Query 046680
Match_columns 343
No_of_seqs 115 out of 521
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:18:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 66.8 12 0.0004 25.1 5.0 31 295-325 8-38 (44)
2 2ks1_B Epidermal growth factor 61.9 6.5 0.00022 26.4 3.0 30 296-325 10-39 (44)
3 2jwa_A Receptor tyrosine-prote 39.8 36 0.0012 22.8 3.8 31 294-324 9-39 (44)
4 2k9y_A Ephrin type-A receptor 33.2 48 0.0017 21.1 3.6 21 298-318 14-34 (41)
5 2k1k_A Ephrin type-A receptor 30.8 79 0.0027 20.2 4.3 24 299-322 13-36 (38)
6 2jo1_A Phospholemman; FXYD1, N 26.7 51 0.0017 24.2 3.1 26 296-321 15-40 (72)
7 2jp3_A FXYD domain-containing 23.6 32 0.0011 25.0 1.5 23 297-319 17-39 (67)
8 2l8s_A Integrin alpha-1; trans 19.4 2.3E+02 0.008 19.6 5.4 25 295-319 8-32 (54)
9 3mp7_B Preprotein translocase 18.9 1.1E+02 0.0038 21.7 3.5 22 296-317 36-57 (61)
10 1afo_A Glycophorin A; integral 18.4 1.2E+02 0.004 19.7 3.2 25 298-322 11-35 (40)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=66.84 E-value=12 Score=25.14 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=21.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 046680 295 DFLGIAYITVGGLCLFLAISFILVYVVMPRP 325 (343)
Q Consensus 295 ~~Lgi~ylvvG~i~~i~~i~f~~~~~~~~r~ 325 (343)
...+|+=-|+|++.+++.+++++..+.+.|+
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 3456888888888887777766666665554
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=61.91 E-value=6.5 Score=26.41 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 046680 296 FLGIAYITVGGLCLFLAISFILVYVVMPRP 325 (343)
Q Consensus 296 ~Lgi~ylvvG~i~~i~~i~f~~~~~~~~r~ 325 (343)
..+|+--|+|++.+++.+++++..+.+.|+
T Consensus 10 ~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cceEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 445777888988887777766666665554
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=39.77 E-value=36 Score=22.77 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=18.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 046680 294 NDFLGIAYITVGGLCLFLAISFILVYVVMPR 324 (343)
Q Consensus 294 N~~Lgi~ylvvG~i~~i~~i~f~~~~~~~~r 324 (343)
.....|+=.++|.+++++..+.++.++.++|
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhheehhh
Confidence 3445677788886655555544455544433
No 4
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=33.22 E-value=48 Score=21.08 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 046680 298 GIAYITVGGLCLFLAISFILV 318 (343)
Q Consensus 298 gi~ylvvG~i~~i~~i~f~~~ 318 (343)
+|+--+++++.+++++++++.
T Consensus 14 ~I~~~vv~Gv~ll~~iv~~~~ 34 (41)
T 2k9y_A 14 AVIGGVAVGVVLLLVLAGVGF 34 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehhHHHHHHHHHHHHhe
Confidence 455555667766554444433
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=30.76 E-value=79 Score=20.23 Aligned_cols=24 Identities=25% Similarity=0.105 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 046680 299 IAYITVGGLCLFLAISFILVYVVM 322 (343)
Q Consensus 299 i~ylvvG~i~~i~~i~f~~~~~~~ 322 (343)
|+=+++|++.-++.+..++..+.+
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeeehHHHHHHHHHHHHHHHHee
Confidence 455666666544433333333333
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=26.67 E-value=51 Score=24.24 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Q 046680 296 FLGIAYITVGGLCLFLAISFILVYVV 321 (343)
Q Consensus 296 ~Lgi~ylvvG~i~~i~~i~f~~~~~~ 321 (343)
.|-+.=|+++++.|++||++++..-.
T Consensus 15 tLRiGGLifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 15 SLQIGGLVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHHHcCcc
Confidence 34455578899999999998887733
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=23.60 E-value=32 Score=25.02 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 046680 297 LGIAYITVGGLCLFLAISFILVY 319 (343)
Q Consensus 297 Lgi~ylvvG~i~~i~~i~f~~~~ 319 (343)
|-+.=|+++++.|++||++++..
T Consensus 17 LRigGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred heecchhhHHHHHHHHHHHHHcC
Confidence 44455788899999999888776
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=19.42 E-value=2.3e+02 Score=19.58 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=12.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Q 046680 295 DFLGIAYITVGGLCLFLAISFILVY 319 (343)
Q Consensus 295 ~~Lgi~ylvvG~i~~i~~i~f~~~~ 319 (343)
+..-|+--++||+.+++.+++++..
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455666655555554443
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=18.86 E-value=1.1e+02 Score=21.68 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 046680 296 FLGIAYITVGGLCLFLAISFIL 317 (343)
Q Consensus 296 ~Lgi~ylvvG~i~~i~~i~f~~ 317 (343)
..++.++++|.+.+++-+++.+
T Consensus 36 ~~~iG~~i~G~iGf~Ikli~~~ 57 (61)
T 3mp7_B 36 ITGLGIILIGLIGMLIRIVGIL 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677778887777666544
No 10
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=18.43 E-value=1.2e+02 Score=19.74 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 046680 298 GIAYITVGGLCLFLAISFILVYVVM 322 (343)
Q Consensus 298 gi~ylvvG~i~~i~~i~f~~~~~~~ 322 (343)
-++.++.|..+-+++.++++.+..+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777888888777554
Done!