Query 046680
Match_columns 343
No_of_seqs 115 out of 521
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:23:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2952 Cell cycle control pro 100.0 6E-110 1E-114 791.2 25.2 324 10-337 14-351 (351)
2 COG5035 CDC50 Cell cycle contr 100.0 6.8E-97 1E-101 688.2 22.0 321 12-337 16-372 (372)
3 PF03381 CDC50: LEM3 (ligand-e 100.0 7.1E-84 1.5E-88 613.5 22.6 261 59-330 1-278 (278)
4 PF01102 Glycophorin_A: Glycop 79.0 1.8 3.8E-05 36.8 2.7 25 299-323 66-90 (122)
5 COG1470 Predicted membrane pro 60.4 37 0.0008 35.2 7.8 60 255-324 454-513 (513)
6 PF11797 DUF3324: Protein of u 55.5 12 0.00025 32.2 3.0 48 238-286 84-131 (140)
7 PF05393 Hum_adeno_E3A: Human 50.8 23 0.0005 28.4 3.6 33 290-322 26-58 (94)
8 PF13120 DUF3974: Domain of un 48.5 19 0.00041 29.4 2.9 36 297-337 4-39 (126)
9 PF01102 Glycophorin_A: Glycop 45.3 33 0.00072 29.1 4.1 31 295-325 65-95 (122)
10 PF05915 DUF872: Eukaryotic pr 40.0 37 0.00081 28.4 3.6 24 39-62 44-67 (115)
11 PF14991 MLANA: Protein melan- 38.9 7.3 0.00016 32.6 -0.8 41 275-327 12-52 (118)
12 PF12669 P12: Virus attachment 35.6 27 0.00059 25.6 1.8 25 303-327 3-27 (58)
13 KOG4753 Predicted membrane pro 33.6 88 0.0019 26.5 4.7 29 33-61 45-73 (124)
14 PF12273 RCR: Chitin synthesis 33.5 28 0.00061 29.3 1.9 24 39-62 1-24 (130)
15 PF10204 DuoxA: Dual oxidase m 32.2 37 0.00081 32.8 2.7 33 292-327 239-271 (281)
16 PF08507 COPI_assoc: COPI asso 32.0 1E+02 0.0022 26.2 5.1 28 298-325 85-112 (136)
17 PF12158 DUF3592: Protein of u 31.9 60 0.0013 27.0 3.7 24 38-61 121-147 (148)
18 PF11014 DUF2852: Protein of u 30.1 72 0.0016 26.8 3.7 29 33-62 4-32 (115)
19 PF05915 DUF872: Eukaryotic pr 29.7 47 0.001 27.8 2.6 27 293-319 42-68 (115)
20 PF12606 RELT: Tumour necrosis 28.3 63 0.0014 23.1 2.6 26 299-324 2-27 (50)
21 PF04835 Pox_A9: A9 protein co 26.8 1.1E+02 0.0023 22.3 3.5 19 49-67 33-51 (54)
22 PRK02935 hypothetical protein; 26.2 85 0.0018 26.0 3.4 68 37-112 35-105 (110)
23 PF09788 Tmemb_55A: Transmembr 25.7 71 0.0015 30.5 3.2 24 40-63 196-219 (256)
24 PF06365 CD34_antigen: CD34/Po 25.2 56 0.0012 30.1 2.4 26 299-324 103-128 (202)
25 PF01299 Lamp: Lysosome-associ 24.8 53 0.0012 31.7 2.4 24 302-325 275-298 (306)
26 PF12273 RCR: Chitin synthesis 23.7 71 0.0015 26.9 2.6 7 330-336 35-41 (130)
27 PF15048 OSTbeta: Organic solu 23.5 1.1E+02 0.0024 26.1 3.6 25 299-323 37-61 (125)
28 PF04478 Mid2: Mid2 like cell 23.4 15 0.00032 32.4 -1.6 10 292-301 47-56 (154)
29 PF02038 ATP1G1_PLM_MAT8: ATP1 22.4 71 0.0015 22.9 2.0 23 297-319 14-36 (50)
30 PF08114 PMP1_2: ATPase proteo 22.1 73 0.0016 21.9 1.9 23 300-322 13-35 (43)
31 PF13038 DUF3899: Domain of un 21.3 93 0.002 24.4 2.7 24 44-67 4-27 (92)
32 KOG0196 Tyrosine kinase, EPH ( 20.8 3.2E+02 0.0069 30.7 7.3 56 256-314 504-566 (996)
33 PF11023 DUF2614: Protein of u 20.5 1.2E+02 0.0027 25.4 3.3 67 38-112 35-104 (114)
No 1
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-110 Score=791.15 Aligned_cols=324 Identities=52% Similarity=0.958 Sum_probs=297.5
Q ss_pred CCCCcCCCCCCCCccccccccCcccccchhHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEEcCCCCCCCCCCCCcccee
Q 046680 10 SSSSSKTKKPQYSKFTQQELSACKPILTPGYVIGIFIIVGVIFIPVGIISLFASENVVEIVDRYDEGCIPPNYSDDMLAY 89 (343)
Q Consensus 10 ~~~~~~s~~p~~~~f~QQ~L~aw~p~~tp~~vi~~f~~igiifi~iGi~l~~~s~~~~E~~i~Y~~~c~~~~~~~~~~~~ 89 (343)
++..+++|||++++|+|||||||||++||.+|+++|+++|++|++||+++++++++|.|++++|++ |.+.+....+.++
T Consensus 14 ~~~~~~s~rP~~t~f~QQrLpA~qPilt~~~vlp~f~i~g~vFipiGv~l~~as~~v~Ei~i~YTd-c~~~~~~~~~~~~ 92 (351)
T KOG2952|consen 14 KGNRKKSRRPKNTAFKQQRLPAWQPILTPRTVLPLFFIIGVVFLPIGVGLLFASSKVIEITIRYTD-CIPTGFRTNPSEY 92 (351)
T ss_pred cchhhhccCCccccchhccccccccccCcchHHHHHHHHHHHHHhhhhheeEeecceEEEEEeccc-Cccccccccchhh
Confidence 346778999999999999999999999999999999999999999999999999999999999976 8775545555565
Q ss_pred eecC-CCCceeEEEEEecCCCCCceEEEEEecchhhhhhhhhcCCCccccCCCCCCC-CCCCCCcccccCC-ceeeechh
Q 046680 90 IQNS-DTNKTCTRSLKATKLMKSPVYIYYQLDNFYQNHRRYVKSRNDKQLWSKKHED-ETKNCAPEATSNG-LSIVPCGL 166 (343)
Q Consensus 90 ~~~~-~~~~~C~i~f~i~~~m~~pVyvYY~L~nFyQNHR~y~~Srs~~QL~G~~~~~-~~~~C~P~~~~~g-~~i~PCGl 166 (343)
++.. .+.+.|+++|+|+++|++|||+||+|+|||||||||++|||++||+|+.... ..+.|.|+++.++ ++|+||||
T Consensus 93 ~~~~~~~~~~C~~~f~vp~~~k~pVy~YY~L~nfyQNhRRYvkSr~d~QL~G~~~~~~~~~~C~Pl~~~~~~kpi~PCGl 172 (351)
T KOG2952|consen 93 IQGHFDQTKSCTITFTVPKDMKGPVYLYYELTNFYQNHRRYVKSRDDKQLRGEPSKELNVKSCAPLEYNEGGKPIYPCGL 172 (351)
T ss_pred hhcccCcccceEEEEEccccCCCCEEEEEehhHHHHHHHHHHhcccHHHhcCCCccccCccCCCcceecCCCceeeecch
Confidence 5432 2346799999999999999999999999999999999999999999997753 2366999999766 99999999
Q ss_pred hhhccccceeeccccCe---eeeeeccccCCccccccccCCCCC-------CCCCCCCcccCCcccCCCCCCcchhhHHH
Q 046680 167 IAWSLFNDSYGFSIKNK---MVKVSKKNIAWESDKKHKFGSDVY-------PKNFQNGVLIGGGKLNSSIPLSKQEALIV 236 (343)
Q Consensus 167 iA~S~FNDtF~l~~~~~---~i~~~~~gIaw~sD~~~kF~~~~~-------p~~~~~~~~~~~~~~~~~~~~~~ne~Fiv 236 (343)
||||||||||++...+. .++++++||||++|+ +||+++.+ |+||+++.+.+| .+|+++|+.+||+|||
T Consensus 173 IAnSlFNDTf~~~~~~~~~~~~~l~~kgIaW~sDk-~kf~~p~~n~~~~~pPpnW~k~~~~gg-~~d~n~pl~~nedfiv 250 (351)
T KOG2952|consen 173 IANSLFNDTFELSLTNDGDSDYPLTTKGIAWESDK-HKFRKPIYNASGIVPPPNWQKGYPEGG-YTDDNIPLSENEDFIV 250 (351)
T ss_pred hcchhcccccchhcccCCCccceeccCCccchhhh-hhhcCCCCccccccCCccccccCCcCC-cCCCCCCchhhHHHHH
Confidence 99999999999976533 789999999999999 89999766 999999999888 8889999899999999
Q ss_pred HHhcCCCCchhhhhhccccc-CCCCceEEEEEEeeecccccCceEEEEEEeccccCccCcchhHHHHHHHHHHHHHHHHH
Q 046680 237 WMRTAALPTFRKLYGRIESD-IQANDSVTVIIENNYNTYSFGGKKKLVLSTTTWIGGKNDFLGIAYITVGGLCLFLAISF 315 (343)
Q Consensus 237 WMr~Aalp~FrKLYg~i~~~-l~~g~~y~v~I~n~ypv~~F~G~K~ivlst~s~~GgkN~~Lgi~ylvvG~i~~i~~i~f 315 (343)
|||+||||+||||||+|+++ |++| +|+++|++||||++|+|+|.+||+|+||+||||+||||+|||||++|+++|++|
T Consensus 251 WMRtAAlPtFrKLy~~i~~~gL~~G-~y~l~i~~Nypv~sf~G~K~~vlst~SwlGgkN~FLgI~YLvVG~ic~~l~~~f 329 (351)
T KOG2952|consen 251 WMRTAALPTFRKLYRIIESNGLPKG-TYQLNITNNYPVRSFNGKKKFVLSTTSWLGGKNPFLGIAYLVVGSICILLGLIF 329 (351)
T ss_pred HHHhcccchHHHHHhhhccCCCCCc-eEEEEEecccceeecCCceEEEEeeccccccCCccceehHHHHHHHHHHHHHHH
Confidence 99999999999999999987 9999 699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCccccccCCC
Q 046680 316 ILVYVVMPRPLGDPAFLSWNRH 337 (343)
Q Consensus 316 ~~~~~~~~r~~gd~~~L~w~~~ 337 (343)
+++|+++||++||+++|+|+++
T Consensus 330 ~~~~l~~~r~~~d~~~l~~~~~ 351 (351)
T KOG2952|consen 330 LVIYLFKPRRLGDPSYLSWNRS 351 (351)
T ss_pred HHHHhhcccccCCccccccccC
Confidence 9999999999999999999974
No 2
>COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-97 Score=688.24 Aligned_cols=321 Identities=37% Similarity=0.679 Sum_probs=284.3
Q ss_pred CCcCCCCCCCCccccccccCcccccchhHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEEcCCCCCCCCCC-------C-
Q 046680 12 SSSKTKKPQYSKFTQQELSACKPILTPGYVIGIFIIVGVIFIPVGIISLFASENVVEIVDRYDEGCIPPNY-------S- 83 (343)
Q Consensus 12 ~~~~s~~p~~~~f~QQ~L~aw~p~~tp~~vi~~f~~igiifi~iGi~l~~~s~~~~E~~i~Y~~~c~~~~~-------~- 83 (343)
+..++|||.+++|+|||||||||++||+.|+++||++|++|.++|+.+++++.+|+|++|+|++ |...++ +
T Consensus 16 ~~~k~r~p~nt~F~QQrL~awqpilsp~~vLpL~flig~vf~plG~gl~~~~s~VqeltI~Ytd-c~t~as~~f~~iPs~ 94 (372)
T COG5035 16 SLLKSRRPPNTAFRQQRLKAWQPILSPRTVLPLLFLIGIVFAPLGGGLLVASSSVQELTIDYTD-CMTLASDEFSDIPSE 94 (372)
T ss_pred ccccccCCchhhHHHhhccccccccCchHHHHHHHHHHHHHhhccceEEEEeeeeeeeeecccc-cccccchhhhhCchh
Confidence 6678999999999999999999999999999999999999999999999999999999999998 765441 0
Q ss_pred ------------CccceeeecC-CCCceeEEEEEecCCCCCceEEEEEecchhhhhhhhhcCCCccccCCCCCCCCC--C
Q 046680 84 ------------DDMLAYIQNS-DTNKTCTRSLKATKLMKSPVYIYYQLDNFYQNHRRYVKSRNDKQLWSKKHEDET--K 148 (343)
Q Consensus 84 ------------~~~~~~~~~~-~~~~~C~i~f~i~~~m~~pVyvYY~L~nFyQNHR~y~~Srs~~QL~G~~~~~~~--~ 148 (343)
...|....+. .+..+|++.|++|++||.|||+||+|+|||||||||++|.|.+||+|+....+. +
T Consensus 95 ~~~~~f~~~~~~~pqW~~~~~~~~d~~~C~irf~vp~~~k~~vfiyyrl~nFyQNhrRY~~S~d~dQl~Ge~~~~~~l~~ 174 (372)
T COG5035 95 YIQFHFKKKVNVLPQWRFSTDEEDDFQKCQIRFTVPSDMKKPVFIYYRLTNFYQNHRRYVKSFDEDQLRGEALKSDDLKS 174 (372)
T ss_pred heeeeeecccccccceeecccccCCcceeEEEEEchhhcccceeeeehhHHHHHhhHHHHhccCHHHhcCcccccccccc
Confidence 0112222111 234579999999999999999999999999999999999999999999776433 7
Q ss_pred CCCcccccCCceeeechhhhhccccceeeccc----cCeeeeeeccccCCccccccccCCC-------CCCCCCCCCccc
Q 046680 149 NCAPEATSNGLSIVPCGLIAWSLFNDSYGFSI----KNKMVKVSKKNIAWESDKKHKFGSD-------VYPKNFQNGVLI 217 (343)
Q Consensus 149 ~C~P~~~~~g~~i~PCGliA~S~FNDtF~l~~----~~~~i~~~~~gIaw~sD~~~kF~~~-------~~p~~~~~~~~~ 217 (343)
.|.|+.+..+|+||||||||||||||||+... +++.+.++.+||||++|++ ||+.+ ++||||.+.+++
T Consensus 175 nC~PL~~nedK~~YPcGLIaNSmfNDtf~~~l~~i~Dts~Y~lttkgIaW~sDr~-rykktkYn~sdIvpPPnW~k~ypd 253 (372)
T COG5035 175 NCKPLSYNEDKIIYPCGLIANSMFNDTFSSLLTGIEDTSNYNLTTKGIAWESDRH-RYKKTKYNASDIVPPPNWAKMYPD 253 (372)
T ss_pred cCCcccccCCCeeecccccccccccccchhhccccccccccccccCCccchhhcc-cccCCCCChhhcCCCCchHhhCCC
Confidence 89999998889999999999999999998753 3456889999999999996 89875 468999776665
Q ss_pred CCcccCCCCC-CcchhhHHHHHhcCCCCchhhhhhcccc-cCCCCceEEEEEEeeecccccCceEEEEEEeccccCccCc
Q 046680 218 GGGKLNSSIP-LSKQEALIVWMRTAALPTFRKLYGRIES-DIQANDSVTVIIENNYNTYSFGGKKKLVLSTTTWIGGKND 295 (343)
Q Consensus 218 ~~~~~~~~~~-~~~ne~FivWMr~Aalp~FrKLYg~i~~-~l~~g~~y~v~I~n~ypv~~F~G~K~ivlst~s~~GgkN~ 295 (343)
| .-|+++| +.++|.|+||||+||||+|+||++|.+. .|.+| +|+++|+.||||.+|+|+|+|||+|.|.+||||+
T Consensus 254 G--Ytd~NiPDls~wE~Fq~WMrtAafP~F~KLa~~N~~d~l~~G-~Y~lnI~l~fPv~~f~GtKsi~Ltt~SviGgkN~ 330 (372)
T COG5035 254 G--YTDDNIPDLSTWEEFQNWMRTAAFPKFSKLAMRNVNDVLPPG-TYQLNITLNFPVLEFNGTKSIVLTTNSVIGGKNY 330 (372)
T ss_pred C--CCccCCCcchhHHHHHHHhhcccCchHHHHhcccccccCCCc-eEEEEEEeecceeecCCceEEEEEecccccCCCc
Confidence 4 3466676 5799999999999999999999999776 47777 5999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccCCC
Q 046680 296 FLGIAYITVGGLCLFLAISFILVYVVMPRPLGDPAFLSWNRH 337 (343)
Q Consensus 296 ~Lgi~ylvvG~i~~i~~i~f~~~~~~~~r~~gd~~~L~w~~~ 337 (343)
||||+||||||+|.++|++|++.++++||++||++||+|+++
T Consensus 331 fLGI~ylivg~ical~~~if~~~~~f~pR~~~Dh~yLnw~~~ 372 (372)
T COG5035 331 FLGIVYLIVGGICALLGLIFLIKWLFKPRKMADHSYLNWNME 372 (372)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhCCcccCCcccccccCC
Confidence 999999999999999999999999999999999999999974
No 3
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=100.00 E-value=7.1e-84 Score=613.51 Aligned_cols=261 Identities=50% Similarity=0.832 Sum_probs=226.8
Q ss_pred hhhhcCCeEEEEEcCCCCCCCCCCCCccceeeecCCCCceeEEEEEecCCCCCceEEEEEecchhhhhhhhhcCCCcccc
Q 046680 59 SLFASENVVEIVDRYDEGCIPPNYSDDMLAYIQNSDTNKTCTRSLKATKLMKSPVYIYYQLDNFYQNHRRYVKSRNDKQL 138 (343)
Q Consensus 59 l~~~s~~~~E~~i~Y~~~c~~~~~~~~~~~~~~~~~~~~~C~i~f~i~~~m~~pVyvYY~L~nFyQNHR~y~~Srs~~QL 138 (343)
|++++++++|++++||+.|...... ........++|.++|+||++|++||||||||+|||||||||++|||++||
T Consensus 1 ll~~s~~v~E~~~~Yd~~~~~~~~~-----~~~~~~~~~~c~v~f~i~~~~~~pVyvYY~L~nFYQNhr~y~~S~~~~QL 75 (278)
T PF03381_consen 1 LLVASNSVVEIEIRYDDCCDCQNCY-----INEFSPIPCTCSVTFNIPEDMKGPVYVYYELTNFYQNHRRYVKSRSDSQL 75 (278)
T ss_pred CEEEeCCEEEEEEECCCCCCCCCcc-----ccccCCCCceEEEEEEcCccCCCCEEEEEEEehhhHHhHHHHhcCCHHHh
Confidence 5678999999999999987653310 00111224589999999999999999999999999999999999999999
Q ss_pred CCCCCCCC-CCCCCccccc---CCceeeechhhhhccccceeeccc----cCeeeeeeccccCCccccccccCCCC----
Q 046680 139 WSKKHEDE-TKNCAPEATS---NGLSIVPCGLIAWSLFNDSYGFSI----KNKMVKVSKKNIAWESDKKHKFGSDV---- 206 (343)
Q Consensus 139 ~G~~~~~~-~~~C~P~~~~---~g~~i~PCGliA~S~FNDtF~l~~----~~~~i~~~~~gIaw~sD~~~kF~~~~---- 206 (343)
+|+..+.+ .++|+|+++. ++++++||||+|||||||||+|.. .++.++++++||||++|++.+|+++.
T Consensus 76 ~G~~~~~~~~~~C~p~~~~~~~~~~~~~PCGliA~S~FNDtF~l~~~~~~~~~~~~~~~~gIaw~~d~~~~fk~~~~~~~ 155 (278)
T PF03381_consen 76 KGKIVSKSDLSDCDPLRTNNENNGKIIYPCGLIANSMFNDTFSLYRRNSGNNENIPLDETGIAWSSDRESKFKNPHYNNS 155 (278)
T ss_pred CCCccccCCCCCCCCceeccCCCCCEeecccHhHhhhccceEEeeecccCCCceeeeecccccCchHHHHhcCCCCCccc
Confidence 99985433 3799999986 889999999999999999999973 35679999999999999988999843
Q ss_pred ---CCCCCCCCcccCCcccCCCCCCc-chhhHHHHHhcCCCCchhhhhhcc-cccCCCCceEEEEEEeeecccccCceEE
Q 046680 207 ---YPKNFQNGVLIGGGKLNSSIPLS-KQEALIVWMRTAALPTFRKLYGRI-ESDIQANDSVTVIIENNYNTYSFGGKKK 281 (343)
Q Consensus 207 ---~p~~~~~~~~~~~~~~~~~~~~~-~ne~FivWMr~Aalp~FrKLYg~i-~~~l~~g~~y~v~I~n~ypv~~F~G~K~ 281 (343)
+|++|... .+.+...|.. +|||||||||+||||+||||||+| +++|++|+ |+|+|+|||||+.|+|+|+
T Consensus 156 ~~~~~~~W~~~-----~~~~~~~p~~~~ne~fivWMr~a~lp~FrKLYg~i~~~~L~~G~-y~i~I~nnypv~~f~G~K~ 229 (278)
T PF03381_consen 156 NTVPPPNWRPG-----YENDTPWPDNSENEHFIVWMRPAALPTFRKLYGRIDNDDLPAGN-YTIDITNNYPVSSFGGKKS 229 (278)
T ss_pred cccCCCceeee-----ccCCCCCCcccccHHHHHHhccccCCCeeEeEeeeccCCCCCce-EEEEEEEeecccccCcEEE
Confidence 36667321 1233334443 699999999999999999999999 88999996 9999999999999999999
Q ss_pred EEEEeccccCccCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 046680 282 LVLSTTTWIGGKNDFLGIAYITVGGLCLFLAISFILVYVVMPRPLGDPA 330 (343)
Q Consensus 282 ivlst~s~~GgkN~~Lgi~ylvvG~i~~i~~i~f~~~~~~~~r~~gd~~ 330 (343)
|||+|+||+||||+|||++||++|++|+++|++|++.|+++||++||++
T Consensus 230 ivlst~s~~Ggkn~~Lgi~ylvvg~i~~v~~i~~~~~~~~~~r~~gD~~ 278 (278)
T PF03381_consen 230 IVLSTTSWFGGKNYFLGIAYLVVGGICLVLAIIFLIIHYFKPRKLGDTS 278 (278)
T ss_pred EEEEeccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999985
No 4
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=78.98 E-value=1.8 Score=36.78 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 046680 299 IAYITVGGLCLFLAISFILVYVVMP 323 (343)
Q Consensus 299 i~ylvvG~i~~i~~i~f~~~~~~~~ 323 (343)
|+.|++|+++-++++++++.++.++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665543
No 5
>COG1470 Predicted membrane protein [Function unknown]
Probab=60.44 E-value=37 Score=35.18 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=36.6
Q ss_pred ccCCCCceEEEEEEeeecccccCceEEEEEEeccccCccCcchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 046680 255 SDIQANDSVTVIIENNYNTYSFGGKKKLVLSTTTWIGGKNDFLGIAYITVGGLCLFLAISFILVYVVMPR 324 (343)
Q Consensus 255 ~~l~~g~~y~v~I~n~ypv~~F~G~K~ivlst~s~~GgkN~~Lgi~ylvvG~i~~i~~i~f~~~~~~~~r 324 (343)
.+-.+|+ |.+.|+-.=+..++..+=.+++-+.|-- +|+.++.|.++++.++++++-+.+|
T Consensus 454 ~~a~aGd-Y~i~i~~ksDq~s~e~tlrV~V~~sS~s---------t~iGI~Ii~~~v~~L~fviRK~GRR 513 (513)
T COG1470 454 EDAGAGD-YRITITAKSDQASSEDTLRVVVGQSSTS---------TYIGIAIIVLVVLGLIFVIRKFGRR 513 (513)
T ss_pred CCCCCCc-EEEEEEEeeccccccceEEEEEeccccc---------hhhhHHHHHHHHHHHHhhhHHhcCC
Confidence 3456775 7888876667777777766777665532 3444555555555555665555444
No 6
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=55.51 E-value=12 Score=32.17 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=34.2
Q ss_pred HhcCCCCchhhhhhcccccCCCCceEEEEEEeeecccccCceEEEEEEe
Q 046680 238 MRTAALPTFRKLYGRIESDIQANDSVTVIIENNYNTYSFGGKKKLVLST 286 (343)
Q Consensus 238 Mr~Aalp~FrKLYg~i~~~l~~g~~y~v~I~n~ypv~~F~G~K~ivlst 286 (343)
|+.|+-++|.=.-..=++.|++|+ |++.++-...-..|.-+|.|.|+.
T Consensus 84 ~~mAPNS~f~~~i~~~~~~lk~G~-Y~l~~~~~~~~~~W~f~k~F~It~ 131 (140)
T PF11797_consen 84 MQMAPNSNFNFPIPLGGKKLKPGK-YTLKITAKSGKKTWTFTKDFTITA 131 (140)
T ss_pred CEECCCCeEEeEecCCCcCccCCE-EEEEEEEEcCCcEEEEEEEEEECH
Confidence 456666666532221235788985 999999888888888899998864
No 7
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=50.81 E-value=23 Score=28.37 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=22.4
Q ss_pred cCccCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046680 290 IGGKNDFLGIAYITVGGLCLFLAISFILVYVVM 322 (343)
Q Consensus 290 ~GgkN~~Lgi~ylvvG~i~~i~~i~f~~~~~~~ 322 (343)
+|..-.-||+.|+++.++.+++.+++++....+
T Consensus 26 ~~n~~~~Lgm~~lvI~~iFil~VilwfvCC~kR 58 (94)
T PF05393_consen 26 FVNNWPNLGMWFLVICGIFILLVILWFVCCKKR 58 (94)
T ss_pred ecCCCCccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455788999999888766666666555443
No 8
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=48.45 E-value=19 Score=29.36 Aligned_cols=36 Identities=19% Similarity=0.614 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccCCC
Q 046680 297 LGIAYITVGGLCLFLAISFILVYVVMPRPLGDPAFLSWNRH 337 (343)
Q Consensus 297 Lgi~ylvvG~i~~i~~i~f~~~~~~~~r~~gd~~~L~w~~~ 337 (343)
+-.+.+++| +.+++|+..++..... |-..||||.++
T Consensus 4 ~~~vl~l~g-~llligftivvl~vyf----grk~ylswakp 39 (126)
T PF13120_consen 4 IKMVLLLIG-TLLLIGFTIVVLLVYF----GRKFYLSWAKP 39 (126)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhhhee----cceeeeeecCh
Confidence 344445444 4445555444444333 44569999874
No 9
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=45.29 E-value=33 Score=29.07 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 046680 295 DFLGIAYITVGGLCLFLAISFILVYVVMPRP 325 (343)
Q Consensus 295 ~~Lgi~ylvvG~i~~i~~i~f~~~~~~~~r~ 325 (343)
--.||+|-||+|+.+++.+++++++..++|.
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3588999998888888888777777666654
No 10
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=40.04 E-value=37 Score=28.40 Aligned_cols=24 Identities=21% Similarity=0.510 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Q 046680 39 GYVIGIFIIVGVIFIPVGIISLFA 62 (343)
Q Consensus 39 ~~vi~~f~~igiifi~iGi~l~~~ 62 (343)
.....+++++|++++.+|++++..
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566788899999999888775
No 11
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=38.89 E-value=7.3 Score=32.59 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=1.6
Q ss_pred ccCceEEEEEEeccccCccCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 046680 275 SFGGKKKLVLSTTTWIGGKNDFLGIAYITVGGLCLFLAISFILVYVVMPRPLG 327 (343)
Q Consensus 275 ~F~G~K~ivlst~s~~GgkN~~Lgi~ylvvG~i~~i~~i~f~~~~~~~~r~~g 327 (343)
.|.|+..-.|+..--.| +|.+.+|+|+++++-.|+++|+-|
T Consensus 12 ~~kg~~~syitAEEAaG------------IGiL~VILgiLLliGCWYckRRSG 52 (118)
T PF14991_consen 12 PFKGKGHSYITAEEAAG------------IGILIVILGILLLIGCWYCKRRSG 52 (118)
T ss_dssp ----------------S------------SS----------------------
T ss_pred ccccCCcceeeHHHhcc------------ceeHHHHHHHHHHHhheeeeecch
Confidence 46777777776655543 577777888888888888877554
No 12
>PF12669 P12: Virus attachment protein p12 family
Probab=35.59 E-value=27 Score=25.60 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Q 046680 303 TVGGLCLFLAISFILVYVVMPRPLG 327 (343)
Q Consensus 303 vvG~i~~i~~i~f~~~~~~~~r~~g 327 (343)
+||+|.+++++..++.++++.++-|
T Consensus 3 II~~Ii~~~~~~v~~r~~~k~~K~G 27 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFIKDKKKG 27 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4565544444433446677666655
No 13
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=33.62 E-value=88 Score=26.49 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=17.5
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhh
Q 046680 33 KPILTPGYVIGIFIIVGVIFIPVGIISLF 61 (343)
Q Consensus 33 ~p~~tp~~vi~~f~~igiifi~iGi~l~~ 61 (343)
|+-+.......+++++|++.+.+|.+++.
T Consensus 45 r~P~k~i~lavvL~~fg~Lli~lg~fl~~ 73 (124)
T KOG4753|consen 45 RHPVKEIALAVVLLVFGLLLIGLGFFLAG 73 (124)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 33343444455667778877777766654
No 14
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.50 E-value=28 Score=29.32 Aligned_cols=24 Identities=17% Similarity=0.186 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Q 046680 39 GYVIGIFIIVGVIFIPVGIISLFA 62 (343)
Q Consensus 39 ~~vi~~f~~igiifi~iGi~l~~~ 62 (343)
+|++.++|++++++++++..+.-.
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHH
Confidence 356666666565555555555443
No 15
>PF10204 DuoxA: Dual oxidase maturation factor; InterPro: IPR018469 DuoxA (Dual oxidase maturation factor) is the essential protein necessary for the final release of DUOX2 (an NADPH:O2 oxidoreductase flavoprotein) from the endoplasmic reticulum. Dual oxidases (DUOX1 and DUOX2) constitute the catalytic core of the hydrogen peroxide generator, which generates H2O2 at the apical membrane of thyroid follicular cells, essential for iodination of thyroglobulin by thyroid peroxidases. DuoxA carries five membrane-integral regions including a reverse signal-anchor with external N terminus (type III) and two N-glycosylation sites []. It is conserved from nematodes to humans.; GO: 0015031 protein transport, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=32.22 E-value=37 Score=32.83 Aligned_cols=33 Identities=27% Similarity=0.538 Sum_probs=26.4
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 046680 292 GKNDFLGIAYITVGGLCLFLAISFILVYVVMPRPLG 327 (343)
Q Consensus 292 gkN~~Lgi~ylvvG~i~~i~~i~f~~~~~~~~r~~g 327 (343)
|.+.+|- ++.|.+|+++|++.+++++..|.++.
T Consensus 239 G~~Fwl~---LatGiLc~l~G~~i~~ld~~~p~~l~ 271 (281)
T PF10204_consen 239 GWCFWLT---LATGILCLLLGLIIVFLDYIRPHKLS 271 (281)
T ss_pred ccHHHHH---HHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 3555543 77999999999999999999997653
No 16
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=32.02 E-value=1e+02 Score=26.15 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 046680 298 GIAYITVGGLCLFLAISFILVYVVMPRP 325 (343)
Q Consensus 298 gi~ylvvG~i~~i~~i~f~~~~~~~~r~ 325 (343)
++..+++|.+.+++|++.++.++.++++
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~l~~~~~~~ 112 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYIILGFFCPIK 112 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7777889999999999999999998876
No 17
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=31.87 E-value=60 Score=26.98 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=16.5
Q ss_pred hhHHHHHHHHH---HHHHHHHHHhhhh
Q 046680 38 PGYVIGIFIIV---GVIFIPVGIISLF 61 (343)
Q Consensus 38 p~~vi~~f~~i---giifi~iGi~l~~ 61 (343)
..++..+++++ |++|+++|+.+++
T Consensus 121 ~~~~~~~~~~~~~lG~~~~~~gl~~~v 147 (148)
T PF12158_consen 121 GLWLMFIFGFGFILGLIFFLVGLFMLV 147 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555544 8899999988765
No 18
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=30.12 E-value=72 Score=26.81 Aligned_cols=29 Identities=21% Similarity=0.513 Sum_probs=16.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 046680 33 KPILTPGYVIGIFIIVGVIFIPVGIISLFA 62 (343)
Q Consensus 33 ~p~~tp~~vi~~f~~igiifi~iGi~l~~~ 62 (343)
.|..+|.++. +..+--++|.|||++++..
T Consensus 4 ~~~~~~a~Ia-~mVlGFi~fWPlGla~Lay 32 (115)
T PF11014_consen 4 DPRWKPAWIA-AMVLGFIVFWPLGLALLAY 32 (115)
T ss_pred CCCCchHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3444555532 2222237788999887754
No 19
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=29.73 E-value=47 Score=27.81 Aligned_cols=27 Identities=11% Similarity=0.232 Sum_probs=17.2
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHH
Q 046680 293 KNDFLGIAYITVGGLCLFLAISFILVY 319 (343)
Q Consensus 293 kN~~Lgi~ylvvG~i~~i~~i~f~~~~ 319 (343)
|-..|+++.+++|.++++++++.++.+
T Consensus 42 K~I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 42 KSIALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445666777777777666666655544
No 20
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=28.34 E-value=63 Score=23.13 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 046680 299 IAYITVGGLCLFLAISFILVYVVMPR 324 (343)
Q Consensus 299 i~ylvvG~i~~i~~i~f~~~~~~~~r 324 (343)
+++++|+.++++.-+.+++.+..+..
T Consensus 2 ~~~~iV~i~iv~~lLg~~I~~~~K~y 27 (50)
T PF12606_consen 2 IAFLIVSIFIVMGLLGLSICTTLKAY 27 (50)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35778888887777777777766653
No 21
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=26.84 E-value=1.1e+02 Score=22.31 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhhhcCCeE
Q 046680 49 GVIFIPVGIISLFASENVV 67 (343)
Q Consensus 49 giifi~iGi~l~~~s~~~~ 67 (343)
-++++.+|+++++.+++-.
T Consensus 33 mimylilGi~L~yis~~~~ 51 (54)
T PF04835_consen 33 MIMYLILGIALIYISSNDD 51 (54)
T ss_pred HHHHHHHHHHHhhhccCcc
Confidence 3778899999998887643
No 22
>PRK02935 hypothetical protein; Provisional
Probab=26.17 E-value=85 Score=26.03 Aligned_cols=68 Identities=12% Similarity=0.253 Sum_probs=37.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhh--cCCeEEEEEcCCCCCCCCCCCCccceeeecCCCCc-eeEEEEEecCCCCCc
Q 046680 37 TPGYVIGIFIIVGVIFIPVGIISLFA--SENVVEIVDRYDEGCIPPNYSDDMLAYIQNSDTNK-TCTRSLKATKLMKSP 112 (343)
Q Consensus 37 tp~~vi~~f~~igiifi~iGi~l~~~--s~~~~E~~i~Y~~~c~~~~~~~~~~~~~~~~~~~~-~C~i~f~i~~~m~~p 112 (343)
+..+++.+|+++|++++..+.++++- -.+..-+.+.=-+ |.... -.-...+-+ .|.-..++++++.++
T Consensus 35 ~~~~~m~ifm~~G~l~~l~S~vvYFwiGmlStkavqV~CP~-C~K~T-------KmLGrvD~CM~C~~PLTLd~~legk 105 (110)
T PRK02935 35 ESIIIMTIFMLLGFLAVIASTVVYFWIGMLSTKAVQVICPS-CEKPT-------KMLGRVDACMHCNQPLTLDRSLEGK 105 (110)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccceeeECCC-CCchh-------hhccceeecCcCCCcCCcCcccccc
Confidence 46678889999999998877766643 2333333332222 32110 000001122 477777887776664
No 23
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=25.71 E-value=71 Score=30.49 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Q 046680 40 YVIGIFIIVGVIFIPVGIISLFAS 63 (343)
Q Consensus 40 ~vi~~f~~igiifi~iGi~l~~~s 63 (343)
.-.++|+++|++|+++|+.+.+..
T Consensus 196 kR~i~f~llgllfliiaigltvGT 219 (256)
T PF09788_consen 196 KRAIIFFLLGLLFLIIAIGLTVGT 219 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Confidence 346789999999999999887543
No 24
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=25.21 E-value=56 Score=30.15 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 046680 299 IAYITVGGLCLFLAISFILVYVVMPR 324 (343)
Q Consensus 299 i~ylvvG~i~~i~~i~f~~~~~~~~r 324 (343)
|+.+++|++|+++++...+.++.++|
T Consensus 103 I~lv~~g~~lLla~~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 103 IALVTSGSFLLLAILLGAGYCCHQRR 128 (202)
T ss_pred EehHHhhHHHHHHHHHHHHHHhhhhc
Confidence 45567787777776666554444443
No 25
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=24.77 E-value=53 Score=31.73 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 046680 302 ITVGGLCLFLAISFILVYVVMPRP 325 (343)
Q Consensus 302 lvvG~i~~i~~i~f~~~~~~~~r~ 325 (343)
|+||+...++.++.++.|++.+|+
T Consensus 275 IaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 275 IAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred HHHHHHHHHHHHHHHHhheeEecc
Confidence 447777666666667777776554
No 26
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.65 E-value=71 Score=26.85 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=2.8
Q ss_pred cccccCC
Q 046680 330 AFLSWNR 336 (343)
Q Consensus 330 ~~L~w~~ 336 (343)
..=.|-.
T Consensus 35 ~gt~w~~ 41 (130)
T PF12273_consen 35 YGTRWMA 41 (130)
T ss_pred CCceecC
Confidence 3334443
No 27
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=23.51 E-value=1.1e+02 Score=26.11 Aligned_cols=25 Identities=4% Similarity=0.063 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 046680 299 IAYITVGGLCLFLAISFILVYVVMP 323 (343)
Q Consensus 299 i~ylvvG~i~~i~~i~f~~~~~~~~ 323 (343)
++-|+.+++|+++|++++..-+...
T Consensus 37 ysiL~Ls~vvlvi~~~LLgrsi~AN 61 (125)
T PF15048_consen 37 YSILALSFVVLVISFFLLGRSIQAN 61 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 4668888999999999988877743
No 28
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=23.35 E-value=15 Score=32.37 Aligned_cols=10 Identities=30% Similarity=0.508 Sum_probs=6.6
Q ss_pred ccCcchhHHH
Q 046680 292 GKNDFLGIAY 301 (343)
Q Consensus 292 gkN~~Lgi~y 301 (343)
.||..+|++-
T Consensus 47 nknIVIGvVV 56 (154)
T PF04478_consen 47 NKNIVIGVVV 56 (154)
T ss_pred CccEEEEEEe
Confidence 3567788763
No 29
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=22.38 E-value=71 Score=22.89 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 046680 297 LGIAYITVGGLCLFLAISFILVY 319 (343)
Q Consensus 297 Lgi~ylvvG~i~~i~~i~f~~~~ 319 (343)
|-+.=|+++++.|++|+++++..
T Consensus 14 LrigGLi~A~vlfi~Gi~iils~ 36 (50)
T PF02038_consen 14 LRIGGLIFAGVLFILGILIILSG 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhccchHHHHHHHHHHHHHHHcC
Confidence 34444778888888888777655
No 30
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=22.09 E-value=73 Score=21.94 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 046680 300 AYITVGGLCLFLAISFILVYVVM 322 (343)
Q Consensus 300 ~ylvvG~i~~i~~i~f~~~~~~~ 322 (343)
+|++||...+.+...|+...|..
T Consensus 13 VF~lVglv~i~iva~~iYRKw~a 35 (43)
T PF08114_consen 13 VFCLVGLVGIGIVALFIYRKWQA 35 (43)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHH
Confidence 45666766666655566655553
No 31
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=21.28 E-value=93 Score=24.36 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCeE
Q 046680 44 IFIIVGVIFIPVGIISLFASENVV 67 (343)
Q Consensus 44 ~f~~igiifi~iGi~l~~~s~~~~ 67 (343)
+++.+|++++++|.++++......
T Consensus 4 ~~Fl~~l~lliig~~~~v~~~GfF 27 (92)
T PF13038_consen 4 ILFLVGLILLIIGGFLFVFQSGFF 27 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCch
Confidence 355778888888888888766543
No 32
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=20.83 E-value=3.2e+02 Score=30.70 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=29.4
Q ss_pred cCCCCceEEEEEEeeecc--cccCceEEEEEEecc-----ccCccCcchhHHHHHHHHHHHHHHHH
Q 046680 256 DIQANDSVTVIIENNYNT--YSFGGKKKLVLSTTT-----WIGGKNDFLGIAYITVGGLCLFLAIS 314 (343)
Q Consensus 256 ~l~~g~~y~v~I~n~ypv--~~F~G~K~ivlst~s-----~~GgkN~~Lgi~ylvvG~i~~i~~i~ 314 (343)
.|.+|+.|.|.|--+-+. -.|+++-. +.|.. -.|+...+++++ +++|++.++++++
T Consensus 504 gL~p~t~YvfqVRarT~aG~G~~S~~~~--fqT~~~~~~~~~~~~l~~i~g~-~~~~v~~lll~~v 566 (996)
T KOG0196|consen 504 GLKPGTVYVFQVRARTAAGYGPYSGKHE--FQTLPSESSSQSGEQLPLIIGS-ILAGVVFLLLAAV 566 (996)
T ss_pred ccCCCcEEEEEEEEecccCCCCCCCcee--eeecCcccccccccchhhHHHH-HHHHHHHHHHHHH
Confidence 589999999999776332 23433333 33332 344444444443 4444444444443
No 33
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=20.54 E-value=1.2e+02 Score=25.36 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhc--CCeEEEEEcCCCCCCCCCCCCccceeeecCCCCc-eeEEEEEecCCCCCc
Q 046680 38 PGYVIGIFIIVGVIFIPVGIISLFAS--ENVVEIVDRYDEGCIPPNYSDDMLAYIQNSDTNK-TCTRSLKATKLMKSP 112 (343)
Q Consensus 38 p~~vi~~f~~igiifi~iGi~l~~~s--~~~~E~~i~Y~~~c~~~~~~~~~~~~~~~~~~~~-~C~i~f~i~~~m~~p 112 (343)
-.+++.+|+++|++++..+.++++.. .+..-+.+.=-+ |.. ..-.-...+.+ .|.-..++++++.+.
T Consensus 35 ~~~im~ifmllG~L~~l~S~~VYfwIGmlStkav~V~CP~-C~K-------~TKmLGr~D~CM~C~~pLTLd~~legk 104 (114)
T PF11023_consen 35 SPIIMVIFMLLGLLAILASTAVYFWIGMLSTKAVQVECPN-CGK-------QTKMLGRVDACMHCKEPLTLDPSLEGK 104 (114)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeECCC-CCC-------hHhhhchhhccCcCCCcCccCchhhcc
Confidence 35678899999998888877766432 333333333221 321 11000001122 477788888877664
Done!