Query 046677
Match_columns 202
No_of_seqs 160 out of 336
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 2.7E-14 9.1E-19 98.9 6.9 50 2-51 3-52 (55)
2 2wt7_A Proto-oncogene protein 99.1 1.7E-10 5.7E-15 81.2 8.4 53 3-55 5-57 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.1 2.2E-10 7.5E-15 79.8 8.4 53 3-55 4-56 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.1 4E-10 1.4E-14 78.8 7.7 52 3-54 4-55 (62)
5 2dgc_A Protein (GCN4); basic d 99.0 1.4E-09 4.7E-14 77.0 7.2 48 4-51 13-60 (63)
6 1gd2_E Transcription factor PA 98.9 2.4E-09 8.1E-14 77.7 7.6 61 2-62 10-70 (70)
7 1ci6_A Transcription factor AT 98.7 4.3E-08 1.5E-12 69.1 7.2 52 3-54 5-56 (63)
8 1gu4_A CAAT/enhancer binding p 98.0 2.5E-05 8.4E-10 57.5 8.2 48 4-51 19-66 (78)
9 1hjb_A Ccaat/enhancer binding 98.0 3.4E-05 1.2E-09 57.9 8.4 42 4-45 19-60 (87)
10 3a5t_A Transcription factor MA 97.8 9.1E-07 3.1E-11 68.8 -2.7 51 2-52 39-89 (107)
11 2oqq_A Transcription factor HY 97.6 7.6E-05 2.6E-09 49.6 5.1 35 20-54 2-36 (42)
12 2wt7_B Transcription factor MA 97.6 0.00026 9E-09 53.5 8.2 59 3-68 30-88 (90)
13 2jee_A YIIU; FTSZ, septum, coi 96.5 0.029 1E-06 41.7 10.1 68 22-96 7-78 (81)
14 2w6a_A ARF GTPase-activating p 94.0 0.23 7.8E-06 35.3 7.0 40 23-62 22-61 (63)
15 3s4r_A Vimentin; alpha-helix, 93.9 0.76 2.6E-05 34.1 10.3 64 28-91 23-91 (93)
16 3o0z_A RHO-associated protein 91.3 3.7 0.00013 33.9 12.0 55 10-71 79-133 (168)
17 2oqq_A Transcription factor HY 90.9 0.77 2.6E-05 30.4 6.0 36 30-65 5-40 (42)
18 3ol1_A Vimentin; structural ge 90.8 4.4 0.00015 31.0 11.4 74 20-93 19-106 (119)
19 3hnw_A Uncharacterized protein 90.3 2.6 8.9E-05 33.3 9.8 53 19-71 73-125 (138)
20 2jee_A YIIU; FTSZ, septum, coi 90.2 1.2 4.2E-05 32.9 7.3 46 23-68 22-67 (81)
21 3oja_B Anopheles plasmodium-re 90.2 4 0.00014 36.9 12.3 75 24-98 512-586 (597)
22 3efg_A Protein SLYX homolog; x 89.3 0.95 3.3E-05 32.8 6.1 49 21-69 14-62 (78)
23 3he5_A Synzip1; heterodimeric 88.9 2.1 7.3E-05 28.5 7.0 21 23-43 5-25 (49)
24 1go4_E MAD1 (mitotic arrest de 88.5 4.9 0.00017 30.6 9.8 22 77-98 75-96 (100)
25 3swy_A Cyclic nucleotide-gated 87.9 2.4 8.3E-05 28.3 6.8 44 25-71 2-45 (46)
26 1hjb_A Ccaat/enhancer binding 87.3 6.1 0.00021 29.2 9.5 45 41-99 35-79 (87)
27 3a7p_A Autophagy protein 16; c 86.9 3.4 0.00012 33.7 8.6 60 23-82 70-129 (152)
28 1gu4_A CAAT/enhancer binding p 86.8 5.7 0.00019 28.8 8.9 44 41-98 35-78 (78)
29 3oja_B Anopheles plasmodium-re 84.5 11 0.00037 34.1 11.5 74 24-97 505-578 (597)
30 3m48_A General control protein 84.4 1.2 4E-05 28.1 3.6 27 23-49 2-28 (33)
31 1deb_A APC protein, adenomatou 83.5 6.5 0.00022 27.1 7.3 40 24-63 6-45 (54)
32 3hnw_A Uncharacterized protein 82.9 12 0.00042 29.4 10.0 50 20-69 81-130 (138)
33 3s9g_A Protein hexim1; cyclin 82.5 5.5 0.00019 30.7 7.5 40 24-63 40-86 (104)
34 1nkp_B MAX protein, MYC proto- 82.2 2.5 8.5E-05 30.0 5.2 22 20-41 46-67 (83)
35 3swf_A CGMP-gated cation chann 81.3 5.5 0.00019 29.0 6.7 47 24-73 3-49 (74)
36 3o0z_A RHO-associated protein 81.3 22 0.00074 29.3 13.4 71 24-94 37-114 (168)
37 2oxj_A Hybrid alpha/beta pepti 81.1 3 0.0001 26.4 4.6 26 23-48 3-28 (34)
38 2v66_B Nuclear distribution pr 80.8 9.2 0.00032 29.6 8.3 47 23-69 37-83 (111)
39 3a7p_A Autophagy protein 16; c 80.3 17 0.00059 29.6 10.1 32 32-63 100-131 (152)
40 1go4_E MAD1 (mitotic arrest de 79.7 4.1 0.00014 31.1 5.9 26 23-48 14-39 (100)
41 2yy0_A C-MYC-binding protein; 79.4 3.7 0.00013 27.7 4.9 30 29-65 20-49 (53)
42 3c3g_A Alpha/beta peptide with 78.5 4.2 0.00014 25.6 4.6 26 23-48 2-27 (33)
43 1kd8_B GABH BLL, GCN4 acid bas 78.4 4 0.00014 26.1 4.6 28 23-50 3-30 (36)
44 1t2k_D Cyclic-AMP-dependent tr 78.1 7.1 0.00024 26.3 6.2 26 43-68 23-48 (61)
45 3cvf_A Homer-3, homer protein 78.1 4.7 0.00016 29.5 5.6 43 25-67 10-52 (79)
46 3c3f_A Alpha/beta peptide with 77.6 4.5 0.00015 25.6 4.6 28 22-49 2-29 (34)
47 1fmh_A General control protein 77.5 5.2 0.00018 24.8 4.7 29 23-51 3-31 (33)
48 1kd8_A GABH AIV, GCN4 acid bas 76.4 3.4 0.00012 26.5 3.8 28 23-50 3-30 (36)
49 3swk_A Vimentin; cytoskeleton, 76.2 20 0.00067 26.0 8.8 68 23-90 2-83 (86)
50 2v71_A Nuclear distribution pr 76.1 33 0.0011 28.6 11.5 8 56-63 102-109 (189)
51 2wt7_B Transcription factor MA 75.8 6.9 0.00024 29.3 6.0 65 22-94 22-86 (90)
52 2dfs_A Myosin-5A; myosin-V, in 75.7 39 0.0013 34.4 13.2 27 28-54 984-1010(1080)
53 3mq9_A Bone marrow stromal ant 75.6 42 0.0014 29.5 13.4 28 63-90 443-470 (471)
54 1t6f_A Geminin; coiled-coil, c 75.5 4.7 0.00016 25.9 4.3 29 35-63 7-35 (37)
55 1wlq_A Geminin; coiled-coil; 2 75.4 7.1 0.00024 29.0 5.9 29 35-63 38-66 (83)
56 2wq1_A General control protein 75.4 5.7 0.00019 25.0 4.6 27 23-49 2-28 (33)
57 1uo4_A General control protein 74.1 4.3 0.00015 25.7 3.8 27 23-49 3-29 (34)
58 3a7o_A Autophagy protein 16; c 73.9 14 0.00046 27.0 6.9 44 27-70 31-74 (75)
59 3mq7_A Bone marrow stromal ant 73.3 17 0.00057 28.7 7.9 15 79-93 94-108 (121)
60 2bni_A General control protein 73.2 4.7 0.00016 25.5 3.8 28 22-49 2-29 (34)
61 3he5_A Synzip1; heterodimeric 72.8 18 0.00062 24.0 7.0 42 46-94 7-48 (49)
62 3cvf_A Homer-3, homer protein 72.4 25 0.00087 25.6 8.7 54 33-93 4-57 (79)
63 1dip_A Delta-sleep-inducing pe 72.1 3.8 0.00013 30.2 3.7 28 36-63 16-43 (78)
64 2hy6_A General control protein 71.8 5.3 0.00018 25.3 3.8 27 23-49 3-29 (34)
65 1gd2_E Transcription factor PA 71.4 8.3 0.00028 27.4 5.3 31 39-69 33-63 (70)
66 2oxj_A Hybrid alpha/beta pepti 70.5 7.5 0.00026 24.6 4.3 18 78-95 16-33 (34)
67 1am9_A Srebp-1A, protein (ster 70.0 7.6 0.00026 27.7 4.9 21 46-66 54-74 (82)
68 2zxx_A Geminin; coiled-coil, c 69.7 11 0.00038 27.7 5.8 29 35-63 34-62 (79)
69 1ses_A Seryl-tRNA synthetase; 69.7 64 0.0022 29.1 13.0 90 3-99 5-107 (421)
70 1nlw_A MAD protein, MAX dimeri 69.2 11 0.00036 27.1 5.5 27 20-46 46-72 (80)
71 3na7_A HP0958; flagellar bioge 69.0 49 0.0017 27.5 13.2 8 82-89 155-162 (256)
72 2yy0_A C-MYC-binding protein; 68.8 9 0.00031 25.8 4.8 19 50-68 20-38 (53)
73 3vmx_A Voltage-gated hydrogen 68.5 17 0.00058 24.5 6.0 35 27-61 3-37 (48)
74 1jnm_A Proto-oncogene C-JUN; B 67.9 6.1 0.00021 26.8 3.8 27 42-68 22-48 (62)
75 2oto_A M protein; helical coil 67.4 42 0.0014 26.1 10.9 7 79-85 95-101 (155)
76 3cve_A Homer protein homolog 1 67.3 28 0.00095 25.0 7.4 44 25-68 4-47 (72)
77 1zme_C Proline utilization tra 67.2 5.2 0.00018 26.5 3.4 25 20-44 43-67 (70)
78 4emc_A Monopolin complex subun 67.2 23 0.00078 29.8 7.9 43 23-72 15-57 (190)
79 4ath_A MITF, microphthalmia-as 67.1 23 0.0008 26.1 7.1 44 20-74 38-81 (83)
80 3m48_A General control protein 67.0 8 0.00027 24.3 3.8 18 78-95 15-32 (33)
81 2wvr_A Geminin; DNA replicatio 66.9 14 0.00046 31.7 6.5 29 35-63 115-143 (209)
82 1dip_A Delta-sleep-inducing pe 66.9 6.2 0.00021 29.0 3.9 24 20-43 21-44 (78)
83 1ci6_A Transcription factor AT 66.2 19 0.00065 24.6 6.1 30 41-70 22-51 (63)
84 2v66_B Nuclear distribution pr 66.1 43 0.0015 25.8 12.8 48 24-71 6-64 (111)
85 4ati_A MITF, microphthalmia-as 65.8 2.9 9.8E-05 32.1 2.0 23 51-73 93-115 (118)
86 1nkp_A C-MYC, MYC proto-oncoge 65.1 15 0.0005 26.7 5.7 16 53-68 70-85 (88)
87 4etp_A Kinesin-like protein KA 64.7 25 0.00087 31.6 8.3 53 32-91 7-59 (403)
88 1wle_A Seryl-tRNA synthetase; 64.6 92 0.0032 29.1 13.7 66 27-99 83-159 (501)
89 2v71_A Nuclear distribution pr 63.9 63 0.0021 26.9 11.2 47 23-69 90-136 (189)
90 1uii_A Geminin; human, DNA rep 63.5 10 0.00036 28.1 4.6 29 35-63 46-74 (83)
91 3q8t_A Beclin-1; autophagy, AT 63.3 42 0.0014 24.7 10.3 46 23-68 6-51 (96)
92 3m9b_A Proteasome-associated A 63.1 9.1 0.00031 33.4 4.9 22 23-44 19-40 (251)
93 3c3f_A Alpha/beta peptide with 63.0 12 0.00043 23.6 4.2 17 79-95 17-33 (34)
94 3mq7_A Bone marrow stromal ant 62.8 35 0.0012 26.9 7.7 37 30-66 73-109 (121)
95 2dgc_A Protein (GCN4); basic d 62.4 12 0.00042 25.7 4.6 20 44-63 32-51 (63)
96 1i84_S Smooth muscle myosin he 61.7 28 0.00097 35.2 8.8 10 26-35 862-871 (1184)
97 3ghg_A Fibrinogen alpha chain; 61.1 40 0.0014 32.5 9.2 46 17-62 106-151 (562)
98 3i00_A HIP-I, huntingtin-inter 60.8 39 0.0013 26.1 7.7 69 22-93 16-84 (120)
99 3c3g_A Alpha/beta peptide with 60.8 15 0.0005 23.1 4.2 17 79-95 16-32 (33)
100 3m9b_A Proteasome-associated A 60.6 13 0.00045 32.4 5.4 41 44-91 56-96 (251)
101 3u06_A Protein claret segregat 60.6 29 0.00099 31.5 8.0 37 30-66 5-41 (412)
102 3uux_B Mitochondrial division 60.3 28 0.00096 30.3 7.4 49 22-70 178-226 (242)
103 2dq0_A Seryl-tRNA synthetase; 60.0 1E+02 0.0036 28.1 12.2 66 27-99 44-112 (455)
104 3vkg_A Dynein heavy chain, cyt 58.4 53 0.0018 37.6 10.9 65 26-90 2026-2090(3245)
105 3cve_A Homer protein homolog 1 57.9 49 0.0017 23.7 10.6 38 52-89 10-47 (72)
106 2er8_A Regulatory protein Leu3 57.7 5.7 0.0002 26.6 2.2 23 19-41 47-69 (72)
107 3na7_A HP0958; flagellar bioge 57.4 82 0.0028 26.1 12.5 49 21-69 32-80 (256)
108 2efr_A General control protein 57.3 74 0.0025 25.6 11.1 15 77-91 140-154 (155)
109 2r2v_A GCN4 leucine zipper; co 57.1 22 0.00074 22.5 4.6 27 23-49 3-29 (34)
110 1i84_S Smooth muscle myosin he 56.5 58 0.002 33.0 10.0 11 26-36 883-893 (1184)
111 1dh3_A Transcription factor CR 55.9 16 0.00054 24.5 4.1 27 43-69 23-49 (55)
112 3tnu_B Keratin, type II cytosk 54.5 67 0.0023 24.3 9.0 26 23-48 38-63 (129)
113 3i00_A HIP-I, huntingtin-inter 54.4 72 0.0025 24.6 10.6 45 16-67 35-79 (120)
114 3ol1_A Vimentin; structural ge 54.0 68 0.0023 24.2 9.8 61 34-94 19-79 (119)
115 2hy6_A General control protein 53.2 18 0.00062 22.8 3.7 17 79-95 17-33 (34)
116 2bni_A General control protein 53.1 18 0.00061 22.8 3.7 17 79-95 17-33 (34)
117 3cl3_D NF-kappa-B essential mo 53.1 29 0.001 27.6 5.8 57 24-80 19-79 (130)
118 2oa5_A Hypothetical protein BQ 52.9 7.7 0.00026 30.2 2.4 23 23-45 10-32 (110)
119 2wq1_A General control protein 52.9 25 0.00084 22.1 4.3 17 79-95 16-32 (33)
120 1a93_B MAX protein, coiled coi 52.8 22 0.00077 22.3 4.1 25 42-66 7-31 (34)
121 1nkp_B MAX protein, MYC proto- 51.4 18 0.00062 25.4 4.1 20 47-66 59-78 (83)
122 2wuj_A Septum site-determining 50.9 17 0.00058 24.4 3.6 24 22-45 28-51 (57)
123 3swk_A Vimentin; cytoskeleton, 50.7 67 0.0023 23.1 7.2 58 37-94 2-59 (86)
124 3qne_A Seryl-tRNA synthetase, 50.7 1.6E+02 0.0055 27.5 12.6 65 28-99 47-114 (485)
125 2ocy_A RAB guanine nucleotide 50.2 1E+02 0.0034 24.9 11.2 22 22-43 14-35 (154)
126 2j5u_A MREC protein; bacterial 50.1 9.9 0.00034 32.2 2.9 40 54-97 24-63 (255)
127 3a2a_A Voltage-gated hydrogen 50.1 42 0.0014 23.3 5.6 35 27-61 10-44 (58)
128 3m0d_C TNF receptor-associated 50.0 58 0.002 22.2 9.4 30 19-48 4-33 (65)
129 3u1c_A Tropomyosin alpha-1 cha 50.0 74 0.0025 23.4 13.1 47 20-66 22-68 (101)
130 2xdj_A Uncharacterized protein 49.7 71 0.0024 23.1 7.2 38 23-60 22-59 (83)
131 2xu6_A MDV1 coiled coil; prote 49.3 37 0.0013 24.5 5.4 48 21-68 21-68 (72)
132 3u1c_A Tropomyosin alpha-1 cha 48.3 79 0.0027 23.2 12.1 65 22-86 31-95 (101)
133 4h22_A Leucine-rich repeat fli 48.2 72 0.0025 24.4 7.2 9 82-90 70-78 (103)
134 3u59_A Tropomyosin beta chain; 47.9 78 0.0027 23.0 10.9 49 20-68 22-70 (101)
135 2ocy_A RAB guanine nucleotide 47.7 1.1E+02 0.0037 24.7 10.8 39 61-99 113-151 (154)
136 3nmd_A CGMP dependent protein 47.1 58 0.002 23.4 6.1 34 60-93 37-70 (72)
137 3he4_A Synzip6; heterodimeric 46.8 26 0.0009 23.8 4.0 35 21-55 17-51 (56)
138 2dq3_A Seryl-tRNA synthetase; 45.9 71 0.0024 28.8 8.0 41 52-99 71-111 (425)
139 1hlo_A Protein (transcription 45.3 21 0.00071 25.0 3.5 12 22-33 58-69 (80)
140 2lw1_A ABC transporter ATP-bin 44.6 72 0.0024 22.7 6.4 26 21-46 22-47 (89)
141 3mq9_A Bone marrow stromal ant 44.3 1E+02 0.0036 27.0 8.7 26 21-46 397-422 (471)
142 3tnu_A Keratin, type I cytoske 44.1 1E+02 0.0035 23.3 10.0 26 23-48 40-65 (131)
143 1jcd_A Major outer membrane li 43.9 71 0.0024 21.5 7.2 22 30-51 6-27 (52)
144 2eqb_B RAB guanine nucleotide 43.3 1E+02 0.0036 23.2 8.5 48 21-68 12-59 (97)
145 3qne_A Seryl-tRNA synthetase, 43.3 1E+02 0.0036 28.8 8.9 24 79-102 91-114 (485)
146 2wt7_A Proto-oncogene protein 42.4 76 0.0026 21.4 9.1 27 42-68 23-49 (63)
147 1joc_A EEA1, early endosomal a 41.8 1.1E+02 0.0038 23.1 8.0 26 21-46 11-36 (125)
148 3jsv_C NF-kappa-B essential mo 41.4 1.1E+02 0.0038 23.0 8.6 47 7-53 9-58 (94)
149 2w83_C C-JUN-amino-terminal ki 41.2 51 0.0017 24.1 5.1 46 26-71 7-59 (77)
150 1nlw_A MAD protein, MAX dimeri 41.1 38 0.0013 24.1 4.5 20 46-65 58-77 (80)
151 3u59_A Tropomyosin beta chain; 40.7 1E+02 0.0035 22.4 12.1 42 25-66 34-75 (101)
152 2c9l_Y EB1, zebra, BZLF1 trans 40.6 91 0.0031 21.7 6.7 21 6-26 7-27 (63)
153 3qh9_A Liprin-beta-2; coiled-c 40.5 1.1E+02 0.0037 22.6 9.6 54 32-85 23-76 (81)
154 1p9i_A Cortexillin I/GCN4 hybr 40.3 29 0.001 21.1 3.1 17 52-68 9-25 (31)
155 3lph_A Protein REV; helix-loop 40.3 11 0.00037 27.4 1.4 13 170-182 22-34 (72)
156 3oa7_A Head morphogenesis prot 40.1 92 0.0031 26.5 7.3 43 30-72 32-74 (206)
157 3qh9_A Liprin-beta-2; coiled-c 40.0 1.1E+02 0.0038 22.5 7.8 43 49-91 19-61 (81)
158 3bas_A Myosin heavy chain, str 39.3 1E+02 0.0036 22.0 8.7 43 22-64 15-57 (89)
159 3tnu_B Keratin, type II cytosk 38.9 1.2E+02 0.0042 22.8 10.9 32 35-66 36-67 (129)
160 2wuj_A Septum site-determining 38.6 29 0.001 23.2 3.3 27 44-70 29-55 (57)
161 3efg_A Protein SLYX homolog; x 38.0 1.1E+02 0.0037 21.8 6.9 23 25-47 11-33 (78)
162 3vkg_A Dynein heavy chain, cyt 37.7 1.6E+02 0.0056 33.8 10.6 78 16-96 2023-2103(3245)
163 3s4r_A Vimentin; alpha-helix, 36.7 1.2E+02 0.0041 22.0 8.6 53 33-94 14-66 (93)
164 2v4h_A NF-kappa-B essential mo 36.5 1.5E+02 0.005 22.9 11.5 44 8-51 32-78 (110)
165 1wle_A Seryl-tRNA synthetase; 36.2 1.8E+02 0.0063 27.0 9.4 60 3-62 44-104 (501)
166 3ra3_A P1C; coiled coil domain 35.4 22 0.00075 21.2 2.0 12 33-44 5-16 (28)
167 1hwt_C Protein (heme activator 35.2 43 0.0015 22.5 3.8 23 19-41 56-78 (81)
168 3bbp_D GRIP and coiled-coil do 35.1 45 0.0015 24.1 3.9 38 26-63 20-57 (71)
169 2e7s_A RAB guanine nucleotide 34.7 55 0.0019 26.0 4.8 35 33-67 44-78 (135)
170 2w6a_A ARF GTPase-activating p 34.5 1.2E+02 0.0041 21.3 6.0 10 29-38 49-58 (63)
171 1m1j_B Fibrinogen beta chain; 34.4 2.9E+02 0.0099 25.8 10.7 14 23-36 102-115 (464)
172 4gkw_A Spindle assembly abnorm 33.6 1.9E+02 0.0066 23.4 7.9 25 24-48 101-125 (167)
173 1uii_A Geminin; human, DNA rep 33.6 71 0.0024 23.6 4.9 33 55-94 45-77 (83)
174 2j5u_A MREC protein; bacterial 33.3 22 0.00075 30.1 2.4 14 34-47 25-38 (255)
175 4etp_A Kinesin-like protein KA 32.5 1.7E+02 0.0059 26.2 8.3 25 24-48 13-37 (403)
176 3u06_A Protein claret segregat 32.4 1.3E+02 0.0045 27.1 7.6 57 35-91 3-59 (412)
177 2akf_A Coronin-1A; coiled coil 32.1 45 0.0015 20.6 3.0 24 25-48 3-26 (32)
178 3m91_A Proteasome-associated A 32.0 1.1E+02 0.0039 20.3 6.3 34 32-65 13-46 (51)
179 2xnx_M M protein, M1-BC1; cell 32.0 24 0.0008 28.7 2.3 47 49-95 87-133 (146)
180 2dq0_A Seryl-tRNA synthetase; 31.7 2E+02 0.0069 26.2 8.7 99 3-102 5-112 (455)
181 4emc_A Monopolin complex subun 31.6 2.3E+02 0.0079 23.7 9.9 44 22-65 21-64 (190)
182 2z5i_A TM, general control pro 30.1 1.2E+02 0.0041 20.0 5.5 33 10-42 8-40 (52)
183 1gk6_A Vimentin; intermediate 30.1 1.2E+02 0.0042 20.2 5.8 32 25-56 4-35 (59)
184 1deq_A Fibrinogen (alpha chain 29.1 1.5E+02 0.005 27.5 7.2 45 21-65 113-157 (390)
185 3tq2_A KE1; parallel three hel 28.9 1.1E+02 0.0037 19.1 5.1 31 38-68 4-34 (36)
186 4b4t_K 26S protease regulatory 28.8 88 0.003 28.4 5.8 55 30-91 37-91 (428)
187 4e61_A Protein BIM1; EB1-like 28.8 1.2E+02 0.0039 23.3 5.6 33 39-71 8-40 (106)
188 3viq_B Mating-type switching p 28.4 1.8E+02 0.006 21.4 6.3 24 25-48 5-28 (85)
189 2no2_A HIP-I, huntingtin-inter 28.2 1.9E+02 0.0064 21.6 10.1 24 11-34 19-42 (107)
190 2xdj_A Uncharacterized protein 28.1 1.7E+02 0.0058 21.1 8.2 32 37-68 22-53 (83)
191 2efr_A General control protein 27.8 2.3E+02 0.008 22.6 10.9 13 56-68 77-89 (155)
192 3ra3_B P2F; coiled coil domain 27.0 64 0.0022 19.2 3.0 8 37-44 9-16 (28)
193 1lwu_C Fibrinogen gamma chain; 27.0 2.1E+02 0.0072 25.3 7.8 16 27-42 18-33 (323)
194 3lss_A Seryl-tRNA synthetase; 26.8 2.7E+02 0.0093 25.9 8.8 58 25-82 48-138 (484)
195 3v86_A De novo design helix; c 26.7 92 0.0032 18.4 3.6 20 25-44 4-23 (27)
196 2ve7_A Kinetochore protein HEC 25.4 93 0.0032 27.0 5.1 28 29-56 186-213 (315)
197 2z5i_A TM, general control pro 24.2 1.6E+02 0.0054 19.5 5.0 21 25-45 9-29 (52)
198 1jcd_A Major outer membrane li 24.2 1.7E+02 0.0056 19.6 7.2 29 23-51 6-34 (52)
199 3a2a_A Voltage-gated hydrogen 24.0 1.6E+02 0.0054 20.4 5.0 40 49-95 11-50 (58)
200 1fxk_A Prefoldin; archaeal pro 24.0 1.9E+02 0.0065 20.3 6.3 10 25-34 69-78 (107)
201 1fmh_B General control protein 23.3 1.3E+02 0.0044 18.5 3.9 19 52-70 11-29 (33)
202 2oto_A M protein; helical coil 23.2 2.6E+02 0.0088 21.5 10.9 23 26-48 55-77 (155)
203 3tnu_A Keratin, type I cytoske 23.1 2.4E+02 0.0083 21.2 11.5 24 23-46 47-70 (131)
204 2oa5_A Hypothetical protein BQ 22.8 43 0.0015 25.9 2.2 22 45-66 11-32 (110)
205 1lwu_C Fibrinogen gamma chain; 22.8 1.8E+02 0.006 25.8 6.4 21 33-53 17-37 (323)
206 3coq_A Regulatory protein GAL4 22.8 84 0.0029 21.2 3.5 23 20-42 44-66 (89)
207 3htk_A Structural maintenance 22.8 1.6E+02 0.0055 19.0 7.9 32 20-51 11-42 (60)
208 3vp9_A General transcriptional 22.4 2.4E+02 0.0083 20.9 8.8 46 46-94 40-85 (92)
209 2v4h_A NF-kappa-B essential mo 22.4 2.7E+02 0.0092 21.4 10.8 71 23-93 26-99 (110)
210 2dnx_A Syntaxin-12; snare, HAB 22.4 2.5E+02 0.0086 21.1 7.2 46 23-68 30-77 (130)
211 2fic_A Bridging integrator 1; 22.1 3E+02 0.01 21.9 7.4 17 75-91 195-211 (251)
212 1zxa_A CGMP-dependent protein 21.5 1.5E+02 0.0052 20.8 4.7 30 18-47 22-51 (67)
213 1ic2_A Tropomyosin alpha chain 21.1 2.2E+02 0.0074 19.8 8.6 32 39-70 24-55 (81)
214 3bas_A Myosin heavy chain, str 21.1 2.3E+02 0.0079 20.2 12.6 47 22-68 36-82 (89)
215 3viq_B Mating-type switching p 21.0 2.5E+02 0.0086 20.6 6.5 20 23-42 10-29 (85)
216 3q0x_A Centriole protein; cent 20.8 3.2E+02 0.011 23.2 7.4 60 2-67 165-224 (228)
217 3s9g_A Protein hexim1; cyclin 20.6 2.9E+02 0.0099 21.1 8.9 24 40-63 35-58 (104)
218 3e98_A GAF domain of unknown f 20.5 3.7E+02 0.013 22.4 7.8 59 27-85 71-132 (252)
219 3he4_A Synzip6; heterodimeric 20.4 2.1E+02 0.007 19.3 5.8 35 35-69 17-51 (56)
220 2ve7_C Kinetochore protein NUF 20.1 62 0.0021 27.4 2.8 49 9-57 136-184 (250)
221 1nkp_A C-MYC, MYC proto-oncoge 20.1 2.4E+02 0.0083 20.0 6.4 13 21-33 52-64 (88)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.51 E-value=2.7e-14 Score=98.94 Aligned_cols=50 Identities=28% Similarity=0.386 Sum_probs=47.1
Q ss_pred chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
.+|+++||+||++||.||+.|+++||.+|..|+.||..|..+++.|...+
T Consensus 3 ~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 3 EVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999888765
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.14 E-value=1.7e-10 Score=81.17 Aligned_cols=53 Identities=21% Similarity=0.349 Sum_probs=47.3
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH
Q 046677 3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLD 55 (202)
Q Consensus 3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~ 55 (202)
+|+.+||+||+|||.||+.|+.+|+.+|..|+.+|..|..+|..|..+...|.
T Consensus 5 rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 5 IRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999987666655443
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.13 E-value=2.2e-10 Score=79.77 Aligned_cols=53 Identities=30% Similarity=0.473 Sum_probs=47.3
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH
Q 046677 3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLD 55 (202)
Q Consensus 3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~ 55 (202)
+|+..||++|++||.||+.|+.+||.+|..|..+|..|..+|+.|..+...|.
T Consensus 4 ~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 4 KFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999987666655443
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.07 E-value=4e-10 Score=78.77 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=47.1
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 046677 3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSL 54 (202)
Q Consensus 3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L 54 (202)
+|...||+||++||.||+.|+.+||.+|..|..+|..|..+++.|..+...|
T Consensus 4 rrr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 4 RKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999998777766554
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.97 E-value=1.4e-09 Score=77.04 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=42.4
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
+...||+||+|||.||+.|+.+||.+|..|..+|..|..++..|....
T Consensus 13 KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 13 KRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999999999999999999999999999999888776543
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.94 E-value=2.4e-09 Score=77.68 Aligned_cols=61 Identities=23% Similarity=0.270 Sum_probs=55.3
Q ss_pred chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 046677 2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLK 62 (202)
Q Consensus 2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK 62 (202)
.||...||.|++..|+||.+||.+||.+|..|+.++..|..++..|......|.+||..||
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999999998888888888888888888765
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.70 E-value=4.3e-08 Score=69.06 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=44.5
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 046677 3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSL 54 (202)
Q Consensus 3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L 54 (202)
++...||.+|+|+|.||+.++.+|+.+|..|+.+|..|..+|+.|+.++..|
T Consensus 5 rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 5 KKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999998776665544
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.01 E-value=2.5e-05 Score=57.55 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=42.0
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
|-.+|.++|+|||++++.-..+++.+|..|+.||..|..+|..|..+.
T Consensus 19 rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 19 RRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999988887554443
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=97.97 E-value=3.4e-05 Score=57.87 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=37.7
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLT 45 (202)
Q Consensus 4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~Lsaqlt 45 (202)
|-.+|.++|+|||++++.-..+++.+|..|+.||..|..+|.
T Consensus 19 rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 19 RRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999888888877765
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=97.81 E-value=9.1e-07 Score=68.81 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=40.2
Q ss_pred chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 046677 2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESN 52 (202)
Q Consensus 2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~ 52 (202)
.||-++||.+|+++|.||+..+.+||.++..|+.+...|..++..+..+..
T Consensus 39 ~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~ 89 (107)
T 3a5t_A 39 RRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELD 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTT
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999888777766666555544444433
No 11
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.65 E-value=7.6e-05 Score=49.60 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSL 54 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L 54 (202)
+.|+.|||.+|..|+..|++|..+++.|++++.+|
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 58999999999999999999999998776665544
No 12
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.60 E-value=0.00026 Score=53.51 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=45.9
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
||-++||.+|+-.|.||..-+.+||.++..|..+...|..+++.+ ..|-..+|.+.++|
T Consensus 30 RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~-------~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 30 RRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL-------ARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTT
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 689999999999999999999999999888887777776665544 44455555555443
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.53 E-value=0.029 Score=41.68 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHhccc
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQ----HMKTVLGEK 96 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Evq----rLK~~~gei 96 (202)
-++.||.||+.+-..++-|.-++..|..++..|..+|.+++..-+.+ +..|+.|+.|.. ||+..+|.+
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L-------~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREEL-------ERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999988888888888888888888888888887766555 345555555543 677776654
No 14
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=93.96 E-value=0.23 Score=35.30 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLK 62 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK 62 (202)
+.-=|.||+.|-.-|..|+.++..++.+...|.+||..||
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 4556899999999999999999999999999999999987
No 15
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=93.92 E-value=0.76 Score=34.12 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH-----hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 28 HKMHNLRSNSTTLTAQLTLLETESN-----SLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 28 ~kVq~LQ~ENa~LsaqltlLq~~~~-----~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
.||..|+.+|..|..++..+..... .-.++-..||..|..+.....-.+...+.|.+++.++|.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999888876432 245677778877776655554444555567777777765
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.27 E-value=3.7 Score=33.91 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 10 MSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 10 eSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
+.=+|+|-+--.-+.||+.+|..|+.|...++...+.+. .+|+.|-.++..+|..
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~-------~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE-------GERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 445677788888889999999999888888887776544 4555555555555443
No 17
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=90.87 E-value=0.77 Score=30.37 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 30 MHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 30 Vq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
|.+|+.....|..+++.|+.....|..||.-||+-+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 456666677777777777777777777777666543
No 18
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.83 E-value=4.4 Score=30.96 Aligned_cols=74 Identities=8% Similarity=0.118 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------HhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETES--------------NSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSE 85 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~--------------~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~E 85 (202)
-.||.+|-++|..+..+++.|..++.-++... ..+.++-..||.-+...--..-=-++--+.|++|
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999998888776665433 3333444455554433211111112445666677
Q ss_pred HHHHHHHh
Q 046677 86 IQHMKTVL 93 (202)
Q Consensus 86 vqrLK~~~ 93 (202)
+.-||...
T Consensus 99 l~FLKk~h 106 (119)
T 3ol1_A 99 IAFLKKLH 106 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666543
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.26 E-value=2.6 Score=33.28 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 19 KKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 19 KkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
.+....+|+..+..+..|...|+.++..++.....+..++.+|+.++..++.+
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888888888888888888888888888888888888777766543
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.22 E-value=1.2 Score=32.89 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
|.-|.-+|..|..+|..|..++..+......|..||..|+....+-
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666888888888755443
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.20 E-value=4 Score=36.90 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIP 98 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~ 98 (202)
..++.+.+.++.++..+...++...+++..+..|..+++.+++.......-..-.+..+++|+..|-..++.-|+
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 334444444444445555555555555555556666666655554433332223344455555555555544443
No 22
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=89.33 E-value=0.95 Score=32.78 Aligned_cols=49 Identities=14% Similarity=-0.005 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
..|.+||.++...+.....|...|+.-++..+.|..+...|..|+.+++
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4688899999988888888888888888888777777777777666554
No 23
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=88.94 E-value=2.1 Score=28.54 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQ 43 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~Lsaq 43 (202)
+..||.+|.+|++||.+|+.+
T Consensus 5 vaqlenevaslenenetlkkk 25 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHh
Confidence 566777777777777666554
No 24
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=88.53 E-value=4.9 Score=30.65 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhcccCC
Q 046677 77 SLNDQIRSEIQHMKTVLGEKIP 98 (202)
Q Consensus 77 aLnE~Lk~EvqrLK~~~gei~~ 98 (202)
-.-+.|.+||++||..+.-+-.
T Consensus 75 ~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4567789999999999977665
No 25
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=87.90 E-value=2.4 Score=28.26 Aligned_cols=44 Identities=30% Similarity=0.343 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
++|.+|..|++-...|..+++.|-.++ .+-...||+|+..+|.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~---~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEY---NATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 677778777777777766666554443 45567899999988864
No 26
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=87.32 E-value=6.1 Score=29.20 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 41 TAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 41 saqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
..+...+......|..||..|+.+++ .|+.|+..|+..+-++|+.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~--------------~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVE--------------QLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCcHH
Confidence 34445666777788888888887665 4567889999999888874
No 27
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.88 E-value=3.4 Score=33.71 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI 82 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L 82 (202)
|..|+.+...|+.++..|...+..-......+..|.-.|..++..++....-....|..|
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333344444444444444444444443333444443
No 28
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=86.77 E-value=5.7 Score=28.80 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 046677 41 TAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIP 98 (202)
Q Consensus 41 saqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~ 98 (202)
......+......|..||..|+.++.. |+.|+..||..+-.+|+
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~--------------L~~E~~~Lr~ll~q~p~ 78 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQ--------------LSRELSTLRNLFKQLPE 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHCCC
Confidence 444556677778888888888876653 45788888888776663
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.47 E-value=11 Score=34.05 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKI 97 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~ 97 (202)
..++..+..++...+.+..++...+++......+-..++.++..++....-.....+.++.|...++..+.+.-
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666666666666655555666666666667777666666677778888887766665443
No 30
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=84.38 E-value=1.2 Score=28.12 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLET 49 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~ 49 (202)
+..||.||..|-.+|+.|..++..|..
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 467999999999999999998877653
No 31
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=83.49 E-value=6.5 Score=27.05 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
+.|-+.|..|..||+.|+.++..-......|++|-.-+|.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKe 45 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKE 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHH
Confidence 5788999999999999999988877777778777777665
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.95 E-value=12 Score=29.35 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
..-+.+++.++..|..+..++..++..+.++...|..++++|..++..++
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666666665555553
No 33
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=82.53 E-value=5.5 Score=30.70 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHhhHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTA-------QLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~Lsa-------qltlLq~~~~~L~sEN~eLK~ 63 (202)
-+||.++..++.|+..|.. +|..|..+...|.+||..|+.
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3577788777777766654 444444444444444444443
No 34
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=82.20 E-value=2.5 Score=29.99 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLT 41 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~Ls 41 (202)
..||..|..++..|+.+...|.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444333
No 35
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=81.31 E-value=5.5 Score=29.02 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIH 73 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~ 73 (202)
.+||.+|..|+.-...|..+++.|-.++ .+-...||+||..+|....
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy---~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEY---ESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 4577777777777777766666554443 4556789999999986544
No 36
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.25 E-value=22 Score=29.35 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh-----HHHHH--HHHHHHHHHHHHHHHHHhc
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ-----KIHLQ--DSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq-----q~~Lk--daLnE~Lk~EvqrLK~~~g 94 (202)
.|+-..++.++..+..|...+..|+.....|.-+...|...|..=.. ...+. ..-...|..|+.++|....
T Consensus 37 tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~ 114 (168)
T 3o0z_A 37 TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE 114 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555444443322110 01111 1234566777777776553
No 37
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=81.12 E-value=3 Score=26.41 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
+..||.||..|-.+|..|..++..|.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 67899999999988888888877664
No 38
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.77 E-value=9.2 Score=29.55 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
+..|+.++..|...+..|...|-.|+..++.|.-..+..-.-|+.++
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 44455555555555555566666566666555555555555444443
No 39
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.31 E-value=17 Score=29.58 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 32 NLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 32 ~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
.|+.|...|..++..++.....|..||..|-.
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444433
No 40
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=79.72 E-value=4.1 Score=31.07 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
+..|..+|.+|+.|+..|..++..|+
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666665555555444
No 41
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=79.39 E-value=3.7 Score=27.74 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 29 KMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 29 kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
.|..|..||..|..+ +..|..++.+|+.+|
T Consensus 20 d~eaLk~E~~eLk~k-------~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEK-------YEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 344444444444444 445555566666554
No 42
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=78.47 E-value=4.2 Score=25.61 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
+..||.||..|-.++..|..++..|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56799999999999999888887664
No 43
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=78.44 E-value=4 Score=26.12 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETE 50 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~ 50 (202)
+..||.||..|-.+++.|..++..|..-
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5789999999999999998888776543
No 44
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.10 E-value=7.1 Score=26.31 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=15.1
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 43 QLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 43 qltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
.+..|+.+...|..+|..|+..+..|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666555444
No 45
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=78.09 E-value=4.7 Score=29.54 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
++..+++.++.+|..|..+|..++.....-..+-.-+|..+..
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 52 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGR 52 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666555555554444444433
No 46
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=77.60 E-value=4.5 Score=25.59 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLET 49 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~ 49 (202)
.+..||.||..|-.++..|..++..|..
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3678999999999999999888876643
No 47
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=77.50 E-value=5.2 Score=24.79 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
+..||.+|..-+.||-.|..+++.|+.++
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 46788888888888888888888777665
No 48
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=76.35 E-value=3.4 Score=26.45 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETE 50 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~ 50 (202)
+..||.||..|-.+++.|..++..|..-
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4678999999999998888888766543
No 49
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=76.21 E-value=20 Score=26.03 Aligned_cols=68 Identities=9% Similarity=0.157 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETE--------------SNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQH 88 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~--------------~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Evqr 88 (202)
|.+|-.+|..+..+++.|..++.-++.. ...+.++-..||.-+...--..-=-++--+.|++||.-
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776666554433 23333444444444433222222223445566666665
Q ss_pred HH
Q 046677 89 MK 90 (202)
Q Consensus 89 LK 90 (202)
||
T Consensus 82 Lk 83 (86)
T 3swk_A 82 LK 83 (86)
T ss_dssp HT
T ss_pred Hh
Confidence 55
No 50
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.11 E-value=33 Score=28.60 Aligned_cols=8 Identities=38% Similarity=0.277 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 046677 56 AEKAVLKH 63 (202)
Q Consensus 56 sEN~eLK~ 63 (202)
..+..|+.
T Consensus 102 ~~~~~l~~ 109 (189)
T 2v71_A 102 AIKEQLHK 109 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 51
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=75.76 E-value=6.9 Score=29.28 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
.+..|-.+=.+|.+-...-+=+...+. ....|..++..|...++.|. ..++.+..|++.+|..+.
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~-q~~~LE~e~~~L~~e~~~L~-------~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQ-QKHHLENEKTQLIQQVEQLK-------QEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 344444455555555554444444443 33667777777766665553 345556667777776653
No 52
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=75.66 E-value=39 Score=34.39 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 046677 28 HKMHNLRSNSTTLTAQLTLLETESNSL 54 (202)
Q Consensus 28 ~kVq~LQ~ENa~LsaqltlLq~~~~~L 54 (202)
.+|..|+.|...+..++..+..+...+
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333333333
No 53
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=75.60 E-value=42 Score=29.54 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=16.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046677 63 HRLEITLQKIHLQDSLNDQIRSEIQHMK 90 (202)
Q Consensus 63 ~RLqsLeqq~~LkdaLnE~Lk~EvqrLK 90 (202)
.|++.+|.+..-....-+.+.+||.|+|
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666555544444455577887776
No 54
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=75.49 E-value=4.7 Score=25.90 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 35 SNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 35 ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
.||.+|...|+.-+.+...|..||.+|+.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 58899999999999999999999998863
No 55
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=75.38 E-value=7.1 Score=29.03 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 35 SNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 35 ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
.||..|...|..++.+...|..||.+|+.
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999876
No 56
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=75.38 E-value=5.7 Score=24.98 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLET 49 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~ 49 (202)
+..||.||..|-.+++.|..++..|..
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567999999999999998888876643
No 57
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=74.11 E-value=4.3 Score=25.70 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLET 49 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~ 49 (202)
+..||.||..|-.+|+.|..+++.|..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567999999999999999888876653
No 58
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=73.93 E-value=14 Score=27.02 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 27 EHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 27 E~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
|.++..|+...+-=+.-...|..+..++.-||+.|..|+..+.+
T Consensus 31 e~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 31 EQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 44444554444444444566777777888899999999877643
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=73.31 E-value=17 Score=28.71 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHh
Q 046677 79 NDQIRSEIQHMKTVL 93 (202)
Q Consensus 79 nE~Lk~EvqrLK~~~ 93 (202)
-|.|+++.+-|.+-+
T Consensus 94 ~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 94 VERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhchhhhhHh
Confidence 344444444444333
No 60
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=73.19 E-value=4.7 Score=25.53 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLET 49 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~ 49 (202)
.+..||.||..|-.++..|..+++.|..
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3568999999999999999888876653
No 61
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=72.82 E-value=18 Score=24.04 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=25.3
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 46 LLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 46 lLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
.|+.+...|..||..||.+ .+ + +.-+...|.+||-.||..+.
T Consensus 7 qlenevaslenenetlkkk--nl----h-kkdliaylekeianlrkkie 48 (49)
T 3he5_A 7 QLENEVASLENENETLKKK--NL----H-KKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HH----H-HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccHHHHHh--cc----c-HHHHHHHHHHHHHHHHHHhc
Confidence 3444555666677777652 12 1 22455677889988887653
No 62
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=72.40 E-value=25 Score=25.60 Aligned_cols=54 Identities=15% Similarity=0.300 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 33 LRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 33 LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
|++++.+++.++. .+..+|.+|+.++..++....=...-.+.++.|+.++-..+
T Consensus 4 l~~e~e~~~~klq-------~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 4 MAAEREETQQKVQ-------DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp ------CTTHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555444 55666677777777776544433333555566665554433
No 63
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=72.08 E-value=3.8 Score=30.16 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 36 NSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 36 ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
|...|+.+|..|..++..|..||+.||.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777765
No 64
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=71.81 E-value=5.3 Score=25.29 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLET 49 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~ 49 (202)
+..||.+|..|-.+|+.|..++..|..
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567999999999999999888876653
No 65
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=71.41 E-value=8.3 Score=27.42 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 39 TLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 39 ~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
.|..++..|+..+..|..||..|+..+..|.
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556667788888877766654
No 66
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=70.46 E-value=7.5 Score=24.57 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 046677 78 LNDQIRSEIQHMKTVLGE 95 (202)
Q Consensus 78 LnE~Lk~EvqrLK~~~ge 95 (202)
-|+.|..||.|||..+++
T Consensus 16 ~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 16 KNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred hhhhHHHHHHHHHHHHhc
Confidence 355666788888887753
No 67
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=70.03 E-value=7.6 Score=27.69 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=11.4
Q ss_pred HHHHhhHhhHHHHHHHHHHHH
Q 046677 46 LLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 46 lLq~~~~~L~sEN~eLK~RLq 66 (202)
.|+.....|..||..|+.+++
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444
No 68
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=69.71 E-value=11 Score=27.65 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 35 SNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 35 ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
.||..|..+|..++.+...|..||..|+.
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999975
No 69
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=69.69 E-value=64 Score=29.12 Aligned_cols=90 Identities=10% Similarity=0.058 Sum_probs=45.8
Q ss_pred hhhHHhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HhhHHHHHHHHHHHHHHH
Q 046677 3 HRIVANRMSAIRAKERK-----KLYIYMLEHKMHNLRSNSTTLTAQLTLLETES--------NSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 3 KRiLaNReSAqRSReRK-----kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~--------~~L~sEN~eLK~RLqsLe 69 (202)
|.|..|-+..+.+-.++ ...+.+|..+-..+..+...|.++...+.++. ..|..+-++|+.++..+
T Consensus 5 ~~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~- 83 (421)
T 1ses_A 5 KRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRL- 83 (421)
T ss_dssp HHHHHCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhCHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH-
Confidence 34445555555544444 35555666666666666666655555555443 23444444444444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 70 QKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 70 qq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
+..-..+.+++..+-..+|-+|..
T Consensus 84 ------~~~~~~~~~~~~~~~~~ipN~~~~ 107 (421)
T 1ses_A 84 ------EEALREKEARLEALLLQVPLPPWP 107 (421)
T ss_dssp ------HHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred ------HHHHHHHHHHHHHHHHhCCCCCCC
Confidence 333444556665555555555444
No 70
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=69.22 E-value=11 Score=27.07 Aligned_cols=27 Identities=22% Similarity=0.112 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTL 46 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~Lsaqltl 46 (202)
..||..|+.+...|..+...|..++..
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~ 72 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRH 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777776666665555444433
No 71
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.02 E-value=49 Score=27.52 Aligned_cols=8 Identities=25% Similarity=0.331 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 046677 82 IRSEIQHM 89 (202)
Q Consensus 82 Lk~EvqrL 89 (202)
+.+|+..|
T Consensus 155 ~~~e~~~l 162 (256)
T 3na7_A 155 IKETQQII 162 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 72
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.85 E-value=9 Score=25.77 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=12.5
Q ss_pred hhHhhHHHHHHHHHHHHHH
Q 046677 50 ESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 50 ~~~~L~sEN~eLK~RLqsL 68 (202)
+...|..||.+||.++..+
T Consensus 20 d~eaLk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAI 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4556677777777766655
No 73
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=68.48 E-value=17 Score=24.52 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 046677 27 EHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61 (202)
Q Consensus 27 E~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eL 61 (202)
|.++..|..-|..|..+++.|+..++.++-|+--|
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 56677777777777777777777776666555444
No 74
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=67.87 E-value=6.1 Score=26.79 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=15.8
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 42 AQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 42 aqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
..+..|+.....|..+|..|+.++..|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666655444
No 75
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=67.44 E-value=42 Score=26.11 Aligned_cols=7 Identities=0% Similarity=0.368 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 046677 79 NDQIRSE 85 (202)
Q Consensus 79 nE~Lk~E 85 (202)
++.|+..
T Consensus 95 e~~L~e~ 101 (155)
T 2oto_A 95 EKELEEK 101 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 76
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=67.28 E-value=28 Score=25.02 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
++..+++.++.+|..|..+|..++.+...-..+-..++..+..+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888777766666666666555443
No 77
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=67.22 E-value=5.2 Score=26.46 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQL 44 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~Lsaql 44 (202)
..|+++||.+|..|+.....|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999888887654
No 78
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=67.19 E-value=23 Score=29.83 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKI 72 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~ 72 (202)
++.-+.-|+.|+.||..|+.++.. ...|+..|+.++++++.+.
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~-------k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDT-------KATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Confidence 334445577777777777777664 4445555555555555444
No 79
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=67.06 E-value=23 Score=26.09 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHL 74 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~L 74 (202)
..||..|..++..+..+. .....|...|..|..|++.||-+++.
T Consensus 38 vdYI~~Lq~e~~r~~e~e-----------~r~k~le~~n~~l~~riqELE~qa~~ 81 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLE-----------NRQKKLEHANRHLLLRVQELEMQARA 81 (83)
T ss_dssp HHHHHHHHHTHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 567777766555444433 33456888999999999999988764
No 80
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=66.96 E-value=8 Score=24.31 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 046677 78 LNDQIRSEIQHMKTVLGE 95 (202)
Q Consensus 78 LnE~Lk~EvqrLK~~~ge 95 (202)
-|..|..||.|||..+++
T Consensus 15 ~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 15 KNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHhhc
Confidence 355566688888887753
No 81
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=66.94 E-value=14 Score=31.65 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 35 SNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 35 ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
.||..|...|..++.+...|..||.+||.
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888999998888888888888888876
No 82
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=66.91 E-value=6.2 Score=29.01 Aligned_cols=24 Identities=29% Similarity=0.185 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQ 43 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~Lsaq 43 (202)
+..|.||+.++..|+.||+-|+.-
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345888888888888888887653
No 83
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=66.19 E-value=19 Score=24.61 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 41 TAQLTLLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 41 saqltlLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
..++..|......|..+|.+|+.++..++.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777766543
No 84
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=66.13 E-value=43 Score=25.77 Aligned_cols=48 Identities=21% Similarity=0.188 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 24 YMLEHKMHNLRSNSTTLT-----------AQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~Ls-----------aqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
.+|..++..|..|+.+++ ..++.|+.+...|..+|..|+.+|-.||+.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555554443 345667777778888888888777777653
No 85
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=65.76 E-value=2.9 Score=32.06 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHHHHHHHhHHH
Q 046677 51 SNSLDAEKAVLKHRLEITLQKIH 73 (202)
Q Consensus 51 ~~~L~sEN~eLK~RLqsLeqq~~ 73 (202)
...|..+|..|..|++.||.+++
T Consensus 93 ~~~l~~~n~~L~~riqeLE~~a~ 115 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQELEMQAR 115 (118)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888888887665
No 86
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=65.12 E-value=15 Score=26.68 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 046677 53 SLDAEKAVLKHRLEIT 68 (202)
Q Consensus 53 ~L~sEN~eLK~RLqsL 68 (202)
.|..+|..|+.+|+.|
T Consensus 70 ~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 70 LLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445556666655544
No 87
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.69 E-value=25 Score=31.65 Aligned_cols=53 Identities=13% Similarity=0.267 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 32 NLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 32 ~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
.|..+...|..++..++++...+..++.+++.++..- +.+-..|..+++.||.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE-------ETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCC
Confidence 3333344444444444444445555556665544333 2333344455555553
No 88
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=64.64 E-value=92 Score=29.06 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------hhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046677 27 EHKMHNLRSNSTTLTAQLTLLET-----------ESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGE 95 (202)
Q Consensus 27 E~kVq~LQ~ENa~LsaqltlLq~-----------~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ge 95 (202)
..++..|+.+...++.+|..+.. +...|..+-++|+.++..+ +..-..+.+++..+-..+|-
T Consensus 83 ~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l-------~~~~~~~~~~l~~~l~~iPN 155 (501)
T 1wle_A 83 REQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLL-------YPKEAQLEEQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCC
Confidence 34455555555555555554432 2224444444555544444 33344556666666666665
Q ss_pred cCCC
Q 046677 96 KIPN 99 (202)
Q Consensus 96 i~~~ 99 (202)
+|..
T Consensus 156 ~~~~ 159 (501)
T 1wle_A 156 QTHP 159 (501)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 5544
No 89
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=63.90 E-value=63 Score=26.89 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
+..|+..+..|...+..|...|..|+..++.|....+..-.-++.++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e 136 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFE 136 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Confidence 56667777777777777777777777777777766666655554443
No 90
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=63.46 E-value=10 Score=28.10 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 35 SNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 35 ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
.||..|...|..++.+...|..+|.+||.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777777777777765
No 91
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=63.26 E-value=42 Score=24.69 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
+..|+.++..|..+-+.|..++..+..+...+..+-..+......+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777777776666666655444
No 92
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=63.07 E-value=9.1 Score=33.42 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQL 44 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~Lsaql 44 (202)
..++..+|..|+.|.+.|..++
T Consensus 19 ~~~~~~~~~~~~~e~~~l~~~~ 40 (251)
T 3m9b_A 19 SSGDAAELEQLRREAAVLREQL 40 (251)
T ss_dssp ----------------------
T ss_pred cccchHHHHHHHHHHHHHHHhh
Confidence 4556666666766666555444
No 93
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=63.01 E-value=12 Score=23.56 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhcc
Q 046677 79 NDQIRSEIQHMKTVLGE 95 (202)
Q Consensus 79 nE~Lk~EvqrLK~~~ge 95 (202)
+..|..||.|||..+|+
T Consensus 17 ~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 17 LYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 55566788999888764
No 94
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=62.84 E-value=35 Score=26.92 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 30 MHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 30 Vq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
|+.|+.|+..|..++.....+...|..+|.+|..|+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 4444455555555555555555566666666666653
No 95
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=62.42 E-value=12 Score=25.70 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=8.7
Q ss_pred HHHHHHhhHhhHHHHHHHHH
Q 046677 44 LTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 44 ltlLq~~~~~L~sEN~eLK~ 63 (202)
+..|+.....|..+|..|+.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 96
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=61.66 E-value=28 Score=35.20 Aligned_cols=10 Identities=0% Similarity=0.272 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 046677 26 LEHKMHNLRS 35 (202)
Q Consensus 26 LE~kVq~LQ~ 35 (202)
|+.++..++.
T Consensus 862 L~~eL~el~~ 871 (1184)
T 1i84_S 862 KDEELQRTKE 871 (1184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 97
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=61.15 E-value=40 Score=32.54 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 046677 17 ERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLK 62 (202)
Q Consensus 17 eRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK 62 (202)
..+-+|-+|||+++..|+.++..-...|..|+.....+..+...|-
T Consensus 106 NtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 106 NTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666665555555555555555544444444443
No 98
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=60.83 E-value=39 Score=26.08 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
-|+.|-++|..|..+...+..+ -++-...|....+.|...|..-....+-.-..++.|+.|+..|+...
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E---~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTE---SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555322 12223334444444444333332222222234666666666554433
No 99
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=60.78 E-value=15 Score=23.11 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhcc
Q 046677 79 NDQIRSEIQHMKTVLGE 95 (202)
Q Consensus 79 nE~Lk~EvqrLK~~~ge 95 (202)
|..|..||.|||..+|+
T Consensus 16 ~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 16 XYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHcc
Confidence 55666788888888764
No 100
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=60.57 E-value=13 Score=32.40 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=21.6
Q ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 44 LTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 44 ltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
+..++.+...|...|..|+..+..+. ...+.|++|+++|+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar-------~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEAR-------QQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHH-------HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcC
Confidence 44444555555555555554443332 233456778888775
No 101
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.55 E-value=29 Score=31.52 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 30 MHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 30 Vq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
...|+.|..++..++..+.++...+..|+.+++.++-
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666667777777777777776553
No 102
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=60.25 E-value=28 Score=30.27 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
-|.|+..||..|..-...+..+|+.++++=..|..+...++.|+..++.
T Consensus 178 EI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 178 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777777777777777777777666554
No 103
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=60.02 E-value=1e+02 Score=28.13 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 27 EHKMHNLRSNSTTLTAQLTLLETE---SNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 27 E~kVq~LQ~ENa~LsaqltlLq~~---~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
..++..|+.+...++.+|..+... ...|..+-++|+.++..++ ..-..+.+++..+-..+|-+|..
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ipN~~~~ 112 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELE-------NEVEELKKKIDYYLWRLPNITHP 112 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCCCCc
Confidence 344445555555555555443221 2345555555555555443 33444566666666666655544
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=58.40 E-value=53 Score=37.56 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMK 90 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK 90 (202)
.+.++...+.+.+++.++++.|+.++.....|...|+..++..+......+.|.+.|..|-.|-.
T Consensus 2026 ~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 34444555666777777888888888888889999999888888877777778777766655433
No 105
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=57.88 E-value=49 Score=23.70 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=16.9
Q ss_pred HhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046677 52 NSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHM 89 (202)
Q Consensus 52 ~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrL 89 (202)
..+..+|.+|+.++..++....=...-.+.++.|+.++
T Consensus 10 q~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555433322222234444444443
No 106
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=57.66 E-value=5.7 Score=26.56 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046677 19 KKLYIYMLEHKMHNLRSNSTTLT 41 (202)
Q Consensus 19 KkqYI~ELE~kVq~LQ~ENa~Ls 41 (202)
+..||.+||.+|..|+.....|.
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999987666553
No 107
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=57.40 E-value=82 Score=26.13 Aligned_cols=49 Identities=4% Similarity=-0.089 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
.-+.+|+.++..+......+...+..+..+...+..+-..++.++...+
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666666665544
No 108
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=57.34 E-value=74 Score=25.60 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHH
Q 046677 77 SLNDQIRSEIQHMKT 91 (202)
Q Consensus 77 aLnE~Lk~EvqrLK~ 91 (202)
+-+..|..||.||+.
T Consensus 140 ~~~~~~~~~~~~~~~ 154 (155)
T 2efr_A 140 SKNYHLENEVARLKK 154 (155)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHhhc
Confidence 445566778888763
No 109
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=57.09 E-value=22 Score=22.45 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLET 49 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~ 49 (202)
+..||.||..|-.++..|..++..|..
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567899999888888888887776543
No 110
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=56.49 E-value=58 Score=32.98 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 046677 26 LEHKMHNLRSN 36 (202)
Q Consensus 26 LE~kVq~LQ~E 36 (202)
|+.++..|+.+
T Consensus 883 le~~l~~Le~e 893 (1184)
T 1i84_S 883 LEQKHTQLCEE 893 (1184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 111
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=55.90 E-value=16 Score=24.52 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=16.6
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 43 QLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 43 qltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
-+..|+.....|..||..|+.++..+.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566666667777766665554
No 112
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=54.49 E-value=67 Score=24.25 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
|.+|-+.|+.|+.|...+......|+
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE 63 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQ 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44555555555555444444444443
No 113
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.45 E-value=72 Score=24.57 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 16 KERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 16 ReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
+..-..||.+|+..|..|+.|...-+.... ....||..|+..++.
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q-------~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQ-------QAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 334455666666666666665555444333 334444444444443
No 114
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=54.01 E-value=68 Score=24.19 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 34 RSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 34 Q~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
+.+...|+.+|..+..++..|..|-.-++.-++.+....----+....+..++.+||.++.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 3444555555555555555555554444443333321111111223344566677776663
No 115
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=53.24 E-value=18 Score=22.82 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhcc
Q 046677 79 NDQIRSEIQHMKTVLGE 95 (202)
Q Consensus 79 nE~Lk~EvqrLK~~~ge 95 (202)
|..|..||.|||.++|+
T Consensus 17 ~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 17 NYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 55667788899888764
No 116
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=53.13 E-value=18 Score=22.83 Aligned_cols=17 Identities=35% Similarity=0.653 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhcc
Q 046677 79 NDQIRSEIQHMKTVLGE 95 (202)
Q Consensus 79 nE~Lk~EvqrLK~~~ge 95 (202)
+..|..||.|||..+|+
T Consensus 17 ~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 17 GHHICNELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 55566788888887764
No 117
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=53.09 E-value=29 Score=27.65 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH----hhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLETESN----SLDAEKAVLKHRLEITLQKIHLQDSLND 80 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~----~L~sEN~eLK~RLqsLeqq~~LkdaLnE 80 (202)
++-+.....|+.....++.++..+..+.. .+...|..|+...++|+....+-..-.+
T Consensus 19 ~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~ 79 (130)
T 3cl3_D 19 EAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAAS 79 (130)
T ss_dssp --------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555444432 2566777777777777766665544433
No 118
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=52.93 E-value=7.7 Score=30.19 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLT 45 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~Lsaqlt 45 (202)
++||..++..|+.||..|+.++.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999988875
No 119
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=52.89 E-value=25 Score=22.07 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhcc
Q 046677 79 NDQIRSEIQHMKTVLGE 95 (202)
Q Consensus 79 nE~Lk~EvqrLK~~~ge 95 (202)
+..|..||.||+..+|+
T Consensus 16 ~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 16 IYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 45566788999888874
No 120
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=52.84 E-value=22 Score=22.35 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=11.6
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 42 AQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 42 aqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
.++...+.+.+.|...|..|..++-
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 3444444444444455555544443
No 121
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=51.39 E-value=18 Score=25.39 Aligned_cols=20 Identities=15% Similarity=0.403 Sum_probs=8.3
Q ss_pred HHHhhHhhHHHHHHHHHHHH
Q 046677 47 LETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 47 Lq~~~~~L~sEN~eLK~RLq 66 (202)
+..+...|..+|..|+.+|.
T Consensus 59 l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 59 HQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 122
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=50.87 E-value=17 Score=24.44 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLT 45 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~Lsaqlt 45 (202)
|++++...+..|..||..|..++.
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 123
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=50.70 E-value=67 Score=23.12 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 37 STTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 37 Na~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
...|+.+|..+..++..|..|-.-++.-+..+....----+....+..|+..||.++.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 59 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3456667776666666666666665554444322211111223344566677776554
No 124
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.66 E-value=1.6e+02 Score=27.49 Aligned_cols=65 Identities=9% Similarity=0.143 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 28 HKMHNLRSNSTTLTAQLTLLET---ESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 28 ~kVq~LQ~ENa~LsaqltlLq~---~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
.++..|+.+...++.+|..+.. +...|..+-++|+.++..++ ..-..+.+++..+-..+|-+|..
T Consensus 47 ~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le-------~~~~~~~~~~~~~l~~iPN~~~~ 114 (485)
T 3qne_A 47 FDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEII-------EKEAEADKNLRSKINQVGNIVHE 114 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCCCCc
Confidence 3444444444444554444332 23345556666666555553 33334456666666666655544
No 125
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.17 E-value=1e+02 Score=24.94 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQ 43 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~Lsaq 43 (202)
+..+||.++..+..+......+
T Consensus 14 ~qs~LeD~L~~~R~el~~~~~r 35 (154)
T 2ocy_A 14 KQSHLEEQLNKSLKTIASQKAA 35 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443333
No 126
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=50.11 E-value=9.9 Score=32.24 Aligned_cols=40 Identities=28% Similarity=0.169 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 046677 54 LDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKI 97 (202)
Q Consensus 54 L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~ 97 (202)
+..||.+||.++..++... ...+.|+.|-.+||..++...
T Consensus 24 l~~eN~~Lk~e~~~l~~~~----~~~~~l~~En~rLr~lL~~~~ 63 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLE----SEVADLKKENKDLKESLDITD 63 (255)
T ss_dssp --CTTTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCcc
Confidence 4445555555444443222 334567778889999886543
No 127
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=50.06 E-value=42 Score=23.32 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 046677 27 EHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61 (202)
Q Consensus 27 E~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eL 61 (202)
|++|..|..-|-+|..++..|+..|....-|+.-|
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666665555555444
No 128
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=49.99 E-value=58 Score=22.22 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 19 KKLYIYMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 19 KkqYI~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
|-+-+.+||.++..+++-.+.+..++..+.
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~ 33 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASH 33 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 456788999999998887776555544433
No 129
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=49.95 E-value=74 Score=23.37 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
......++.++..++..+..+-.+|..|++.+..+..+-..+..+|.
T Consensus 22 ~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 22 LDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555444444443
No 130
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=49.70 E-value=71 Score=23.13 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAV 60 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~e 60 (202)
+.+|-.++..|+.|+..|..++..+..+...+....++
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444444444333333
No 131
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=49.31 E-value=37 Score=24.55 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
.-|.|+..|+..|..-...+..+++.++++-..|..+-..++.||+.+
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~ 68 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888888777777777777766554
No 132
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=48.31 E-value=79 Score=23.22 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEI 86 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Ev 86 (202)
-+.+++.+...++.++.+|..++..++.+.......-...+..|..-+...--.++-..+|..-|
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666655555555555555544444444444444443
No 133
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=48.23 E-value=72 Score=24.40 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 046677 82 IRSEIQHMK 90 (202)
Q Consensus 82 Lk~EvqrLK 90 (202)
|+.++.-|+
T Consensus 70 L~~~~~~lk 78 (103)
T 4h22_A 70 LQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 134
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=47.87 E-value=78 Score=23.05 Aligned_cols=49 Identities=8% Similarity=-0.011 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
......++.++..++..+..+...|..|++.+..+..+-..+..++...
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666655555554444433
No 135
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.72 E-value=1.1e+02 Score=24.70 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=27.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 61 LKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 61 LK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
+..|...++.+..=++.+-+.+..++..||.++..+.+.
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~~e 151 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLDNE 151 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445555555566666788888999999999998766543
No 136
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.05 E-value=58 Score=23.41 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 60 VLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 60 eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
....++..++....-+|++...|+.|+..++.++
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3334455566666666777777777777776544
No 137
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.75 E-value=26 Score=23.78 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLD 55 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~ 55 (202)
+--..||.-|..|++.|+.|..-|.-|+.+...|.
T Consensus 17 kenaklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 33456777788888888888777777777665554
No 138
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=45.92 E-value=71 Score=28.83 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=24.4
Q ss_pred HhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677 52 NSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99 (202)
Q Consensus 52 ~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~ 99 (202)
..|..+-++|+.++..++ ..-..+.+++..+-..+|-+|..
T Consensus 71 ~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ipN~~~~ 111 (425)
T 2dq3_A 71 TEIQNRVKELKEEIDRLE-------EELRKVEEELKNTLLWIPNLPHP 111 (425)
T ss_dssp TTSTTHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCCCCC
Confidence 345556666666665553 33445566777777777766654
No 139
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.34 E-value=21 Score=25.04 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNL 33 (202)
Q Consensus 22 YI~ELE~kVq~L 33 (202)
||..|+.++..|
T Consensus 58 YI~~L~~~~~~L 69 (80)
T 1hlo_A 58 YIQYMRRKNHTH 69 (80)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 140
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=44.58 E-value=72 Score=22.67 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTL 46 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~Lsaqltl 46 (202)
+-++.|+.+|..|+.+...|..+++.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45889999999999999999988863
No 141
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=44.29 E-value=1e+02 Score=26.96 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTL 46 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~Lsaqltl 46 (202)
.+...|.+++..++.--..+.++-..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAAT 422 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhh
Confidence 34444555555444444444444333
No 142
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.05 E-value=1e+02 Score=23.33 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
|.+|-+.|+.|+.|...+......|+
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE 65 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLE 65 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44445555555544444444443333
No 143
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=43.88 E-value=71 Score=21.47 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 046677 30 MHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 30 Vq~LQ~ENa~LsaqltlLq~~~ 51 (202)
|..|-++...|+.++..|..+.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV 27 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDA 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333
No 144
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.34 E-value=1e+02 Score=23.20 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
.-+..|+.++.....+...|...++.-.........++..+-..|+.|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888887777777777777777777766655
No 145
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=43.27 E-value=1e+02 Score=28.77 Aligned_cols=24 Identities=0% Similarity=-0.027 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcc
Q 046677 79 NDQIRSEIQHMKTVLGEKIPNLGA 102 (202)
Q Consensus 79 nE~Lk~EvqrLK~~~gei~~~~g~ 102 (202)
.+.+++=-..|...+-.||+....
T Consensus 91 e~~~~~~~~~~~~~l~~iPN~~~~ 114 (485)
T 3qne_A 91 IEKEAEADKNLRSKINQVGNIVHE 114 (485)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCc
Confidence 333333334566667777766643
No 146
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.39 E-value=76 Score=21.35 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=19.0
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 42 AQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 42 aqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
..+..|+.+...|..+|..|+..+..|
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777778888888887766444
No 147
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=41.81 E-value=1.1e+02 Score=23.09 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTL 46 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~Lsaqltl 46 (202)
+-....|.+|..|+.++.+|...+..
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666555543
No 148
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=41.44 E-value=1.1e+02 Score=23.00 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=29.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHh
Q 046677 7 ANRMSAIRAKERKKLYIYMLEHKMHNLR---SNSTTLTAQLTLLETESNS 53 (202)
Q Consensus 7 aNReSAqRSReRKkqYI~ELE~kVq~LQ---~ENa~LsaqltlLq~~~~~ 53 (202)
.+-.+|-.+=..|..-|++|-.++.... ..+.-|.+++..+..++.+
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~a 58 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 58 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666667777777777666666 4555556666666655544
No 149
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.21 E-value=51 Score=24.12 Aligned_cols=46 Identities=28% Similarity=0.298 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 26 LEHKMHNLRSNSTTLTAQLT-------LLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 26 LE~kVq~LQ~ENa~Lsaqlt-------lLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
.-++|..|-.||+.|...-. .|=...+.|+.|+..|+..+.++.+.
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~ 59 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44566777777777644322 22344556677777777766666443
No 150
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=41.15 E-value=38 Score=24.07 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=8.7
Q ss_pred HHHHhhHhhHHHHHHHHHHH
Q 046677 46 LLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 46 lLq~~~~~L~sEN~eLK~RL 65 (202)
.+..+...|..+|.+|+.+|
T Consensus 58 ~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 58 KAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444
No 151
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=40.75 E-value=1e+02 Score=22.39 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
+++.+...+..+...|..++..++.+.......-......|.
T Consensus 34 ~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe 75 (101)
T 3u59_A 34 QAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLE 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333333333333
No 152
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=40.63 E-value=91 Score=21.73 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=16.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHH
Q 046677 6 VANRMSAIRAKERKKLYIYML 26 (202)
Q Consensus 6 LaNReSAqRSReRKkqYI~EL 26 (202)
-+||..++++|.|=+..++-.
T Consensus 7 yknr~asrk~rakfkn~lqh~ 27 (63)
T 2c9l_Y 7 YKNRVAARKSRAKFKQLLQHY 27 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 489999999998876655443
No 153
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=40.53 E-value=1.1e+02 Score=22.56 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046677 32 NLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSE 85 (202)
Q Consensus 32 ~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~E 85 (202)
.|--|...|+-+++.++.+...-.-.-+.-|..|.++..+.-.+|+-.+.|..+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444444444444444444444444555666666666666544444444
No 154
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=40.32 E-value=29 Score=21.11 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=10.3
Q ss_pred HhhHHHHHHHHHHHHHH
Q 046677 52 NSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 52 ~~L~sEN~eLK~RLqsL 68 (202)
..|.+||+.||.+++.+
T Consensus 9 asleaenkqlkakveel 25 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666677666665443
No 155
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=40.31 E-value=11 Score=27.38 Aligned_cols=13 Identities=54% Similarity=1.170 Sum_probs=10.7
Q ss_pred HHHhhcCCCCCCh
Q 046677 170 QLLYQENPPPHDH 182 (202)
Q Consensus 170 ~~~~~~~~~~~~~ 182 (202)
.+||++||+|..-
T Consensus 22 kiLyQSNP~P~p~ 34 (72)
T 3lph_A 22 KFLYQSNPPPNPE 34 (72)
T ss_dssp HHHHHTCCCCCCC
T ss_pred HHHHccCCCCCCC
Confidence 5899999998753
No 156
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=40.08 E-value=92 Score=26.49 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHH
Q 046677 30 MHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKI 72 (202)
Q Consensus 30 Vq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~ 72 (202)
++.|+.+-.+.-.+-..|+.....+.+||+.||.++..++...
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 3445555555555555666666677888888888777776543
No 157
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=39.98 E-value=1.1e+02 Score=22.51 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=23.0
Q ss_pred HhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 49 TESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 49 ~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
++..+|.-|-+.||.|+..|+.+..--+-=-.+.++|+..|+.
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~ 61 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQE 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4455677777777777777665544333323333444444433
No 158
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=39.29 E-value=1e+02 Score=22.04 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHR 64 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~R 64 (202)
.+..++.++..+.............|...+..|..+.+.|-..
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444455555555544443
No 159
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.93 E-value=1.2e+02 Score=22.76 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677 35 SNSTTLTAQLTLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 35 ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq 66 (202)
.|...+...|..|+-+..++.+.|..|-..|.
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444444444444433333
No 160
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=38.55 E-value=29 Score=23.23 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=17.5
Q ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 44 LTLLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 44 ltlLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
+..+-.+...|..||.+|+.++..++.
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556777788888888887776653
No 161
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.01 E-value=1.1e+02 Score=21.81 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLL 47 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlL 47 (202)
+||.++..|+...+-....|..|
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeL 33 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTEL 33 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444444333
No 162
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.66 E-value=1.6e+02 Score=33.78 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHH
Q 046677 16 KERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLND---QIRSEIQHMKTV 92 (202)
Q Consensus 16 ReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE---~Lk~EvqrLK~~ 92 (202)
-...++.+.+.+.++..++.+.+.|.++.+....+...|..+-...+.+|..- ..|.++|.. .=++.+..|+..
T Consensus 2023 l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA---~~Li~gL~~Ek~RW~~~~~~l~~~ 2099 (3245)
T 3vkg_A 2023 ANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS---IALLDNLNSERGRWEQQSENFNTQ 2099 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhccccHHHHHHHHHHH
Confidence 34455666777777777777777777777777778888888777777766544 334444433 335566666554
Q ss_pred hccc
Q 046677 93 LGEK 96 (202)
Q Consensus 93 ~gei 96 (202)
...+
T Consensus 2100 ~~~L 2103 (3245)
T 3vkg_A 2100 MSTV 2103 (3245)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 4433
No 163
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=36.73 E-value=1.2e+02 Score=22.05 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 33 LRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 33 LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
|-.--+..-.+|..|+.++..|.++-..++.+ . ...+......+|..||..+.
T Consensus 14 LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~-------~--~~~~~~~ye~~i~~Lr~~i~ 66 (93)
T 3s4r_A 14 LNDRFANLIDKVRFLEQQNKILLAELEQLKGQ-------G--KSRLGDLYEEEMRELRRQVD 66 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------c--CCCcHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555544444432 1 11233344556666665554
No 164
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=36.46 E-value=1.5e+02 Score=22.94 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Q 046677 8 NRMSAIRAKERKKLYIYMLEHKMHNLRS---NSTTLTAQLTLLETES 51 (202)
Q Consensus 8 NReSAqRSReRKkqYI~ELE~kVq~LQ~---ENa~LsaqltlLq~~~ 51 (202)
|=.+|-.+=..|+.-|++|..++..+.. .+.-|.+++..+..++
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 78 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666655554 3344444444444443
No 165
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.17 E-value=1.8e+02 Score=27.01 Aligned_cols=60 Identities=20% Similarity=0.094 Sum_probs=27.2
Q ss_pred hhhHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 046677 3 HRIVANRMSAIRA-KERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLK 62 (202)
Q Consensus 3 KRiLaNReSAqRS-ReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK 62 (202)
|-|..|.+..+++ +.|+..--.++-.+|-.|-.+..++..++..|+.+...+..+-..+|
T Consensus 44 ~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 44 ESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666664333 33331100111234445555555555555555555555555544443
No 166
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.42 E-value=22 Score=21.24 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 046677 33 LRSNSTTLTAQL 44 (202)
Q Consensus 33 LQ~ENa~Lsaql 44 (202)
|+.||..|..+|
T Consensus 5 lefendaleqki 16 (28)
T 3ra3_A 5 LEFENDALEQKI 16 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhccHHHHHHH
Confidence 333444433333
No 167
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=35.16 E-value=43 Score=22.48 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046677 19 KKLYIYMLEHKMHNLRSNSTTLT 41 (202)
Q Consensus 19 KkqYI~ELE~kVq~LQ~ENa~Ls 41 (202)
+..|+..|+.+|..|+.....|.
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 55899999999999988766553
No 168
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=35.06 E-value=45 Score=24.10 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
|..+...+...+.-+..=+..-+..+..|+..|+.||.
T Consensus 20 l~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~ 57 (71)
T 3bbp_D 20 LVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKS 57 (71)
T ss_dssp ---------CTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 33333333333333433333333344444444444443
No 169
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.70 E-value=55 Score=26.04 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 33 LRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 33 LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
...+...|...++.-.........++..+-..|+.
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~ 78 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 78 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333333333333344444444433
No 170
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=34.51 E-value=1.2e+02 Score=21.34 Aligned_cols=10 Identities=20% Similarity=0.587 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 046677 29 KMHNLRSNST 38 (202)
Q Consensus 29 kVq~LQ~ENa 38 (202)
+++.|++||+
T Consensus 49 ~lq~LQsen~ 58 (63)
T 2w6a_A 49 EIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 3333333333
No 171
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=34.44 E-value=2.9e+02 Score=25.77 Aligned_cols=14 Identities=7% Similarity=0.256 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSN 36 (202)
Q Consensus 23 I~ELE~kVq~LQ~E 36 (202)
|.+|+..|..|...
T Consensus 102 LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 102 LRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 66666666666543
No 172
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=33.64 E-value=1.9e+02 Score=23.44 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
.|||..+..--+-...|...|..|.
T Consensus 101 rELEADLKEKDsMVe~LT~TiG~Lr 125 (167)
T 4gkw_A 101 GELEADLKEKDSMVESLTETIGILR 125 (167)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHHHHHHHHHHH
Confidence 3455444444444444444444443
No 173
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.63 E-value=71 Score=23.60 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 55 DAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 55 ~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
-.||..|..++..++ -.+..|++|...||.++.
T Consensus 45 L~EN~~Lh~~ie~l~-------eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 45 LKENEKLHKEIEQKD-------NEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 458999988887764 344566677777776654
No 174
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=33.34 E-value=22 Score=30.09 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 046677 34 RSNSTTLTAQLTLL 47 (202)
Q Consensus 34 Q~ENa~LsaqltlL 47 (202)
..||..|+.++..|
T Consensus 25 ~~eN~~Lk~e~~~l 38 (255)
T 2j5u_A 25 YTENQHLKERLEEL 38 (255)
T ss_dssp -CTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 175
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.46 E-value=1.7e+02 Score=26.15 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 24 YMLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 24 ~ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
.+|+.++..|+.+...+..++..+.
T Consensus 13 ~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 13 AALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 176
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=32.40 E-value=1.3e+02 Score=27.15 Aligned_cols=57 Identities=11% Similarity=0.183 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 35 SNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 35 ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
+|..+|..++..+.+....|..++..++..+..+..+..-.+.....|..++..||-
T Consensus 3 ~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 3 SMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456778888888888888888888888887777776655555555556666665553
No 177
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=32.12 E-value=45 Score=20.57 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
-||..|..|++-..+|..+++.|+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666665554
No 178
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.04 E-value=1.1e+02 Score=20.34 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 32 NLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 32 ~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
.|+.++..|++++..|..-...-..+-..|+..+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 179
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=32.01 E-value=24 Score=28.66 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=16.1
Q ss_pred HhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046677 49 TESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGE 95 (202)
Q Consensus 49 ~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ge 95 (202)
.+...+.++..+|...++.++.+.++.|+...-|+.+++..|.+...
T Consensus 87 a~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKq 133 (146)
T 2xnx_M 87 LELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQ 133 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTTTC--------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666667777777777766666666655555443
No 180
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=31.72 E-value=2e+02 Score=26.22 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=47.9
Q ss_pred hhhHHhhhhHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHH---H-HHHHhHHHHHH
Q 046677 3 HRIVANRMSAIRAKERKKLY-I-YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHR---L-EITLQKIHLQD 76 (202)
Q Consensus 3 KRiLaNReSAqRSReRKkqY-I-~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~R---L-qsLeqq~~Lkd 76 (202)
|.|..|.+..+.+-.++- + - .++-.+|-.|-.+-.++..++..|+.+...+..+-..+|.. . +.++.-..+++
T Consensus 5 ~~~r~n~~~~~~~~~~R~-~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~ 83 (455)
T 2dq0_A 5 KLIRENPELVKNDLIKRG-ELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVK 83 (455)
T ss_dssp HHHHHCHHHHHHHHHHHT-CGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHhC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 445566666665554442 2 1 23335555555556666666666665555555554443321 0 11111222222
Q ss_pred ---HHHHHHHHHHHHHHHHhcccCCCCcc
Q 046677 77 ---SLNDQIRSEIQHMKTVLGEKIPNLGA 102 (202)
Q Consensus 77 ---aLnE~Lk~EvqrLK~~~gei~~~~g~ 102 (202)
.+.+.+++=-..|...+-.+|+....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ipN~~~~ 112 (455)
T 2dq0_A 84 RIGELENEVEELKKKIDYYLWRLPNITHP 112 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 33444444444566666677766643
No 181
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.55 E-value=2.3e+02 Score=23.72 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
-|..|..++..|..+......+|..|+++...+...-...+.++
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 35566666666666666666666666655555555444444433
No 182
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=30.11 E-value=1.2e+02 Score=20.04 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 10 MSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTA 42 (202)
Q Consensus 10 eSAqRSReRKkqYI~ELE~kVq~LQ~ENa~Lsa 42 (202)
+.|-||=.+-.+-|++||.++..-...+..++.
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~ 40 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISE 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444444444444444443333333333
No 183
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=30.10 E-value=1.2e+02 Score=20.18 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDA 56 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~s 56 (202)
++..++..|+.+...++..++..-+++..|..
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~Lln 35 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLN 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666555555555544443
No 184
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.12 E-value=1.5e+02 Score=27.48 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL 65 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL 65 (202)
+|.+|||.++..|+..+..--..|..|+.....+.++-..|-..|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666655555444444455555555444444444443333
No 185
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=28.92 E-value=1.1e+02 Score=19.12 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 38 TTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 38 a~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
+.|+++++.|.+++.+|+-.-+.||.++.++
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666666666666666666655544
No 186
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.80 E-value=88 Score=28.37 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677 30 MHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 30 Vq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~ 91 (202)
...+...+..|..++..|+++...|..|+..|+..+..+.. ..+.+++|+.+|+.
T Consensus 37 ~~~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~-------e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 37 NSALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKR-------ELKRAQEEVKRIQS 91 (428)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTC
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcC
Confidence 34566667788888888888888888888888876554432 22345677777764
No 187
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=28.76 E-value=1.2e+02 Score=23.30 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677 39 TLTAQLTLLETESNSLDAEKAVLKHRLEITLQK 71 (202)
Q Consensus 39 ~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq 71 (202)
.+..+++....+...|..+..+||..++.++.+
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555557777888888888888755
No 188
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=28.44 E-value=1.8e+02 Score=21.44 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq 48 (202)
.|+.+|..|+.+...|..++..+.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444443
No 189
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=28.17 E-value=1.9e+02 Score=21.64 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 11 SAIRAKERKKLYIYMLEHKMHNLR 34 (202)
Q Consensus 11 SAqRSReRKkqYI~ELE~kVq~LQ 34 (202)
+++.+..=.-..+.+|+.+|..+.
T Consensus 19 ~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 19 MARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666677777777654
No 190
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.07 E-value=1.7e+02 Score=21.09 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 37 STTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 37 Na~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
...|..+|..++.+...|...+-++.-.+..+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34445555555555555555444444444333
No 191
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=27.81 E-value=2.3e+02 Score=22.63 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 046677 56 AEKAVLKHRLEIT 68 (202)
Q Consensus 56 sEN~eLK~RLqsL 68 (202)
.+-+.|+.++...
T Consensus 77 eqIk~L~~kLKEA 89 (155)
T 2efr_A 77 EEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333343333333
No 192
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.00 E-value=64 Score=19.21 Aligned_cols=8 Identities=13% Similarity=0.405 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 046677 37 STTLTAQL 44 (202)
Q Consensus 37 Na~Lsaql 44 (202)
|+.|+.+|
T Consensus 9 narlkqei 16 (28)
T 3ra3_B 9 NARLKQEI 16 (28)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 33333333
No 193
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.96 E-value=2.1e+02 Score=25.35 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 046677 27 EHKMHNLRSNSTTLTA 42 (202)
Q Consensus 27 E~kVq~LQ~ENa~Lsa 42 (202)
|..|.....+...|..
T Consensus 18 e~~i~~~~~~i~~L~~ 33 (323)
T 1lwu_C 18 EQIGVSHDAQIQELSE 33 (323)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHHHHHHHH
Confidence 3333333333333333
No 194
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=26.79 E-value=2.7e+02 Score=25.90 Aligned_cols=58 Identities=5% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hhHhh----HHH-HHHHHHHHHHHHhHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLTLLET---------------------------ESNSL----DAE-KAVLKHRLEITLQKI 72 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~LsaqltlLq~---------------------------~~~~L----~sE-N~eLK~RLqsLeqq~ 72 (202)
++..++..|+.+...++.+|..+.. +...| ..+ -++||.++..++...
T Consensus 48 ~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~~~ 127 (484)
T 3lss_A 48 RTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEA 127 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-HHHHHHHHH
Q 046677 73 H-LQDSLNDQI 82 (202)
Q Consensus 73 ~-LkdaLnE~L 82 (202)
. +.+.+++.|
T Consensus 128 ~~~~~~~~~~l 138 (484)
T 3lss_A 128 QQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 195
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=26.74 E-value=92 Score=18.37 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQL 44 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~Lsaql 44 (202)
.|..+|..|.-|...|+.++
T Consensus 4 qlkdevgelkgevralkdev 23 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHH
Confidence 34444444444444444333
No 196
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=25.39 E-value=93 Score=27.04 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHH
Q 046677 29 KMHNLRSNSTTLTAQLTLLETESNSLDA 56 (202)
Q Consensus 29 kVq~LQ~ENa~LsaqltlLq~~~~~L~s 56 (202)
++..|+.++..|.++++.|+.....+..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5555555555555555555554444443
No 197
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=24.24 E-value=1.6e+02 Score=19.46 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046677 25 MLEHKMHNLRSNSTTLTAQLT 45 (202)
Q Consensus 25 ELE~kVq~LQ~ENa~Lsaqlt 45 (202)
.-|+.|..|+.+...|..++.
T Consensus 9 fAERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666655443
No 198
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.19 E-value=1.7e+02 Score=19.64 Aligned_cols=29 Identities=0% Similarity=0.017 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
|.+|..+|+.|-.....|+..+..+.-+.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666665533
No 199
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=24.02 E-value=1.6e+02 Score=20.44 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=25.5
Q ss_pred HhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046677 49 TESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGE 95 (202)
Q Consensus 49 ~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ge 95 (202)
+....|..-|-.|-.+++-++.++--+| .||.||...+.+
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~e-------QEieRL~~LLkq 50 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKE-------QEIERLNKLLRQ 50 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3445566666667677777766665554 577777776644
No 200
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.97 E-value=1.9e+02 Score=20.25 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 046677 25 MLEHKMHNLR 34 (202)
Q Consensus 25 ELE~kVq~LQ 34 (202)
.|+.++..+.
T Consensus 69 ~L~~~~e~i~ 78 (107)
T 1fxk_A 69 ELQEKLETLQ 78 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 201
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=23.25 E-value=1.3e+02 Score=18.48 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=9.7
Q ss_pred HhhHHHHHHHHHHHHHHHh
Q 046677 52 NSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 52 ~~L~sEN~eLK~RLqsLeq 70 (202)
..|.+.|-..|++++++..
T Consensus 11 qalkarnyaakqkvqalrh 29 (33)
T 1fmh_B 11 QALKARNYAAKQKVQALRH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 3444555555555555544
No 202
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=23.17 E-value=2.6e+02 Score=21.50 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLTAQLTLLE 48 (202)
Q Consensus 26 LE~kVq~LQ~ENa~LsaqltlLq 48 (202)
|+.++..|...|..|..++..+.
T Consensus 55 L~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 55 LEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333
No 203
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.08 E-value=2.4e+02 Score=21.18 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTL 46 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~Lsaqltl 46 (202)
|..|+.++..+...++.|...|..
T Consensus 47 iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444444444444444433
No 204
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=22.83 E-value=43 Score=25.94 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=16.3
Q ss_pred HHHHHhhHhhHHHHHHHHHHHH
Q 046677 45 TLLETESNSLDAEKAVLKHRLE 66 (202)
Q Consensus 45 tlLq~~~~~L~sEN~eLK~RLq 66 (202)
..|..+...|..||+.||.++.
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566678899999999886
No 205
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.81 E-value=1.8e+02 Score=25.85 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHh
Q 046677 33 LRSNSTTLTAQLTLLETESNS 53 (202)
Q Consensus 33 LQ~ENa~LsaqltlLq~~~~~ 53 (202)
|+........+|..|+.....
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~ 37 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRV 37 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHH
Confidence 333333333334433333333
No 206
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.80 E-value=84 Score=21.22 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTA 42 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~Lsa 42 (202)
..|+.+||.+|..|+.....|..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 46999999999999987776643
No 207
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.78 E-value=1.6e+02 Score=18.98 Aligned_cols=32 Identities=6% Similarity=-0.078 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETES 51 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~ 51 (202)
..++.+++.++..+..+-..+...+..+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l 42 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEIFEKL 42 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333333
No 208
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=22.40 E-value=2.4e+02 Score=20.93 Aligned_cols=46 Identities=20% Similarity=0.163 Sum_probs=28.4
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677 46 LLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG 94 (202)
Q Consensus 46 lLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g 94 (202)
.++.+...=.+|-..+|..+-.||..-. .+.+...+||.|||.-+.
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~---kmKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHR---KMKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4444444555555566666655554433 445667789999998774
No 209
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.36 E-value=2.7e+02 Score=21.44 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDA---EKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL 93 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~s---EN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~ 93 (202)
|.+|-.++...+.-.+.-...++.+.++...+.. ....|++++..-......-.+--|.+..|++.|...+
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence 3444444444444444444444444433333333 4556666666555555554555566666666665544
No 210
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.35 E-value=2.5e+02 Score=21.10 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRS--NSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 23 I~ELE~kVq~LQ~--ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
+..|++.|..|-+ ++..|+.+|..+...+..|..+-++.=.+|..+
T Consensus 30 vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~ 77 (130)
T 2dnx_A 30 TAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSL 77 (130)
T ss_dssp HHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666665554 356777888888877777777777776667665
No 211
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=22.10 E-value=3e+02 Score=21.94 Aligned_cols=17 Identities=12% Similarity=0.300 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046677 75 QDSLNDQIRSEIQHMKT 91 (202)
Q Consensus 75 kdaLnE~Lk~EvqrLK~ 91 (202)
-+++|+.|+.|+..|-.
T Consensus 195 ye~ln~~L~~eLp~l~~ 211 (251)
T 2fic_A 195 FEEMNVDLQEELPSLWN 211 (251)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666655543
No 212
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.46 E-value=1.5e+02 Score=20.84 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 18 RKKLYIYMLEHKMHNLRSNSTTLTAQLTLL 47 (202)
Q Consensus 18 RKkqYI~ELE~kVq~LQ~ENa~LsaqltlL 47 (202)
.|-.-|.+||..+..-..++..|+.++..+
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777666666666666555443
No 213
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=21.09 E-value=2.2e+02 Score=19.83 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677 39 TLTAQLTLLETESNSLDAEKAVLKHRLEITLQ 70 (202)
Q Consensus 39 ~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq 70 (202)
.+...+.........+..+-..|..+++.++.
T Consensus 24 ~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~ 55 (81)
T 1ic2_A 24 QAEADKKAAEERSKQLEDELVALQKKLKGTED 55 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444443
No 214
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=21.05 E-value=2.3e+02 Score=20.16 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
-..+||.+...|..+...|..+++..+..+..|.....+|-..|..+
T Consensus 36 ~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 36 IKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777777777777777777777776666665555444
No 215
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.95 E-value=2.5e+02 Score=20.58 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTA 42 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~Lsa 42 (202)
|.+|+.++..|+.+...+.+
T Consensus 10 i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 216
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.80 E-value=3.2e+02 Score=23.15 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677 2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs 67 (202)
+|+-|+.|-++-++ -+..|+.+++..+.|+.++.+.++...+....+...-..+-...++
T Consensus 165 Ik~yLa~R~~~lK~------kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (228)
T 3q0x_A 165 VKQFLAFRLSEVKG------TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQA 224 (228)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeec
No 217
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.64 E-value=2.9e+02 Score=21.12 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhHhhHHHHHHHHH
Q 046677 40 LTAQLTLLETESNSLDAEKAVLKH 63 (202)
Q Consensus 40 LsaqltlLq~~~~~L~sEN~eLK~ 63 (202)
|-.+.-.|+.....+..||+-|+.
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555655554
No 218
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=20.49 E-value=3.7e+02 Score=22.38 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046677 27 EHKMHNLRSNSTTLTAQL---TLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSE 85 (202)
Q Consensus 27 E~kVq~LQ~ENa~Lsaql---tlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~E 85 (202)
|+.+..|..+|..|..++ -..=++|..+......+-.+|-....-..+.+++.+.++++
T Consensus 71 erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~ 132 (252)
T 3e98_A 71 ERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHE 132 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
No 219
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.41 E-value=2.1e+02 Score=19.33 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677 35 SNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL 69 (202)
Q Consensus 35 ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe 69 (202)
.||++|..-+..|+.++..|...-.-|...+..+|
T Consensus 17 kenaklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 36666666666666665555555444444444443
No 220
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=20.15 E-value=62 Score=27.44 Aligned_cols=49 Identities=16% Similarity=0.051 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHH
Q 046677 9 RMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAE 57 (202)
Q Consensus 9 ReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sE 57 (202)
|++..---.....-.+++..++..|+.|+.++..+|..+.++....+++
T Consensus 136 RE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te 184 (250)
T 2ve7_C 136 REACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTV 184 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
No 221
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.10 E-value=2.4e+02 Score=20.04 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNL 33 (202)
Q Consensus 21 qYI~ELE~kVq~L 33 (202)
.||..|+.++..+
T Consensus 52 ~YI~~L~~~~~~l 64 (88)
T 1nkp_A 52 AYILSVQAEEQKL 64 (88)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444333333
Done!