17-65 123-171 (401)
193 PHA03155 hypothetical protein; 59.7 13 0.00028 30.3 3.6 23 23-45 10-32 (115)
194 PF07407 Seadorna_VP6: Seadorn 59.6 49 0.0011 31.8 7.9 24 31-54 35-58 (420)
195 PF04880 NUDE_C: NUDE protein, 59.6 16 0.00035 31.1 4.3 50 23-76 2-51 (166)
196 PF07926 TPR_MLP1_2: TPR/MLP1/ 59.4 88 0.0019 24.8 9.2 20 50-69 99-118 (132)
197 PF15290 Syntaphilin: Golgi-lo 59.1 1E+02 0.0023 28.8 9.7 56 41-96 74-136 (305)
198 PF07716 bZIP_2: Basic region 59.0 30 0.00066 23.4 4.9 29 41-69 24-52 (54)
199 KOG0982 Centrosomal protein Nu 58.9 41 0.00088 33.2 7.4 24 76-99 310-333 (502)
200 PRK10803 tol-pal system protei 58.6 64 0.0014 28.6 8.1 44 23-66 56-99 (263)
201 PF05557 MAD: Mitotic checkpoi 58.3 1.2E+02 0.0025 30.5 10.7 26 73-98 562-587 (722)
202 PRK10698 phage shock protein P 58.2 1.3E+02 0.0027 26.2 10.6 58 21-78 99-156 (222)
203 PF09730 BicD: Microtubule-ass 57.5 1E+02 0.0022 31.9 10.2 18 79-96 123-140 (717)
204 PF09726 Macoilin: Transmembra 57.5 2.3E+02 0.005 29.1 12.8 37 12-48 479-515 (697)
205 PF05667 DUF812: Protein of un 57.3 79 0.0017 31.7 9.3 68 33-100 326-393 (594)
206 COG1196 Smc Chromosome segrega 57.3 2.4E+02 0.0053 30.0 13.3 39 23-61 385-423 (1163)
207 COG4467 Regulator of replicati 57.1 70 0.0015 26.1 7.3 40 25-64 5-44 (114)
208 PHA03162 hypothetical protein; 56.9 15 0.00032 30.7 3.6 28 18-45 10-37 (135)
209 PF14915 CCDC144C: CCDC144C pr 56.6 1.7E+02 0.0037 27.5 10.7 66 9-74 181-246 (305)
210 COG4026 Uncharacterized protei 56.6 1.6E+02 0.0035 27.1 10.3 53 21-73 156-208 (290)
211 PF14645 Chibby: Chibby family 56.3 42 0.00091 26.8 6.0 26 43-68 72-97 (116)
212 PF09728 Taxilin: Myosin-like 56.1 1.2E+02 0.0026 27.8 9.7 30 39-68 241-270 (309)
213 KOG0161 Myosin class II heavy 56.1 1.6E+02 0.0034 33.9 12.1 73 21-93 1639-1711(1930)
214 PRK14127 cell division protein 55.8 93 0.002 24.8 7.8 30 22-51 31-60 (109)
215 PF12709 Kinetocho_Slk19: Cent 55.7 96 0.0021 24.1 8.1 44 18-61 39-82 (87)
216 KOG1962 B-cell receptor-associ 55.4 1.5E+02 0.0033 26.4 10.5 8 83-90 192-199 (216)
217 KOG0933 Structural maintenance 55.4 1.5E+02 0.0032 32.4 11.1 70 24-93 790-859 (1174)
218 PF09738 DUF2051: Double stran 55.2 1.3E+02 0.0028 27.8 9.7 70 20-89 83-166 (302)
219 PRK13729 conjugal transfer pil 54.9 66 0.0014 31.8 8.1 51 34-91 75-125 (475)
220 PF09789 DUF2353: Uncharacteri 54.8 1.7E+02 0.0036 27.5 10.5 25 51-75 191-215 (319)
221 PF05557 MAD: Mitotic checkpoi 54.6 83 0.0018 31.5 9.0 21 49-69 566-586 (722)
222 smart00787 Spc7 Spc7 kinetocho 54.4 1.8E+02 0.0039 26.8 10.8 9 85-93 272-280 (312)
223 KOG0995 Centromere-associated 54.3 2.1E+02 0.0046 29.1 11.6 40 54-93 285-324 (581)
224 PHA02562 46 endonuclease subun 54.2 1.6E+02 0.0035 27.7 10.5 49 20-68 336-384 (562)
225 PF13094 CENP-Q: CENP-Q, a CEN 54.2 1.2E+02 0.0025 24.6 10.0 59 24-82 23-81 (160)
226 COG5293 Predicted ATPase [Gene 53.7 2.5E+02 0.0055 28.3 12.5 78 3-80 330-417 (591)
227 PF08606 Prp19: Prp19/Pso4-lik 53.6 93 0.002 23.3 7.1 36 38-73 4-39 (70)
228 PF10805 DUF2730: Protein of u 53.5 1E+02 0.0022 23.8 9.7 64 19-82 33-98 (106)
229 PF05812 Herpes_BLRF2: Herpesv 53.3 23 0.00049 28.9 4.1 27 21-47 3-29 (118)
230 PF07407 Seadorna_VP6: Seadorn 53.1 19 0.0004 34.5 4.0 30 43-72 33-62 (420)
231 PF05529 Bap31: B-cell recepto 53.0 1E+02 0.0022 25.6 8.1 17 75-91 173-189 (192)
232 PF04642 DUF601: Protein of un 52.8 61 0.0013 30.1 7.1 77 21-99 217-300 (311)
233 TIGR03495 phage_LysB phage lys 52.4 1.3E+02 0.0029 24.8 10.2 72 23-94 28-99 (135)
234 PF11365 DUF3166: Protein of u 52.0 1.1E+02 0.0024 24.1 7.5 23 76-98 28-50 (96)
235 KOG4643 Uncharacterized coiled 51.9 96 0.0021 33.7 9.2 77 21-97 264-342 (1195)
236 PF08172 CASP_C: CASP C termin 51.9 42 0.0009 30.0 5.9 10 77-86 121-130 (248)
237 PRK02119 hypothetical protein; 51.5 95 0.002 22.8 7.9 27 23-49 4-30 (73)
238 PF12808 Mto2_bdg: Micro-tubul 51.3 55 0.0012 23.1 5.2 17 18-34 1-17 (52)
239 TIGR02977 phageshock_pspA phag 51.2 1.6E+02 0.0034 25.2 10.8 59 20-78 98-156 (219)
240 PF07851 TMPIT: TMPIT-like pro 51.1 2.2E+02 0.0047 26.9 11.9 32 21-52 4-35 (330)
241 PF10779 XhlA: Haemolysin XhlA 51.0 89 0.0019 22.4 6.7 46 24-69 2-47 (71)
242 COG2919 Septum formation initi 50.7 71 0.0015 25.1 6.4 36 36-71 51-86 (117)
243 PF04012 PspA_IM30: PspA/IM30 50.6 1.5E+02 0.0033 24.9 10.3 43 26-68 103-145 (221)
244 PF01920 Prefoldin_2: Prefoldi 50.6 54 0.0012 23.9 5.5 34 21-54 62-95 (106)
245 KOG2391 Vacuolar sorting prote 50.6 1.5E+02 0.0033 28.4 9.6 53 34-86 224-276 (365)
246 KOG4343 bZIP transcription fac 50.4 22 0.00048 35.9 4.2 33 38-70 305-337 (655)
247 PF13935 Ead_Ea22: Ead/Ea22-li 50.1 1E+02 0.0022 24.8 7.4 13 17-29 77-89 (139)
248 TIGR02209 ftsL_broad cell divi 49.9 75 0.0016 22.7 6.0 29 20-48 30-58 (85)
249 KOG1414 Transcriptional activa 49.8 0.72 1.6E-05 43.1 -5.8 48 3-50 157-208 (395)
250 KOG1853 LIS1-interacting prote 49.5 2.3E+02 0.0049 26.6 12.4 79 14-92 84-172 (333)
251 PF04859 DUF641: Plant protein 49.4 47 0.001 27.3 5.3 41 23-63 89-129 (131)
252 PRK04863 mukB cell division pr 49.1 4.3E+02 0.0093 29.7 13.9 68 24-91 358-425 (1486)
253 PF03962 Mnd1: Mnd1 family; I 49.0 1.3E+02 0.0029 25.5 8.3 17 18-34 80-96 (188)
254 PF09728 Taxilin: Myosin-like 48.9 2.1E+02 0.0046 26.1 11.0 42 22-63 51-92 (309)
255 PF14915 CCDC144C: CCDC144C pr 48.2 1.8E+02 0.004 27.3 9.6 68 24-93 217-294 (305)
256 PF09325 Vps5: Vps5 C terminal 48.1 1.6E+02 0.0034 24.4 10.8 73 16-91 130-202 (236)
257 KOG4807 F-actin binding protei 47.9 2.6E+02 0.0056 27.9 10.8 49 19-67 416-481 (593)
258 PRK04406 hypothetical protein; 47.8 1.1E+02 0.0024 22.6 8.1 30 23-52 6-35 (75)
259 PF10481 CENP-F_N: Cenp-F N-te 47.6 2.5E+02 0.0053 26.4 11.0 61 33-93 58-118 (307)
260 KOG4593 Mitotic checkpoint pro 47.5 1.8E+02 0.004 30.2 10.2 73 20-96 250-325 (716)
261 PF12329 TMF_DNA_bd: TATA elem 47.1 1.1E+02 0.0024 22.4 9.8 48 21-68 12-59 (74)
262 KOG4643 Uncharacterized coiled 46.9 2.5E+02 0.0053 30.8 11.2 54 3-56 376-429 (1195)
263 PF12329 TMF_DNA_bd: TATA elem 46.7 1.1E+02 0.0025 22.3 8.2 64 23-93 7-70 (74)
264 KOG0288 WD40 repeat protein Ti 46.3 2.3E+02 0.005 27.9 10.2 43 25-67 31-73 (459)
265 PF05700 BCAS2: Breast carcino 45.6 1.4E+02 0.0031 25.7 8.1 29 41-69 174-202 (221)
266 PF02388 FemAB: FemAB family; 45.4 1.1E+02 0.0024 28.5 7.9 74 20-108 241-315 (406)
267 PF11365 DUF3166: Protein of u 45.2 95 0.0021 24.4 6.2 46 23-68 3-48 (96)
268 KOG0982 Centrosomal protein Nu 44.8 3.3E+02 0.0072 27.1 12.1 76 22-97 298-394 (502)
269 COG4942 Membrane-bound metallo 44.6 3.1E+02 0.0068 26.8 12.5 60 10-69 41-100 (420)
270 PF04340 DUF484: Protein of un 43.7 1.3E+02 0.0028 25.6 7.4 43 23-69 42-84 (225)
271 PF11172 DUF2959: Protein of u 43.5 2.4E+02 0.0051 25.0 10.1 82 3-87 22-106 (201)
272 PF09304 Cortex-I_coil: Cortex 43.5 1.7E+02 0.0038 23.5 12.4 46 21-66 16-61 (107)
273 PF06698 DUF1192: Protein of u 43.5 83 0.0018 22.7 5.3 24 23-46 23-46 (59)
274 PF04102 SlyX: SlyX; InterPro 43.3 1.2E+02 0.0026 21.7 7.3 23 26-48 2-24 (69)
275 KOG0447 Dynamin-like GTP bindi 43.2 1.5E+02 0.0033 30.9 8.8 47 15-66 221-267 (980)
276 PF07558 Shugoshin_N: Shugoshi 42.7 26 0.00057 23.7 2.5 40 4-44 5-44 (46)
277 PF11932 DUF3450: Protein of u 42.7 2.2E+02 0.0049 24.6 13.4 35 23-57 58-92 (251)
278 TIGR03185 DNA_S_dndD DNA sulfu 42.6 2.8E+02 0.0061 27.4 10.5 29 24-52 424-452 (650)
279 COG1382 GimC Prefoldin, chaper 42.3 1.3E+02 0.0028 24.5 6.8 12 80-91 94-105 (119)
280 KOG4196 bZIP transcription fac 42.2 89 0.0019 26.1 6.0 64 23-94 49-112 (135)
281 KOG0971 Microtubule-associated 42.1 3E+02 0.0064 30.1 10.9 87 9-95 398-508 (1243)
282 PF00261 Tropomyosin: Tropomyo 41.9 2.3E+02 0.005 24.5 10.9 13 26-38 139-151 (237)
283 PF01486 K-box: K-box region; 41.8 1.1E+02 0.0024 23.0 6.0 23 41-63 74-96 (100)
284 PF14988 DUF4515: Domain of un 41.8 1.7E+02 0.0038 25.3 8.0 48 44-91 151-198 (206)
285 COG3879 Uncharacterized protei 41.6 2.4E+02 0.0051 25.7 9.0 25 79-103 91-116 (247)
286 KOG4360 Uncharacterized coiled 41.5 4E+02 0.0087 27.1 11.3 50 24-73 208-257 (596)
287 TIGR00414 serS seryl-tRNA synt 41.4 1.8E+02 0.0039 27.5 8.7 62 25-89 41-106 (418)
288 PF05483 SCP-1: Synaptonemal c 41.3 2.5E+02 0.0054 29.5 10.0 78 18-95 605-686 (786)
289 KOG0976 Rho/Rac1-interacting s 41.3 2.8E+02 0.006 30.1 10.5 71 26-96 90-164 (1265)
290 KOG0250 DNA repair protein RAD 41.2 4.6E+02 0.01 28.7 12.3 79 16-94 684-772 (1074)
291 PF10146 zf-C4H2: Zinc finger- 40.8 2.6E+02 0.0056 24.8 11.6 62 38-99 35-103 (230)
292 PF13874 Nup54: Nucleoporin co 40.8 1.9E+02 0.0041 23.2 8.8 31 22-52 52-82 (141)
293 PF04871 Uso1_p115_C: Uso1 / p 40.8 2E+02 0.0043 23.4 9.2 80 21-100 27-118 (136)
294 KOG0933 Structural maintenance 40.4 3.4E+02 0.0073 29.8 11.0 11 110-120 507-517 (1174)
295 KOG0946 ER-Golgi vesicle-tethe 40.2 1.7E+02 0.0036 31.3 8.7 44 23-66 673-716 (970)
296 KOG0999 Microtubule-associated 39.9 2.5E+02 0.0054 29.0 9.6 66 26-98 6-78 (772)
297 KOG4603 TBP-1 interacting prot 39.7 2.7E+02 0.0058 24.6 9.0 37 29-65 80-116 (201)
298 PF10482 CtIP_N: Tumour-suppre 39.5 2.2E+02 0.0047 23.5 8.3 59 11-69 4-62 (120)
299 KOG0978 E3 ubiquitin ligase in 39.4 2.6E+02 0.0057 29.0 9.9 81 12-93 564-644 (698)
300 KOG2077 JNK/SAPK-associated pr 39.4 1.9E+02 0.004 30.1 8.7 66 28-93 301-373 (832)
301 PF04728 LPP: Lipoprotein leuc 39.2 1.4E+02 0.0031 21.4 7.3 35 28-62 3-37 (56)
302 KOG0996 Structural maintenance 39.0 3.7E+02 0.0081 29.8 11.2 18 79-96 879-897 (1293)
303 PRK05431 seryl-tRNA synthetase 38.8 2.4E+02 0.0052 26.8 9.1 31 23-53 30-60 (425)
304 PF15070 GOLGA2L5: Putative go 38.7 3.2E+02 0.007 27.6 10.4 58 20-77 166-223 (617)
305 KOG0289 mRNA splicing factor [ 38.6 1.4E+02 0.003 29.7 7.6 65 37-103 66-139 (506)
306 KOG0978 E3 ubiquitin ligase in 38.5 3.4E+02 0.0073 28.2 10.5 43 24-66 58-100 (698)
307 PF05531 NPV_P10: Nucleopolyhe 38.4 1.3E+02 0.0029 22.7 5.9 24 22-45 12-35 (75)
308 PF15254 CCDC14: Coiled-coil d 38.4 4.2E+02 0.0091 28.2 11.2 13 83-95 535-547 (861)
309 PF10224 DUF2205: Predicted co 38.4 1.2E+02 0.0025 23.1 5.6 18 76-93 50-67 (80)
310 PF09789 DUF2353: Uncharacteri 38.3 2E+02 0.0043 27.0 8.3 31 38-68 68-98 (319)
311 PF10234 Cluap1: Clusterin-ass 38.2 3.2E+02 0.0069 25.0 9.8 11 79-89 227-237 (267)
312 cd07429 Cby_like Chibby, a nuc 38.1 54 0.0012 26.3 4.0 26 43-68 73-98 (108)
313 KOG3335 Predicted coiled-coil 38.0 87 0.0019 27.4 5.5 36 11-46 96-131 (181)
314 PF13863 DUF4200: Domain of un 38.0 1.8E+02 0.0039 22.1 7.0 9 54-62 86-94 (126)
315 PF15058 Speriolin_N: Sperioli 37.8 65 0.0014 28.5 4.8 33 24-64 8-40 (200)
316 cd00632 Prefoldin_beta Prefold 37.7 1.4E+02 0.003 22.6 6.1 16 26-41 68-83 (105)
317 PF14817 HAUS5: HAUS augmin-li 37.1 4.7E+02 0.01 26.7 12.6 81 9-89 74-154 (632)
318 KOG0971 Microtubule-associated 37.0 1.6E+02 0.0035 31.9 8.2 46 22-67 1006-1051(1243)
319 PF04871 Uso1_p115_C: Uso1 / p 36.6 2.3E+02 0.005 23.0 10.0 74 23-96 17-96 (136)
320 PF01486 K-box: K-box region; 36.3 92 0.002 23.4 4.9 26 20-45 74-99 (100)
321 TIGR00606 rad50 rad50. This fa 36.2 5.9E+02 0.013 27.6 13.2 12 83-94 940-951 (1311)
322 PF00769 ERM: Ezrin/radixin/mo 35.8 3.1E+02 0.0067 24.2 10.9 77 18-94 30-113 (246)
323 PF12507 HCMV_UL139: Human Cyt 35.8 1.7E+02 0.0036 24.1 6.5 88 4-94 16-103 (121)
324 PF12808 Mto2_bdg: Micro-tubul 35.7 1.1E+02 0.0023 21.6 4.7 10 79-88 38-47 (52)
325 PF12777 MT: Microtubule-bindi 35.4 1.2E+02 0.0027 27.6 6.4 93 17-115 231-326 (344)
326 PF14077 WD40_alt: Alternative 35.3 40 0.00088 23.6 2.5 21 21-41 18-38 (48)
327 PF07989 Microtub_assoc: Micro 35.2 1.4E+02 0.0031 22.1 5.6 27 47-73 5-31 (75)
328 PF05600 DUF773: Protein of un 34.8 4.3E+02 0.0094 26.0 10.3 52 20-71 431-482 (507)
329 KOG4370 Ral-GTPase effector RL 34.8 1.6E+02 0.0035 29.3 7.3 48 37-98 408-455 (514)
330 PF10174 Cast: RIM-binding pro 34.7 5.6E+02 0.012 26.9 12.6 67 23-96 289-355 (775)
331 PF06632 XRCC4: DNA double-str 34.3 4E+02 0.0087 25.0 10.6 36 24-59 140-175 (342)
332 PF10168 Nup88: Nuclear pore c 34.2 3.8E+02 0.0082 27.6 10.1 29 26-54 563-591 (717)
333 PRK10803 tol-pal system protei 34.2 2E+02 0.0044 25.4 7.4 46 23-68 42-87 (263)
334 PF07246 Phlebovirus_NSM: Phle 34.2 3.3E+02 0.0071 25.1 8.8 13 82-94 228-240 (264)
335 PF10482 CtIP_N: Tumour-suppre 34.2 82 0.0018 25.9 4.5 25 19-43 94-118 (120)
336 PF05622 HOOK: HOOK protein; 34.1 13 0.00029 37.0 0.0 36 16-51 320-355 (713)
337 TIGR02132 phaR_Bmeg polyhydrox 34.1 2.3E+02 0.005 25.0 7.5 52 21-72 79-130 (189)
338 PF14916 CCDC92: Coiled-coil d 33.9 1.1E+02 0.0023 22.2 4.6 18 22-39 4-21 (60)
339 TIGR03185 DNA_S_dndD DNA sulfu 33.9 4.8E+02 0.01 25.8 11.3 45 21-65 209-253 (650)
340 KOG2264 Exostosin EXT1L [Signa 33.7 1.6E+02 0.0035 30.6 7.3 44 22-65 94-137 (907)
341 TIGR00634 recN DNA repair prot 33.7 1.6E+02 0.0034 28.7 7.1 58 24-81 171-234 (563)
342 KOG4436 Predicted GTPase activ 33.6 57 0.0012 34.6 4.3 61 20-80 828-893 (948)
343 PF14988 DUF4515: Domain of un 33.4 3.2E+02 0.007 23.7 10.9 47 29-75 157-203 (206)
344 PF04999 FtsL: Cell division p 33.3 84 0.0018 23.2 4.2 24 23-46 44-67 (97)
345 COG1792 MreC Cell shape-determ 33.3 3.4E+02 0.0075 24.5 8.8 46 50-99 67-112 (284)
346 PF05701 WEMBL: Weak chloropla 33.0 4.7E+02 0.01 25.5 11.2 72 23-94 283-354 (522)
347 TIGR01843 type_I_hlyD type I s 32.9 3.6E+02 0.0077 24.0 10.1 92 3-94 185-277 (423)
348 COG2919 Septum formation initi 32.7 2.2E+02 0.0047 22.4 6.6 31 41-71 49-79 (117)
349 PRK02793 phi X174 lysis protei 32.4 2E+02 0.0043 21.0 7.7 25 24-48 4-28 (72)
350 KOG4403 Cell surface glycoprot 32.3 4.3E+02 0.0094 26.6 9.8 73 20-95 241-320 (575)
351 PF02841 GBP_C: Guanylate-bind 32.3 3.6E+02 0.0079 24.0 12.0 24 20-43 228-251 (297)
352 PF15066 CAGE1: Cancer-associa 32.3 3.5E+02 0.0076 27.2 9.2 71 20-97 403-473 (527)
353 PLN02939 transferase, transfer 32.0 6.1E+02 0.013 27.4 11.5 25 47-71 224-248 (977)
354 TIGR02231 conserved hypothetic 31.5 4.7E+02 0.01 25.0 11.5 31 20-50 77-107 (525)
355 PF05483 SCP-1: Synaptonemal c 31.2 6.5E+02 0.014 26.6 11.5 73 22-94 581-653 (786)
356 COG5509 Uncharacterized small 31.2 1.2E+02 0.0026 22.4 4.5 23 23-45 27-49 (65)
357 PF10226 DUF2216: Uncharacteri 31.0 1.2E+02 0.0026 26.8 5.3 26 23-48 57-82 (195)
358 PF06810 Phage_GP20: Phage min 31.0 3.1E+02 0.0066 22.7 9.2 15 45-59 54-68 (155)
359 PF14645 Chibby: Chibby family 30.9 2.3E+02 0.0049 22.6 6.5 19 29-47 79-97 (116)
360 PLN02320 seryl-tRNA synthetase 30.9 5.4E+02 0.012 25.5 12.4 40 53-99 134-173 (502)
361 PHA03155 hypothetical protein; 30.7 64 0.0014 26.3 3.3 23 44-66 10-32 (115)
362 cd07665 BAR_SNX1 The Bin/Amphi 30.7 3.5E+02 0.0075 24.0 8.2 28 17-44 25-52 (234)
363 PF05791 Bacillus_HBL: Bacillu 30.6 3.2E+02 0.007 22.9 10.3 78 13-93 102-179 (184)
364 PLN02678 seryl-tRNA synthetase 30.2 4.1E+02 0.0089 25.8 9.2 33 28-60 33-65 (448)
365 PTZ00454 26S protease regulato 30.1 1.7E+02 0.0036 27.6 6.5 17 27-43 28-44 (398)
366 PRK13923 putative spore coat p 30.1 2.2E+02 0.0048 24.5 6.7 28 41-68 110-137 (170)
367 KOG0980 Actin-binding protein 29.9 7.5E+02 0.016 26.8 13.0 45 23-67 412-456 (980)
368 PRK14872 rod shape-determining 29.8 3.5E+02 0.0076 25.5 8.5 25 49-73 57-81 (337)
369 PF15030 DUF4527: Protein of u 29.7 4.6E+02 0.0099 24.3 12.0 49 39-87 55-103 (277)
370 KOG1029 Endocytic adaptor prot 29.7 4.3E+02 0.0094 28.5 9.7 29 15-43 480-508 (1118)
371 KOG2264 Exostosin EXT1L [Signa 29.7 3.3E+02 0.0072 28.4 8.7 63 35-97 86-148 (907)
372 PF06008 Laminin_I: Laminin Do 29.6 3.8E+02 0.0082 23.3 10.7 51 15-65 17-68 (264)
373 PRK14160 heat shock protein Gr 29.6 2.3E+02 0.005 25.0 6.8 46 22-67 55-100 (211)
374 PF05812 Herpes_BLRF2: Herpesv 29.5 72 0.0016 26.0 3.5 26 44-69 5-30 (118)
375 KOG0963 Transcription factor/C 29.5 6.5E+02 0.014 26.0 12.5 19 75-93 290-308 (629)
376 PRK03992 proteasome-activating 29.3 1.9E+02 0.0042 26.7 6.7 10 29-38 16-25 (389)
377 PF06008 Laminin_I: Laminin Do 29.1 3.9E+02 0.0084 23.3 10.7 48 22-69 46-93 (264)
378 PF12795 MscS_porin: Mechanose 28.9 3.7E+02 0.0081 23.0 10.0 35 31-65 153-187 (240)
379 PRK04863 mukB cell division pr 28.8 6.8E+02 0.015 28.2 11.5 49 20-68 375-423 (1486)
380 TIGR03545 conserved hypothetic 28.5 6.1E+02 0.013 25.3 10.7 85 20-107 190-282 (555)
381 PF12925 APP_E2: E2 domain of 28.3 4.1E+02 0.0089 23.3 9.3 82 13-95 39-126 (193)
382 cd07627 BAR_Vps5p The Bin/Amph 27.9 3.8E+02 0.0082 22.8 12.1 77 11-90 105-181 (216)
383 PF06694 Plant_NMP1: Plant nuc 27.7 3.6E+02 0.0079 25.6 8.1 64 19-86 166-235 (325)
384 PHA02557 22 prohead core prote 27.7 3.9E+02 0.0084 24.8 8.1 57 37-93 143-199 (271)
385 PHA03162 hypothetical protein; 27.7 75 0.0016 26.6 3.3 22 44-65 15-36 (135)
386 KOG1414 Transcriptional activa 27.6 9.4 0.0002 35.8 -2.2 37 5-41 290-326 (395)
387 PF09738 DUF2051: Double stran 27.4 3.6E+02 0.0079 24.9 8.0 41 23-63 121-161 (302)
388 PF13094 CENP-Q: CENP-Q, a CEN 27.4 2.7E+02 0.0059 22.4 6.6 40 24-63 44-83 (160)
389 cd07429 Cby_like Chibby, a nuc 27.3 1.4E+02 0.003 24.0 4.7 28 24-51 75-102 (108)
390 PRK00409 recombination and DNA 27.2 7.1E+02 0.015 25.7 11.0 23 23-45 522-544 (782)
391 PF09763 Sec3_C: Exocyst compl 27.2 4.2E+02 0.0092 26.4 9.0 74 20-93 22-98 (701)
392 KOG0976 Rho/Rac1-interacting s 27.2 3.4E+02 0.0075 29.4 8.5 43 26-68 104-146 (1265)
393 PF03980 Nnf1: Nnf1 ; InterPr 27.0 2.8E+02 0.0061 20.9 7.9 35 49-90 73-107 (109)
394 COG3879 Uncharacterized protei 26.9 3E+02 0.0066 25.0 7.3 44 25-68 54-101 (247)
395 KOG0804 Cytoplasmic Zn-finger 26.8 6.6E+02 0.014 25.2 10.2 15 47-61 394-408 (493)
396 PRK03992 proteasome-activating 26.8 2.7E+02 0.0058 25.8 7.2 42 24-65 4-45 (389)
397 PF06810 Phage_GP20: Phage min 26.8 3.7E+02 0.0079 22.2 9.6 12 57-68 52-63 (155)
398 PRK11020 hypothetical protein; 26.7 2.9E+02 0.0062 22.7 6.4 24 33-56 3-26 (118)
399 COG3167 PilO Tfp pilus assembl 26.6 3.5E+02 0.0077 24.2 7.4 79 19-109 47-125 (211)
400 PF04899 MbeD_MobD: MbeD/MobD 26.3 2.7E+02 0.0059 20.6 7.5 35 38-72 24-58 (70)
401 KOG3433 Protein involved in me 26.2 4.7E+02 0.01 23.3 8.8 51 18-68 78-128 (203)
402 COG5185 HEC1 Protein involved 26.2 5.6E+02 0.012 26.1 9.4 33 37-69 290-322 (622)
403 PRK10963 hypothetical protein; 26.1 2.5E+02 0.0055 24.1 6.5 45 23-71 39-83 (223)
404 KOG4673 Transcription factor T 26.0 8.3E+02 0.018 26.1 11.2 31 61-91 407-437 (961)
405 PRK00846 hypothetical protein; 25.9 2.9E+02 0.0063 20.8 7.7 26 24-49 9-34 (77)
406 KOG2189 Vacuolar H+-ATPase V0 25.7 5.8E+02 0.012 27.2 9.8 53 11-63 46-113 (829)
407 PF06785 UPF0242: Uncharacteri 25.7 5.9E+02 0.013 24.7 9.2 60 23-82 94-167 (401)
408 PF13166 AAA_13: AAA domain 25.6 6.4E+02 0.014 24.7 12.5 68 22-89 404-471 (712)
409 TIGR02680 conserved hypothetic 25.4 5.5E+02 0.012 28.2 10.0 78 16-93 737-816 (1353)
410 COG1561 Uncharacterized stress 25.4 3.9E+02 0.0085 24.9 7.8 84 12-97 146-232 (290)
411 TIGR01069 mutS2 MutS2 family p 25.4 7.7E+02 0.017 25.5 11.0 69 21-89 515-584 (771)
412 PF15188 CCDC-167: Coiled-coil 25.3 3.1E+02 0.0068 21.1 6.1 52 22-73 6-60 (85)
413 PF14523 Syntaxin_2: Syntaxin- 25.2 2.7E+02 0.0059 20.2 9.6 47 22-68 11-59 (102)
414 PRK14011 prefoldin subunit alp 24.9 4E+02 0.0086 22.0 7.4 24 26-49 93-116 (144)
415 PF10267 Tmemb_cc2: Predicted 24.9 6.3E+02 0.014 24.4 10.1 23 74-96 263-288 (395)
416 KOG0243 Kinesin-like protein [ 24.8 8.8E+02 0.019 26.6 11.1 26 39-64 487-512 (1041)
417 PRK12704 phosphodiesterase; Pr 24.4 6.9E+02 0.015 24.6 11.9 85 3-88 81-169 (520)
418 KOG2483 Upstream transcription 24.3 1.9E+02 0.004 25.9 5.4 38 18-69 102-139 (232)
419 KOG1003 Actin filament-coating 24.2 5.2E+02 0.011 23.1 8.7 42 24-65 112-153 (205)
420 PF04340 DUF484: Protein of un 24.2 4.4E+02 0.0096 22.3 8.6 41 42-82 40-80 (225)
421 PRK04778 septation ring format 24.1 6.9E+02 0.015 24.5 10.4 25 26-50 315-339 (569)
422 cd07666 BAR_SNX7 The Bin/Amphi 24.1 5.2E+02 0.011 23.1 11.6 75 2-86 151-227 (243)
423 PRK11578 macrolide transporter 24.0 4.1E+02 0.0088 24.0 7.6 7 98-104 189-195 (370)
424 PF09787 Golgin_A5: Golgin sub 24.0 6.7E+02 0.014 24.3 11.0 46 3-48 196-241 (511)
425 KOG0709 CREB/ATF family transc 23.9 3.7E+02 0.0079 26.8 7.7 29 41-69 271-299 (472)
426 PF07111 HCR: Alpha helical co 23.9 8.3E+02 0.018 25.7 10.4 17 83-99 217-233 (739)
427 PF01576 Myosin_tail_1: Myosin 23.7 26 0.00057 36.2 0.0 91 9-99 590-680 (859)
428 KOG0994 Extracellular matrix g 23.7 3.7E+02 0.0081 30.3 8.2 8 65-72 1269-1276(1758)
429 PF05761 5_nucleotid: 5' nucle 23.5 4.3E+02 0.0094 25.6 8.1 68 20-96 321-388 (448)
430 PF13093 FTA4: Kinetochore com 23.4 2.4E+02 0.0051 24.6 5.8 19 79-97 193-211 (213)
431 COG1729 Uncharacterized protei 23.4 2.1E+02 0.0046 26.1 5.7 28 23-51 58-85 (262)
432 TIGR00993 3a0901s04IAP86 chlor 23.1 1.1E+02 0.0025 31.8 4.3 32 4-35 414-445 (763)
433 PF11853 DUF3373: Protein of u 23.1 72 0.0016 31.5 2.8 24 22-45 32-55 (489)
434 PLN02320 seryl-tRNA synthetase 22.9 4.4E+02 0.0095 26.2 8.1 26 77-102 148-173 (502)
435 PF07047 OPA3: Optic atrophy 3 22.9 2.2E+02 0.0047 22.9 5.1 18 27-44 111-128 (134)
436 PF04420 CHD5: CHD5-like prote 22.8 3.5E+02 0.0076 22.3 6.5 49 19-67 38-91 (161)
437 TIGR00606 rad50 rad50. This fa 22.8 1E+03 0.022 25.9 12.7 45 23-67 890-934 (1311)
438 PRK05255 hypothetical protein; 22.8 4.9E+02 0.011 22.3 9.1 78 8-93 61-143 (171)
439 COG1792 MreC Cell shape-determ 22.7 5.6E+02 0.012 23.1 8.2 16 49-64 90-105 (284)
440 PF05300 DUF737: Protein of un 22.6 3.5E+02 0.0075 23.5 6.6 50 5-54 118-167 (187)
441 PRK11147 ABC transporter ATPas 22.4 3.5E+02 0.0076 26.6 7.4 23 23-45 570-592 (635)
442 PF11544 Spc42p: Spindle pole 22.4 3.6E+02 0.0077 20.6 7.3 37 25-61 9-45 (76)
443 KOG0018 Structural maintenance 22.3 1.1E+03 0.024 26.2 11.5 59 13-71 415-473 (1141)
444 PF13600 DUF4140: N-terminal d 22.3 2.2E+02 0.0048 21.1 4.8 16 50-65 85-100 (104)
445 PRK00295 hypothetical protein; 22.2 3.1E+02 0.0067 19.8 7.5 23 26-48 3-25 (68)
446 PF07028 DUF1319: Protein of u 22.2 4.6E+02 0.0099 21.7 7.8 16 71-86 104-119 (126)
447 PRK03947 prefoldin subunit alp 22.2 3.9E+02 0.0084 20.9 6.5 29 24-52 97-125 (140)
448 PHA02109 hypothetical protein 21.9 2.6E+02 0.0057 24.9 5.7 25 46-70 197-221 (233)
449 PF07058 Myosin_HC-like: Myosi 21.8 2.4E+02 0.0052 26.9 5.8 41 30-70 2-42 (351)
450 PF10046 BLOC1_2: Biogenesis o 21.8 3.6E+02 0.0079 20.4 8.6 40 30-69 23-62 (99)
451 PF13747 DUF4164: Domain of un 21.8 3.6E+02 0.0078 20.4 10.5 17 21-37 8-24 (89)
452 KOG0483 Transcription factor H 21.7 1.8E+02 0.0038 25.5 4.6 39 31-69 108-146 (198)
453 PF09744 Jnk-SapK_ap_N: JNK_SA 21.6 4.9E+02 0.011 21.8 10.9 23 33-55 87-109 (158)
454 PRK00409 recombination and DNA 21.6 9.1E+02 0.02 25.0 11.2 43 25-67 517-559 (782)
455 PF08738 Gon7: Gon7 family; I 21.5 2E+02 0.0044 22.8 4.6 29 17-45 50-79 (103)
456 KOG2991 Splicing regulator [RN 21.5 4E+02 0.0087 25.1 7.1 75 27-101 235-309 (330)
457 smart00340 HALZ homeobox assoc 21.5 1.9E+02 0.0041 20.0 3.8 19 45-63 8-26 (44)
458 KOG4593 Mitotic checkpoint pro 21.4 4.4E+02 0.0096 27.5 8.0 81 18-98 472-580 (716)
459 KOG4674 Uncharacterized conser 21.3 8.9E+02 0.019 28.2 10.8 68 18-85 133-200 (1822)
460 KOG0964 Structural maintenance 21.2 1.1E+03 0.025 26.0 12.7 46 21-66 418-463 (1200)
461 KOG0999 Microtubule-associated 21.2 6.4E+02 0.014 26.2 8.9 42 28-69 107-148 (772)
462 TIGR01000 bacteriocin_acc bact 21.1 5.3E+02 0.011 24.2 8.0 7 98-104 322-328 (457)
463 KOG3564 GTPase-activating prot 20.9 7.7E+02 0.017 25.2 9.3 96 9-107 34-139 (604)
464 PRK09343 prefoldin subunit bet 20.9 3.9E+02 0.0085 21.0 6.2 15 20-34 34-48 (121)
465 PF04751 DUF615: Protein of un 20.8 5E+02 0.011 21.7 8.1 36 8-48 50-85 (157)
466 PF08961 DUF1875: Domain of un 20.7 33 0.00071 31.1 0.0 42 20-61 121-162 (243)
467 PF04012 PspA_IM30: PspA/IM30 20.7 5.1E+02 0.011 21.7 9.8 36 28-63 98-133 (221)
468 KOG3433 Protein involved in me 20.6 6.1E+02 0.013 22.6 8.3 33 24-56 77-109 (203)
469 COG0172 SerS Seryl-tRNA synthe 20.4 8.1E+02 0.018 23.9 11.2 65 28-99 43-111 (429)
470 COG1842 PspA Phage shock prote 20.3 6E+02 0.013 22.4 9.1 38 26-63 97-134 (225)
471 PF08286 Spc24: Spc24 subunit 20.3 36 0.00079 26.5 0.2 37 35-71 6-42 (118)
472 PF13949 ALIX_LYPXL_bnd: ALIX 20.2 5.2E+02 0.011 22.3 7.3 41 23-63 24-64 (296)
473 PRK04325 hypothetical protein; 20.1 3.6E+02 0.0078 19.7 7.6 24 24-47 5-28 (74)
474 PF05600 DUF773: Protein of un 20.1 5.3E+02 0.012 25.4 8.0 48 18-65 443-490 (507)
475 PF11382 DUF3186: Protein of u 20.0 3.3E+02 0.0072 24.7 6.3 22 24-45 35-56 (308)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.30 E-value=1.4e-11 Score=86.85 Aligned_cols=58 Identities=33% Similarity=0.376 Sum_probs=53.6
Q ss_pred chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH
Q 046677 2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKA 59 (202)
Q Consensus 2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~ 59 (202)
.+|++.||+||++||+||+.|+.+||.+|..|..+|..|..++..|..++..|..++.
T Consensus 7 ~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 7 RRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999998888888777664
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.25 E-value=4.6e-11 Score=84.16 Aligned_cols=57 Identities=39% Similarity=0.479 Sum_probs=54.3
Q ss_pred chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHH
Q 046677 2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEK 58 (202)
Q Consensus 2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN 58 (202)
.+|+++||+||++||.||+.|+.+||.+|..|..+|..|..++..|...+..|.++|
T Consensus 7 ~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 7 ERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 368999999999999999999999999999999999999999999999999998887
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.01 E-value=1.4e-09 Score=96.81 Aligned_cols=71 Identities=27% Similarity=0.324 Sum_probs=67.2
Q ss_pred CchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 1 MCHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 1 ~aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
|.||.|+||+.|+-+|.|||..++|+|..|.+|..||..|..+...|++.+.+|.++|.+|..+|+.+.+.
T Consensus 70 ~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 70 VQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999866544
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=98.94 E-value=1.2e-09 Score=105.49 Aligned_cols=61 Identities=30% Similarity=0.427 Sum_probs=58.7
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
.|||+||+||..||+|||.|+.-||.+++.|..||..|+++...|.+....|.+||.++|.
T Consensus 284 QRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 284 QRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 3899999999999999999999999999999999999999999999999999999999975
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.93 E-value=4.5e-09 Score=72.28 Aligned_cols=48 Identities=31% Similarity=0.385 Sum_probs=44.3
Q ss_pred chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETE 50 (202)
Q Consensus 2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~ 50 (202)
.||. +||.||+|||.||+.|+.+||.+|..|..+|..|..+|+.|..+
T Consensus 7 ~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 7 ERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4677 99999999999999999999999999999999999999888753
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.25 E-value=1.5e-06 Score=82.83 Aligned_cols=61 Identities=28% Similarity=0.355 Sum_probs=56.0
Q ss_pred chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 046677 2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLK 62 (202)
Q Consensus 2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK 62 (202)
+||+|+|.+||+-||.||+.||+-||.+|..--+||.+|..++..|+..+..|-+.-+.|-
T Consensus 253 vRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 253 VRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred HHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998888888877766663
No 7
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.71 E-value=8.1e-07 Score=67.03 Aligned_cols=59 Identities=27% Similarity=0.286 Sum_probs=49.0
Q ss_pred chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHH
Q 046677 2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAV 60 (202)
Q Consensus 2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~e 60 (202)
+||.++||.+|+++|.||+.++.+||.++..|..+...|..+++.+..+...+...+..
T Consensus 32 ~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~ 90 (92)
T PF03131_consen 32 RRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQ 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999888888877777777666655544433
No 8
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.00 E-value=0.0018 Score=58.65 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=40.0
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 5 IVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLET 49 (202)
Q Consensus 5 iLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~ 49 (202)
-+.||+.|.+||.||+.+|..||.+|..|..+|..|...+..|.+
T Consensus 211 rlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~ 255 (279)
T KOG0837|consen 211 RLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKE 255 (279)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence 578999999999999999999999999999999998887765443
No 9
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.24 E-value=0.13 Score=41.15 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046677 13 IRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTV 92 (202)
Q Consensus 13 qRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~ 92 (202)
-.++.|=..+-++|..++..+..++..|...+..|..+...+..+...+..+...+.....-...-+...++|+.+++..
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888888888888888888888888888888888888888888777776667777788999999887
Q ss_pred hcc
Q 046677 93 LGE 95 (202)
Q Consensus 93 ~ge 95 (202)
+..
T Consensus 124 ~~~ 126 (151)
T PF11559_consen 124 LQQ 126 (151)
T ss_pred HHH
Confidence 654
No 10
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.05 E-value=0.032 Score=43.99 Aligned_cols=50 Identities=30% Similarity=0.265 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
.-+.+||..+..|-.+...|+..+..+-++++.|..||..||.+|..++.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999987765
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=95.90 E-value=0.031 Score=51.23 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=35.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 7 ANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 7 aNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
.|...|.|.|.||+.-.++|+.+...|+.+|.+|+.++..++++.
T Consensus 234 qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI 278 (294)
T KOG4571|consen 234 QNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREI 278 (294)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445569999999999999999999887777777776666554443
No 12
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.87 E-value=0.042 Score=43.76 Aligned_cols=48 Identities=29% Similarity=0.257 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
-+..||..+..+-.+...|+..+..+-++++.|..||..||.+|..++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478899999999999999999999999999999999999999998663
No 13
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.54 E-value=0.25 Score=36.20 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTV 92 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~ 92 (202)
.||..|.+|++.+..+..++...+..+..|..|+...-.+| ...-..+..|+.|++.|+..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l-------~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQL-------GDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777666666666665554444 33344455566666666543
No 14
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.50 E-value=0.16 Score=37.29 Aligned_cols=51 Identities=16% Similarity=0.029 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
..++-+++++...+.++..|..+-+..-........+|..||..++.+..+
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888887888888888888777666544
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.47 E-value=0.39 Score=35.49 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
-++.||.+|+.+-..++.|..++..|..++..|..+|.+|+.....+.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 467889999888888888888888888888888888888777665554
No 16
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.01 E-value=0.24 Score=43.11 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLG 101 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~~g 101 (202)
-|.||+.--+.|..||++|...+..+...+..|..|+..|+..+.++.+..+.. .+|.+|+..||..+..+-..++
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~~lEE~~~ 84 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAKSLEEENR 84 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888889999999999999999999999999888885444433 4567788889988876655544
No 17
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=94.31 E-value=0.36 Score=40.01 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=35.3
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLL 47 (202)
Q Consensus 3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlL 47 (202)
||-|+||-.|+-=|.|...--.+||.+-..|..+...|..+++.+
T Consensus 56 RRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~ 100 (135)
T KOG4196|consen 56 RRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRL 100 (135)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999998887776666666555544433
No 18
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.13 E-value=0.15 Score=41.06 Aligned_cols=46 Identities=26% Similarity=0.263 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
-+++||..+..|-.+...|+..+..+-++++.|..||..||.||..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4789999999999999999999999999999999999999999977
No 19
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=94.12 E-value=0.21 Score=44.59 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=35.0
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
|-=+|=++|+|||.+.+.-..|...+|..|+.||..|..+|..|.
T Consensus 198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~ 242 (269)
T KOG3119|consen 198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLK 242 (269)
T ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677899999999998888888888888888877776665433
No 20
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.98 E-value=0.38 Score=35.26 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
|+.|-.....|..||..|..++..+..+...|...|..-+.|+++|
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666666666666666666666666655
No 21
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.62 E-value=1.3 Score=33.85 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHhccc
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEI----QHMKTVLGEK 96 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Ev----qrLK~~~gei 96 (202)
-++.||.||+..-..++-|.-+|..|..++..|..|+..++..-..++ ..|+.|+.|- +||+..+|.+
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~-------~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELE-------RENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356788888777666666666666666666666666666554333332 2333443333 3677777654
No 22
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.51 E-value=1.4 Score=38.21 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 37 STTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 37 Na~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
.+++..+++........|..+|..|+..++.+..+...-++.++.++.++..==..+|
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~G 177 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYG 177 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444555556666667788899999888888877776666777777666543333343
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.06 E-value=2.1 Score=32.53 Aligned_cols=68 Identities=25% Similarity=0.346 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHhcccC
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEI----QHMKTVLGEKI 97 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Ev----qrLK~~~gei~ 97 (202)
++.||.||+.--...+-|.-+|..|.+++..|..|-..+....+++ +..|+.|+.|- +|||.++|.+.
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL-------~~eneqlk~e~~~WQerlrsLLGkme 77 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREAL-------ERENEQLKEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4556666555444333333333333333333333333333322222 23344444442 47888877553
No 24
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.98 E-value=1.9 Score=34.75 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
-|.-+|.++..|+.+++.|..+-+.+..+...|+.+|.+++.
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~ 65 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777766666667777777777765543
No 25
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=92.87 E-value=1.9 Score=32.06 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--------hhHHHHHHHHHHHHHHHhHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESN--------SLDAEKAVLKHRLEITLQKIH 73 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~--------~L~sEN~eLK~RLqsLeqq~~ 73 (202)
+-|.|..+..|..||-.|+-+|-.|++... .+..+|-+||..+.++..+..
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~ 60 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQ 60 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999887765 456778888777766654443
No 26
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.87 E-value=5.5 Score=35.20 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Q 046677 14 RAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTV- 92 (202)
Q Consensus 14 RSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~- 92 (202)
.+=+..-.+|.|++.+...|..|-.....+|.....+...|.+.-+.++...................|+.+|+++|..
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556899999999999999999999999999999999999988888777665555555555777789999999998
Q ss_pred hccc
Q 046677 93 LGEK 96 (202)
Q Consensus 93 ~gei 96 (202)
+|.-
T Consensus 105 lgl~ 108 (230)
T PF10146_consen 105 LGLE 108 (230)
T ss_pred cCCC
Confidence 6543
No 27
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=92.66 E-value=0.31 Score=48.62 Aligned_cols=62 Identities=27% Similarity=0.351 Sum_probs=50.8
Q ss_pred chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
+||-=+||.+|++=|.||.--|..||..|..|+.|..+|.. +...+..+-.++|.+|..|-+
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~-------Er~~~d~~L~~~kqqls~L~~ 553 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLR-------ERDELDSTLGVMKQQLSELYQ 553 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999998877654 345666777888888877754
No 28
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=92.52 E-value=1.4 Score=40.22 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=56.9
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 046677 14 RAKERKKLY-IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSL 78 (202)
Q Consensus 14 RSReRKkqY-I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaL 78 (202)
+.|+-++.| |.||+.+-..|+.||..|.+....|-.+++.|.++-.++++.|..+.+++......
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~v 154 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNTRV 154 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhHH
Confidence 455667766 68999999999999999999999999999999999999999999998888776433
No 29
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.20 E-value=1.1 Score=33.17 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
|..+-..+..|+.|+..|..+...|..++..|..||..|+..-.+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666666666666666666654433
No 30
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.80 E-value=3.9 Score=37.26 Aligned_cols=44 Identities=32% Similarity=0.384 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
.+++.++..|+.|...+..++..++.+...+..|-..|+.....
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555444444444444444444333
No 31
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.56 E-value=1 Score=32.52 Aligned_cols=49 Identities=20% Similarity=0.142 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
..|.+||.++..++....+|...++.-+++...|..+...|+.|+.+++
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4688999999999999999988888888888888777777777776654
No 32
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.53 E-value=7.1 Score=34.96 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=38.8
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhHhhHHHHHHHHHHHHHHHhH
Q 046677 5 IVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLE---------TESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 5 iLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq---------~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
+.+-.+.+.+.-.-+..-+++|+.+|..++.+..+++.++...+ +++..|..|-..++.|+.+++.+
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~e 111 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDE 111 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555666666777777777777777766666554 33444555555555555555443
No 33
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.13 E-value=1.1 Score=37.59 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI 82 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L 82 (202)
-|.+|+.++..|+.++..|...+......+..|..|...|...+..++....-....|..|
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444444444444444444444444444334444444
No 34
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.04 E-value=2 Score=37.54 Aligned_cols=42 Identities=29% Similarity=0.347 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
.-|+.+|..|+.+|.+|....+.+......|.+++..|+-.+
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 457889999999999999999999999999999999998877
No 35
>PRK00295 hypothetical protein; Provisional
Probab=90.60 E-value=2.2 Score=30.99 Aligned_cols=45 Identities=20% Similarity=0.128 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
.|.+||.++...+.....|...|+.-++....|..+-..|+.|+.
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999988888777777666655555544443
No 36
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.59 E-value=1.9 Score=31.62 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
..|.+||.+|...+....+|..-|+.-++....|..+-+.|+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888877777666665555544444433
No 37
>PRK00736 hypothetical protein; Provisional
Probab=90.55 E-value=2 Score=31.16 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
.|.+||.++...+.....|...|+.-++....|..+-..|..|+
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999888888888777666655554444444433
No 38
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=90.55 E-value=2 Score=32.60 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
-++|..++..|+.....|..++.....++..|.+||..|..=|..|.
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999999999999999988777663
No 39
>PRK04325 hypothetical protein; Provisional
Probab=90.51 E-value=1.9 Score=31.74 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
.|.+||.+|...+..+..|...|+.-++....|..+-+.|..
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999988888888877766666555544444433
No 40
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=90.48 E-value=5.1 Score=30.48 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=54.8
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
+.|.+=+++--.|--+..-..+++.+|+.|....+.|..++.-....+..|..-|.++..||.+.
T Consensus 15 ~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 15 AAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666999999999999999999999999999999999999999998654
No 41
>PRK02119 hypothetical protein; Provisional
Probab=90.35 E-value=2 Score=31.61 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
..|.+||.+|...+....+|...|+.-++....|..+-..|+.
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777666665555555444444433
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.00 E-value=2.7 Score=36.51 Aligned_cols=8 Identities=25% Similarity=0.140 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 046677 61 LKHRLEIT 68 (202)
Q Consensus 61 LK~RLqsL 68 (202)
|+.+.+.+
T Consensus 137 L~~~n~~L 144 (206)
T PRK10884 137 LKEENQKL 144 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 43
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.72 E-value=3.9 Score=41.35 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
.-+.+++.+|..|+.||..|...+..+.+....|.++-..++.++
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888877777777777766665544
No 44
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=89.60 E-value=5.4 Score=29.28 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
+..||.||..|=.-...|..++..|..+...+.+|+..|+.+.+.-
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~A 47 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQA 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888877777777777777777777777777777766443
No 45
>PRK04406 hypothetical protein; Provisional
Probab=89.38 E-value=2.6 Score=31.26 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAE 57 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sE 57 (202)
.|.+||.++...+....+|...|+.-++....|..+
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~q 47 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQ 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666665555544444433
No 46
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.37 E-value=9.3 Score=32.07 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 046677 33 LRSNSTTLTAQLTLLETESNSLDAEKAVL 61 (202)
Q Consensus 33 LQ~ENa~LsaqltlLq~~~~~L~sEN~eL 61 (202)
|..|...|..++..++.....|..||.+|
T Consensus 149 l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 149 LQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 47
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.71 E-value=4 Score=30.97 Aligned_cols=44 Identities=18% Similarity=0.364 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
-|.=|.-+|..|..+|.+|..+...++.....|..||..||..-
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888889999999999999999999999999998743
No 48
>PRK00846 hypothetical protein; Provisional
Probab=88.32 E-value=3.5 Score=31.08 Aligned_cols=45 Identities=16% Similarity=0.032 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
..|.+||.++...+.-...|...++..++....|...-..|+.||
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888877777777777766665555554444444444433
No 49
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.56 E-value=13 Score=29.86 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
++.|...+..++.|.+.+..++..+......+..|-..|-...+.+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555544444444433
No 50
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.54 E-value=14 Score=37.04 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHhhHhhHHHHHHHHHH
Q 046677 9 RMSAIRAKERKKLYIYMLEHKMHNLRSN------------------------STTLTAQLTLLETESNSLDAEKAVLKHR 64 (202)
Q Consensus 9 ReSAqRSReRKkqYI~ELE~kVq~LQ~E------------------------Na~LsaqltlLq~~~~~L~sEN~eLK~R 64 (202)
.+.--+-...+...|.+||.++..++.. |..|+.+++.++..+..|+.+|.+|+..
T Consensus 110 ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~ 189 (617)
T PF15070_consen 110 NEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSA 189 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 3333333345677788888777776654 4566777788888888888888888777
Q ss_pred HHHHHhHH-HHHHHHHHHHHHHHHHHHHHh
Q 046677 65 LEITLQKI-HLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 65 LqsLeqq~-~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
|++-.+-. .|...++ .|..++..++..+
T Consensus 190 lq~Eq~~~keL~~kl~-~l~~~l~~~~e~l 218 (617)
T PF15070_consen 190 LQSEQHVKKELQKKLG-ELQEKLHNLKEKL 218 (617)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 76654433 2333333 2455555555544
No 51
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=87.42 E-value=3.3 Score=40.45 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
-.+|||.++..|+.|...++.+...++++...|.+||..|+.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888888888888888888888766
No 52
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=87.27 E-value=6.3 Score=30.13 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
|.=|--+|..|..+|..|..++..+......|..||..||....
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666666667778888888877443
No 53
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=87.04 E-value=10 Score=37.15 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHH--------
Q 046677 18 RKKLYIYMLEHKMHNLR--------------SNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQ-------- 75 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ--------------~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lk-------- 75 (202)
=|..|-+|+|+++..-+ .+...+..++..|.+.+..---||..|-..+++-++..+-.
T Consensus 390 MKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELn 469 (593)
T KOG4807|consen 390 MKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELN 469 (593)
T ss_pred HHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 36778888888765433 35556677777777777777778888876666554443322
Q ss_pred ---HHHHHHHHHHHHHHHHHhc
Q 046677 76 ---DSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 76 ---daLnE~Lk~EvqrLK~~~g 94 (202)
.-||..|.+||.|||..+.
T Consensus 470 aHNQELnnRLaaEItrLRtllt 491 (593)
T KOG4807|consen 470 AHNQELNNRLAAEITRLRTLLT 491 (593)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc
Confidence 1367778999999998874
No 54
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=86.79 E-value=3.8 Score=34.93 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 30 MHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 30 Vq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
+..+..||..|..++..|+..+..|..||..|+.++..++..
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888888888888888877776543
No 55
>PRK11637 AmiB activator; Provisional
Probab=86.42 E-value=19 Score=33.46 Aligned_cols=50 Identities=4% Similarity=0.005 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
..-+.++..++..++.+...+..+|..+..+...+..+-..+..++..++
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~ 109 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELN 109 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444443
No 56
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=86.36 E-value=7.6 Score=30.14 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=45.3
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHH
Q 046677 10 MSAIRAKERKK-LYIYMLEHKMHNLRSNSTTL--TAQLTLLETESNSLDAEKAVLKHRLEITLQKIHL 74 (202)
Q Consensus 10 eSAqRSReRKk-qYI~ELE~kVq~LQ~ENa~L--saqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~L 74 (202)
..|.|++..+. .-+.+.+.++..++++...| +..+..|+-....+..+-+++..++..+.....+
T Consensus 30 ~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 30 TYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34445554443 44555578888888877777 7777777777888888888888888888655443
No 57
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.50 E-value=2.9 Score=28.37 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 33 LRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 33 LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
|+.+-..|+...+.|..++..|..||..|+..+..+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666666666554443
No 58
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=85.38 E-value=14 Score=27.87 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=38.5
Q ss_pred hhhHHhhhhHHHHHHHHH------HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---hhHhhHHHHHHHHHHHH
Q 046677 3 HRIVANRMSAIRAKERKK------LYIYM-------LEHKMHNLRSNSTTLTAQLTLLET---ESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 3 KRiLaNReSAqRSReRKk------qYI~E-------LE~kVq~LQ~ENa~LsaqltlLq~---~~~~L~sEN~eLK~RLq 66 (202)
|.|..|.+..+.+-.++- ..|-+ |..++..|+.+-..++.+|..+.. +...|..+-++||..+.
T Consensus 5 k~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~ 84 (108)
T PF02403_consen 5 KLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIK 84 (108)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH
Confidence 455666666666655552 23333 344455555555555555555554 35666667777777766
Q ss_pred HHHh
Q 046677 67 ITLQ 70 (202)
Q Consensus 67 sLeq 70 (202)
.++.
T Consensus 85 ~le~ 88 (108)
T PF02403_consen 85 ELEE 88 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 59
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.88 E-value=7.3 Score=36.15 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046677 32 NLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEK 96 (202)
Q Consensus 32 ~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei 96 (202)
..+.|++.|.++|..++..+..+++||-+|...|.+. +++. ..|..|+..|+-.+.++
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s------ke~Q-~~L~aEL~elqdkY~E~ 288 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS------KESQ-RQLQAELQELQDKYAEC 288 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999988765 2222 23566777777666544
No 60
>PRK11637 AmiB activator; Provisional
Probab=84.75 E-value=34 Score=31.87 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
|.+++.++..++.+...+..++..+..+...+..+-+.+...|..++.+
T Consensus 56 i~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~e 104 (428)
T PRK11637 56 IAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQ 104 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444333
No 61
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.59 E-value=13 Score=32.50 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 046677 78 LNDQIRSEIQHMKTVL 93 (202)
Q Consensus 78 LnE~Lk~EvqrLK~~~ 93 (202)
....+..|+..||..+
T Consensus 97 ~~~~le~el~~lrk~l 112 (312)
T PF00038_consen 97 ERKDLEEELESLRKDL 112 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhh
Confidence 3344455555555444
No 62
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=83.72 E-value=7.3 Score=38.13 Aligned_cols=42 Identities=26% Similarity=0.311 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 29 KMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 29 kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
.|.+|-.+...++.++..+..++..|..||..||.|...+.+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 456666666667777777777777777777777776666544
No 63
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.56 E-value=10 Score=39.73 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
.+|+++|..-+..+.....++-.++..+.+....|..||.+|...++.. -..+..|++++.-||.-.|-+.+.
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~-------~s~hsql~~q~~~Lk~qLg~~~~~ 721 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF-------ISEHSQLKDQLDLLKNQLGIISSK 721 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcccccc
Confidence 5789999999999999999999999999999999999999998877554 355666777888899999877776
Q ss_pred Cccc
Q 046677 100 LGAL 103 (202)
Q Consensus 100 ~g~~ 103 (202)
.+.+
T Consensus 722 ~~~~ 725 (970)
T KOG0946|consen 722 QRDL 725 (970)
T ss_pred hhhH
Confidence 6544
No 64
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.50 E-value=9.9 Score=31.01 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=6.2
Q ss_pred HhhHHHHHHHHHHHHH
Q 046677 52 NSLDAEKAVLKHRLEI 67 (202)
Q Consensus 52 ~~L~sEN~eLK~RLqs 67 (202)
..|..|+..|..||..
T Consensus 119 ~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 119 EELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 65
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=83.47 E-value=18 Score=27.82 Aligned_cols=58 Identities=17% Similarity=0.266 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHH------hhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 32 NLRSNSTTLTAQLTLLET------ESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 32 ~LQ~ENa~LsaqltlLq~------~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
.+..++..|..+|..|+. +.+....||..|+..+..+..=. ...-.|.+..||..|+.
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~ 84 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRD 84 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHh
Confidence 445566666666666664 33556678887777665553333 34566777778877765
No 66
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=83.46 E-value=17 Score=36.78 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHh
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQD---SLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lkd---aLnE~Lk~EvqrLK~~~ 93 (202)
|..|..++..|..+...+...+..+.+++.....++..+..+|...+....-+. .++..|..+|..||..+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 888888999999999999999999999999999999999888888877777666 77888888888888755
No 67
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=83.34 E-value=12 Score=36.80 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLET 49 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~ 49 (202)
+.+++.++..|..+|..|.++++.|++
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554433
No 68
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.15 E-value=27 Score=29.95 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=30.0
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
+..|.+..|-+-.+...+.+...+|.++..-..+..++...+..|+...
T Consensus 92 ~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki 140 (190)
T PF05266_consen 92 RSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKI 140 (190)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3455667777777777777777777777766444444444444444433
No 69
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.69 E-value=26 Score=29.00 Aligned_cols=64 Identities=25% Similarity=0.269 Sum_probs=49.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 7 ANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 7 aNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
.|++.+-+--+-+++.|..|+.++..+-.+...|...+..+..+...|.-+-...+.++..|+.
T Consensus 38 ~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 38 ENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777888888888888888888888888888887777777777777777777666653
No 70
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.67 E-value=32 Score=34.66 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
+.|+..++.+-..+......|..++..-+.++..|..+|.+||..+.
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888888888888888888888888888876553
No 71
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.10 E-value=29 Score=29.56 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 16 KERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 16 ReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
....+..+.+++.++..|..+...+..++....+....+...+...+..+........-.....+.+..++...+....
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 136 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLS 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666666666666666666666665555552222222222222333445555554443
No 72
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=81.77 E-value=6.3 Score=28.19 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI 82 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L 82 (202)
|.|||.+|..+.+.. ..+..||.+|+..++.+++..+-.=.+.|..
T Consensus 2 i~elEn~~~~~~~~i--------------~tvk~en~~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 2 IDELENELPRIESSI--------------NTVKKENEEISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665555443 3455667777777777766554333445544
No 73
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.66 E-value=32 Score=29.29 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 13 IRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 13 qRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
..-..+++..+..|..++..+..++.....++..+....
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666665555555555444433
No 74
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.63 E-value=33 Score=29.45 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=24.3
Q ss_pred hhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 50 ESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 50 ~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
+...+..+-.+|...|..+..++..-+...++..+||.+|+..+.
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~ 169 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAE 169 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555556666655554
No 75
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.19 E-value=25 Score=36.34 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhcccCCCCcc
Q 046677 80 DQIRSEIQHMKTVLGEKIPNLGA 102 (202)
Q Consensus 80 E~Lk~EvqrLK~~~gei~~~~g~ 102 (202)
..|.+|++|||..+---.+++..
T Consensus 193 akLEaEC~rLr~l~rk~lpgpaa 215 (769)
T PF05911_consen 193 AKLEAECQRLRALVRKKLPGPAA 215 (769)
T ss_pred HHHHHHHHHHHHHHhccCCChHH
Confidence 35689999999988765555543
No 76
>PRK09039 hypothetical protein; Validated
Probab=81.17 E-value=46 Score=30.75 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 30 MHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 30 Vq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
|..|..+...|+.++..++...........+.+.+++.+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444333
No 77
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=81.06 E-value=22 Score=27.04 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=60.3
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH-HHHhHHHHHHH
Q 046677 4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE-ITLQKIHLQDS 77 (202)
Q Consensus 4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq-sLeqq~~Lkda 77 (202)
+|-..+.....+=..|..-+..||.++..|..|.+.-..+.-.+.+....|..|++.|+..+. +-+-...|++.
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~ 81 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKET 81 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444566667777778888899999999999999999999999999999999999999998663 34445555553
No 78
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.76 E-value=55 Score=32.80 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAE 57 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sE 57 (202)
..|+.++..|+.++..|...+.....++..|..+
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~ 193 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ 193 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333333333333
No 79
>PF15294 Leu_zip: Leucine zipper
Probab=80.75 E-value=5.9 Score=36.30 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
|..++..|+.||.+|+.++..++..++...-|+..|...|..+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~l 172 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKEL 172 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555554444433
No 80
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=80.46 E-value=6.3 Score=30.37 Aligned_cols=65 Identities=18% Similarity=0.278 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 28 HKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 28 ~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
.++..|+.-...--..-+.+..++..|..|...|+.+++-==.=.++. ..|-.|++|+.||+...
T Consensus 3 dkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A-~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 3 DKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFA-MENIRLREELRRLQSFY 67 (86)
T ss_pred hHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 445555554444444445555566677777777766554322223333 66888999999999876
No 81
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=80.20 E-value=16 Score=28.27 Aligned_cols=45 Identities=22% Similarity=0.252 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHH
Q 046677 29 KMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIH 73 (202)
Q Consensus 29 kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~ 73 (202)
.+..+..+...+..+++.++.++..+...|.+|-..+..+.....
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~ 48 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQK 48 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666666666666666666666666665555444433
No 82
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=79.72 E-value=22 Score=29.53 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhHhhHHHHHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLE-TESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq-~~~~~L~sEN~eLK~RLqsLe 69 (202)
.|+|.....+....++|+.++..+. .+...+..++..|+..++.++
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~ 93 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLR 93 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566666666654433 334455555555555554443
No 83
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=79.14 E-value=5.8 Score=35.36 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 046677 16 KERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNS 53 (202)
Q Consensus 16 ReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~ 53 (202)
|.|=+....|||.++..+..++..|..+++.|+.++..
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~k 125 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVK 125 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556777777777777777776666655554433
No 84
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=79.11 E-value=20 Score=28.65 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
+|=..|..|+.....+..++..|......|..||..|+.
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777777777755
No 85
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=79.09 E-value=32 Score=27.69 Aligned_cols=54 Identities=24% Similarity=0.169 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 14 RAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 14 RSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
+|.+-=+--.++|-..-..|.+-+..|.++...+...+..|.++-.+++..+..
T Consensus 23 ~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 23 RSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444445555555555544444
No 86
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=78.98 E-value=3 Score=32.66 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEK---AVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEK 96 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN---~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei 96 (202)
..-..++|..+..+..|...|++.+ .++-+.+...+. ..+..+...++.+..=.+.+.+.|..++..||.++..+
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~ 84 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASL--FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESM 84 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445667777777788777777653 333333333333 23444555555555555677788889999999999877
Q ss_pred CCCCcc
Q 046677 97 IPNLGA 102 (202)
Q Consensus 97 ~~~~g~ 102 (202)
.+..+.
T Consensus 85 ~~~~~~ 90 (100)
T PF06428_consen 85 ESESDD 90 (100)
T ss_dssp ------
T ss_pred cccccc
Confidence 766543
No 87
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.93 E-value=3.9 Score=29.72 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 35 SNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 35 ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
.|...|+.+|..|...+..|..||..||.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666666666666677777777665
No 88
>PRK09039 hypothetical protein; Validated
Probab=78.68 E-value=25 Score=32.43 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHH---HHHHHHHHh
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK--------IHLQDSLNDQIRS---EIQHMKTVL 93 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq--------~~LkdaLnE~Lk~---EvqrLK~~~ 93 (202)
|+.++..+..+.++..+++..|+.+...|......|...|.+.+.. ..+...++.+|.. |+.++|..+
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344444444444444555555555555555555554444444433 3344456666644 444544433
No 89
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=78.44 E-value=26 Score=26.36 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
-++-+-.+...+-.+...++..-..++.+...=.+|...+|..+-.||..-. .+.+...+||.+||.-+.
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~---kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR---KMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3555667777788888888888888888888889999999999988886654 455667889999998663
No 90
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=78.39 E-value=13 Score=29.38 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHR 64 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~R 64 (202)
+|=..|..++.....|..++..|......|..||..|+..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~E 44 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIE 44 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777778877777777777777777663
No 91
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.33 E-value=30 Score=34.55 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eL 61 (202)
...+.+|+..+...+.++..|..+...+......+..|+..|
T Consensus 170 ~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L 211 (546)
T PF07888_consen 170 REEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESL 211 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333333333333333
No 92
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=78.21 E-value=44 Score=28.82 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESN----SLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEK 96 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~----~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei 96 (202)
.|...||..+..|+.+...++.+|..+..... ....+.+.|..+-..+.....-.+.-...|..||.+||...++.
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888899999988888888877765432 22334445655555555555555566777888888888776544
No 93
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.98 E-value=36 Score=27.75 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAE 57 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sE 57 (202)
++++.+|..|+.++..+-.+|+.|+..+..|..+
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~e 50 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEE 50 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333333333
No 94
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.92 E-value=33 Score=31.34 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046677 18 RKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTV 92 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~ 92 (202)
+..+-+.+||.+...|..|...|..+...+.++-...-.+.+.+...+..+..+..-..+..+.....+.+|+..
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555555555555555555555555555555555566666666555555555555566667777777753
No 95
>smart00338 BRLZ basic region leucin zipper.
Probab=77.72 E-value=10 Score=26.38 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=12.9
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 43 QLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 43 qltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
.+..|+.....|..+|..|+.++..+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l 52 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERL 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544444
No 96
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=77.43 E-value=51 Score=33.01 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
+.+..+..++.|.+.+...+..+..+...|..||.-|...|.
T Consensus 145 ~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 145 DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA 186 (546)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 333444444444444444444444444444444444444333
No 97
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.34 E-value=56 Score=29.62 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLK 62 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK 62 (202)
..|..++..+..+....+..+..++.+...+..+-.+++
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 98
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=77.23 E-value=27 Score=28.93 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEK 96 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei 96 (202)
..+|.-||+.+...+.+...+..........+..|..+-.++...+..++....-...-++.|..+++..+.-+.++
T Consensus 23 e~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 23 EDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777666665555544433333333334444444333333333333333344555555555554444443
No 99
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=77.10 E-value=21 Score=30.42 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 41 TAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 41 saqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
..++..=++.+..|..-|.-||..|+.+ ...|++|..|+.+|.....
T Consensus 66 l~rLeEEqqR~~~L~qvN~lLReQLEq~-------~~~N~~L~~dl~klt~~~~ 112 (182)
T PF15035_consen 66 LIRLEEEQQRSEELAQVNALLREQLEQA-------RKANEALQEDLQKLTQDWE 112 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3444444566777777888888777655 3667777777777766554
No 100
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.03 E-value=39 Score=27.61 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
..+.+|+.+...++....++...+..+......+..+....+.++.+++
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 136 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLD 136 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555545555555555443
No 101
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=76.69 E-value=47 Score=31.00 Aligned_cols=65 Identities=12% Similarity=0.209 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046677 28 HKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTV 92 (202)
Q Consensus 28 ~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~ 92 (202)
.++..|..||..|....+.|++....|..+-..=-..+..+|.+..-.-...+.|..|+.++|.-
T Consensus 60 ~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE 124 (307)
T PF10481_consen 60 NEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSE 124 (307)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454444444444444444433333322333333333332223344454455444443
No 102
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.56 E-value=41 Score=28.59 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhHhhHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHH
Q 046677 18 RKKLYIYMLEHKMHNLRSNSTTLTAQLTLLE------TESNSLDAEKAVLKHRLEITLQKIHL----QDSLNDQIRSEIQ 87 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq------~~~~~L~sEN~eLK~RLqsLeqq~~L----kdaLnE~Lk~Evq 87 (202)
.+..-+..|..++..+..+...|..++.... .+...+..+..+|+.++..+..+..- --..-+.+++++.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~ 145 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIK 145 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4455566777777777777777776666554 23344455555555555444433321 1123566688888
Q ss_pred HHHHHhcccCCC
Q 046677 88 HMKTVLGEKIPN 99 (202)
Q Consensus 88 rLK~~~gei~~~ 99 (202)
.++.++..+.|+
T Consensus 146 ~~~~~anrwTDN 157 (188)
T PF03962_consen 146 IAKEAANRWTDN 157 (188)
T ss_pred HHHHHHHHHHhh
Confidence 888888766653
No 103
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=76.33 E-value=10 Score=29.47 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 38 TTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 38 a~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
..+..++..++.++..+..+|..|+.++..+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555556666666555554
No 104
>PF15294 Leu_zip: Leucine zipper
Probab=76.26 E-value=13 Score=34.14 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=46.2
Q ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 046677 44 LTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIP 98 (202)
Q Consensus 44 ltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~ 98 (202)
..++..+...|..||..||.|+.+++..+-..=-....|...+..|+.+.|..-+
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~ 181 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKG 181 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3458899999999999999999999999887766788888888889887765544
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.09 E-value=31 Score=31.26 Aligned_cols=8 Identities=13% Similarity=0.497 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 046677 86 IQHMKTVL 93 (202)
Q Consensus 86 vqrLK~~~ 93 (202)
|.+||..+
T Consensus 278 v~~Lk~~~ 285 (325)
T PF08317_consen 278 VKRLKAKV 285 (325)
T ss_pred HHHHHHHH
Confidence 33344333
No 106
>PHA02562 46 endonuclease subunit; Provisional
Probab=76.07 E-value=69 Score=30.15 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eL 61 (202)
..|+.+|..|+.+...+..++..+..+...+..+..++
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333333
No 107
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=76.05 E-value=14 Score=28.64 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRS-NSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~-ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
..|-+.=|.||..|.. =-+....++..|+.++..+..||..|+.++....
T Consensus 26 ~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 26 ALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777752 2244666777777777777777777777776544
No 108
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=75.62 E-value=44 Score=35.86 Aligned_cols=61 Identities=26% Similarity=0.226 Sum_probs=29.9
Q ss_pred hHHhhhhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 5 IVANRMSAIRAKER-----------------KKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 5 iLaNReSAqRSReR-----------------KkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
+|+++..|+|.|.- +..-|++||.+|..++.....+.+........+..|..+-..++.+|
T Consensus 415 rLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L 492 (1041)
T KOG0243|consen 415 RLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKL 492 (1041)
T ss_pred HHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46777888876532 22334555555555555555544444433333334444433333333
No 109
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=75.14 E-value=11 Score=30.56 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
|-..|-.|++....|+.++....+++..|.+||.+|-+=|+.+
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 5567888999999999999999999999999999998866654
No 110
>PRK02224 chromosome segregation protein; Provisional
Probab=75.13 E-value=52 Score=33.05 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
+.+++.++..+..+...+...+..+......+..+-.+++.++..+
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444
No 111
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=74.93 E-value=2.2 Score=32.73 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
.||..|...+..|..++..|..++..|......+......|+..|.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 5899999999999999999999999999888888888777776553
No 112
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=74.77 E-value=17 Score=40.83 Aligned_cols=79 Identities=25% Similarity=0.261 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
Q 046677 15 AKERKKLYIYMLEHKM-------HNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK-IHLQDSLNDQIRSEI 86 (202)
Q Consensus 15 SReRKkqYI~ELE~kV-------q~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq-~~LkdaLnE~Lk~Ev 86 (202)
.+.+...-+.+|..+| .-|+.++.+|.+++.....+...|..||..-|.|-+.+..+ ...--...+.|+.||
T Consensus 1237 e~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei 1316 (1822)
T KOG4674|consen 1237 ENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEI 1316 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 3444444455555544 45566777778888888888888888888888888887655 333334455566666
Q ss_pred HHHHHHh
Q 046677 87 QHMKTVL 93 (202)
Q Consensus 87 qrLK~~~ 93 (202)
.+|+.-.
T Consensus 1317 ~~Lk~el 1323 (1822)
T KOG4674|consen 1317 SRLKEEL 1323 (1822)
T ss_pred HHHHHHH
Confidence 6666544
No 113
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=74.56 E-value=18 Score=33.75 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=45.0
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 13 IRAKERKKL----YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 13 qRSReRKkq----YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
-.-|.||.. ||--+|.++++...|..+|..+++.|+..+..+.+.-.+.|..|+.+..
T Consensus 52 ntervrklh~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 52 NTERVRKLHIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 346889976 4555889999999999999999998888887777777777776666643
No 114
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=74.17 E-value=24 Score=25.23 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHH
Q 046677 34 RSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQ 75 (202)
Q Consensus 34 Q~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lk 75 (202)
......+..++..++.+...+..||..|+.++..+....++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe 64 (85)
T TIGR02209 23 QHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIE 64 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 345556666777777777777888888888777766544433
No 115
>PF15058 Speriolin_N: Speriolin N terminus
Probab=73.93 E-value=6.8 Score=34.50 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=31.2
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046677 47 LETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHM 89 (202)
Q Consensus 47 Lq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrL 89 (202)
+.+....|+.||.+||..+..+.....+|.+|.|+-..-+.|-
T Consensus 10 lrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~~r~ 52 (200)
T PF15058_consen 10 LRHQIERLVRENEELKKLVRLIRENHELKSALGEACAEPSQRQ 52 (200)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 4556667888888888888888877777877777765555443
No 116
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=73.92 E-value=11 Score=33.81 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=26.4
Q ss_pred hhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 046677 50 ESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKI 97 (202)
Q Consensus 50 ~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~ 97 (202)
....|..||.+||.++..+..+.. ...+.+++|-.+||..++-..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~---~~~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE---ILTQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCcc
Confidence 334566677777776655522222 223447778888888776543
No 117
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=73.92 E-value=29 Score=28.07 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
...|+.=..=+.|-++|.++|+.|+-+..++..=|..|+-|+.-||
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE 59 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLE 59 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677778888888888888888777777777776665
No 118
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=73.88 E-value=73 Score=32.59 Aligned_cols=84 Identities=10% Similarity=0.217 Sum_probs=47.0
Q ss_pred hhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH---HHHHHHHhHHHHHHHHHHHHH
Q 046677 8 NRMSAIRAKERK-KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLK---HRLEITLQKIHLQDSLNDQIR 83 (202)
Q Consensus 8 NReSAqRSReRK-kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK---~RLqsLeqq~~LkdaLnE~Lk 83 (202)
+|..+.+.+..+ ...+.+|++++..++.++..|..+++.+.++...=.-.+.+++ -++..|+....=+..--+.|+
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455544444 3456666666666666666666666666655443333334333 344555555555555566666
Q ss_pred HHHHHHHH
Q 046677 84 SEIQHMKT 91 (202)
Q Consensus 84 ~EvqrLK~ 91 (202)
.++.+|+.
T Consensus 502 ~~l~~l~k 509 (652)
T COG2433 502 RKLAELRK 509 (652)
T ss_pred HHHHHHHH
Confidence 66666663
No 119
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.85 E-value=55 Score=27.80 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
..+++.++..|+.++..|..++..+......+...+.+.+.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777777777766666655544
No 120
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=73.73 E-value=28 Score=30.34 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=26.5
Q ss_pred HhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046677 49 TESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEK 96 (202)
Q Consensus 49 ~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei 96 (202)
.....+..||.+||.++..++.+.. ..+.+++|-.+||..++-.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~----~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQ----ELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCc
Confidence 4455666666666666655543322 2246677888888877543
No 121
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.68 E-value=13 Score=30.27 Aligned_cols=13 Identities=0% Similarity=0.470 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 046677 79 NDQIRSEIQHMKT 91 (202)
Q Consensus 79 nE~Lk~EvqrLK~ 91 (202)
++.|.+.+..|+.
T Consensus 125 ~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 125 IEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444444
No 122
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=73.60 E-value=17 Score=25.22 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=12.9
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 43 QLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 43 qltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
.+..|+.....|..+|..|+..+..+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444
No 123
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=73.50 E-value=65 Score=32.68 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 046677 15 AKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSL 78 (202)
Q Consensus 15 SReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaL 78 (202)
|++.-.+.-.+|+.+|..|+.++..+...|..+..+...-.++-.-...++........|-+|.
T Consensus 73 ~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay 136 (632)
T PF14817_consen 73 SRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAY 136 (632)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444567788888888888888888888888777766655544444444443333333343
No 124
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.45 E-value=36 Score=30.00 Aligned_cols=67 Identities=13% Similarity=0.229 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
.|+.+...++.++..|.........+...|..+-.++-..+..|+....-++...+.|+.++...+.
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666666666666667777788888888888888888888888888777665554
No 125
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=73.23 E-value=29 Score=28.53 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 33 LRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 33 LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
|......-...++.+.+....+..++..++..|..
T Consensus 68 Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~ 102 (177)
T PF13870_consen 68 LKKKIGKTVQILTHVKEKLHFLSEELERLKQELKD 102 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444433
No 126
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=73.12 E-value=61 Score=32.50 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046677 17 ERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI 82 (202)
Q Consensus 17 eRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L 82 (202)
.+..+-+.+|..+|..|..+...+...+..+......+..+..+.+.....++.+..+++...+.|
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL 389 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELL 389 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777777777777777777777777777777777777777777777766555555
No 127
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=72.51 E-value=20 Score=34.21 Aligned_cols=29 Identities=21% Similarity=0.100 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 39 TLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 39 ~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
++-+++..-.++|..+..|-..+|.-+..
T Consensus 158 E~eeqLaeS~Re~eek~kE~er~Kh~~s~ 186 (405)
T KOG2010|consen 158 EQEEQLAESYRENEEKSKELERQKHMCSV 186 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 128
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.98 E-value=16 Score=25.38 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 38 TTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 38 a~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
..+..++..++.+...+..+|..|+.+++.+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555555665555555
No 129
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=71.80 E-value=46 Score=37.93 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046677 9 RMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQH 88 (202)
Q Consensus 9 ReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Evqr 88 (202)
.+++.+++.-=...+.+.|+++..|+.|..+|+..+..+.+....+..|..++..++..+.-+.-..-+....|..||..
T Consensus 1648 ~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~ 1727 (1930)
T KOG0161|consen 1648 LEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQ 1727 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Confidence 44555555555555666666666666666666666666666666666666666555555433222222334444444444
Q ss_pred HHHHhcc
Q 046677 89 MKTVLGE 95 (202)
Q Consensus 89 LK~~~ge 95 (202)
|...+.+
T Consensus 1728 l~~elee 1734 (1930)
T KOG0161|consen 1728 LQSELEE 1734 (1930)
T ss_pred HHHHHHH
Confidence 4444433
No 130
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=71.61 E-value=45 Score=33.57 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKI 72 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~ 72 (202)
|+.+..+...++.||++|..+|..++++...+..|+.++..-|+++-+..
T Consensus 221 l~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~ 270 (596)
T KOG4360|consen 221 LQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQ 270 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44455556677899999999999999999999999999999998875443
No 131
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=71.56 E-value=89 Score=30.38 Aligned_cols=53 Identities=23% Similarity=0.185 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKI 72 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~ 72 (202)
..-...|+..+..++++..++..++.....+...+...+..+..+|..++.+.
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666655544
No 132
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=71.50 E-value=80 Score=31.67 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=27.8
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 48 ETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 48 q~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
......+.+|.+-+|.++..|+.+..-.-+.|..|..++.++|.
T Consensus 147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44445566666677777766666665555666666666666664
No 133
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.44 E-value=63 Score=27.44 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHH
Q 046677 39 TLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIH-LQDSLNDQIRSEIQHMKTV 92 (202)
Q Consensus 39 ~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~-LkdaLnE~Lk~EvqrLK~~ 92 (202)
.+..++..|..+...|..+-.+|+.+++.++.... .+.........||.-||..
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433332 1223333344555555443
No 134
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=71.37 E-value=1.1e+02 Score=31.25 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhhH
Q 046677 37 STTLTAQLTLLETESN 52 (202)
Q Consensus 37 Na~LsaqltlLq~~~~ 52 (202)
...|...+..++.++.
T Consensus 589 ~e~L~~aL~amqdk~~ 604 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQ 604 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444445554443
No 135
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.35 E-value=68 Score=27.79 Aligned_cols=44 Identities=23% Similarity=0.205 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
|..++..|..|...|...+..++.....+..+-..|..++..++
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444443
No 136
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=71.21 E-value=19 Score=29.38 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLN 79 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLn 79 (202)
+.+||.....++.++.+|..++..++.+...+...-..++..+...+....-.++++
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~ 79 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLN 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Confidence 456666666677777777777777777777777777777776666655544444443
No 137
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.18 E-value=27 Score=31.84 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEI 86 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Ev 86 (202)
+.+.+.++...+.+...+..++..|+.++.....+...|...+..++....-...|.+.|..|.
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Confidence 3455556666666666677777777777777777777777776666555444444555554443
No 138
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=71.00 E-value=69 Score=31.45 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----hhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESN-----SLDAEKAVLKHRLEITLQKIHLQDSLNDQ 81 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~-----~L~sEN~eLK~RLqsLeqq~~LkdaLnE~ 81 (202)
++.+.+.|..+..|+.||..|..+......... .+..||..++.-.+.++...+-.+..|..
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~ 113 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFENAE 113 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccch
Confidence 467788999999999999999777655443332 33456666655555555555444444433
No 139
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=70.95 E-value=47 Score=26.68 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 15 AKERKKLYIYMLEHKMHNLRSNSTTL 40 (202)
Q Consensus 15 SReRKkqYI~ELE~kVq~LQ~ENa~L 40 (202)
-|.++..++..++..+........+|
T Consensus 111 ~R~~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 111 DRADALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555544444444444
No 140
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=70.74 E-value=31 Score=27.88 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046677 40 LTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHM 89 (202)
Q Consensus 40 LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrL 89 (202)
|..+-+.++++...=..|-.+||.||..||.+..-.+.+++.|..-|.-|
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkML 58 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKML 58 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888888999999999999999998888888776655433
No 141
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=70.57 E-value=77 Score=32.94 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
-+..++.....+......|...+...+.++..|.+++..|+.+|..-....-=+.+..+.+.+|..++..-+
T Consensus 309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei 380 (775)
T PF10174_consen 309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEI 380 (775)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555666666667777888888888888887766655555555566655555544433
No 142
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.48 E-value=21 Score=24.20 Aligned_cols=15 Identities=40% Similarity=0.769 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHh
Q 046677 79 NDQIRSEIQHMKTVL 93 (202)
Q Consensus 79 nE~Lk~EvqrLK~~~ 93 (202)
|+.|++||..|+..+
T Consensus 28 ~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 28 NEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHhh
Confidence 455555555555443
No 143
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=69.97 E-value=38 Score=24.32 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETE 50 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~ 50 (202)
|++|...|+.|......|+..+..+.-+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444444433
No 144
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=69.87 E-value=1.1e+02 Score=30.36 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI---RSEIQHMKTV 92 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L---k~EvqrLK~~ 92 (202)
.+.+..++..|..+...+..+..++.....++..+..+-..|+.+.+.++....+.+++.+.. .+|+..|...
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~~L~~~ 119 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEEEDALTSG 119 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCC
Confidence 356788889999999999999999999999999999999999999999999999998887776 6777666543
No 145
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=69.59 E-value=23 Score=31.76 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH----hhHHHHHHHHHHH
Q 046677 29 KMHNLRSNSTTLTAQLTLLETESN----SLDAEKAVLKHRL 65 (202)
Q Consensus 29 kVq~LQ~ENa~LsaqltlLq~~~~----~L~sEN~eLK~RL 65 (202)
.+..|..||..|+.++..+..+.. .+..||..||.-|
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677888888887766633332 3677777777633
No 146
>PRK03918 chromosome segregation protein; Provisional
Probab=69.59 E-value=1e+02 Score=30.90 Aligned_cols=8 Identities=13% Similarity=-0.301 Sum_probs=4.0
Q ss_pred hhhHHHHH
Q 046677 163 ECSQLQQQ 170 (202)
Q Consensus 163 ~~~~~~~~ 170 (202)
.+|.=+++
T Consensus 788 ~lS~G~~~ 795 (880)
T PRK03918 788 FLSGGERI 795 (880)
T ss_pred hCCHhHHH
Confidence 34555555
No 147
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.97 E-value=59 Score=29.72 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 16 KERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 16 ReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
...+-.-+.+++..+..++++...|-.++..+..+...+..++.+++..+..++.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e 88 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE 88 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888888888888887777777777777777777777766666443
No 148
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=68.92 E-value=57 Score=32.54 Aligned_cols=64 Identities=28% Similarity=0.413 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHH----------------HHHHHHHHHH---HHHHH
Q 046677 27 EHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKI----------------HLQDSLNDQI---RSEIQ 87 (202)
Q Consensus 27 E~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~----------------~LkdaLnE~L---k~Evq 87 (202)
+.|+.....|+..|..++...+++...+..|..+++.++..++.+. +|. .+||.| ++||+
T Consensus 433 dSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLa-smNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 433 DSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLA-SMNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4455555667777778888888888888888888887777766543 222 567777 78888
Q ss_pred HHHH
Q 046677 88 HMKT 91 (202)
Q Consensus 88 rLK~ 91 (202)
.||.
T Consensus 512 ~LK~ 515 (518)
T PF10212_consen 512 TLKL 515 (518)
T ss_pred HHhh
Confidence 8884
No 149
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=68.63 E-value=17 Score=33.73 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHH
Q 046677 41 TAQLTLLETESNSLDAEKAVLKHRLEITLQKI 72 (202)
Q Consensus 41 saqltlLq~~~~~L~sEN~eLK~RLqsLeqq~ 72 (202)
+++-..+.-++.+|+.+|.+||.+++.||.+.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI 278 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREI 278 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888999999999999998887543
No 150
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=68.59 E-value=26 Score=27.26 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 17 ERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLET 49 (202)
Q Consensus 17 eRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~ 49 (202)
....+.+.+++.++..|+.+|..|..++..|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334445555555555555555555555555443
No 151
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=68.50 E-value=68 Score=30.04 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHR 64 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~R 64 (202)
.+|..++..|+.+|..|+.++......+..|..+|+.||.-
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999999999999999999988863
No 152
>PLN02678 seryl-tRNA synthetase
Probab=68.21 E-value=1e+02 Score=29.86 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 28 HKMHNLRSNSTTLTAQLTLLET---ESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 28 ~kVq~LQ~ENa~LsaqltlLq~---~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
.++..|..+...++.+|..+.. +...|..+-++||.++..+ +...+.+.+++..+-..+|-+|..
T Consensus 47 ~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~l-------e~~~~~~~~~l~~~~~~iPNi~~~ 114 (448)
T PLN02678 47 FELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEK-------EAEVQEAKAALDAKLKTIGNLVHD 114 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCCCCc
Confidence 3344444444444444443221 1223333444444444444 444555667777766666655544
No 153
>PRK02224 chromosome segregation protein; Provisional
Probab=67.98 E-value=97 Score=31.17 Aligned_cols=8 Identities=13% Similarity=0.003 Sum_probs=4.2
Q ss_pred hhhHHHHH
Q 046677 163 ECSQLQQQ 170 (202)
Q Consensus 163 ~~~~~~~~ 170 (202)
.+|.=+++
T Consensus 781 ~lS~G~~~ 788 (880)
T PRK02224 781 QLSGGERA 788 (880)
T ss_pred hcCccHHH
Confidence 45555554
No 154
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.88 E-value=42 Score=25.31 Aligned_cols=31 Identities=16% Similarity=0.042 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
+.|.+||.++..=+.....|+..++..+...
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i 38 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVI 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777776666666666655444433
No 155
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.79 E-value=69 Score=29.29 Aligned_cols=65 Identities=9% Similarity=0.200 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
..+++.+|..|.....++..++..++.+.+.+..+-+.|+..|..++.. ++ ..++.|++. +|..+
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~--I~-~r~~~l~~r---aRAmq 111 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN--IV-ERQELLKKR---ARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHH---HHHHH
Confidence 4577888888888888888888888888888888888888888777533 33 445666544 55554
No 156
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.58 E-value=94 Score=27.94 Aligned_cols=48 Identities=25% Similarity=0.247 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
.-...|..++..++....+|..+++.+......|..+-..++.++..+
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555554444444433
No 157
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=67.55 E-value=19 Score=34.93 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046677 9 RMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRS 84 (202)
Q Consensus 9 ReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~ 84 (202)
-++|+--|+|..+--...|..+..+..|..-|++++........+|..|+-.||.-+..+|-..+.. .-|+.|+.
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~-~pNeqLk~ 300 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL-RPNEQLKG 300 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc-CccccccC
Confidence 4678888999999999999999999999999999999999999999999999998777776554433 34555543
No 158
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=67.30 E-value=20 Score=30.57 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=10.5
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 43 QLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 43 qltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
+...+..+...|..+|..|...+..+.
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444433333333
No 159
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=67.29 E-value=32 Score=23.90 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 19 KKLYIYMLEHKMHNLRSNSTTLTAQLTLL 47 (202)
Q Consensus 19 KkqYI~ELE~kVq~LQ~ENa~LsaqltlL 47 (202)
....+.+|+.++..+..++..|..++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566666666666666666655555
No 160
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=66.66 E-value=60 Score=30.38 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=13.1
Q ss_pred HHHHHhhHhhHHHHHHHHHHHH
Q 046677 45 TLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 45 tlLq~~~~~L~sEN~eLK~RLq 66 (202)
..|+...+.|.+|++.|..+|.
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555666666666666654
No 161
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=66.58 E-value=62 Score=30.19 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
+.-|.+|+.+++.+-.||..|...+.........|.+|..+|+.|-..+
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~ 288 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC 288 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888888888888888888888888888999999998876554
No 162
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=66.55 E-value=18 Score=25.90 Aligned_cols=33 Identities=9% Similarity=0.267 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLD 55 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~ 55 (202)
+..++..+.+++.||..++..+..+.+....|.
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788888888888888877776654443
No 163
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=66.50 E-value=88 Score=32.54 Aligned_cols=83 Identities=19% Similarity=0.142 Sum_probs=50.7
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHH-----HHHHHH
Q 046677 5 IVANRMSAIRAKERKKLYIYMLEH-KMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKI-----HLQDSL 78 (202)
Q Consensus 5 iLaNReSAqRSReRKkqYI~ELE~-kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~-----~LkdaL 78 (202)
+|+-+++|+.-|.|-+..+-++-+ ++..-+.-...=--..+.|+.+...|++|-++||.++.+||.+. .+++
T Consensus 129 vLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~-- 206 (861)
T KOG1899|consen 129 VLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRL-- 206 (861)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHh--
Confidence 577888898888777666544322 11111111111112237888889999999999999999998543 3333
Q ss_pred HHHHHHHHHHH
Q 046677 79 NDQIRSEIQHM 89 (202)
Q Consensus 79 nE~Lk~EvqrL 89 (202)
.|.|-.||.++
T Consensus 207 se~l~qevn~~ 217 (861)
T KOG1899|consen 207 SENLMQEVNQS 217 (861)
T ss_pred HHHHHHHHHHH
Confidence 33444555544
No 164
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=66.23 E-value=13 Score=28.37 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 19 KKLYIYMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 19 KkqYI~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
|+.+++.|..+++.++.+|..|..+|..+.
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677888888888888888888888877654
No 165
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=65.98 E-value=72 Score=26.03 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLK 62 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK 62 (202)
.+++..+..++.|...+...+..+..+...+......++
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333334444444444444443333333333333333333
No 166
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.61 E-value=87 Score=26.85 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=22.6
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH
Q 046677 5 IVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLD 55 (202)
Q Consensus 5 iLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~ 55 (202)
-+++-++-..|=..-+..+..++.++..|.-|+..|..++..+++++..|.
T Consensus 77 ~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 77 QLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433333333333344444455555555554444444444444444443
No 167
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.36 E-value=1.1e+02 Score=33.77 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046677 11 SAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMK 90 (202)
Q Consensus 11 SAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK 90 (202)
++.-+..+++.-+.+++.++.++..|..+.+..+..+...-..+...-..+++|+..+.....-...-|++|.+ +.|||
T Consensus 532 ~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~a-l~r~k 610 (1293)
T KOG0996|consen 532 ASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDA-LMRLK 610 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHH
Confidence 34556677788888888888888888888888888888888888888888888888776655555566666643 44555
Q ss_pred HHhcccCCCCccccccc
Q 046677 91 TVLGEKIPNLGALFGLS 107 (202)
Q Consensus 91 ~~~gei~~~~g~~~n~~ 107 (202)
- .|.||+--|-+.-+|
T Consensus 611 e-sG~i~Gf~GRLGDLg 626 (1293)
T KOG0996|consen 611 E-SGRIPGFYGRLGDLG 626 (1293)
T ss_pred H-cCCCCcccccccccc
Confidence 4 567777666555554
No 168
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=65.22 E-value=1.3e+02 Score=28.60 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 28 HKMHNLRSNSTTLTAQLTLLET---ESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 28 ~kVq~LQ~ENa~LsaqltlLq~---~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
.++..|+.+...++.++..+.. +...|..+-++||.++..++ ...+.+.+++..+-..+|-++..
T Consensus 42 ~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 42 TELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALE-------AELDELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCCCCc
Confidence 3344444444444444443221 12235555555555555543 34445566666666666655544
No 169
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=64.79 E-value=76 Score=27.30 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 046677 78 LNDQIRSEIQHMKTVL 93 (202)
Q Consensus 78 LnE~Lk~EvqrLK~~~ 93 (202)
-...|..||.+|...+
T Consensus 172 ~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 172 EVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566666666554
No 170
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=64.70 E-value=7.5 Score=26.33 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 32 NLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 32 ~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
.|-..|+.++.++..++.+...|..||..||.++
T Consensus 11 ~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 11 ELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -------------------HHHHHHHHHHHHHHH
T ss_pred HHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3444566677777777777777777777777654
No 171
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=64.63 E-value=12 Score=27.17 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTA 42 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~Lsa 42 (202)
..|.||+.++..|+.||+-|+.
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777777777777776654
No 172
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=64.50 E-value=92 Score=28.24 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 10 MSAIRAKERKKLYI----YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 10 eSAqRSReRKkqYI----~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
+|+----+||.-.+ ..++.++..|+.++..|..+|+.+..+...-.--|.+.+.
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ 227 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEERE 227 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 45555566665444 3567777777777777777777666666555555555443
No 173
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=63.90 E-value=81 Score=25.87 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 046677 14 RAKERKKLYIYMLEHKM--HNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 14 RSReRKkqYI~ELE~kV--q~LQ~ENa~LsaqltlLq 48 (202)
..+.+++.-++|--.-| ..|+.||..|..+|..-.
T Consensus 26 ~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn 62 (177)
T PF13870_consen 26 EEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERN 62 (177)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333322 344556666655554433
No 174
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=63.86 E-value=96 Score=26.69 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=23.7
Q ss_pred chhhHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 046677 2 CHRIVANRMSAIRAKERKK-LYIYMLEHKMHNLRSNSTTLT 41 (202)
Q Consensus 2 aKRiLaNReSAqRSReRKk-qYI~ELE~kVq~LQ~ENa~Ls 41 (202)
.+||| ||+..+.+.. .-|.||..++..|..||..|.
T Consensus 3 ~~rvl----Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 3 TQRVL----SARLHKIKELQNELAELQRKLQELRKENKTLK 39 (194)
T ss_pred hHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56776 6666666653 356677777777777776663
No 175
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=63.76 E-value=16 Score=29.90 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 32 NLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 32 ~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
....|...|+.+|..|.+.+..|..||+-||.
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34568888899999999999999999999886
No 176
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=63.56 E-value=22 Score=35.08 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQ---DSLNDQIRSEIQHMKTV 92 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lk---daLnE~Lk~EvqrLK~~ 92 (202)
.++|-.+|..|..+|.-|+.+++.+.-.|..+..||+-|+. .+.+-+++.- +.....|-++|+.|+.-
T Consensus 45 ~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~--Asv~IQaraeqeeEfisntLlkkiqal~ke 115 (552)
T KOG2129|consen 45 GESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLL--ASVEIQARAEQEEEFISNTLLKKIQALFKE 115 (552)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhh--hhhHHhhccchHHHHHHHHHHHHHHHhhcc
Confidence 36788999999999999999999999999999999999976 6665555544 44444666677666543
No 177
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=63.47 E-value=61 Score=24.31 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhHH
Q 046677 33 LRSNSTTLTAQLTLLETESNSLDA 56 (202)
Q Consensus 33 LQ~ENa~LsaqltlLq~~~~~L~s 56 (202)
|-.+..++..++..++.+...++.
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk 57 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSK 57 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333444444444444444444433
No 178
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=63.35 E-value=1e+02 Score=26.93 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 30 MHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 30 Vq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
+..+..|+..++..+..|+.+...|.+.|..|..+|..++..
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 444555555666666666666666666666666666555433
No 179
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=62.98 E-value=58 Score=33.21 Aligned_cols=51 Identities=25% Similarity=0.306 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046677 34 RSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTV 92 (202)
Q Consensus 34 Q~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~ 92 (202)
..+..+..++|..|..+.....++-.+|+..|.+- +..+.+++|+.-||..
T Consensus 309 ~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~--------sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 309 VEEREKHKAQISALEKELKAKISELEELKEKLNSR--------SDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccHHHHHHHHHHHHHh
Confidence 33444455555555555555555555555544432 7889999999999874
No 180
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=62.95 E-value=1.8e+02 Score=31.65 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 16 KERKKLYIYMLEHKM-HNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 16 ReRKkqYI~ELE~kV-q~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
..+..+-|.+++..+ +.+..+..+...++..|..+...+...++.|+..+..+-....-..--.+.++.++..|+..+.
T Consensus 374 ~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~ 453 (1074)
T KOG0250|consen 374 VDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIE 453 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555 4444444455555555555555555555555555444433332222222223444444444443
No 181
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=62.94 E-value=96 Score=28.51 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
..|+-.|...++.|+..|..+++. |.++-.+++.||..++...-.-+-....|--|+.+||.-..++-+.
T Consensus 137 ~ee~kekl~E~~~EkeeL~~elee-------le~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEE-------LEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 345555566666666666555544 4444455555555555444322222333345777777776666554
No 182
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=62.65 E-value=98 Score=26.41 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHH
Q 046677 28 HKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQD 76 (202)
Q Consensus 28 ~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lkd 76 (202)
.+...|..-|+-|..++.-....+..|..++..|+.....+..+...++
T Consensus 74 qR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 74 QRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556666666677777777777777776666655555554
No 183
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=62.60 E-value=66 Score=28.78 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
..|.+-.++....++....+=+............|+.||..||. ..+.|+.|+..||......+..
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~--------------~v~~l~~el~~~~~~~~~~~~~ 258 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRT--------------QVEQLKKELATLRRLFLQLPKP 258 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhccc
Confidence 45666666665555554444444444444444455555555544 4455566777788777766665
Q ss_pred Cc
Q 046677 100 LG 101 (202)
Q Consensus 100 ~g 101 (202)
.+
T Consensus 259 ~~ 260 (269)
T KOG3119|consen 259 GG 260 (269)
T ss_pred cC
Confidence 54
No 184
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=62.51 E-value=1e+02 Score=31.89 Aligned_cols=8 Identities=63% Similarity=0.779 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 046677 166 QLQQQLLY 173 (202)
Q Consensus 166 ~~~~~~~~ 173 (202)
.|.|||++
T Consensus 269 KL~qQL~q 276 (717)
T PF09730_consen 269 KLKQQLLQ 276 (717)
T ss_pred HHHHHHHH
Confidence 34444443
No 185
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=62.03 E-value=41 Score=24.88 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHH
Q 046677 34 RSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQ 75 (202)
Q Consensus 34 Q~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lk 75 (202)
..+...+..++..++.+...|..||..|+..++.+....++.
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe 75 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIE 75 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 345667777788888888899999999988887776665554
No 186
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=62.00 E-value=43 Score=29.52 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 35 SNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 35 ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
.||..|...|..++.+...|..||.+|+.
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999998876
No 187
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=61.66 E-value=1.1e+02 Score=26.65 Aligned_cols=11 Identities=45% Similarity=0.643 Sum_probs=5.7
Q ss_pred hhHHHHHHHHH
Q 046677 53 SLDAEKAVLKH 63 (202)
Q Consensus 53 ~L~sEN~eLK~ 63 (202)
.+..||..||.
T Consensus 97 ~l~~en~~L~~ 107 (276)
T PRK13922 97 QLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHH
Confidence 44555555554
No 188
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=61.59 E-value=31 Score=30.65 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
||.+...+..+..+|..++.....+......++.+|+...+.+ .-..+.|.+|-+.|+..+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~-------~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL-------QDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccHHHHHHHHHHHHHHHH
Confidence 4444444444444555555444445555555555555544433 344566666777776655
No 189
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=61.06 E-value=83 Score=25.06 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=30.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 7 ANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 7 aNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
..|++....-.++..=+.-|+..+..|+..++.+..++..++.+...+..++..+..
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555544444444433
No 190
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.71 E-value=79 Score=32.84 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 22 YIYMLEHKMHNLRSNSTTLTA-------QLTLLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~Lsa-------qltlLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
.|.|+..++..+..||+.|+. -|..|.+......++-..|+.||++++.
T Consensus 93 ~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~ek 148 (769)
T PF05911_consen 93 KLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEK 148 (769)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455556666666666666654 3344555556666666777777777753
No 191
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.35 E-value=62 Score=26.42 Aligned_cols=66 Identities=20% Similarity=0.336 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 046677 32 NLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNL 100 (202)
Q Consensus 32 ~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~~ 100 (202)
.|..-.+.+..+++.+ ...|.+-.++|..||+.+.....-..++.+.+++||..++..+..+.+.-
T Consensus 40 ~m~~A~~~v~kql~~v---s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv 105 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQV---SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDV 105 (126)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444455555554433 45677788888899999887777777888888999988888887665543
No 192
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=59.78 E-value=60 Score=31.19 Aligned_cols=49 Identities=29% Similarity=0.332 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 17 ERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 17 eRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
+|-+..+.-||.-|..+..||..|..++..+.+++.....|+..|-..+
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 3456677788888889999999999999999998888888877775444
No 193
>PHA03155 hypothetical protein; Provisional
Probab=59.66 E-value=13 Score=30.30 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLT 45 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~Lsaqlt 45 (202)
++||+.++..|+.||..|+.++.
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999998884
No 194
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=59.61 E-value=49 Score=31.79 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhh
Q 046677 31 HNLRSNSTTLTAQLTLLETESNSL 54 (202)
Q Consensus 31 q~LQ~ENa~LsaqltlLq~~~~~L 54 (202)
..|+.||.+|+++++.|..+...|
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444
No 195
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=59.57 E-value=16 Score=31.11 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQD 76 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lkd 76 (202)
++|+|.|.+.-=..|+-|..+| .+...|..++.-||..+..|.++..+++
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~e 51 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQE 51 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999998888888888887 3344455555555554444444444443
No 196
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=59.36 E-value=88 Score=24.77 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=10.5
Q ss_pred hhHhhHHHHHHHHHHHHHHH
Q 046677 50 ESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 50 ~~~~L~sEN~eLK~RLqsLe 69 (202)
....|..+..+++.|+..|.
T Consensus 99 qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555553
No 197
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=59.13 E-value=1e+02 Score=28.79 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHH-----HHhHHHHHHHHH--HHHHHHHHHHHHHhccc
Q 046677 41 TAQLTLLETESNSLDAEKAVLKHRLEI-----TLQKIHLQDSLN--DQIRSEIQHMKTVLGEK 96 (202)
Q Consensus 41 saqltlLq~~~~~L~sEN~eLK~RLqs-----Leqq~~LkdaLn--E~Lk~EvqrLK~~~gei 96 (202)
++++..-++....-.+|-.+||.+|.. +|.+|+-.+|.- ..-++||..||.++.-+
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETM 136 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334445555555555543 344555555431 12278999999888644
No 198
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=58.98 E-value=30 Score=23.42 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 41 TAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 41 saqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
...+..+......|..+|..|+..+..|+
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566666666666777766666554
No 199
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.90 E-value=41 Score=33.20 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCC
Q 046677 76 DSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 76 daLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
+..|.+|+.+|-+||+.+..+...
T Consensus 310 eeentelRs~~arlksl~dklaee 333 (502)
T KOG0982|consen 310 EEENTELRSLIARLKSLADKLAEE 333 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445677777777777777655543
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.62 E-value=64 Score=28.61 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
+.||..++..|+.|+.+|+.+|..+..+...+....+++-..|.
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666666666666555555555555443
No 201
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=58.29 E-value=1.2e+02 Score=30.51 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCC
Q 046677 73 HLQDSLNDQIRSEIQHMKTVLGEKIP 98 (202)
Q Consensus 73 ~LkdaLnE~Lk~EvqrLK~~~gei~~ 98 (202)
.++...-+.|++|..+|+..+..+..
T Consensus 562 ~~k~~~l~~L~~En~~L~~~l~~le~ 587 (722)
T PF05557_consen 562 QIKKSTLEALQAENEDLLARLRSLEE 587 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34556788899999999988855543
No 202
>PRK10698 phage shock protein PspA; Provisional
Probab=58.18 E-value=1.3e+02 Score=26.22 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSL 78 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaL 78 (202)
..+..|+..+.........|...+..|+.....+.+.-..|+.|..+-+-...+.+++
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~ 156 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQL 156 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888888888888888888888888877777766553
No 203
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=57.50 E-value=1e+02 Score=31.90 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhccc
Q 046677 79 NDQIRSEIQHMKTVLGEK 96 (202)
Q Consensus 79 nE~Lk~EvqrLK~~~gei 96 (202)
.|.+|-||.||.-.+..+
T Consensus 123 fE~~Khei~rl~Ee~~~l 140 (717)
T PF09730_consen 123 FEGLKHEIKRLEEEIELL 140 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555544433
No 204
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=57.47 E-value=2.3e+02 Score=29.05 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 12 AIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 12 AqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
.-++|.+=++-+..||+++...+...+.+.+++..-.
T Consensus 479 L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 479 LVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666665555555554433
No 205
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=57.32 E-value=79 Score=31.72 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 046677 33 LRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNL 100 (202)
Q Consensus 33 LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~~ 100 (202)
-+.|..+|..+++.+..+...+..+...++..+..++.+..-.++.++.+.+++...+.+..-+|+..
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e 393 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAE 393 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 34444445555555555555555555555555555555555556777788888877777766666544
No 206
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=57.28 E-value=2.4e+02 Score=30.03 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eL 61 (202)
+.+++.++..+..+...+..++..+......+......+
T Consensus 385 ~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~ 423 (1163)
T COG1196 385 LAELEAELAEIRNELEELKREIESLEERLERLSERLEDL 423 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444443333333333333333
No 207
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=57.12 E-value=70 Score=26.06 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHR 64 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~R 64 (202)
++=..|..|+.....+.+++..+......|..||..|+..
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lE 44 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLE 44 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 3445677788888888888888888888888888877663
No 208
>PHA03162 hypothetical protein; Provisional
Probab=56.94 E-value=15 Score=30.69 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 18 RKKLYIYMLEHKMHNLRSNSTTLTAQLT 45 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ~ENa~Lsaqlt 45 (202)
+|..-++||..++..|+.||..|+.+|.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455689999999999999999999983
No 209
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=56.60 E-value=1.7e+02 Score=27.48 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHH
Q 046677 9 RMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHL 74 (202)
Q Consensus 9 ReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~L 74 (202)
-++++|-..-.+..+.|+|...+.=+........+-..++.....|.+||--|++.|...-..+-.
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777778888888888877777777777788888888888888888888876654444433
No 210
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=56.60 E-value=1.6e+02 Score=27.08 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIH 73 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~ 73 (202)
.-+.+||.++..++.....|..+++.|......|..+-..||.|...++-..-
T Consensus 156 ~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 156 KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 34555566666666666666666666666666666666666777666665533
No 211
>PF14645 Chibby: Chibby family
Probab=56.33 E-value=42 Score=26.78 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=15.6
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 43 QLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 43 qltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
....+.+++..|..||+-||.+++.|
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666777777666554
No 212
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=56.12 E-value=1.2e+02 Score=27.75 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 39 TLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 39 ~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
+++.++..+...+..|..||..+|.+.+..
T Consensus 241 tfk~Emekm~Kk~kklEKE~~~~k~k~e~~ 270 (309)
T PF09728_consen 241 TFKKEMEKMSKKIKKLEKENQTWKSKWEKS 270 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555444
No 213
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=56.12 E-value=1.6e+02 Score=33.93 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
.-+.+|-..+...+.-...+.+++...++....|.+|.-+|+..+++++...+..+.-.+.+.++|..+....
T Consensus 1639 ~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~ 1711 (1930)
T KOG0161|consen 1639 AQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQN 1711 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 3455566666666666777777777778888888888888888888888888877777777777776666543
No 214
>PRK14127 cell division protein GpsB; Provisional
Probab=55.81 E-value=93 Score=24.83 Aligned_cols=30 Identities=7% Similarity=0.137 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
|+++.-..+..|..|+..|..++..|....
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l 60 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQV 60 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444555555554444444443333
No 215
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=55.69 E-value=96 Score=24.08 Aligned_cols=44 Identities=25% Similarity=0.266 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 046677 18 RKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eL 61 (202)
=|+-|-.--|.+|..|+.++..+..++..|......-..|-.+|
T Consensus 39 LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 39 LKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888888888888888888888877776666665554
No 216
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=55.37 E-value=1.5e+02 Score=26.36 Aligned_cols=8 Identities=13% Similarity=0.297 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 046677 83 RSEIQHMK 90 (202)
Q Consensus 83 k~EvqrLK 90 (202)
..|..||.
T Consensus 192 ~~EydrLl 199 (216)
T KOG1962|consen 192 QDEYDRLL 199 (216)
T ss_pred ccHHHHHH
Confidence 33444443
No 217
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.36 E-value=1.5e+02 Score=32.38 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
.||+.+++.+...+..-+.....-..++..|..|-.+|...+...+++..-...-.+.|+.|+..|+..+
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555444444444444455554444433
No 218
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=55.15 E-value=1.3e+02 Score=27.84 Aligned_cols=70 Identities=21% Similarity=0.339 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHhhHHHHHHH----HHHHHHHHhHHHHHHHHHHHH---HHH
Q 046677 20 KLYIYMLEHKMHN-------LRSNSTTLTAQLTLLETESNSLDAEKAVL----KHRLEITLQKIHLQDSLNDQI---RSE 85 (202)
Q Consensus 20 kqYI~ELE~kVq~-------LQ~ENa~LsaqltlLq~~~~~L~sEN~eL----K~RLqsLeqq~~LkdaLnE~L---k~E 85 (202)
+.-+.|+|.|... |-+|.+.|.=+|.+|......|......+ +.++..++...+..+.+...+ +++
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667766554 33344444555555555555544444333 344556666666666554433 555
Q ss_pred HHHH
Q 046677 86 IQHM 89 (202)
Q Consensus 86 vqrL 89 (202)
|...
T Consensus 163 L~~r 166 (302)
T PF09738_consen 163 LKQR 166 (302)
T ss_pred HHHH
Confidence 5433
No 219
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.87 E-value=66 Score=31.76 Aligned_cols=51 Identities=12% Similarity=0.222 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 34 RSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 34 Q~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
+....+|..+++.++.+...+...+..+..+|+. .+..++.|++.+..++.
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIke-------LEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEK-------LGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-------HHHHHHHHHHHHHhhhc
Confidence 3344444444444444444444444444444443 35666667666655444
No 220
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=54.82 E-value=1.7e+02 Score=27.48 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=19.6
Q ss_pred hHhhHHHHHHHHHHHHHHHhHHHHH
Q 046677 51 SNSLDAEKAVLKHRLEITLQKIHLQ 75 (202)
Q Consensus 51 ~~~L~sEN~eLK~RLqsLeqq~~Lk 75 (202)
.++|-+||+-|+.||..++.+.-+.
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~ 215 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELL 215 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999998886555443
No 221
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=54.56 E-value=83 Score=31.54 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=16.0
Q ss_pred HhhHhhHHHHHHHHHHHHHHH
Q 046677 49 TESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 49 ~~~~~L~sEN~eLK~RLqsLe 69 (202)
.....|..||..|+.++..++
T Consensus 566 ~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 445678889999999996554
No 222
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=54.38 E-value=1.8e+02 Score=26.81 Aligned_cols=9 Identities=44% Similarity=0.678 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 046677 85 EIQHMKTVL 93 (202)
Q Consensus 85 EvqrLK~~~ 93 (202)
||.+||..+
T Consensus 272 Ei~~Lk~~~ 280 (312)
T smart00787 272 EIEKLKEQL 280 (312)
T ss_pred HHHHHHHHH
Confidence 444444333
No 223
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.27 E-value=2.1e+02 Score=29.07 Aligned_cols=40 Identities=15% Similarity=0.339 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 54 LDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 54 L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
+..-+..+-..|..+..+.-.++...+.|++++.+||..+
T Consensus 285 ~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 285 MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444455555566677777777777887766
No 224
>PHA02562 46 endonuclease subunit; Provisional
Probab=54.23 E-value=1.6e+02 Score=27.71 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
...+.+++.++........++..+...++.+...|..++.++-.+|..+
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l 384 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKL 384 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433
No 225
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=54.23 E-value=1.2e+02 Score=24.59 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI 82 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L 82 (202)
+.|-.....|+...+.....++.|+.+..........-...|..|+..++......+..
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666777778888888888888888888888888877555444444
No 226
>COG5293 Predicted ATPase [General function prediction only]
Probab=53.65 E-value=2.5e+02 Score=28.32 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=59.1
Q ss_pred hhhHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHH
Q 046677 3 HRIVANRMSAIRAKERKKL-YIYMLEHKMHNLRSNSTTL---------TAQLTLLETESNSLDAEKAVLKHRLEITLQKI 72 (202)
Q Consensus 3 KRiLaNReSAqRSReRKkq-YI~ELE~kVq~LQ~ENa~L---------saqltlLq~~~~~L~sEN~eLK~RLqsLeqq~ 72 (202)
++|+.+|-+--.+.-.|.+ =+.+++.++..|-.+.++. -++++.|.++...+..|-++++-|++.+.+-.
T Consensus 330 r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~ 409 (591)
T COG5293 330 RAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLH 409 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 5788999888887766643 4556666666666655554 45678888999999999999999999998888
Q ss_pred HHHHHHHH
Q 046677 73 HLQDSLND 80 (202)
Q Consensus 73 ~LkdaLnE 80 (202)
.+.+.+++
T Consensus 410 ~~~~~i~~ 417 (591)
T COG5293 410 ALDQYIGT 417 (591)
T ss_pred HHHHHHHH
Confidence 87776543
No 227
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=53.61 E-value=93 Score=23.32 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHH
Q 046677 38 TTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIH 73 (202)
Q Consensus 38 a~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~ 73 (202)
+++-.=++.++.+.+.++-|+-+||..+....++.-
T Consensus 4 ~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs 39 (70)
T PF08606_consen 4 TSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELS 39 (70)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566789999999999999999999988876543
No 228
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=53.54 E-value=1e+02 Score=23.82 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046677 19 KKLYIYMLEHKMHNLRSNSTTLTAQLTLL--ETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI 82 (202)
Q Consensus 19 KkqYI~ELE~kVq~LQ~ENa~LsaqltlL--q~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L 82 (202)
|+.-++.|+.++.....-.+.+..++..+ ..+.+.|..+-.+++-++..++....-.+.+.+.|
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777 77777777777777777766665554444444433
No 229
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=53.25 E-value=23 Score=28.89 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLL 47 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlL 47 (202)
.-++||..++..|+.||..|+.++..-
T Consensus 3 ~t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 3 MTMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 457899999999999999998887543
No 230
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=53.10 E-value=19 Score=34.53 Aligned_cols=30 Identities=27% Similarity=0.235 Sum_probs=21.5
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHhHH
Q 046677 43 QLTLLETESNSLDAEKAVLKHRLEITLQKI 72 (202)
Q Consensus 43 qltlLq~~~~~L~sEN~eLK~RLqsLeqq~ 72 (202)
+...|+.+++.|..||++||.+++.+|...
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 455677778888888888888777775443
No 231
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=53.02 E-value=1e+02 Score=25.56 Aligned_cols=17 Identities=0% Similarity=0.225 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046677 75 QDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 75 kdaLnE~Lk~EvqrLK~ 91 (202)
++...++|++.+++|-.
T Consensus 173 ~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 173 KEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45666667776666543
No 232
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=52.80 E-value=61 Score=30.13 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLE-------TESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq-------~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
..+.++|..|+.|+.-|..|+++++.-. ..-+.+.+|-+.+..+|-.|+.... ..+..+=++|....|.-.
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa--~~l~~aR~~errkvraqf 294 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQA--EMLRAARTEERRKVRAQF 294 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHHHH
Confidence 3466899999999999999999984322 2223455666666666666653332 223333355665566555
Q ss_pred cccCCC
Q 046677 94 GEKIPN 99 (202)
Q Consensus 94 gei~~~ 99 (202)
-+.+..
T Consensus 295 ~dfssk 300 (311)
T PF04642_consen 295 HDFSSK 300 (311)
T ss_pred HHhHHh
Confidence 444433
No 233
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=52.42 E-value=1.3e+02 Score=24.78 Aligned_cols=72 Identities=10% Similarity=0.152 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
++.-...+......+..+..+|+.+......-...-..|+..++.......-++...+.|+.|-+.||.-++
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~ 99 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWAD 99 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhc
Confidence 344445566666777777777777777766666677778877777777777777788888888888887664
No 234
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=52.00 E-value=1.1e+02 Score=24.06 Aligned_cols=23 Identities=22% Similarity=0.357 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC
Q 046677 76 DSLNDQIRSEIQHMKTVLGEKIP 98 (202)
Q Consensus 76 daLnE~Lk~EvqrLK~~~gei~~ 98 (202)
+..|+.|+.|+.++|..+|...+
T Consensus 28 e~eN~~l~~EL~kyk~~~g~~d~ 50 (96)
T PF11365_consen 28 EDENKQLTEELNKYKSKYGDLDS 50 (96)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcc
Confidence 45677778899999998886653
No 235
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=51.86 E-value=96 Score=33.68 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETES--NSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKI 97 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~--~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~ 97 (202)
..++||+.--..|..+-.=|.+++..+.... ..+.+++=.||+++..|+-+--.-..-.+.|..|..-|-+....+-
T Consensus 264 dRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~ 342 (1195)
T KOG4643|consen 264 DRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLD 342 (1195)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666677777777666 7888889999999999988877777788899999988888775443
No 236
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=51.86 E-value=42 Score=29.99 Aligned_cols=10 Identities=20% Similarity=0.199 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 046677 77 SLNDQIRSEI 86 (202)
Q Consensus 77 aLnE~Lk~Ev 86 (202)
+-|-.|=+-|
T Consensus 121 ~DN~kLYEKi 130 (248)
T PF08172_consen 121 ADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 237
>PRK02119 hypothetical protein; Provisional
Probab=51.52 E-value=95 Score=22.79 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLET 49 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~ 49 (202)
+.++|.++..|+...+-....|..|..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~ 30 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQ 30 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777766666555554433
No 238
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=51.26 E-value=55 Score=23.11 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046677 18 RKKLYIYMLEHKMHNLR 34 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ 34 (202)
|++..|.|||.++..=.
T Consensus 1 kw~~Rl~ELe~klkaer 17 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER 17 (52)
T ss_pred CHHHHHHHHHHHHHHhH
Confidence 35667888888776544
No 239
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=51.16 E-value=1.6e+02 Score=25.23 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSL 78 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaL 78 (202)
...+..|+..+..+......|..++..|+.+...+.+.-..|+.|.....-...+..++
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~ 156 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQL 156 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777888888888888888888887777777776665555554443
No 240
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=51.13 E-value=2.2e+02 Score=26.86 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESN 52 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~ 52 (202)
+-+++|+.+.+.|+........+++.+..--.
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~ 35 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQD 35 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999888888776655544333
No 241
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=51.01 E-value=89 Score=22.36 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
.++..++..+++....+...+..++.....+..+-..+..+|..++
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777666666666666665554
No 242
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=50.70 E-value=71 Score=25.10 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 36 NSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 36 ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
....+..+++....++..|..+|..|+..+..|+..
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555566666677777777777777777777655
No 243
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=50.65 E-value=1.5e+02 Score=24.86 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
|+..+..+......|...+..+......+..+-..|+.|....
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444333
No 244
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=50.60 E-value=54 Score=23.90 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSL 54 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L 54 (202)
..+.+|+.++..++.+...|..++..+......+
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444444333
No 245
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.56 E-value=1.5e+02 Score=28.39 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046677 34 RSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEI 86 (202)
Q Consensus 34 Q~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Ev 86 (202)
+.|...+.+..+.+.+....|..--++|++-+++||++.+--..-.|.|+.-+
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444455555555555666666666777777777777666666666664433
No 246
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=50.35 E-value=22 Score=35.90 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 38 TTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 38 a~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
..|.+++..|..++..|..||..||.||..++.
T Consensus 305 ~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 305 LGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 457888999999999999999999999988865
No 247
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=50.13 E-value=1e+02 Score=24.80 Aligned_cols=13 Identities=38% Similarity=0.406 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 046677 17 ERKKLYIYMLEHK 29 (202)
Q Consensus 17 eRKkqYI~ELE~k 29 (202)
+++++||.+++..
T Consensus 77 E~~~~~i~~~~~~ 89 (139)
T PF13935_consen 77 ERAQQRIAELEQE 89 (139)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 248
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=49.91 E-value=75 Score=22.65 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
...+.+++.++..++.+|..|..++..|.
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455566666666666666655555443
No 249
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=49.83 E-value=0.72 Score=43.12 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=39.0
Q ss_pred hhhHHhhhhHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 046677 3 HRIVANRMSAIR---AKERKKLYIYMLEHKMHNLR-SNSTTLTAQLTLLETE 50 (202)
Q Consensus 3 KRiLaNReSAqR---SReRKkqYI~ELE~kVq~LQ-~ENa~LsaqltlLq~~ 50 (202)
.|...|+..|.+ +|.||+.+...|...|..|+ .++..+..+|..|+.+
T Consensus 157 ~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne 208 (395)
T KOG1414|consen 157 LRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNE 208 (395)
T ss_pred hhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccH
Confidence 466789999999 99999999999999999999 7777766655544443
No 250
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=49.50 E-value=2.3e+02 Score=26.60 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHH-------HHHHH-HHHHhHHHHHHHH--HHHHH
Q 046677 14 RAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAV-------LKHRL-EITLQKIHLQDSL--NDQIR 83 (202)
Q Consensus 14 RSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~e-------LK~RL-qsLeqq~~LkdaL--nE~Lk 83 (202)
-++.---+.++.||.....+..-...|..-|..|++.++.|..-.+. +-.|| +++|..+.|-.-| .+.|-
T Consensus 84 ~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~ll 163 (333)
T KOG1853|consen 84 DQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLL 163 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33334445566666666666666666666666666666666543221 23344 3444444444333 33455
Q ss_pred HHHHHHHHH
Q 046677 84 SEIQHMKTV 92 (202)
Q Consensus 84 ~EvqrLK~~ 92 (202)
++|+|||--
T Consensus 164 esvqRLkdE 172 (333)
T KOG1853|consen 164 ESVQRLKDE 172 (333)
T ss_pred HHHHHHHHH
Confidence 666666643
No 251
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=49.36 E-value=47 Score=27.32 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
|...|..|..|+.+...=-.+|..|.++...+...|+.|..
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444445555555555555555555555555555555543
No 252
>PRK04863 mukB cell division protein MukB; Provisional
Probab=49.11 E-value=4.3e+02 Score=29.67 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
.+|+.++.....+...+..++..+..+...+..+-..|+.++..+..........-..+...+.+|..
T Consensus 358 eELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~ 425 (1486)
T PRK04863 358 EELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER 425 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555555555555555554444433333333334444444433
No 253
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.01 E-value=1.3e+02 Score=25.49 Aligned_cols=17 Identities=24% Similarity=0.220 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046677 18 RKKLYIYMLEHKMHNLR 34 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ 34 (202)
+...-+.+|+.++..+.
T Consensus 80 ~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 80 ELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 254
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=48.93 E-value=2.1e+02 Score=26.14 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
....|..+...++.|........+.|+.-|..|--+|+.|+.
T Consensus 51 k~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lke 92 (309)
T PF09728_consen 51 KQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKE 92 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666666666666666666664
No 255
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=48.20 E-value=1.8e+02 Score=27.25 Aligned_cols=68 Identities=24% Similarity=0.357 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH---------HH-HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH---------RL-EITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~---------RL-qsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
+-+|.++..|++||.-|..++......-..-. ..++-+ .| ...+.+..|.+-=|..|..|+.+||--+
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~~ke--k~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~ 294 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKADNKE--KTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERL 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34678999999999999999887766543222 111111 12 3356667777778888999999888643
No 256
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=48.12 E-value=1.6e+02 Score=24.41 Aligned_cols=73 Identities=12% Similarity=0.247 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 16 KERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 16 ReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
|.++..++..++..+........++...-..-......+..|-.+++.++...+... +..++.++.|+.|+..
T Consensus 130 R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~---~~is~~~k~E~~rf~~ 202 (236)
T PF09325_consen 130 RDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEF---EEISENIKKELERFEK 202 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433321112333334444444444444332221 1335555666665544
No 257
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=47.87 E-value=2.6e+02 Score=27.88 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHH-------HHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 19 KKLYIYMLEHKMHNLRS----------NSTTLTAQ-------LTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 19 KkqYI~ELE~kVq~LQ~----------ENa~Lsaq-------ltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
+.+|++||+.--..|+. ||+.|... +...++++..|.+.|.+|.-||.+
T Consensus 416 RrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaa 481 (593)
T KOG4807|consen 416 RRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAA 481 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 46799888765555543 44444332 234567888899999999888753
No 258
>PRK04406 hypothetical protein; Provisional
Probab=47.79 E-value=1.1e+02 Score=22.58 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESN 52 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~ 52 (202)
+.++|.++..|+...+-....|..|..-..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~ 35 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALS 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777887777777666666655544333
No 259
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=47.61 E-value=2.5e+02 Score=26.43 Aligned_cols=61 Identities=13% Similarity=0.286 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 33 LRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 33 LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
-.++.+.|..++..|-..+..|..-+..|-..|+.-+.++...++.....++.|++|-..+
T Consensus 58 ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqel 118 (307)
T PF10481_consen 58 EKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQEL 118 (307)
T ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555566666666666666666666666666666666654444
No 260
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.53 E-value=1.8e+02 Score=30.17 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046677 20 KLYIYMLEHKMHNLRSNSTTL---TAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEK 96 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~L---saqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei 96 (202)
.+|+.+|+....++..|.+++ ...+..|+.+...|.+++..+. .+..+...-+..|+-|+.+.++-..+..+.
T Consensus 250 lqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~----~l~~~~~~LELeN~~l~tkL~rwE~~~~~~ 325 (716)
T KOG4593|consen 250 LQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLE----KLQSTLLGLELENEDLLTKLQRWERADQEM 325 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 578888888888888888855 4556778888888888777663 355555555677888888887766666553
No 261
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.09 E-value=1.1e+02 Score=22.36 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
.-|..|-.+-..|......+...|..|......+..+...|+.++...
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555555555555555555444443
No 262
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=46.93 E-value=2.5e+02 Score=30.80 Aligned_cols=54 Identities=20% Similarity=0.140 Sum_probs=30.6
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH
Q 046677 3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDA 56 (202)
Q Consensus 3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~s 56 (202)
|=.|.||.--.---+++-.-.+++-+|.-.|++++..|+.++..|+..+..+.-
T Consensus 376 kllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~q 429 (1195)
T KOG4643|consen 376 KLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQ 429 (1195)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHH
Confidence 334556555555555555556666666666666666666666655555544333
No 263
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.67 E-value=1.1e+02 Score=22.32 Aligned_cols=64 Identities=13% Similarity=0.207 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
|.|=+..|..|..|...|+...-.+......|.+.+.++-..+..+ ..-.+.+..++..|+..+
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l-------~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKEL-------KKKLEELEKELESLEERL 70 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 3445566777777777777766655555555555555554433333 233344456666666544
No 264
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=46.32 E-value=2.3e+02 Score=27.94 Aligned_cols=43 Identities=28% Similarity=0.275 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
.+-.+.-.+..|...+.+.+...+-+...|..||..|..+.-.
T Consensus 31 ~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 31 RLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555666666666666667777777777655433
No 265
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=45.57 E-value=1.4e+02 Score=25.65 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 41 TAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 41 saqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
..++..|+.....+...|-++..-+..|+
T Consensus 174 ~~~L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 174 GEELRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666667766666666555554
No 266
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=45.38 E-value=1.1e+02 Score=28.52 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccc-CC
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEK-IP 98 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei-~~ 98 (202)
.+|+..|+.++..++.+..+|.+++.... ......+++..++.+++ .-.+|+..|....|.. +-
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~-----------k~~~~~~~~~~~~~~~~~l 305 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLE-----------KRIEEAEELIAEYGDEIPL 305 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH-SEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHH-----------HHHHHHHHHHHhcCCcceE
Confidence 46888899999999988888888765443 22222233333333322 1124666665556654 43
Q ss_pred CCcccccccc
Q 046677 99 NLGALFGLSR 108 (202)
Q Consensus 99 ~~g~~~n~~~ 108 (202)
.++..+-++.
T Consensus 306 a~~l~~~~g~ 315 (406)
T PF02388_consen 306 AGALFIYYGD 315 (406)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEEECC
Confidence 3444444444
No 267
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=45.20 E-value=95 Score=24.41 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
..||-+..+..+.|..-|...++.+..++..|+.|-+.+|.....+
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3688888999999999999999998888888888888888755333
No 268
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.75 E-value=3.3e+02 Score=27.13 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh--------HHHHHH----------H---HHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ--------KIHLQD----------S---LND 80 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq--------q~~Lkd----------a---LnE 80 (202)
-++.|+.+++.|..||+.|+..++.|.-.+..|..+-.-+-.+|+++.. ...+.| + +-+
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELie 377 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIE 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4566778889999999999888888877777776665333333333211 111222 1 455
Q ss_pred HHHHHHHHHHHHhcccC
Q 046677 81 QIRSEIQHMKTVLGEKI 97 (202)
Q Consensus 81 ~Lk~EvqrLK~~~gei~ 97 (202)
.|.+|.++|+...+...
T Consensus 378 elrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 378 ELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 66888888887766554
No 269
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.55 E-value=3.1e+02 Score=26.77 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 10 MSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 10 eSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
...++-=.++..-|.+-..+-..|+.+..++..++..+.........++.+++.+|..++
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~ 100 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN 100 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 334444444555555555666666666667777777777777777777777777776664
No 270
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=43.66 E-value=1.3e+02 Score=25.61 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
|+=.|+.|..|..+|..|..+++.|- ....+|..+-.++..+.
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~Li----~~Ar~Ne~~~~~~~~l~ 84 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEELI----ENARENEAIFQRLHRLV 84 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 44455666666666666655554432 22234444444444443
No 271
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.47 E-value=2.4e+02 Score=25.05 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=65.5
Q ss_pred hh-hHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046677 3 HR-IVANRMSAIRAK--ERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLN 79 (202)
Q Consensus 3 KR-iLaNReSAqRSR--eRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLn 79 (202)
|| |+..|+-++|-- +=|.++-+-||.=-.........|......|..++.....-=.+++.||.++|.-+ +++.
T Consensus 22 KRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va---~ALF 98 (201)
T PF11172_consen 22 KRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVA---DALF 98 (201)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 56 777887666643 34678888899888888899999999999999999999999999999999997544 4666
Q ss_pred HHHHHHHH
Q 046677 80 DQIRSEIQ 87 (202)
Q Consensus 80 E~Lk~Evq 87 (202)
+.-..|+.
T Consensus 99 ~EWe~EL~ 106 (201)
T PF11172_consen 99 DEWEQELD 106 (201)
T ss_pred HHHHHHHH
Confidence 66566653
No 272
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=43.47 E-value=1.7e+02 Score=23.52 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
.-+.-|+..+.........|..+-..|......|..+|...-.|+.
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~ 61 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIA 61 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433333333333333333333333333333333
No 273
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=43.45 E-value=83 Score=22.68 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTL 46 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~Lsaqltl 46 (202)
++||+..|..|+.|...+.+.+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888777654
No 274
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=43.27 E-value=1.2e+02 Score=21.69 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq 48 (202)
+|.++..|++..+-.-..|..|.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln 24 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELN 24 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665555555444443
No 275
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=43.23 E-value=1.5e+02 Score=30.90 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 15 AKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 15 SReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
|-+-|+.|++ ++.+|..|++|.-... ...+++...|+-||++|| ++-
T Consensus 221 s~E~~K~~vs-~~e~i~~LQeE~l~tQ---~kYQreLErlEKENkeLr-~ll 267 (980)
T KOG0447|consen 221 SYEQQKRKVS-DKEKIDQLQEELLHTQ---LKYQRILERLEKENKELR-KLV 267 (980)
T ss_pred CHHHHhhhhh-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHH-HHH
Confidence 4456666765 5778999998754332 346888899999999999 553
No 276
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=42.73 E-value=26 Score=23.66 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=12.7
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQL 44 (202)
Q Consensus 4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~Lsaql 44 (202)
++..|++=|...-... .-|.+||.++..|..||-.|+..+
T Consensus 5 ~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 5 YSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3444555554444333 347889999999999998888765
No 277
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.72 E-value=2.2e+02 Score=24.59 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAE 57 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sE 57 (202)
+..|+.++..|+..|..+...++..+.+...|..+
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333333333333333
No 278
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=42.57 E-value=2.8e+02 Score=27.45 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESN 52 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~ 52 (202)
.+|+.++..++.+...+..++..+.++..
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~ 452 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLE 452 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 279
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.27 E-value=1.3e+02 Score=24.48 Aligned_cols=12 Identities=0% Similarity=0.551 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 046677 80 DQIRSEIQHMKT 91 (202)
Q Consensus 80 E~Lk~EvqrLK~ 91 (202)
+.+.+++..|+.
T Consensus 94 ~~l~e~l~eLq~ 105 (119)
T COG1382 94 EKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 280
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=42.20 E-value=89 Score=26.13 Aligned_cols=64 Identities=19% Similarity=0.336 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
|.-|..+-.+|.+-....+=++..+++. +.|+.+|.+|...++.|. ..|+.+..|++.+|..+.
T Consensus 49 VvrlKQrRRTLKNRGYA~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~-------~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 49 VVRLKQRRRTLKNRGYAQSCRVKRVQQK-HELEKEKAELQQQVEKLK-------EENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4444555556666665555555555543 467777777777666552 445555566666665553
No 281
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.14 E-value=3e+02 Score=30.11 Aligned_cols=87 Identities=14% Similarity=0.248 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------hhHHHHHHHHHHHHHHHhHH------
Q 046677 9 RMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESN----------SLDAEKAVLKHRLEITLQKI------ 72 (202)
Q Consensus 9 ReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~----------~L~sEN~eLK~RLqsLeqq~------ 72 (202)
++.+.+-=++|..-+.||++.-..|..+...+...|..|++..+ .|+.-|-+|-.|+..||.+.
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 44555556677777777776666666666666555555554432 34444444444444444333
Q ss_pred -HHHHHHHH-------HHHHHHHHHHHHhcc
Q 046677 73 -HLQDSLND-------QIRSEIQHMKTVLGE 95 (202)
Q Consensus 73 -~LkdaLnE-------~Lk~EvqrLK~~~ge 95 (202)
.+.|-|.| -|++||+-++...-+
T Consensus 478 ee~~EQL~Esn~ele~DLreEld~~~g~~ke 508 (1243)
T KOG0971|consen 478 EEMNEQLQESNRELELDLREELDMAKGARKE 508 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 23332222 246777766555433
No 282
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=41.94 E-value=2.3e+02 Score=24.47 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 046677 26 LEHKMHNLRSNST 38 (202)
Q Consensus 26 LE~kVq~LQ~ENa 38 (202)
+|.+|..|+.+..
T Consensus 139 ~E~ki~eLE~el~ 151 (237)
T PF00261_consen 139 AESKIKELEEELK 151 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHH
Confidence 3333333333333
No 283
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.82 E-value=1.1e+02 Score=22.97 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHH
Q 046677 41 TAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 41 saqltlLq~~~~~L~sEN~eLK~ 63 (202)
..++..|.+.-..|..+|+.|+.
T Consensus 74 ~~~i~~l~~ke~~l~~en~~L~~ 96 (100)
T PF01486_consen 74 MEQIEELKKKERELEEENNQLRQ 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 284
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=41.78 E-value=1.7e+02 Score=25.29 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=34.1
Q ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 44 LTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 44 ltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
+..+..-+.++..||..|+..|.-+-+...--++..+.|...-..|+.
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777888888888888877766666666777777666555553
No 285
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.60 E-value=2.4e+02 Score=25.72 Aligned_cols=25 Identities=8% Similarity=0.302 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhcccCCC-Cccc
Q 046677 79 NDQIRSEIQHMKTVLGEKIPN-LGAL 103 (202)
Q Consensus 79 nE~Lk~EvqrLK~~~gei~~~-~g~~ 103 (202)
..++..+++-||..+|..|-. +|.+
T Consensus 91 ~~~ie~~l~~l~~~aG~v~V~G~Gl~ 116 (247)
T COG3879 91 DAALEDRLEKLRMLAGSVPVTGPGLV 116 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCcCCcEE
Confidence 334445788899999988765 4433
No 286
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=41.50 E-value=4e+02 Score=27.15 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIH 73 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~ 73 (202)
.++-.+|..++.+......++...++++..|.++-..++.++-.+..++-
T Consensus 208 rdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Eke 257 (596)
T KOG4360|consen 208 RDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKE 257 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444555555555666666666666666666666666555544444433
No 287
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=41.37 E-value=1.8e+02 Score=27.55 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETE----SNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHM 89 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~----~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrL 89 (202)
+|..++..|+.+-..++.+|..+... ...|..+-++||.++..++.+.. .+.+.+.+.+.+|
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l 106 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALK---ALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhC
No 288
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=41.29 E-value=2.5e+02 Score=29.45 Aligned_cols=78 Identities=22% Similarity=0.248 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 18 RKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT----LQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL----eqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
-|-.+|++|..+...|....+.-+.++..+.-....|..|-.-++.....+ .....-+.+.-+.|..||..+|+.+
T Consensus 605 nk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a 684 (786)
T PF05483_consen 605 NKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTA 684 (786)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344555555555555555555545555544444444444444444333222 1112222334555666777777666
Q ss_pred cc
Q 046677 94 GE 95 (202)
Q Consensus 94 ge 95 (202)
.+
T Consensus 685 ~E 686 (786)
T PF05483_consen 685 DE 686 (786)
T ss_pred HH
Confidence 43
No 289
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=41.26 E-value=2.8e+02 Score=30.06 Aligned_cols=71 Identities=13% Similarity=0.206 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHhccc
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQD----SLNDQIRSEIQHMKTVLGEK 96 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lkd----aLnE~Lk~EvqrLK~~~gei 96 (202)
+-+-|..|+.....+..+|..|+..+..+.+|...|..-+++++.+.+-.+ .++..|.++++.|-..+.+|
T Consensus 90 yRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eI 164 (1265)
T KOG0976|consen 90 YRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDI 164 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Confidence 334455555666666666677777777777776666665555543333222 23444555555555544444
No 290
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=41.19 E-value=4.6e+02 Score=28.67 Aligned_cols=79 Identities=13% Similarity=0.233 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046677 16 KERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDA----------EKAVLKHRLEITLQKIHLQDSLNDQIRSE 85 (202)
Q Consensus 16 ReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~s----------EN~eLK~RLqsLeqq~~LkdaLnE~Lk~E 85 (202)
|.+=+.-|++++.++..|......+...+.....+.+.|.+ .+..|..++...+.+.-..++.-+.+++|
T Consensus 684 ~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e 763 (1074)
T KOG0250|consen 684 RREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEE 763 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555554444444444444433 23344444444444444444445555555
Q ss_pred HHHHHHHhc
Q 046677 86 IQHMKTVLG 94 (202)
Q Consensus 86 vqrLK~~~g 94 (202)
+.++.....
T Consensus 764 ~e~~~~e~~ 772 (1074)
T KOG0250|consen 764 LEHIELEAQ 772 (1074)
T ss_pred HHHHHHHHH
Confidence 555554443
No 291
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=40.84 E-value=2.6e+02 Score=24.79 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHhcccCCC
Q 046677 38 TTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSL-------NDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 38 a~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaL-------nE~Lk~EvqrLK~~~gei~~~ 99 (202)
.++..++..|..+....+.|-+.+.+.+..||....-.+.. ...+.+|+..||..+.++--.
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666665554333211111 122345666666666555433
No 292
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=40.79 E-value=1.9e+02 Score=23.21 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESN 52 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~ 52 (202)
++.++..++..|+......+.++..+.+...
T Consensus 52 ~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~ 82 (141)
T PF13874_consen 52 RLKEINDKLEELQKHDLETSARLEEARRRHQ 82 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555544444443
No 293
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=40.77 E-value=2e+02 Score=23.37 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHhhHHHHHHHHHHH-HH--HHhHHHHH--HHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQL-------TLLETESNSLDAEKAVLKHRL-EI--TLQKIHLQ--DSLNDQIRSEIQH 88 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~Lsaql-------tlLq~~~~~L~sEN~eLK~RL-qs--Leqq~~Lk--daLnE~Lk~Evqr 88 (202)
.+...|+.....+..++..|.... ..+......|...+..|+... .. -++...|. .-+-+.+.+--.|
T Consensus 27 ~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~r 106 (136)
T PF04871_consen 27 QAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKER 106 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 445566666666666666666533 334444444555555544221 11 12222221 1123444566678
Q ss_pred HHHHhcccCCCC
Q 046677 89 MKTVLGEKIPNL 100 (202)
Q Consensus 89 LK~~~gei~~~~ 100 (202)
||.+-..+++.-
T Consensus 107 Lk~LG~eVSddE 118 (136)
T PF04871_consen 107 LKELGEEVSDDE 118 (136)
T ss_pred HHHcCCCccCCc
Confidence 888777665543
No 294
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.41 E-value=3.4e+02 Score=29.81 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=8.3
Q ss_pred ccccCCCCCCc
Q 046677 110 SSYQDMNAPIG 120 (202)
Q Consensus 110 ~~~~~~~~~~g 120 (202)
+.|++|.+-|+
T Consensus 507 f~Y~dP~~nfd 517 (1174)
T KOG0933|consen 507 FTYQDPEPNFD 517 (1174)
T ss_pred cccCCCCccch
Confidence 67889877663
No 295
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.22 E-value=1.7e+02 Score=31.31 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
++.|-..+..|+.|+..|.+++......+..|..++.-||.++.
T Consensus 673 ~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 673 IENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455556666666666666666666666666666666666665
No 296
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.86 E-value=2.5e+02 Score=29.05 Aligned_cols=66 Identities=30% Similarity=0.356 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH-------hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETESN-------SLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIP 98 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~~~-------~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~ 98 (202)
.|..|..|+.|+..|+.+++....+.. .|-.|...|+.+++.| ++..+.++.|++.++.++|+.-.
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEl-------eaeyd~~R~Eldqtkeal~q~~s 78 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEEL-------EAEYDLARTELDQTKEALGQYRS 78 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888777766555442 3445666777777666 58889999999999999886543
No 297
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=39.69 E-value=2.7e+02 Score=24.63 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 29 KMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 29 kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
....|-.++..|.+++..|+..+..+.+|-++|-.-|
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L 116 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL 116 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666777777777777777777777777775433
No 298
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=39.55 E-value=2.2e+02 Score=23.48 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 11 SAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 11 SAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
+..|-|+=--.-+.+|+.||..|.+|..-=..++..+-..+..|...++.|+.-+..+|
T Consensus 4 ~l~kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE 62 (120)
T PF10482_consen 4 LLNKLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLE 62 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 34444444455677888888888888777777788888888888888888888777665
No 299
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=39.40 E-value=2.6e+02 Score=28.99 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 12 AIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 12 AqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
+.++..-=+..++..+.++..++...+.+..++......+..|..|+..|+..+..+....... .--+.|.+|+...|.
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~-s~d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGA-SADEVLAEELKEYKE 642 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-cccHHHHHHHHHHHh
Confidence 3444444445555666666666666666666666666666666666666666665554333311 123556667666666
Q ss_pred Hh
Q 046677 92 VL 93 (202)
Q Consensus 92 ~~ 93 (202)
.+
T Consensus 643 ~L 644 (698)
T KOG0978|consen 643 LL 644 (698)
T ss_pred ce
Confidence 55
No 300
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=39.37 E-value=1.9e+02 Score=30.05 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 28 HKMHNLRSNSTTLTAQLT-------LLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 28 ~kVq~LQ~ENa~Lsaqlt-------lLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
++|..|-.||+.|-..-. .|=.+.+.|..||.+|+-.+.+..+...--+--+..|.+|+.++|..+
T Consensus 301 rEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556566665533221 222344566666666666665543332222233444555655555543
No 301
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=39.20 E-value=1.4e+02 Score=21.37 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 046677 28 HKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLK 62 (202)
Q Consensus 28 ~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK 62 (202)
.||..|.++...|..++..|..+...|..+-...|
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777766666666555444333
No 302
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.96 E-value=3.7e+02 Score=29.85 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=9.2
Q ss_pred HHHHH-HHHHHHHHHhccc
Q 046677 79 NDQIR-SEIQHMKTVLGEK 96 (202)
Q Consensus 79 nE~Lk-~EvqrLK~~~gei 96 (202)
.++.+ ++|..|+..+..+
T Consensus 879 e~~~Kk~~i~~lq~~i~~i 897 (1293)
T KOG0996|consen 879 EKAAKKARIKELQNKIDEI 897 (1293)
T ss_pred HhhhHHHHHHHHHHHHHHh
Confidence 33344 5666666655433
No 303
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=38.83 E-value=2.4e+02 Score=26.77 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNS 53 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~ 53 (202)
|.+|..+...+..+...|..+...+.++...
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555544444444433
No 304
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=38.73 E-value=3.2e+02 Score=27.64 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDS 77 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lkda 77 (202)
+..+.||+...-.|-++|..|...+..-+.-...|...-.+|...+..+.....+++.
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~q 223 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQ 223 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 6788999999999999999998888877777777777777777777777766666653
No 305
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=38.56 E-value=1.4e+02 Score=29.68 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHH---------HHHHHHHHHHHHHHHhcccCCCCccc
Q 046677 37 STTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDS---------LNDQIRSEIQHMKTVLGEKIPNLGAL 103 (202)
Q Consensus 37 Na~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lkda---------LnE~Lk~EvqrLK~~~gei~~~~g~~ 103 (202)
++++=+-++.++.+.++++-||-.||..|++..++.- .+ ....|.+|+..-|.+++...+..|.+
T Consensus 66 atSIPalL~~lQdEWDavML~~F~LRqqL~ttrQELS--haLYqhDAAcrViaRL~kE~~eareaLa~~~~qa~a~ 139 (506)
T KOG0289|consen 66 ATSIPALLKTLQDEWDAVMLESFTLRQQLQTTRQELS--HALYQHDAACRVIARLTKERDEAREALAKLSPQAGAI 139 (506)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCcccccc
Confidence 4556677899999999999999999999999876532 22 34567888888888888777766544
No 306
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=38.46 E-value=3.4e+02 Score=28.25 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
.-|-..+..++..-.+++.++..+......-.+++.+++..++
T Consensus 58 e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le 100 (698)
T KOG0978|consen 58 EKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLE 100 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHH
Confidence 3333444444444444444444444555555555555555443
No 307
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=38.42 E-value=1.3e+02 Score=22.68 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLT 45 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~Lsaqlt 45 (202)
=|.++..||..|+.....+...+.
T Consensus 12 dIk~vd~KVdaLq~~V~~l~~~~~ 35 (75)
T PF05531_consen 12 DIKAVDDKVDALQTQVDDLESNLP 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 466777788777777766666553
No 308
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=38.41 E-value=4.2e+02 Score=28.22 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhcc
Q 046677 83 RSEIQHMKTVLGE 95 (202)
Q Consensus 83 k~EvqrLK~~~ge 95 (202)
.+||.||+-++--
T Consensus 535 DaEi~RL~eLtR~ 547 (861)
T PF15254_consen 535 DAEIERLRELTRT 547 (861)
T ss_pred HHHHHHHHHHHHH
Confidence 5789999887753
No 309
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=38.37 E-value=1.2e+02 Score=23.09 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 046677 76 DSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 76 daLnE~Lk~EvqrLK~~~ 93 (202)
+..|+.|..=|..|-...
T Consensus 50 ~~EN~~Lq~YI~nLm~~s 67 (80)
T PF10224_consen 50 ESENEYLQQYIGNLMSSS 67 (80)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 466777766666664433
No 310
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.28 E-value=2e+02 Score=26.99 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 38 TTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 38 a~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
..|..-+......+..|..|...|++++..+
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555544444
No 311
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=38.20 E-value=3.2e+02 Score=25.02 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=6.1
Q ss_pred HHHHHHHHHHH
Q 046677 79 NDQIRSEIQHM 89 (202)
Q Consensus 79 nE~Lk~EvqrL 89 (202)
.|.|.+|++.|
T Consensus 227 yEklE~EL~~l 237 (267)
T PF10234_consen 227 YEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHH
Confidence 55566665544
No 312
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=38.11 E-value=54 Score=26.26 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=17.4
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 43 QLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 43 qltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
.+..+.+++..|..||+-||.+++.|
T Consensus 73 e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777888887777655
No 313
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=37.97 E-value=87 Score=27.36 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 11 SAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTL 46 (202)
Q Consensus 11 SAqRSReRKkqYI~ELE~kVq~LQ~ENa~Lsaqltl 46 (202)
+-+++.+..+..+.||..+|..|+++..++...+..
T Consensus 96 ~e~~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~ 131 (181)
T KOG3335|consen 96 KERKKEEKRKQEIMELRLKVEKLENAIAELTKFFSQ 131 (181)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777788888888888888766555555443
No 314
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=37.95 E-value=1.8e+02 Score=22.11 Aligned_cols=9 Identities=56% Similarity=0.508 Sum_probs=3.2
Q ss_pred hHHHHHHHH
Q 046677 54 LDAEKAVLK 62 (202)
Q Consensus 54 L~sEN~eLK 62 (202)
|.++...|+
T Consensus 86 l~~~l~~l~ 94 (126)
T PF13863_consen 86 LKAELEELK 94 (126)
T ss_pred HHHHHHHHH
Confidence 333333333
No 315
>PF15058 Speriolin_N: Speriolin N terminus
Probab=37.79 E-value=65 Score=28.50 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHR 64 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~R 64 (202)
+.|-.++..|-.||++|+..+.+ .-||-+||-=
T Consensus 8 eGlrhqierLv~ENeeLKKlVrL--------irEN~eLksa 40 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRL--------IRENHELKSA 40 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHHH
Confidence 45677888899999999998854 4567777764
No 316
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=37.69 E-value=1.4e+02 Score=22.59 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLT 41 (202)
Q Consensus 26 LE~kVq~LQ~ENa~Ls 41 (202)
|+.++..+..+...+.
T Consensus 68 Le~~~e~le~~i~~l~ 83 (105)
T cd00632 68 LKERLETIELRIKRLE 83 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 317
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=37.13 E-value=4.7e+02 Score=26.71 Aligned_cols=81 Identities=9% Similarity=0.092 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046677 9 RMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQH 88 (202)
Q Consensus 9 ReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Evqr 88 (202)
|+.+.+-|..=.+-|+.|..+|..|..+...+..+++.-+........+-...+.|--.|+--.+-.+.....|.+-..+
T Consensus 74 ~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~r 153 (632)
T PF14817_consen 74 RENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKR 153 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666778999999999999999999999988888888887777887777655555555555544444443333
Q ss_pred H
Q 046677 89 M 89 (202)
Q Consensus 89 L 89 (202)
|
T Consensus 154 l 154 (632)
T PF14817_consen 154 L 154 (632)
T ss_pred H
Confidence 3
No 318
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.00 E-value=1.6e+02 Score=31.93 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
.-+.+|..+..+...-..+-..++.|+.+.+.|.++|.+||.|+.+
T Consensus 1006 ~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1006 VQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 3455777777888888888999999999999999999999998755
No 319
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=36.60 E-value=2.3e+02 Score=22.96 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=34.6
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhccc
Q 046677 23 IYMLEHKM-----HNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKI-HLQDSLNDQIRSEIQHMKTVLGEK 96 (202)
Q Consensus 23 I~ELE~kV-----q~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~-~LkdaLnE~Lk~EvqrLK~~~gei 96 (202)
+.+++.+. ..|...+..+...+..|..........-..+...+..++... .+..-....++.|..-|-+++|..
T Consensus 17 ~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dl 96 (136)
T PF04871_consen 17 ILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDL 96 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH
Confidence 44454444 566666666666666666544444333333333333332111 111111123466666676666644
No 320
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.35 E-value=92 Score=23.36 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLT 45 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~Lsaqlt 45 (202)
..-|..|..++..|..+|..|..++.
T Consensus 74 ~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 74 MEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567778888888888887777653
No 321
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.19 E-value=5.9e+02 Score=27.59 Aligned_cols=12 Identities=8% Similarity=0.335 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhc
Q 046677 83 RSEIQHMKTVLG 94 (202)
Q Consensus 83 k~EvqrLK~~~g 94 (202)
..++..++..+.
T Consensus 940 ~~~~~~~~~~~~ 951 (1311)
T TIGR00606 940 QDKVNDIKEKVK 951 (1311)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 322
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=35.83 E-value=3.1e+02 Score=24.20 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046677 18 RKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDA-------EKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMK 90 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~s-------EN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK 90 (202)
+...-+..|+.+...++.+...|..+...+......|.. +...|-.++...+........-.+.-.+|+.+|+
T Consensus 30 e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq 109 (246)
T PF00769_consen 30 ESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQ 109 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666665555555554444444444433 3333333443333333322233333455555665
Q ss_pred HHhc
Q 046677 91 TVLG 94 (202)
Q Consensus 91 ~~~g 94 (202)
..+-
T Consensus 110 ~el~ 113 (246)
T PF00769_consen 110 EELE 113 (246)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 323
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=35.81 E-value=1.7e+02 Score=24.14 Aligned_cols=88 Identities=18% Similarity=0.272 Sum_probs=65.7
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046677 4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIR 83 (202)
Q Consensus 4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk 83 (202)
+||+-.-..-|+-++.- --|++|+..+-.....++..|..+...+....-+-..++-.++..|....-+|..+++=.
T Consensus 16 ~iLaakla~ir~~e~rc---l~L~rKia~~~~~~l~~rs~i~~~~~k~~~~~~~lrs~~geveE~e~~e~~~drfy~ak~ 92 (121)
T PF12507_consen 16 QILAAKLANIRRCEQRC---LLLERKIADQNFKILALRSEIEALDAKYHSDSQQLRSCCGEVEEAEEKEEERDRFYEAKR 92 (121)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhhhHhhhccchHHHHHHHhHhhhhhhhh
Confidence 45555555555555543 347888888888888999999999999998888888888888888877777788888777
Q ss_pred HHHHHHHHHhc
Q 046677 84 SEIQHMKTVLG 94 (202)
Q Consensus 84 ~EvqrLK~~~g 94 (202)
.|.........
T Consensus 93 ~em~ef~~~~~ 103 (121)
T PF12507_consen 93 KEMKEFQPMVE 103 (121)
T ss_pred cchHHHHHHhh
Confidence 77666555443
No 324
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=35.70 E-value=1.1e+02 Score=21.63 Aligned_cols=10 Identities=30% Similarity=0.640 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 046677 79 NDQIRSEIQH 88 (202)
Q Consensus 79 nE~Lk~Evqr 88 (202)
|..|++|+++
T Consensus 38 N~~Lr~eL~~ 47 (52)
T PF12808_consen 38 NRLLRAELER 47 (52)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 325
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=35.44 E-value=1.2e+02 Score=27.63 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHh
Q 046677 17 ERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI---RSEIQHMKTVL 93 (202)
Q Consensus 17 eRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L---k~EvqrLK~~~ 93 (202)
......+.+.+.++..++.....|..+......+...|..+-.....||..- ..|.++|.+.- .+.+..|....
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA---~~Li~~L~~E~~RW~~~~~~l~~~~ 307 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA---EKLISGLSGEKERWSEQIEELEEQL 307 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCHHHHHCCHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH---HHHHhhhcchhhhHHHHHHHHHHHh
Confidence 3345666677777777777777777777777777777777777776666543 33455554443 44455454444
Q ss_pred cccCCCCcccccccccccccCC
Q 046677 94 GEKIPNLGALFGLSRKSSYQDM 115 (202)
Q Consensus 94 gei~~~~g~~~n~~~~~~~~~~ 115 (202)
..++ |.++-.+-.++|-|+
T Consensus 308 ~~l~---GD~llaaa~isY~G~ 326 (344)
T PF12777_consen 308 KNLV---GDSLLAAAFISYLGP 326 (344)
T ss_dssp HHHH---HHHHHHHHHHHCCCC
T ss_pred cccH---HHHHHHHHHHHHcCC
Confidence 4333 333333334555553
No 326
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=35.34 E-value=40 Score=23.62 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLT 41 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~Ls 41 (202)
-.+.|||.+|..|..-|..|.
T Consensus 18 vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHH
Confidence 357899999999988887773
No 327
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=35.17 E-value=1.4e+02 Score=22.07 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=17.6
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHhHHH
Q 046677 47 LETESNSLDAEKAVLKHRLEITLQKIH 73 (202)
Q Consensus 47 Lq~~~~~L~sEN~eLK~RLqsLeqq~~ 73 (202)
.+.....|..||--||.||--|+....
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344556677777777777776665544
No 328
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=34.82 E-value=4.3e+02 Score=25.97 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
.+|++-|...+.....-..++...+..+.++...+..+-.++.-+|..+-..
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~ 482 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVER 482 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5788888888888888888888888888888888888888888888776433
No 329
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=34.76 E-value=1.6e+02 Score=29.26 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 046677 37 STTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIP 98 (202)
Q Consensus 37 Na~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~ 98 (202)
...+...+..|++++..|+..+++|++|+.... .+|-+||+.+.+...
T Consensus 408 ~~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer--------------~~v~~lkql~~~~q~ 455 (514)
T KOG4370|consen 408 EEELQEILELLQRQNEELEEKVNHLNQRIAEER--------------ERVIELKQLVNLLQE 455 (514)
T ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhh
Confidence 345677888999999999999999999886653 455566666654443
No 330
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=34.67 E-value=5.6e+02 Score=26.85 Aligned_cols=67 Identities=15% Similarity=0.360 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEK 96 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei 96 (202)
++.++.++..=..|...+..++ ..+...+..+|.++..+.....-++...+.|..||++|+.-+...
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l-------~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k 355 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRL-------ETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEK 355 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5555555555545555554444 455555555566666665555666677777777777777776543
No 331
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=34.30 E-value=4e+02 Score=25.05 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKA 59 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~ 59 (202)
..|..++..|..+|..|...+..+..+...+..+..
T Consensus 140 ~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~ 175 (342)
T PF06632_consen 140 SRLQAENEHLQKENERLESEANKLLKQLEKFVNAKE 175 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444554444444444444444444333
No 332
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.21 E-value=3.8e+02 Score=27.59 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETESNSL 54 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~~~~L 54 (202)
++++|..|..+...-..++..++++...|
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 333
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.17 E-value=2e+02 Score=25.44 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
+..||+.+..-..-...|..+|..|+.+...|...+.++..+|+.+
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455555554444455667777777777777777777777766554
No 334
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=34.17 E-value=3.3e+02 Score=25.12 Aligned_cols=13 Identities=0% Similarity=0.317 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhc
Q 046677 82 IRSEIQHMKTVLG 94 (202)
Q Consensus 82 Lk~EvqrLK~~~g 94 (202)
.++++.++|...+
T Consensus 228 aK~~~~~~~~~~~ 240 (264)
T PF07246_consen 228 AKEDMIRLRNDIS 240 (264)
T ss_pred HHHHHHHHHhccc
Confidence 3556666665543
No 335
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=34.15 E-value=82 Score=25.88 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 19 KKLYIYMLEHKMHNLRSNSTTLTAQ 43 (202)
Q Consensus 19 KkqYI~ELE~kVq~LQ~ENa~Lsaq 43 (202)
-.++|.+|..+...|+.||.+|+++
T Consensus 94 sLq~i~~L~nE~n~L~eEN~~L~eE 118 (120)
T PF10482_consen 94 SLQHIFELTNEMNTLKEENKKLKEE 118 (120)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445555555555555555555544
No 336
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=34.14 E-value=13 Score=37.01 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 16 KERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 16 ReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
-.+|..=+.+|.++|..|+..|..+..++..|+.+.
T Consensus 320 YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 320 YKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888899999999999998887766666665444
No 337
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=34.12 E-value=2.3e+02 Score=24.95 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKI 72 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~ 72 (202)
..+..||.||..++.--..+...+..-++..-.+..+-+.++.||.+++..+
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~ 130 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKL 130 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHH
Confidence 3466777777777766666665555555566677777777777777776554
No 338
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=33.93 E-value=1.1e+02 Score=22.25 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTT 39 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~ 39 (202)
.|..+|+-|..|+.+-+.
T Consensus 4 qv~s~e~~i~FLq~eH~~ 21 (60)
T PF14916_consen 4 QVQSLEKSILFLQQEHAQ 21 (60)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355677777777776544
No 339
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=33.90 E-value=4.8e+02 Score=25.84 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
.-+.+||.++..+..+...+..++..++.....+..+-..++..+
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~ 253 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKF 253 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555444433
No 340
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=33.71 E-value=1.6e+02 Score=30.59 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
-+.|||.|-+.|.+|.+++..+++.+.+....-..|-..||..+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEI 137 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 34566666666666666666666666655554444444555433
No 341
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=33.66 E-value=1.6e+02 Score=28.67 Aligned_cols=58 Identities=10% Similarity=0.187 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHH------HHHHHHHHHHHhHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEK------AVLKHRLEITLQKIHLQDSLNDQ 81 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN------~eLK~RLqsLeqq~~LkdaLnE~ 81 (202)
.++..++..+..+...+..++..++.....|..-| .+|..+...+.....+.+++..+
T Consensus 171 ~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~ 234 (563)
T TIGR00634 171 LKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNA 234 (563)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 33344444444444444444444444444443322 23444444444444444444333
No 342
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=33.60 E-value=57 Score=34.56 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTA-----QLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLND 80 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~Lsa-----qltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE 80 (202)
-+||.+++.+...|+.|...++- ++..++..+..+...|..|-..++..+..-+.-++--+
T Consensus 828 ~kql~eykvey~vLq~El~~~~~~~~~~~~~~lE~~~s~~~~q~~~ll~qlq~~~~~iq~l~~~v~ 893 (948)
T KOG4436|consen 828 SKQLAEYKVEYHVLQEELTTSSHLEDLNRIAKLETTNSSLQAQNTDLLEQLQVAELTIQTLERYVE 893 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhcccccccccchhhhHhhhhhhhhhhccccchhhHHHHHhh
Confidence 37999999999999999888765 34445555555555555555444444444333333333
No 343
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=33.37 E-value=3.2e+02 Score=23.66 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHH
Q 046677 29 KMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQ 75 (202)
Q Consensus 29 kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lk 75 (202)
-...+..||..|...+..+-+++..|...+..|..+-+.+..+.-+.
T Consensus 157 ~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~ 203 (206)
T PF14988_consen 157 FTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYL 203 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777777777777777777777777766655555444433
No 344
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=33.32 E-value=84 Score=23.20 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTL 46 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~Lsaqltl 46 (202)
++.++.+...|+.|+..|..+++.
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444443
No 345
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=33.27 E-value=3.4e+02 Score=24.47 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=29.5
Q ss_pred hhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 50 ESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 50 ~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
++..+..||.+||.++..+++.. ..-+.|++|-.+||-..+..-..
T Consensus 67 ~~~~~~~en~~Lk~~l~~~~~~~----~~~~~l~~EN~~Lr~lL~~~~~~ 112 (284)
T COG1792 67 SLKDLALENEELKKELAELEQLL----EEVESLEEENKRLKELLDFKESS 112 (284)
T ss_pred HhHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCcccc
Confidence 44566677888888776665433 33456677888888877644433
No 346
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=33.00 E-value=4.7e+02 Score=25.49 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
+.....++.....+.......+..|......|..|-...|.-+..+........+.-..|..|+.+++.-+.
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Confidence 444444444444444555555556666666666666666666666666666666667777777777776664
No 347
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=32.93 E-value=3.6e+02 Score=24.03 Aligned_cols=92 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH-HHHHHHHHHHHHHhHHHHHHHHHHH
Q 046677 3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDA-EKAVLKHRLEITLQKIHLQDSLNDQ 81 (202)
Q Consensus 3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~s-EN~eLK~RLqsLeqq~~LkdaLnE~ 81 (202)
+.++.....+.+.-..-..-+.+++.++..++.+...+..++..++.+...+.. ...++..++..++.+..-.++..+.
T Consensus 185 ~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 264 (423)
T TIGR01843 185 RKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNK 264 (423)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhc
Q 046677 82 IRSEIQHMKTVLG 94 (202)
Q Consensus 82 Lk~EvqrLK~~~g 94 (202)
++.++....+.+|
T Consensus 265 ~~~~l~~~~i~AP 277 (423)
T TIGR01843 265 ARDRLQRLIIRSP 277 (423)
T ss_pred HHHHHhhcEEECC
No 348
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=32.73 E-value=2.2e+02 Score=22.37 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 41 TAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 41 saqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
...+..+..+...+..||..|+.+-..++.+
T Consensus 49 ~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~e 79 (117)
T COG2919 49 AADVLQLQRQIAAQQAELEKLSARNTALEAE 79 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666665555555433
No 349
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.43 E-value=2e+02 Score=20.98 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
.++|.++..|+...+-....|..|.
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln 28 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELN 28 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777766665555554443
No 350
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=32.34 E-value=4.3e+02 Score=26.56 Aligned_cols=73 Identities=19% Similarity=0.310 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLR---SNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQ----DSLNDQIRSEIQHMKTV 92 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ---~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lk----daLnE~Lk~EvqrLK~~ 92 (202)
++++.++-..+..|+ .+-..|..++...+.+.....+|.-.|..++. ...+|+ ++.|+..++|++.||+.
T Consensus 241 kehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~---ea~rl~elreg~e~e~~rkelE~lR~~ 317 (575)
T KOG4403|consen 241 KEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD---EAPRLSELREGVENETSRKELEQLRVA 317 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh---hhhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 445555555444444 44455666777777777777777777766654 223333 45688888999999988
Q ss_pred hcc
Q 046677 93 LGE 95 (202)
Q Consensus 93 ~ge 95 (202)
+..
T Consensus 318 L~k 320 (575)
T KOG4403|consen 318 LEK 320 (575)
T ss_pred HHH
Confidence 753
No 351
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=32.34 E-value=3.6e+02 Score=23.96 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQ 43 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~Lsaq 43 (202)
......++.+...++.....|..+
T Consensus 228 ~~~~~~le~~~~~~ee~~~~L~ek 251 (297)
T PF02841_consen 228 KEQEQMLEQQERSYEEHIKQLKEK 251 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555444
No 352
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=32.29 E-value=3.5e+02 Score=27.19 Aligned_cols=71 Identities=11% Similarity=0.062 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKI 97 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~ 97 (202)
++++.|=...-.+|+-+..++++....|++.+..-.-+.+.--.+.-.|+ .+|.. =.+||+||...-|++-
T Consensus 403 qk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmd------k~Lsk-KeeeverLQ~lkgelE 473 (527)
T PF15066_consen 403 QKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMD------KTLSK-KEEEVERLQQLKGELE 473 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH------HHhhh-hHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666543333222222111121 11211 1478999999888775
No 353
>PLN02939 transferase, transferring glycosyl groups
Probab=32.03 E-value=6.1e+02 Score=27.43 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=16.1
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 47 LETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 47 Lq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
|-.+...|..||..||..++.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAE 248 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555666777777777777666433
No 354
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=31.53 E-value=4.7e+02 Score=25.04 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETE 50 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~ 50 (202)
..-|.+|+.++..++.+...+..++.+|..-
T Consensus 77 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 107 (525)
T TIGR02231 77 RKQIRELEAELRDLEDRGDALKALAKFLEDI 107 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666555543
No 355
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=31.24 E-value=6.5e+02 Score=26.57 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
.+...+..+..|++....|..+|.--..-...|.-+|+.||..+.+-..+...-+.--..|..|++.++....
T Consensus 581 e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e 653 (786)
T PF05483_consen 581 EILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE 653 (786)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444455555555555556666655555556677777777776655444444444555555666665555433
No 356
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=31.22 E-value=1.2e+02 Score=22.44 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLT 45 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~Lsaqlt 45 (202)
+.||+.++.-|+.|...|.+++.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777766654
No 357
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=30.95 E-value=1.2e+02 Score=26.81 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
|..|-.--+.|+.+|.+|..-.-+|.
T Consensus 57 IR~LKe~NqkLqedNqELRdLCCFLD 82 (195)
T PF10226_consen 57 IRGLKEVNQKLQEDNQELRDLCCFLD 82 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 44455556666666666655544443
No 358
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=30.95 E-value=3.1e+02 Score=22.69 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=7.0
Q ss_pred HHHHHhhHhhHHHHH
Q 046677 45 TLLETESNSLDAEKA 59 (202)
Q Consensus 45 tlLq~~~~~L~sEN~ 59 (202)
..|+.....|..+|.
T Consensus 54 eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 54 EELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444555555
No 359
>PF14645 Chibby: Chibby family
Probab=30.91 E-value=2.3e+02 Score=22.63 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046677 29 KMHNLRSNSTTLTAQLTLL 47 (202)
Q Consensus 29 kVq~LQ~ENa~LsaqltlL 47 (202)
+.+.|+.||.-|+-++..|
T Consensus 79 ~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 79 ENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 360
>PLN02320 seryl-tRNA synthetase
Probab=30.86 E-value=5.4e+02 Score=25.55 Aligned_cols=40 Identities=18% Similarity=0.027 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 53 SLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 53 ~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
.|..+-++||.++..++ ..-..+.+|+..+-..+|-+++.
T Consensus 134 ~l~~~~k~lk~~i~~le-------~~~~~~~~~l~~~~l~iPN~~h~ 173 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLE-------EDLVKLTDELQLEAQSIPNMTHP 173 (502)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCCCCc
Confidence 44445555555555554 33334455666666666655544
No 361
>PHA03155 hypothetical protein; Provisional
Probab=30.69 E-value=64 Score=26.32 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=17.0
Q ss_pred HHHHHHhhHhhHHHHHHHHHHHH
Q 046677 44 LTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 44 ltlLq~~~~~L~sEN~eLK~RLq 66 (202)
+..|..+...|..||+.||.+|-
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666678899999998873
No 362
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=30.67 E-value=3.5e+02 Score=24.04 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 17 ERKKLYIYMLEHKMHNLRSNSTTLTAQL 44 (202)
Q Consensus 17 eRKkqYI~ELE~kVq~LQ~ENa~Lsaql 44 (202)
..|+.||++||..+..|......|..+-
T Consensus 25 ~~k~~~ie~LE~qLk~L~k~~~~lv~~r 52 (234)
T cd07665 25 EEKLQEVECEEQRLRKLHAVVETLVNHR 52 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999998888777665443
No 363
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=30.64 E-value=3.2e+02 Score=22.86 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046677 13 IRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTV 92 (202)
Q Consensus 13 qRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~ 92 (202)
..+++.=+..|.+|-..|..-+.+...+...+..+.. .|...-+.|+.+...+.....=..+.-+.|+++|+.++..
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~---~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKD---KLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 3455666778888888888888888888777765544 4455555565555444333333345566677777777655
Q ss_pred h
Q 046677 93 L 93 (202)
Q Consensus 93 ~ 93 (202)
+
T Consensus 179 I 179 (184)
T PF05791_consen 179 I 179 (184)
T ss_dssp G
T ss_pred H
Confidence 4
No 364
>PLN02678 seryl-tRNA synthetase
Probab=30.23 E-value=4.1e+02 Score=25.82 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHH
Q 046677 28 HKMHNLRSNSTTLTAQLTLLETESNSLDAEKAV 60 (202)
Q Consensus 28 ~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~e 60 (202)
.+|-.|-.+-.++..++..|..+...+..+-..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555444433
No 365
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=30.09 E-value=1.7e+02 Score=27.60 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046677 27 EHKMHNLRSNSTTLTAQ 43 (202)
Q Consensus 27 E~kVq~LQ~ENa~Lsaq 43 (202)
+.++..|+.++..+..+
T Consensus 28 ~~~~~~~~~~~~~~~~~ 44 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEE 44 (398)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444333333333
No 366
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=30.07 E-value=2.2e+02 Score=24.47 Aligned_cols=28 Identities=36% Similarity=0.461 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 41 TAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 41 saqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
..++..++..+..|..+|..|+.+...+
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~ 137 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAIT 137 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555554444333
No 367
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=29.94 E-value=7.5e+02 Score=26.85 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
++|.|.+....++.-.+++..++.+......|...|...-.++++
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~ 456 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLES 456 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666555555555555444433
No 368
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=29.79 E-value=3.5e+02 Score=25.54 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=15.3
Q ss_pred HhhHhhHHHHHHHHHHHHHHHhHHH
Q 046677 49 TESNSLDAEKAVLKHRLEITLQKIH 73 (202)
Q Consensus 49 ~~~~~L~sEN~eLK~RLqsLeqq~~ 73 (202)
.++..|..||.+||.++..|+.+..
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~ 81 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLK 81 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777766666644443
No 369
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=29.74 E-value=4.6e+02 Score=24.32 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046677 39 TLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQ 87 (202)
Q Consensus 39 ~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Evq 87 (202)
+|..+++.|+++.+...-.-.=||+++.++-++++-+..|...|-.|+.
T Consensus 55 ~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~llqel~ 103 (277)
T PF15030_consen 55 ELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHLLQELH 103 (277)
T ss_pred HHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555666666666666666555555544443
No 370
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.73 E-value=4.3e+02 Score=28.50 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 15 AKERKKLYIYMLEHKMHNLRSNSTTLTAQ 43 (202)
Q Consensus 15 SReRKkqYI~ELE~kVq~LQ~ENa~Lsaq 43 (202)
+|++-..-|.+|..+++.++..+..|..+
T Consensus 480 q~e~~isei~qlqarikE~q~kl~~l~~E 508 (1118)
T KOG1029|consen 480 QRELMISEIDQLQARIKELQEKLQKLAPE 508 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34444444444444444444444433333
No 371
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=29.67 E-value=3.3e+02 Score=28.41 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 046677 35 SNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKI 97 (202)
Q Consensus 35 ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~ 97 (202)
.-.++.+.+++.++.+...|.+|-.++..+++.+.+...-+...-++|+-||+.-.....|.-
T Consensus 86 RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 86 RILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 344566777788888888888888888888888766555555555666777765554444443
No 372
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.58 E-value=3.8e+02 Score=23.31 Aligned_cols=51 Identities=27% Similarity=0.288 Sum_probs=21.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 15 AKERKKLY-IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 15 SReRKkqY-I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
.+..++.| +.++-..+.........-...+..++.+...|..+-..|..+.
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~ 68 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKA 68 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 4444444444444333334444444444444444444443333
No 373
>PRK14160 heat shock protein GrpE; Provisional
Probab=29.58 E-value=2.3e+02 Score=24.99 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
-+.+|+.++..|..+...|..++..+...+..+.++..-+|.|...
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557777788888888888888888888888888887777776643
No 374
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=29.53 E-value=72 Score=26.02 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=18.9
Q ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 44 LTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 44 ltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
+..|..+...|..||+.||.+|..-.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34555666688999999999885543
No 375
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=29.46 E-value=6.5e+02 Score=25.99 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 046677 75 QDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 75 kdaLnE~Lk~EvqrLK~~~ 93 (202)
+|..+..|..+|++++...
T Consensus 290 kd~~i~~L~~di~~~~~S~ 308 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASL 308 (629)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555556666555544
No 376
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=29.34 E-value=1.9e+02 Score=26.74 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 046677 29 KMHNLRSNST 38 (202)
Q Consensus 29 kVq~LQ~ENa 38 (202)
++..|+..+.
T Consensus 16 ~~~~~~~~~~ 25 (389)
T PRK03992 16 QIRQLELKLR 25 (389)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 377
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.12 E-value=3.9e+02 Score=23.26 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
.+..+|..+..|..+...|..+.+....+...+...-..+..+...+.
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~ 93 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLE 93 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777766666766666666666666555555555554443
No 378
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=28.94 E-value=3.7e+02 Score=23.05 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 31 HNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 31 q~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
..|++|...|..++.+++.+-.+...-..-++.+.
T Consensus 153 ~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qr 187 (240)
T PF12795_consen 153 WLLQAELAALEAQIEMLEQELLSNNNRQELLQLQR 187 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 33444444444444444444443333333333333
No 379
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.80 E-value=6.8e+02 Score=28.17 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
..-+.+++.++..++.+...+..++..+......+..+-..+...+..+
T Consensus 375 eeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~L 423 (1486)
T PRK04863 375 DEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAL 423 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555554444444444444444444444433333
No 380
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=28.49 E-value=6.1e+02 Score=25.34 Aligned_cols=85 Identities=11% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSN-------STTLTAQLTLLETESNSLDAEKAVLKHRLEIT-LQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~E-------Na~LsaqltlLq~~~~~L~sEN~eLK~RLqsL-eqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
+.-+.+++.+|..|... .....+++..|..+.......-+.++..++.. ++-...-+++..+-++++.||+.
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHH
Confidence 44566667777777653 12233344444433333333333333333221 11112222445555788889998
Q ss_pred HhcccCCCCccccccc
Q 046677 92 VLGEKIPNLGALFGLS 107 (202)
Q Consensus 92 ~~gei~~~~g~~~n~~ 107 (202)
.++ + +.|...||+
T Consensus 270 ~~~-~--~~~~~~~~~ 282 (555)
T TIGR03545 270 KYA-I--KSGDLKNFA 282 (555)
T ss_pred HhC-C--CcccHHHHH
Confidence 887 2 334456666
No 381
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=28.27 E-value=4.1e+02 Score=23.29 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=54.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHH-HHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046677 13 IRAKERK-KLYIYMLEHKMHNLRSNS----TTLTA-QLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEI 86 (202)
Q Consensus 13 qRSReRK-kqYI~ELE~kVq~LQ~EN----a~Lsa-qltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Ev 86 (202)
.|-|+.| ++-++|+|..++.|..-. ..++. -+...+....+|..|+..-|.+|...-++.- ...+|+.-..=.
T Consensus 39 hr~r~~~VmkeW~eaE~~~~~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H~qRV-~a~Lnerkr~al 117 (193)
T PF12925_consen 39 HRERMTKVMKEWSEAEERYKELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVETHQQRV-QAMLNERKRAAL 117 (193)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3444444 567889998888886432 22222 3366788889999999999999988765544 447777655444
Q ss_pred HHHHHHhcc
Q 046677 87 QHMKTVLGE 95 (202)
Q Consensus 87 qrLK~~~ge 95 (202)
.....++..
T Consensus 118 ~~y~~al~~ 126 (193)
T PF12925_consen 118 ENYTAALQA 126 (193)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 555555543
No 382
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=27.95 E-value=3.8e+02 Score=22.76 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046677 11 SAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMK 90 (202)
Q Consensus 11 SAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK 90 (202)
.+=..|.++..++..++..+..+.....+|...-..-..+...+..|-.++..+...... --+...+..+.|+.++.
T Consensus 105 ~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~---~~e~is~~~k~El~rF~ 181 (216)
T cd07627 105 AAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKK---EFEEVSELIKSELERFE 181 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344557788888888888888888777777431100011222233333333333322221 12355666677777764
No 383
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=27.72 E-value=3.6e+02 Score=25.57 Aligned_cols=64 Identities=25% Similarity=0.267 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046677 19 KKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESN------SLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEI 86 (202)
Q Consensus 19 KkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~------~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Ev 86 (202)
+..-+.+||.++..+......+...+..|..+.. ....+.. ||..|+++.+.+. +.|-...+||
T Consensus 166 ~lPD~seLe~~~s~~sk~Lq~lqq~v~~Lask~~y~pd~~~~e~~~~-Lr~~L~tflq~~~---~F~~~Y~~EI 235 (325)
T PF06694_consen 166 PLPDVSELEKKASELSKQLQSLQQQVAELASKHPYNPDEEYVEKESQ-LRLELETFLQTAA---GFNHCYEKEI 235 (325)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHH-HHHHHHHHHHHHH---HHHHHHHhcc
Confidence 3445678888888877777777777777765542 2233333 8888888866654 7777777775
No 384
>PHA02557 22 prohead core protein; Provisional
Probab=27.68 E-value=3.9e+02 Score=24.79 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 37 STTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 37 Na~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
...|..+++..+.+...+-.+|..|+.++..+.....+.++....-....+.+..++
T Consensus 143 V~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~ 199 (271)
T PHA02557 143 VAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLA 199 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 355667777777777888888888888888877777666554333333333333333
No 385
>PHA03162 hypothetical protein; Provisional
Probab=27.66 E-value=75 Score=26.57 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=16.7
Q ss_pred HHHHHHhhHhhHHHHHHHHHHH
Q 046677 44 LTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 44 ltlLq~~~~~L~sEN~eLK~RL 65 (202)
++.|..+...|..||+.||.+|
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667889999999888
No 386
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=27.62 E-value=9.4 Score=35.79 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=32.5
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 5 IVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLT 41 (202)
Q Consensus 5 iLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~Ls 41 (202)
...||.+|-|.|.||+..+..|+.+...+..++..|.
T Consensus 290 lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 290 LERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 3479999999999999999999999998888777765
No 387
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.38 E-value=3.6e+02 Score=24.91 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
++|||..+..++.+..+....+..+.+.+..|..|-.+||.
T Consensus 121 lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 121 LEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444
No 388
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.36 E-value=2.7e+02 Score=22.41 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
..|+.++...+.....-.+.+..|+..+..+..++.+...
T Consensus 44 ~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~ 83 (160)
T PF13094_consen 44 ELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEK 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555555555555555555555555555555555444
No 389
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=27.31 E-value=1.4e+02 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
.-|-++...|+.||.-|+-+++.|-.-.
T Consensus 75 ~rlkkk~~~LeEENNlLklKievLLDML 102 (108)
T cd07429 75 LRLKKKNQQLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455577788888888888877765433
No 390
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=27.20 E-value=7.1e+02 Score=25.73 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLT 45 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~Lsaqlt 45 (202)
|++||.+-..++.+..++.....
T Consensus 522 i~~l~~~~~~~e~~~~~~~~~~~ 544 (782)
T PRK00409 522 IASLEELERELEQKAEEAEALLK 544 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 391
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=27.20 E-value=4.2e+02 Score=26.44 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHh
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQD---SLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lkd---aLnE~Lk~EvqrLK~~~ 93 (202)
..-|.+.|.+|..|-........+++.++...+....+-+.++..++.+|.+...-+ +=+..|.+|++.|-..+
T Consensus 22 i~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l 98 (701)
T PF09763_consen 22 IHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTL 98 (701)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhc
Confidence 455666777777777777777777777777777777777777777766665544333 33566677877776665
No 392
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=27.16 E-value=3.4e+02 Score=29.40 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
+++.+..|++....+..+.+.|+.-..++...-++-+.+|+.+
T Consensus 104 ~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~ 146 (1265)
T KOG0976|consen 104 HESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENL 146 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444444444444444433
No 393
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=26.99 E-value=2.8e+02 Score=20.95 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=19.3
Q ss_pred HhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046677 49 TESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMK 90 (202)
Q Consensus 49 ~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK 90 (202)
.-...+..+-..|+.+++.+ +..|+.|.++|..+|
T Consensus 73 ~l~~~~~~~~~~L~~~l~~l-------~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 73 HLAPYKKKEREQLNARLQEL-------EEENEALAEEIQEQR 107 (109)
T ss_pred HhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Confidence 33344444555555555554 366677777766654
No 394
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.94 E-value=3e+02 Score=25.04 Aligned_cols=44 Identities=30% Similarity=0.410 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH----HHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLD----AEKAVLKHRLEIT 68 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~----sEN~eLK~RLqsL 68 (202)
+|...+.+++.+..+|..++..++....... +.+++|--|++.+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l 101 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKL 101 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 4555555555555555555555555444444 3444444444444
No 395
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.84 E-value=6.6e+02 Score=25.18 Aligned_cols=15 Identities=20% Similarity=0.135 Sum_probs=5.6
Q ss_pred HHHhhHhhHHHHHHH
Q 046677 47 LETESNSLDAEKAVL 61 (202)
Q Consensus 47 Lq~~~~~L~sEN~eL 61 (202)
++.+...+..+|..|
T Consensus 394 ~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 394 CQKELKEEREENKKL 408 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 396
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=26.84 E-value=2.7e+02 Score=25.79 Aligned_cols=42 Identities=31% Similarity=0.349 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
..|+.++..++.++..|..++..+..+...+..+-..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSEL 45 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554444444444444444433
No 397
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.82 E-value=3.7e+02 Score=22.24 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 046677 57 EKAVLKHRLEIT 68 (202)
Q Consensus 57 EN~eLK~RLqsL 68 (202)
.|.+|+..+..+
T Consensus 52 d~eeLk~~i~~l 63 (155)
T PF06810_consen 52 DNEELKKQIEEL 63 (155)
T ss_pred CHHHHHHHHHHH
Confidence 444444444444
No 398
>PRK11020 hypothetical protein; Provisional
Probab=26.70 E-value=2.9e+02 Score=22.71 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhHH
Q 046677 33 LRSNSTTLTAQLTLLETESNSLDA 56 (202)
Q Consensus 33 LQ~ENa~LsaqltlLq~~~~~L~s 56 (202)
+..|...|+.+++.+.+....+..
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~ 26 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASL 26 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666666555554443
No 399
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.62 E-value=3.5e+02 Score=24.17 Aligned_cols=79 Identities=23% Similarity=0.236 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 046677 19 KKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIP 98 (202)
Q Consensus 19 KkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~ 98 (202)
|+.-++++|.+-.+|.++-.+=..+...|+ .|..+-.+++.|...|..+.-- ..|+-.|-..+.+.+.
T Consensus 47 k~eel~~~~~eEe~LKs~~q~K~~~aanL~----~lr~Ql~emee~~~~llrQLPs--------~tEmp~Ll~dv~q~Gl 114 (211)
T COG3167 47 KLEELEELEAEEEELKSTYQQKAIQAANLE----ALRAQLAEMEERFDILLRQLPS--------DTEMPNLLADVNQAGL 114 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchH----HHHHHHHHHHHHHHHHHHhCCc--------ccchhHHHHHHHHhhh
Confidence 444455555555555544444444443332 3444555555555555444433 4577777777777777
Q ss_pred CCccccccccc
Q 046677 99 NLGALFGLSRK 109 (202)
Q Consensus 99 ~~g~~~n~~~~ 109 (202)
.+|..|-.-+|
T Consensus 115 ~sgL~fd~~~p 125 (211)
T COG3167 115 SSGLTFDLFMP 125 (211)
T ss_pred ccCceeeccCC
Confidence 88877766544
No 400
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=26.30 E-value=2.7e+02 Score=20.56 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHH
Q 046677 38 TTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKI 72 (202)
Q Consensus 38 a~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~ 72 (202)
.......+.|+.....-..+|..|+.++..+..++
T Consensus 24 ~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv 58 (70)
T PF04899_consen 24 QEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQV 58 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555555555554443
No 401
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=26.24 E-value=4.7e+02 Score=23.29 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 18 RKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
.++-|..+|+..........++|...+.........-...+.+|+..+.++
T Consensus 78 ~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnsl 128 (203)
T KOG3433|consen 78 DRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSL 128 (203)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 355677788887777777777776666555555544444455555544443
No 402
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.15 E-value=5.6e+02 Score=26.11 Aligned_cols=33 Identities=6% Similarity=0.180 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 37 STTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 37 Na~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
.-+++..+..|.+.+..|...-+.+-.-..+|+
T Consensus 290 a~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk 322 (622)
T COG5185 290 AMKISQKIKTLREKWRALKSDSNKYENYVNAMK 322 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334555566666666666665544443333333
No 403
>PRK10963 hypothetical protein; Provisional
Probab=26.11 E-value=2.5e+02 Score=24.13 Aligned_cols=45 Identities=22% Similarity=0.232 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
|+=.|+.|..|+.+|..|..+++.|- ....+|..+-.++..+...
T Consensus 39 VSL~ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l~l~ 83 (223)
T PRK10963 39 VSLVEWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSR 83 (223)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777765442 2334555555555544433
No 404
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=26.00 E-value=8.3e+02 Score=26.11 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 61 LKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 61 LK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
..+|+.++|..+++..-.-++|+.|+..||-
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~ 437 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRREQKSLKK 437 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3466666666666665566666666665553
No 405
>PRK00846 hypothetical protein; Provisional
Probab=25.89 E-value=2.9e+02 Score=20.81 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLET 49 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~ 49 (202)
.+++.++..|+...+-....|..|..
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~ 34 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSE 34 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666655555544444433
No 406
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=25.69 E-value=5.8e+02 Score=27.18 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhHhhHHHHHHHHH
Q 046677 11 SAIRAKERKKLYIYMLEHKMHNLRSNSTTL---------------TAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 11 SAqRSReRKkqYI~ELE~kVq~LQ~ENa~L---------------saqltlLq~~~~~L~sEN~eLK~ 63 (202)
|=+|.=.+-.+..+|+|+++.-|+.|..+- -..+..++.....|.+|-.++..
T Consensus 46 afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~ 113 (829)
T KOG2189|consen 46 AFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNA 113 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777888999999999998887762 34445555555555555555544
No 407
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.65 E-value=5.9e+02 Score=24.72 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTL--------------LETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI 82 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~Lsaqltl--------------Lq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L 82 (202)
++|=..+...|+..|.+|..++.. |+.-...+..||.-|...|+++.+++.-++-.+..|
T Consensus 94 ~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 94 VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Confidence 344445566777777777666543 344445677889999999999888886555444444
No 408
>PF13166 AAA_13: AAA domain
Probab=25.59 E-value=6.4e+02 Score=24.67 Aligned_cols=68 Identities=13% Similarity=0.253 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHM 89 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrL 89 (202)
++.++...+..+..+...+...+..+......+..+-..++..+..++.+..-.+..-+.+.+++.++
T Consensus 404 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 404 LIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555555555555555555443332233334444444444
No 409
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.38 E-value=5.5e+02 Score=28.22 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHh
Q 046677 16 KERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI--RSEIQHMKTVL 93 (202)
Q Consensus 16 ReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L--k~EvqrLK~~~ 93 (202)
+..+..-|.+|+.++..|..+...+..++..+......|..|-..+-.......-...+..+..+.= ..++.+.+..+
T Consensus 737 ~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l 816 (1353)
T TIGR02680 737 ERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKA 816 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 410
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=25.36 E-value=3.9e+02 Score=24.89 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHhhHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHH
Q 046677 12 AIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQL-TLLETESNSLDAEKAVLKHRLE--ITLQKIHLQDSLNDQIRSEIQH 88 (202)
Q Consensus 12 AqRSReRKkqYI~ELE~kVq~LQ~ENa~Lsaql-tlLq~~~~~L~sEN~eLK~RLq--sLeqq~~LkdaLnE~Lk~Evqr 88 (202)
+.|+|+-+ +--..|...+..++.....+.... +.++.....+.+.-.++...+. .+++++.+- |...-+.+|+.|
T Consensus 146 ~~R~~EG~-~L~~~l~~~L~~ie~~v~~v~~~~P~~~~~~~~~l~~ri~~~~~~~d~~rl~qE~al~-a~K~DI~EEldR 223 (290)
T COG1561 146 EMREREGA-ALKADLLQRLDAIEELVEKVESLMPEILEWYRERLVARLNEAQDQLDEDRLEQEVALL-AQKADIAEELDR 223 (290)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH-HHHhhHHHHHHH
Confidence 44555544 223344444555554444444333 3344444555555555554443 456666655 566667889999
Q ss_pred HHHHhcccC
Q 046677 89 MKTVLGEKI 97 (202)
Q Consensus 89 LK~~~gei~ 97 (202)
|+.-+.+.-
T Consensus 224 L~sHv~~~~ 232 (290)
T COG1561 224 LKSHVKEFR 232 (290)
T ss_pred HHHHHHHHH
Confidence 988776543
No 411
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.35 E-value=7.7e+02 Score=25.49 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQ-DSLNDQIRSEIQHM 89 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lk-daLnE~Lk~EvqrL 89 (202)
..|++|+.+...++.+..++......+++....|..+-.+|+.+-..+...+.-. ...-+..++|++.+
T Consensus 515 ~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~ 584 (771)
T TIGR01069 515 VLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESI 584 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 412
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=25.26 E-value=3.1e+02 Score=21.08 Aligned_cols=52 Identities=27% Similarity=0.302 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHhhHHHHHHHHHHHHHHHhHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLT---LLETESNSLDAEKAVLKHRLEITLQKIH 73 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~Lsaqlt---lLq~~~~~L~sEN~eLK~RLqsLeqq~~ 73 (202)
-|+.||.++.........+..++. +-......|..|-+.|+.++...|.+..
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~ 60 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELK 60 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 456666666665555444444432 2224555666677777776666654444
No 413
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=25.25 E-value=2.7e+02 Score=20.23 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRS--NSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 22 YI~ELE~kVq~LQ~--ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
.+..|+..|..|-+ .+..|+.+|..+...+..|..+-+..=.++...
T Consensus 11 ~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 11 NVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp HHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777764 677778888888888877777777766666555
No 414
>PRK14011 prefoldin subunit alpha; Provisional
Probab=24.95 E-value=4e+02 Score=22.01 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLET 49 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~ 49 (202)
+++++..|+....+|...+..+..
T Consensus 93 ~~~ri~~l~~~~~~l~~~i~~~~~ 116 (144)
T PRK14011 93 FKKSVEELDKTKKEGNKKIEELNK 116 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 415
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.94 E-value=6.3e+02 Score=24.35 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=14.7
Q ss_pred HHHHHHHHH---HHHHHHHHHHhccc
Q 046677 74 LQDSLNDQI---RSEIQHMKTVLGEK 96 (202)
Q Consensus 74 LkdaLnE~L---k~EvqrLK~~~gei 96 (202)
|-+-+||.+ ..||..||..+..+
T Consensus 263 LEeqlNd~~elHq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 263 LEEQLNDLTELHQNEIYNLKQELASM 288 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334455554 78888888877533
No 416
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.82 E-value=8.8e+02 Score=26.56 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHH
Q 046677 39 TLTAQLTLLETESNSLDAEKAVLKHR 64 (202)
Q Consensus 39 ~LsaqltlLq~~~~~L~sEN~eLK~R 64 (202)
.+..++..-..+...+..|..+++..
T Consensus 487 ~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 487 KLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333433344444455555555444
No 417
>PRK12704 phosphodiesterase; Provisional
Probab=24.41 E-value=6.9e+02 Score=24.61 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred hhhHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 046677 3 HRIVANRMSAIRAK----ERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSL 78 (202)
Q Consensus 3 KRiLaNReSAqRSR----eRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaL 78 (202)
++-+..|+..-..| .+|...++..|.++...+.+......++.....+...+..+...-=.++..|..... ++.+
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea-~~~l 159 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA-KEIL 159 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHHH
Q ss_pred HHHHHHHHHH
Q 046677 79 NDQIRSEIQH 88 (202)
Q Consensus 79 nE~Lk~Evqr 88 (202)
-+.++.|+.+
T Consensus 160 ~~~~~~~~~~ 169 (520)
T PRK12704 160 LEKVEEEARH 169 (520)
T ss_pred HHHHHHHHHH
No 418
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=24.34 E-value=1.9e+02 Score=25.94 Aligned_cols=38 Identities=29% Similarity=0.244 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 18 RKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
|+..||..|+.+... ...+...|..||..|+.||..++
T Consensus 102 kA~~~i~~l~~~~~~--------------~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 102 KALEHIQSLERKSAT--------------QQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hHHHHHHHHHhHHHH--------------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666665543 44455566777888888887664
No 419
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=24.18 E-value=5.2e+02 Score=23.08 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
.+|+..+..+.+.+..|+.....+...-.....+-+.|-.+|
T Consensus 112 ~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKL 153 (205)
T KOG1003|consen 112 EELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKL 153 (205)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544444444444444443
No 420
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=24.17 E-value=4.4e+02 Score=22.31 Aligned_cols=41 Identities=15% Similarity=0.313 Sum_probs=33.8
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046677 42 AQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI 82 (202)
Q Consensus 42 aqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L 82 (202)
.-|++.++....|..+|.+|+.+++.|-..++-.|.+.+.+
T Consensus 40 ~avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~ 80 (225)
T PF04340_consen 40 GAVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRL 80 (225)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999988887777665554
No 421
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.12 E-value=6.9e+02 Score=24.50 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETE 50 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~ 50 (202)
++..+..+...|..|..++..+...
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444444444444444444433
No 422
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.12 E-value=5.2e+02 Score=23.12 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=35.6
Q ss_pred chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH--HHHHHHHH
Q 046677 2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK--IHLQDSLN 79 (202)
Q Consensus 2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq--~~LkdaLn 79 (202)
+|=.++-|..++---++|..|+.-+...-..+..|..++..++... |+.+|..++..+.+ .-++.++.
T Consensus 151 lK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a----------~~~~k~e~~Rf~~~k~~D~k~~~~ 220 (243)
T cd07666 151 LMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA----------NNALKADWERWKQNMQTDLRSAFT 220 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666766666666666666554332233333333333333322 44455555554332 23444454
Q ss_pred HHHHHHH
Q 046677 80 DQIRSEI 86 (202)
Q Consensus 80 E~Lk~Ev 86 (202)
+.++.-|
T Consensus 221 ~yae~~i 227 (243)
T cd07666 221 DMAENNI 227 (243)
T ss_pred HHHHHHH
Confidence 4444333
No 423
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=24.05 E-value=4.1e+02 Score=23.97 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=3.0
Q ss_pred CCCcccc
Q 046677 98 PNLGALF 104 (202)
Q Consensus 98 ~~~g~~~ 104 (202)
+.+|-+.
T Consensus 189 P~dG~V~ 195 (370)
T PRK11578 189 PMAGEVT 195 (370)
T ss_pred CCCcEEE
Confidence 3344443
No 424
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=24.02 E-value=6.7e+02 Score=24.31 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=31.9
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
++.|..|..|.+.-..-++-+.|+...+..+..+......++..+.
T Consensus 196 ~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 196 RQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3566677777776666667777777777777777776666666665
No 425
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=23.95 E-value=3.7e+02 Score=26.78 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 41 TAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 41 saqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
+.=|.-|+.....-++||.+|+.+++.+|
T Consensus 271 keYid~LE~rv~~~taeNqeL~kkV~~Le 299 (472)
T KOG0709|consen 271 KEYIDGLESRVSAFTAENQELQKKVEELE 299 (472)
T ss_pred hhHHHHHhhhhhhcccCcHHHHHHHHHHh
Confidence 33455556666666666666666665554
No 426
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=23.89 E-value=8.3e+02 Score=25.74 Aligned_cols=17 Identities=18% Similarity=0.598 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcccCCC
Q 046677 83 RSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 83 k~EvqrLK~~~gei~~~ 99 (202)
..-|.+||.-+|+.-+.
T Consensus 217 ~tlv~~LR~YvGeq~p~ 233 (739)
T PF07111_consen 217 VTLVEQLRKYVGEQVPP 233 (739)
T ss_pred HHHHHHHHHHHhhhCCc
Confidence 44588999999876543
No 427
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=23.75 E-value=26 Score=36.16 Aligned_cols=91 Identities=20% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046677 9 RMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQH 88 (202)
Q Consensus 9 ReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Evqr 88 (202)
.+-|++++.-=..-+..+++++..|+.+...+...+..+.+....+.+|..++..++..+....-.....-..|..+|..
T Consensus 590 lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~ 669 (859)
T PF01576_consen 590 LEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQ 669 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 44455555555556677888888888888888888888888888888888888888877654443333344445566666
Q ss_pred HHHHhcccCCC
Q 046677 89 MKTVLGEKIPN 99 (202)
Q Consensus 89 LK~~~gei~~~ 99 (202)
|...+.+.-+.
T Consensus 670 l~~eleE~~~~ 680 (859)
T PF01576_consen 670 LEEELEEEQSE 680 (859)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 66666555444
No 428
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.70 E-value=3.7e+02 Score=30.28 Aligned_cols=8 Identities=25% Similarity=0.277 Sum_probs=3.1
Q ss_pred HHHHHhHH
Q 046677 65 LEITLQKI 72 (202)
Q Consensus 65 LqsLeqq~ 72 (202)
|++|+.+.
T Consensus 1269 LesLq~~~ 1276 (1758)
T KOG0994|consen 1269 LESLQREF 1276 (1758)
T ss_pred HHHHHHHH
Confidence 34443333
No 429
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=23.51 E-value=4.3e+02 Score=25.62 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEK 96 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei 96 (202)
..=|.|||.++..+......... +..|+.....+...-..++ ....++ ..-+.+.+|+..++......
T Consensus 321 ~~Ii~ELe~Ei~~~~~~~~~~~~-l~~L~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~ 388 (448)
T PF05761_consen 321 AAIIPELEQEIEIWNSKKYRFEE-LQELEELLEELQDHLDQLR-------SSSELR-PDISELRKERRELRREMKEL 388 (448)
T ss_dssp EEE-TTHHHHHHHHHHTHHHHHH-HHHHHHHCHHHHCHHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHCT
T ss_pred EEEehhhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHHhcccc-------cchhhH-HHHHHHHHHHHHHHHHHhhh
Confidence 34478899988877765544333 5555555544444333222 222222 44556778888888877533
No 430
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=23.44 E-value=2.4e+02 Score=24.64 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 046677 79 NDQIRSEIQHMKTVLGEKI 97 (202)
Q Consensus 79 nE~Lk~EvqrLK~~~gei~ 97 (202)
+..|.+|++|+|+++.-+.
T Consensus 193 ~g~l~~El~rmR~LlarV~ 211 (213)
T PF13093_consen 193 DGELEAELERMRMLLARVA 211 (213)
T ss_pred CchHHHHHHHHHHHHHHHc
Confidence 4567889999999887554
No 431
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.44 E-value=2.1e+02 Score=26.06 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
+.+||.++..|+.+..+|+- +..++.+.
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~ 85 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQN 85 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHH
Confidence 45566666666655555554 44443333
No 432
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=23.13 E-value=1.1e+02 Score=31.84 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=28.1
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRS 35 (202)
Q Consensus 4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ 35 (202)
|+|+.=+-|.-||+.|+.|++||+-++.-++.
T Consensus 414 ~~l~ksq~~kl~k~q~k~y~de~dyr~kl~~k 445 (763)
T TIGR00993 414 KPLTKAQMAKLSKEQRKAYLEEYDYRVKLLQK 445 (763)
T ss_pred ccccHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 56777788999999999999999999987765
No 433
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=23.13 E-value=72 Score=31.54 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLT 45 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~Lsaqlt 45 (202)
-|++|++++..|+.+...|..+++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccc
Confidence 455555555555555444444433
No 434
>PLN02320 seryl-tRNA synthetase
Probab=22.93 E-value=4.4e+02 Score=26.18 Aligned_cols=26 Identities=4% Similarity=-0.027 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCcc
Q 046677 77 SLNDQIRSEIQHMKTVLGEKIPNLGA 102 (202)
Q Consensus 77 aLnE~Lk~EvqrLK~~~gei~~~~g~ 102 (202)
.+.+.+.+--..|...+-.+|+....
T Consensus 148 ~le~~~~~~~~~l~~~~l~iPN~~h~ 173 (502)
T PLN02320 148 TLEEDLVKLTDELQLEAQSIPNMTHP 173 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 33444444444556666667766643
No 435
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=22.92 E-value=2.2e+02 Score=22.89 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046677 27 EHKMHNLRSNSTTLTAQL 44 (202)
Q Consensus 27 E~kVq~LQ~ENa~Lsaql 44 (202)
+.++..|+.+...|..++
T Consensus 111 ~~~l~~L~~~i~~L~~~~ 128 (134)
T PF07047_consen 111 QERLEELEERIEELEEQV 128 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333443333333333
No 436
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.82 E-value=3.5e+02 Score=22.26 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 19 KKLYIYMLEHKMHNLRSNSTTLT-----AQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 19 KkqYI~ELE~kVq~LQ~ENa~Ls-----aqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
......+|-.++..|..|...++ ++-+.++|+.+.++.|-.+++..+.+
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777777664 55677888888888888888775444
No 437
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.82 E-value=1e+03 Score=25.92 Aligned_cols=45 Identities=22% Similarity=0.113 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
+.+|...+..+..+...+..++.-+......+.++...++.+...
T Consensus 890 L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1311)
T TIGR00606 890 LVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET 934 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444433
No 438
>PRK05255 hypothetical protein; Provisional
Probab=22.81 E-value=4.9e+02 Score=22.27 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH-HHHHHHHHhHHHHHHHHHHHH----
Q 046677 8 NRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL-KHRLEITLQKIHLQDSLNDQI---- 82 (202)
Q Consensus 8 NReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eL-K~RLqsLeqq~~LkdaLnE~L---- 82 (202)
.|-+..-+|.|-.+||..|-+.+ +...+...++.+......-......| +-|=..++.. -+++++.+
T Consensus 61 ~ri~~~eA~RRqlqyIGKLmR~~-----d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~~~---d~al~e~~~~~P 132 (171)
T PRK05255 61 QRITSHEARRRQLQYIGKLMRNE-----DVEPIRAALDKLKNKHNQETARFHKLERWRDRLLAEG---DDALTEFLEEYP 132 (171)
T ss_pred hhhccchHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHCc
Confidence 34444567889999999999986 33445555555544433332222222 1111122211 12444444
Q ss_pred HHHHHHHHHHh
Q 046677 83 RSEIQHMKTVL 93 (202)
Q Consensus 83 k~EvqrLK~~~ 93 (202)
..+++.||..+
T Consensus 133 ~~DrQ~LRqLi 143 (171)
T PRK05255 133 DADRQQLRQLI 143 (171)
T ss_pred hhhHHHHHHHH
Confidence 67888888755
No 439
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=22.67 E-value=5.6e+02 Score=23.13 Aligned_cols=16 Identities=38% Similarity=0.412 Sum_probs=10.4
Q ss_pred HhhHhhHHHHHHHHHH
Q 046677 49 TESNSLDAEKAVLKHR 64 (202)
Q Consensus 49 ~~~~~L~sEN~eLK~R 64 (202)
.+...|+.||..||.-
T Consensus 90 ~~~~~l~~EN~~Lr~l 105 (284)
T COG1792 90 EEVESLEEENKRLKEL 105 (284)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456677777777663
No 440
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=22.64 E-value=3.5e+02 Score=23.48 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=38.6
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 046677 5 IVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSL 54 (202)
Q Consensus 5 iLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L 54 (202)
|+.-|.|+..-|.+=+.|.-+||.+=..|..-.+=.+.++..|++.+..+
T Consensus 118 i~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~ 167 (187)
T PF05300_consen 118 ILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEF 167 (187)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777888888888888888888888888888888777776543
No 441
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=22.42 E-value=3.5e+02 Score=26.60 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLT 45 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~Lsaqlt 45 (202)
++.||.++..|+.+...|..++.
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~ 592 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVA 592 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777777777766663
No 442
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=22.41 E-value=3.6e+02 Score=20.56 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eL 61 (202)
+|-.++..-+.|...|..-+..|.......+.-|..|
T Consensus 9 ~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkL 45 (76)
T PF11544_consen 9 ELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKL 45 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443
No 443
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.28 E-value=1.1e+03 Score=26.15 Aligned_cols=59 Identities=24% Similarity=0.191 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 13 IRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 13 qRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
..|.+|......+|...+..+...-+.+...+..++........+-.++...|.....+
T Consensus 415 ~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~q 473 (1141)
T KOG0018|consen 415 KESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQ 473 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666555554433
No 444
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.28 E-value=2.2e+02 Score=21.08 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=6.0
Q ss_pred hhHhhHHHHHHHHHHH
Q 046677 50 ESNSLDAEKAVLKHRL 65 (202)
Q Consensus 50 ~~~~L~sEN~eLK~RL 65 (202)
+...+..+...++.++
T Consensus 85 ~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 85 ELAALQDEIQALEAQI 100 (104)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333443333
No 445
>PRK00295 hypothetical protein; Provisional
Probab=22.22 E-value=3.1e+02 Score=19.76 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq 48 (202)
+|.++..|+...+-....|..|.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln 25 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALN 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665555554444443
No 446
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=22.16 E-value=4.6e+02 Score=21.71 Aligned_cols=16 Identities=6% Similarity=0.273 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 046677 71 KIHLQDSLNDQIRSEI 86 (202)
Q Consensus 71 q~~LkdaLnE~Lk~Ev 86 (202)
+-.+.+-..++|.+|+
T Consensus 104 QPK~IEkQte~LteEL 119 (126)
T PF07028_consen 104 QPKFIEKQTEALTEEL 119 (126)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4444455555555554
No 447
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.15 E-value=3.9e+02 Score=20.91 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESN 52 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~ 52 (202)
..|++++..|......|...+..+.....
T Consensus 97 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~ 125 (140)
T PRK03947 97 EILDKRKEELEKALEKLEEALQKLASRIA 125 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 448
>PHA02109 hypothetical protein
Probab=21.90 E-value=2.6e+02 Score=24.88 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=11.2
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 46 LLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 46 lLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
.|.-....|+.|-..++.+|..+.+
T Consensus 197 ~L~~ki~~LS~E~~Q~~~Ki~N~R~ 221 (233)
T PHA02109 197 ELTIKLEALSDEACQVKHKILNLRA 221 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444455554444443
No 449
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=21.83 E-value=2.4e+02 Score=26.94 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 30 MHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 30 Vq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
|.+|++.|.+|..+|...++++..|.--|+.=-..++-|.+
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsq 42 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQ 42 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999998888888887665543333333333
No 450
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.79 E-value=3.6e+02 Score=20.42 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 30 MHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 30 Vq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
+.-|+..|...+.+...+......+...-..|+.+-..+.
T Consensus 23 ~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~ 62 (99)
T PF10046_consen 23 YNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQ 62 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555444443
No 451
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=21.79 E-value=3.6e+02 Score=20.40 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNS 37 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~EN 37 (202)
.++..|+..+..|+.-.
T Consensus 8 ~al~rL~~aid~LE~~v 24 (89)
T PF13747_consen 8 AALTRLEAAIDRLEKAV 24 (89)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566667776666543
No 452
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=21.67 E-value=1.8e+02 Score=25.46 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 31 HNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 31 q~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
..|+.+-..|+..+..|..++..|..|+.+|+..+....
T Consensus 108 kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~ 146 (198)
T KOG0483|consen 108 KQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLK 146 (198)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Confidence 345566666777777777777777777777777555443
No 453
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=21.63 E-value=4.9e+02 Score=21.85 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhH
Q 046677 33 LRSNSTTLTAQLTLLETESNSLD 55 (202)
Q Consensus 33 LQ~ENa~LsaqltlLq~~~~~L~ 55 (202)
+..+...|..+++.|+.++..|.
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333333333
No 454
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.57 E-value=9.1e+02 Score=24.98 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
++|.-+..|+.+...+..+...+......+.....+|+.+.+.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~ 559 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEK 559 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444444444444444444433
No 455
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=21.53 E-value=2e+02 Score=22.76 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 046677 17 ERKKLYIYMLEHKMHNLRSNST-TLTAQLT 45 (202)
Q Consensus 17 eRKkqYI~ELE~kVq~LQ~ENa-~Lsaqlt 45 (202)
.-|..||.+|-..|..||.++. -|.+++.
T Consensus 50 ~~K~t~L~~LR~~lt~lQddIN~fLTeRMe 79 (103)
T PF08738_consen 50 EDKDTYLSELRAQLTTLQDDINEFLTERME 79 (103)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467999999999999997765 4555544
No 456
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=21.52 E-value=4e+02 Score=25.05 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Q 046677 27 EHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLG 101 (202)
Q Consensus 27 E~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~~g 101 (202)
+.++..|+.|.+--+.....|......|..---+|-..++.|..+..+-.---+.-++||++|+.-...++--.|
T Consensus 235 ~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~ 309 (330)
T KOG2991|consen 235 EGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVG 309 (330)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 457
>smart00340 HALZ homeobox associated leucin zipper.
Probab=21.47 E-value=1.9e+02 Score=20.03 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=12.3
Q ss_pred HHHHHhhHhhHHHHHHHHH
Q 046677 45 TLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 45 tlLq~~~~~L~sEN~eLK~ 63 (202)
.+|.+=+..|+.||+-|+.
T Consensus 8 e~LKrcce~LteeNrRL~k 26 (44)
T smart00340 8 ELLKRCCESLTEENRRLQK 26 (44)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666677777766655
No 458
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.39 E-value=4.4e+02 Score=27.54 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh--------------------
Q 046677 18 RKKLYIYMLEHKMHNLRS-------NSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ-------------------- 70 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ~-------ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq-------------------- 70 (202)
++-.|+.+|......... ++.-+...+..+.++...|..||.-|+..+..-..
T Consensus 472 ~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~ 551 (716)
T KOG4593|consen 472 KLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTS 551 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchH
Confidence 444555554444333322 33334555667777777888888777744322111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 046677 71 -KIHLQDSLNDQIRSEIQHMKTVLGEKIP 98 (202)
Q Consensus 71 -q~~LkdaLnE~Lk~EvqrLK~~~gei~~ 98 (202)
--..+..--+.|.+|+++||..+..+-+
T Consensus 552 ~~~~~~k~~~e~LqaE~~~lk~~l~~le~ 580 (716)
T KOG4593|consen 552 KARQIKKNRLEELQAELERLKERLTALEG 580 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1122223567889999999986554433
No 459
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=21.34 E-value=8.9e+02 Score=28.17 Aligned_cols=68 Identities=24% Similarity=0.204 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046677 18 RKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSE 85 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~E 85 (202)
|+.+-|+.|+..+..|..++.++...+..++.......++-.-++.++..|++..-+....+..|..|
T Consensus 133 ~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~e 200 (1822)
T KOG4674|consen 133 RQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRE 200 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444555455555555555555555555555556666677777766665555555444
No 460
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.20 E-value=1.1e+03 Score=26.01 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
.-+.++|......-.+..+|...+....-....+.+++.++|.++.
T Consensus 418 ~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~d 463 (1200)
T KOG0964|consen 418 KEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELD 463 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3344444444443344444433333333333444445555554443
No 461
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.17 E-value=6.4e+02 Score=26.25 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 28 HKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 28 ~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
.+|-.|++|...+...++-.+.++..|...+..++.--+.+|
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E 148 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVE 148 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Confidence 445555555555555555555566666666665554444433
No 462
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=21.07 E-value=5.3e+02 Score=24.23 Aligned_cols=7 Identities=43% Similarity=0.719 Sum_probs=3.3
Q ss_pred CCCcccc
Q 046677 98 PNLGALF 104 (202)
Q Consensus 98 ~~~g~~~ 104 (202)
+.+|-+.
T Consensus 322 P~dG~V~ 328 (457)
T TIGR01000 322 PEDGVLH 328 (457)
T ss_pred CCCeEEE
Confidence 4455443
No 463
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=20.93 E-value=7.7e+02 Score=25.15 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046677 9 RMSAIRAKERKKLYIYML---EHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSE 85 (202)
Q Consensus 9 ReSAqRSReRKkqYI~EL---E~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~E 85 (202)
|.-..-+.++++.|-.|+ +..+..-+++-+.|-.++...++..+++..+|+.++..++.+|.+.+ ++.+.|+-+
T Consensus 34 ~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~---~i~d~l~~~ 110 (604)
T KOG3564|consen 34 RKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQ---LIKDMLKCD 110 (604)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHhcc
Confidence 344455666666665555 44455556677777888888889999999999999999999987655 334454444
Q ss_pred H-------HHHHHHhcccCCCCccccccc
Q 046677 86 I-------QHMKTVLGEKIPNLGALFGLS 107 (202)
Q Consensus 86 v-------qrLK~~~gei~~~~g~~~n~~ 107 (202)
| .+++.+..-.+..-..+.|.+
T Consensus 111 ~~~s~~~~d~~~f~~~~~~~~~~~S~na~ 139 (604)
T KOG3564|consen 111 ISGSIQLSDEQKFALAFLNRGQPSSSNAG 139 (604)
T ss_pred cccccccchhhhhhhhccccCCccccccC
Confidence 3 234444444444333344444
No 464
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.88 E-value=3.9e+02 Score=21.01 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLR 34 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ 34 (202)
..-+.+.+.-...|.
T Consensus 34 e~q~~e~~~~~~EL~ 48 (121)
T PRK09343 34 DLELREINKALEELE 48 (121)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 465
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=20.84 E-value=5e+02 Score=21.68 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=22.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 8 NRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 8 NReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
.|-...-.|.|-.+||..|-+.+ ....+...++.+.
T Consensus 50 ~ri~~~~arrRQ~qyIGKLmR~~-----d~e~I~~al~~~~ 85 (157)
T PF04751_consen 50 RRITSHEARRRQLQYIGKLMREE-----DPEAIRAALDALK 85 (157)
T ss_dssp GG--SHHHHHHHHHHHHHHGGGS------HHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHH
Confidence 34455567788999999998887 3344444444444
No 466
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=20.73 E-value=33 Score=31.06 Aligned_cols=42 Identities=33% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eL 61 (202)
+--|+|...++..|..-+..|.+++..|.+++..|.+||.-|
T Consensus 121 KT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 121 KTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666556555555555555666665554
No 467
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.67 E-value=5.1e+02 Score=21.67 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 28 HKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 28 ~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
..+..|+.....+...+..|......|...-.+++.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 468
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=20.63 E-value=6.1e+02 Score=22.59 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDA 56 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~s 56 (202)
.+.....+.|+.+.+..+.+...+.+.......
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~ 109 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRKA 109 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 345555556666666666666555554433333
No 469
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.35 E-value=8.1e+02 Score=23.94 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHH---hhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 28 HKMHNLRSNSTTLTAQLTL-LET---ESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 28 ~kVq~LQ~ENa~Lsaqltl-Lq~---~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
.++..|+.+...++.+|.. .-+ ....|.++-+.|+.++..++ .--+.+.+|++.+-..++-+|..
T Consensus 43 ~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e-------~~~~~~~~~l~~~ll~ipNi~~~ 111 (429)
T COG0172 43 RELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELE-------AALDELEAELDTLLLTIPNIPHE 111 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHHHhCCCCCcc
Confidence 3444455555555555541 111 12445555566666555553 33445567777777777777665
No 470
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.28 E-value=6e+02 Score=22.40 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
||..+..++.+...+...+..|......|...-.+++.
T Consensus 97 le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 97 LEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333333333333333
No 471
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=20.28 E-value=36 Score=26.50 Aligned_cols=37 Identities=32% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 35 SNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 35 ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
++.-.+...++.|+.....|.++-.+||.++..++.+
T Consensus 6 ~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~ 42 (118)
T PF08286_consen 6 NEKFRLAKELSDLESELESLQSELEELKEELEELEEQ 42 (118)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444555555555555444433
No 472
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=20.19 E-value=5.2e+02 Score=22.27 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
+..|+..+..|..-.......+.........-..+...+|.
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~ 64 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRA 64 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445444444444444444444433333333333333
No 473
>PRK04325 hypothetical protein; Provisional
Probab=20.15 E-value=3.6e+02 Score=19.73 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLL 47 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlL 47 (202)
..+|.++..|+...+-....|..|
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~L 28 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGL 28 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666665555554444443
No 474
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.06 E-value=5.3e+02 Score=25.37 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 18 RKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
.|+..++-+..++..+.....++..++..++-....|...-++||..+
T Consensus 443 qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~i 490 (507)
T PF05600_consen 443 QKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQI 490 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555666666666544
No 475
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=20.01 E-value=3.3e+02 Score=24.73 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLT 45 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~Lsaqlt 45 (202)
..|+.++..|..++..|..++.
T Consensus 35 ~~l~~~~~~lr~e~~~l~~~~~ 56 (308)
T PF11382_consen 35 DSLEDQFDSLREENDELRAELD 56 (308)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
Done!