BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046678
(74 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82732|DF184_ARATH Putative defensin-like protein 184 OS=Arabidopsis thaliana
GN=LCR18 PE=3 SV=1
Length = 76
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 2 AKFTIVCFLLAFLLVSDGNMFLGAQANTCEKFWACNGDDQCKADCQKNYKGTGWCDFHKA 61
+ V ++ FL+ S GN + +A C++ W C G+D+C+ C + G G CD + A
Sbjct: 4 SSILFVLIIVVFLISSSGNKKMVGEAKKCDQTWTCEGEDKCREKCLTLHNGVGVCDLYTA 63
Query: 62 IPPEKYCFCQYNC 74
K CFC Y+C
Sbjct: 64 PLVPKQCFCHYDC 76
>sp|P82757|DF187_ARATH Putative defensin-like protein 187 OS=Arabidopsis thaliana
GN=LCR42 PE=5 SV=1
Length = 77
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 9 FLLAFLLVSDGNMFLGAQANTCEKFWACNGDDQCKADCQKNYKGTGWCDFHKAIPPEK-- 66
++ FL+ S N + +A C+ WAC G+D CK C YKG G + PPE
Sbjct: 10 LIVVFLISSSENQKMVGEAKQCKTGWACFGEDACKEKCMAKYKGVGTVTYF-PFPPETII 68
Query: 67 -YCFCQYNC 74
YC C Y+C
Sbjct: 69 IYCECLYDC 77
>sp|P82756|DF188_ARATH Putative defensin-like protein 188 OS=Arabidopsis thaliana
GN=LCR41 PE=3 SV=1
Length = 81
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 9 FLLAFLLVSDGNMFLGAQANTCEKFWACNGDDQCKADCQKNYKGTGWCDFHKAIPPEK-- 66
++ F++ S N + +A C W C GD++CK C +YKG G C + PP K
Sbjct: 10 LIVVFVISSSENGIMIGEAKKCSNSWICEGDEKCKEKCMADYKGNGTCYYPS--PPSKQH 67
Query: 67 ------YCFCQYNC 74
C+C ++C
Sbjct: 68 PEFFYPTCWCGFDC 81
>sp|P82755|DF186_ARATH Putative defensin-like protein 186 OS=Arabidopsis thaliana
GN=LCR40 PE=3 SV=1
Length = 74
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 1 MAKFTIVCFLLAFLLVSDGNMFLGAQANTCEKFWACNGDDQCKADCQKNYKGTGWCDFHK 60
M +I+ L+ F +S +A TC W C G+D+CK +C +KG G C +
Sbjct: 1 MKNSSIILVLVFFFFISSS-----GEAKTCSDGWTCVGEDKCKVNCMAKHKGVGTCTLYI 55
Query: 61 ----AIPPEKY-CFCQYNC 74
P Y C C ++C
Sbjct: 56 IPSFPAPITSYICDCMFDC 74
>sp|P82754|DF185_ARATH Putative defensin-like protein 185 OS=Arabidopsis thaliana
GN=LCR39 PE=3 SV=1
Length = 77
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 1 MAKFTIVCFLLAFLLVSDGNMFLGAQANTCEKFWACNG---DDQCKADCQKNYKGTGWCD 57
M +I+ L+ F ++S +A TC W C G +D+CK +C +KG G C+
Sbjct: 1 MKNSSILLLLVVFFVISSS-----GEAKTCSDGWTCLGPKEEDKCKENCMAKHKGVGTCN 55
Query: 58 FHKAIP----PEKY--CFCQYNC 74
+ IP P Y C C ++C
Sbjct: 56 LY-TIPEFPAPITYYMCDCMFDC 77
>sp|P82774|DF172_ARATH Defensin-like protein 172 OS=Arabidopsis thaliana GN=LCR60 PE=2
SV=1
Length = 84
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 7 VCFLLAFLLVSDGNMFLGAQANTCEKFWACNGDDQCKADCQKNY--KGTGWCDFHKAIPP 64
+ FL+ F LV + NM A CEK D C A C+ + + G+CD+ + P
Sbjct: 12 IIFLVMFALV-EQNMGCTATMGPCEK------DKSCSATCRATFGDRANGFCDYSTSTSP 64
Query: 65 EKYCFCQYNC 74
C C Y+C
Sbjct: 65 GGECTCVYHC 74
>sp|P82744|DF131_ARATH Putative defensin-like protein 131 OS=Arabidopsis thaliana
GN=LCR29 PE=3 SV=2
Length = 83
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 9 FLLAFLLVSDGNMFLGAQANTCEKFWA---CNGDDQCKADCQKNYKGTGWCDFHKAIPPE 65
+ + F V G + Q + C + C+ D C DC+ +KGTG C+ P
Sbjct: 16 YCICFKYVLLGMVVEKTQGHICHDYLEGDHCDPKD-CNLDCRDKWKGTGTCEPPTGTPLT 74
Query: 66 KYCFCQYNC 74
+ C+C Y+C
Sbjct: 75 RTCYCTYDC 83
>sp|P82728|DF129_ARATH Putative defensin-like protein 129 OS=Arabidopsis thaliana
GN=LCR13 PE=3 SV=1
Length = 77
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 1 MAKFTIVCFLLAFLLVSDGNMFLGAQANTCEKFWACNG--DDQCKADCQKNYKGTG---W 55
M K T + + L++ + Q +TC ++ ++QC ++C +K G +
Sbjct: 1 MTKNTALTIFMVVLVIE--MVMEETQGDTCHEYLYPEKCENNQCNSECATKFKEVGVFGF 58
Query: 56 CDFHKAIPPEKYCFCQYNC 74
C ++ P E++C C YNC
Sbjct: 59 CVPPRSEPTEQFCICSYNC 77
>sp|P82739|DF159_ARATH Defensin-like protein 159 OS=Arabidopsis thaliana GN=LCR25 PE=3
SV=1
Length = 77
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 1 MAKFTIVCFLLAFLLVSDGNMFLGAQANTC----EKFWACNGDDQCKADCQKNYKGTGWC 56
MAK + FL+ L+ S M A+ C +K AC+ D C+ C Y G G C
Sbjct: 1 MAKLSCSYFLVLILVFSAFLMVERAEGKRCHLTIDKATACSLSD-CRLSCYSGYNGVGKC 59
Query: 57 DFHKAIPPEKYCFCQYNC 74
+ C C YNC
Sbjct: 60 FDDPKVAGPSNCGCIYNC 77
>sp|Q9M0F1|DF161_ARATH Defensin-like protein 161 OS=Arabidopsis thaliana GN=LCR27 PE=3
SV=2
Length = 77
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 1 MAKFTIVCFLLAFLLVSDGNMFLGAQAN-----TCEKFWACNGDDQCKADCQKNYKGTGW 55
MAK + +LL F+LV + + T +K C+ D C+ C Y G G
Sbjct: 1 MAKLSCS-YLLVFMLVFSAILMVEKVEGEECRLTIDKATPCHLSD-CRLSCYTGYNGVGE 58
Query: 56 CDFHKAIPPEKYCFCQYNC 74
C +P C C+YNC
Sbjct: 59 CFDDPNVPGPDNCGCRYNC 77
>sp|P82734|DF127_ARATH Defensin-like protein 127 OS=Arabidopsis thaliana GN=LCR20 PE=3
SV=1
Length = 75
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 9 FLLAFLLVSDGNMF--LGAQANTCEKFWACN--GDDQCKADCQKNYKGTGWC---DFHKA 61
FL ++++ G+M + Q C+KF + G C A C + +KG G C D HK
Sbjct: 6 FLFVYIILILGSMVNEIQGQNAICQKFLSETDCGAGSCTALCLQLWKGIGKCIKTDDHKL 65
Query: 62 IPPEKYCFCQYNC 74
+ C C+Y C
Sbjct: 66 L-----CLCKYEC 73
>sp|P82621|DF226_ARATH Defensin-like protein 226 OS=Arabidopsis thaliana GN=SCRL2 PE=3
SV=1
Length = 92
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 27/92 (29%)
Query: 4 FTIVCFLLAFLLVSDGNMFLGAQANTCEKFWACNGDDQCKADCQKNYKGTGWCDFHK--- 60
F I C L+ FL++S + + W C+ + C N K T D K
Sbjct: 7 FMISCLLITFLVLSH------VREVESKTKWGCDMNRPFPGKCGTNGKDTCISDIKKMPG 60
Query: 61 ------------------AIPPEKYCFCQYNC 74
PPE+ C CQY+C
Sbjct: 61 APKDLVVRCECSQRFVWKGYPPERLCKCQYDC 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.141 0.524
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,243,408
Number of Sequences: 539616
Number of extensions: 931420
Number of successful extensions: 2251
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2232
Number of HSP's gapped (non-prelim): 38
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)