BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046680
         (343 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
           (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
 pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
           (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
 pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
           (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
 pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
           (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
 pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
           (Cgs) From Mycobacterium Ulcerans Agy99
 pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
           (Cgs) From Mycobacterium Ulcerans Agy99
 pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
           (Cgs) From Mycobacterium Ulcerans Agy99
 pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
           (Cgs) From Mycobacterium Ulcerans Agy99
          Length = 392

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 235 IVWMRTAALPTFRKLYGRIESDIQANDSVTVIIENNYNTYSFG-----GKKKLVLSTTTW 289
           ++W+ T   P          + + A+ S  V+++N + + +       G   ++ STT +
Sbjct: 154 LIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTXY 213

Query: 290 IGGKNDFLGIAYIT 303
           IGG +D +G A +T
Sbjct: 214 IGGHSDVVGGALVT 227


>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
           L-Methionine-Lyase
          Length = 398

 Score = 28.1 bits (61), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 200 HKFGSDVYPKNFQNGVLIGGGKLNSSIPLSKQEALIVWMRTAALPTFRKLYGRIESDIQA 259
           H F S   PK   N   +  GK        + E  +V++ T A PT   +     + I  
Sbjct: 117 HAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAH 176

Query: 260 NDSVTVIIENNYNTYSFG-----GKKKLVLSTTTWIGGKNDFLG 298
                ++++N + +         G   +V S T +I G  D +G
Sbjct: 177 QQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIG 220


>pdb|2ZUQ|B Chain B, Crystal Structure Of Dsbb-Fab Complex
 pdb|2ZUQ|E Chain E, Crystal Structure Of Dsbb-Fab Complex
 pdb|2LTQ|B Chain B, High Resolution Structure Of Dsbb C41s By Joint
           Calculation With Solid-state Nmr And X-ray Data
 pdb|2LTQ|E Chain E, High Resolution Structure Of Dsbb C41s By Joint
           Calculation With Solid-state Nmr And X-ray Data
          Length = 239

 Score = 27.7 bits (60), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 255 SDIQANDSVTVIIENNYNTYSFGGKKKL 282
           S +QA D      + +YN Y+FGG  KL
Sbjct: 102 SSVQAEDLAVYYCKQSYNLYTFGGGTKL 129


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,729,494
Number of Sequences: 62578
Number of extensions: 383939
Number of successful extensions: 793
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 9
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)