Query 046677
Match_columns 202
No_of_seqs 160 out of 336
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 05:15:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046677.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046677hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 76.1 1.7 0.00012 27.8 4.2 25 20-44 32-56 (61)
2 d1am9a_ a.38.1.1 (A:) SREBP-1a 61.1 7.4 0.00054 25.7 5.1 58 11-68 13-76 (80)
3 d1nlwa_ a.38.1.1 (A:) Mad prot 60.0 9.3 0.00068 24.9 5.4 25 20-44 46-70 (79)
4 d1seta1 a.2.7.1 (A:1-110) Sery 53.3 24 0.0018 23.9 7.0 78 21-98 28-106 (110)
5 d2oa5a1 d.362.1.1 (A:7-102) Un 52.0 3.9 0.00028 29.3 2.4 24 23-46 4-27 (96)
6 d1seta1 a.2.7.1 (A:1-110) Sery 50.4 33 0.0024 23.2 12.5 47 11-58 12-58 (110)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 37.8 48 0.0035 21.6 6.4 13 21-33 52-64 (88)
8 d1qvra2 c.37.1.20 (A:149-535) 33.8 1.1E+02 0.0082 25.0 9.4 32 10-41 239-273 (387)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 29.0 78 0.0057 21.5 6.5 25 23-47 3-27 (133)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 28.6 46 0.0034 21.2 4.8 15 51-65 63-77 (79)
11 d2oa5a1 d.362.1.1 (A:7-102) Un 26.0 17 0.0012 25.8 2.2 23 45-67 5-27 (96)
12 d2bdea1 c.108.1.23 (A:2-459) C 25.9 25 0.0018 30.6 3.8 13 22-34 322-334 (458)
13 d1sknp_ a.37.1.1 (P:) Skn-1 {C 24.5 12 0.0009 25.5 1.2 24 2-25 50-73 (74)
14 d2azeb1 e.63.1.2 (B:201-301) T 22.4 1.1E+02 0.0082 20.9 6.3 17 26-42 6-22 (101)
15 d1fxka_ a.2.5.1 (A:) Prefoldin 21.1 86 0.0062 21.0 5.3 12 23-34 31-42 (107)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.12 E-value=1.7 Score=27.84 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQL 44 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~Lsaql 44 (202)
..||..|+.+|..|..|+..|+...
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988888887654
No 2
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.13 E-value=7.4 Score=25.67 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677 11 SAIRAKERKKLYIYMLEHKMHNLR---SNSTTLTA---QLTLLETESNSLDAEKAVLKHRLEIT 68 (202)
Q Consensus 11 SAqRSReRKkqYI~ELE~kVq~LQ---~ENa~Lsa---qltlLq~~~~~L~sEN~eLK~RLqsL 68 (202)
+-++-|.+=...+.+|..-|-... +..+-|.. -|..|+.....|..+|..|+..+...
T Consensus 13 ~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 13 IEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333455566655443211 12222222 23455566666666666666655543
No 3
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.97 E-value=9.3 Score=24.90 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 20 KLYIYMLEHKMHNLRSNSTTLTAQL 44 (202)
Q Consensus 20 kqYI~ELE~kVq~LQ~ENa~Lsaql 44 (202)
..||..|+.++..+..+...|..++
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~ 70 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQ 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655555544444433
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=53.29 E-value=24 Score=23.93 Aligned_cols=78 Identities=8% Similarity=0.029 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 046677 21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLD-AEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIP 98 (202)
Q Consensus 21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~-sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~ 98 (202)
..+-+|..+...+..+...|.++...+..+..... .+..+|+.++..+..+..-.+..-..+.+++..+-..+|-+|+
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~~ 106 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPW 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 34555555555555555555555544444332221 1223344444333333322233334445666555555554443
No 5
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=52.00 E-value=3.9 Score=29.33 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTL 46 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~Lsaqltl 46 (202)
++||..++..|+.||..|+.++..
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~ 27 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKS 27 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888999888888888887754
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=50.42 E-value=33 Score=23.22 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHH
Q 046677 11 SAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEK 58 (202)
Q Consensus 11 SAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN 58 (202)
.+-+...++..|-.++ .+|-.|-.+...+..++..|+.+...++.+-
T Consensus 12 e~v~~~l~~R~~~~~l-d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 12 EVFHRAIREKGVALDL-EALLALDREVQELKKRLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHTTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHcCCccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555 4666666666666666666666665555444
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.77 E-value=48 Score=21.55 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 046677 21 LYIYMLEHKMHNL 33 (202)
Q Consensus 21 qYI~ELE~kVq~L 33 (202)
.||..|+.++..|
T Consensus 52 ~yI~~L~~~~~~l 64 (88)
T d1nkpa_ 52 AYILSVQAEEQKL 64 (88)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444433333
No 8
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=33.76 E-value=1.1e+02 Score=25.03 Aligned_cols=32 Identities=25% Similarity=0.158 Sum_probs=20.9
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 046677 10 MSAIRAKER---KKLYIYMLEHKMHNLRSNSTTLT 41 (202)
Q Consensus 10 eSAqRSReR---KkqYI~ELE~kVq~LQ~ENa~Ls 41 (202)
++++|-|+. |-.-++++++++..|+.|...|.
T Consensus 239 ~a~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ 273 (387)
T d1qvra2 239 EAAARLRMALESAPEEIDALERKKLQLEIEREALK 273 (387)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 344554443 34567888888888888777663
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=28.97 E-value=78 Score=21.52 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLRSNSTTLTAQLTLL 47 (202)
Q Consensus 23 I~ELE~kVq~LQ~ENa~LsaqltlL 47 (202)
+++|...+..|+.+...|..++..+
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l 27 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAV 27 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554433
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.55 E-value=46 Score=21.21 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=6.2
Q ss_pred hHhhHHHHHHHHHHH
Q 046677 51 SNSLDAEKAVLKHRL 65 (202)
Q Consensus 51 ~~~L~sEN~eLK~RL 65 (202)
...|..++..|+.+|
T Consensus 63 ~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 63 IDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444433
No 11
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=26.03 E-value=17 Score=25.85 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=16.2
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHH
Q 046677 45 TLLETESNSLDAEKAVLKHRLEI 67 (202)
Q Consensus 45 tlLq~~~~~L~sEN~eLK~RLqs 67 (202)
..|..+...|..||+.||.++..
T Consensus 5 EeLaaeL~rL~~ENk~LKkkl~~ 27 (96)
T d2oa5a1 5 EEMVKEVERLKLENKTLKQKVKS 27 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666889999999987754
No 12
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Probab=25.90 E-value=25 Score=30.56 Aligned_cols=13 Identities=8% Similarity=0.020 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHH
Q 046677 22 YIYMLEHKMHNLR 34 (202)
Q Consensus 22 YI~ELE~kVq~LQ 34 (202)
=|.|||.++....
T Consensus 322 Ii~ELe~Ei~~~~ 334 (458)
T d2bdea1 322 VVEELGEEIASQI 334 (458)
T ss_dssp ECTTHHHHHHHHH
T ss_pred ehHHHHHHHHhhh
Confidence 3678888886553
No 13
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=24.52 E-value=12 Score=25.49 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=19.9
Q ss_pred chhhHHhhhhHHHHHHHHHHHHHH
Q 046677 2 CHRIVANRMSAIRAKERKKLYIYM 25 (202)
Q Consensus 2 aKRiLaNReSAqRSReRKkqYI~E 25 (202)
+||-=+|+..|++=|.||..-+++
T Consensus 50 IRRRGKNKvAAqnCRKRKld~~d~ 73 (74)
T d1sknp_ 50 IRRRGKNKVAARTCRQRRTDRHDK 73 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhcccHHHHHHHHHhhhhhhcc
Confidence 467779999999999999876554
No 14
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.44 E-value=1.1e+02 Score=20.90 Aligned_cols=17 Identities=18% Similarity=0.388 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046677 26 LEHKMHNLRSNSTTLTA 42 (202)
Q Consensus 26 LE~kVq~LQ~ENa~Lsa 42 (202)
|..++..|..+-..|-.
T Consensus 6 L~~El~~L~~~E~~LD~ 22 (101)
T d2azeb1 6 LTQDLRQLQESEQQLDH 22 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334333333333333
No 15
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.13 E-value=86 Score=20.97 Aligned_cols=12 Identities=17% Similarity=0.255 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 046677 23 IYMLEHKMHNLR 34 (202)
Q Consensus 23 I~ELE~kVq~LQ 34 (202)
+.|.+.-...|.
T Consensus 31 ~~E~~~vl~eL~ 42 (107)
T d1fxka_ 31 INETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334443333333
Done!