Query 046680
Match_columns 343
No_of_seqs 115 out of 521
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 05:19:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046680.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046680hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x4la1 g.39.1.3 (A:8-36) Four 35.0 3 0.00022 23.9 -0.4 19 272-290 7-25 (29)
2 d1x68a1 g.39.1.3 (A:8-36) Four 33.5 5.2 0.00038 22.8 0.4 18 272-289 7-24 (29)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 17.7 81 0.0059 17.3 3.7 18 306-323 9-26 (30)
4 d2h80a1 a.60.1.3 (A:11-81) Del 13.6 22 0.0016 24.3 0.3 22 231-252 11-32 (71)
5 d2dkya1 a.60.1.3 (A:8-85) Dele 11.9 28 0.002 24.1 0.5 22 231-252 16-37 (78)
6 d2eppa1 g.37.1.1 (A:286-338) P 11.5 28 0.002 22.1 0.3 19 160-179 5-23 (53)
7 d1nekc_ f.21.2.2 (C:) Succinat 10.8 1.3E+02 0.0098 21.9 4.4 12 45-56 36-47 (129)
8 d1rh5b_ f.23.28.1 (B:) Preprot 9.8 1.4E+02 0.01 19.2 3.5 19 298-316 31-49 (56)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 9.7 1.7E+02 0.013 20.3 4.5 28 298-325 31-58 (100)
10 d2vkwa2 b.1.2.1 (A:601-693) Ne 9.4 1.8E+02 0.013 18.8 4.5 16 255-270 61-76 (93)
No 1
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.04 E-value=3 Score=23.89 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=16.4
Q ss_pred cccccCceEEEEEEecccc
Q 046680 272 NTYSFGGKKKLVLSTTTWI 290 (343)
Q Consensus 272 pv~~F~G~K~ivlst~s~~ 290 (343)
|...|+|.|+|-+....|-
T Consensus 7 PItg~gg~kyisFE~R~WH 25 (29)
T d1x4la1 7 PISGLGGTKYISFEERQWH 25 (29)
T ss_dssp CCCCSSSCSCEECSSCEEC
T ss_pred cccccCCceEEEeeccccc
Confidence 7889999999999888773
No 2
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.48 E-value=5.2 Score=22.83 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=15.5
Q ss_pred cccccCceEEEEEEeccc
Q 046680 272 NTYSFGGKKKLVLSTTTW 289 (343)
Q Consensus 272 pv~~F~G~K~ivlst~s~ 289 (343)
|...++|.|+|-+....|
T Consensus 7 PItg~gG~k~isFedR~W 24 (29)
T d1x68a1 7 PISGLTGAKFICFQDSQW 24 (29)
T ss_dssp CCCTTTTCCEEEETTEEE
T ss_pred cccccCCceEEEeehhhc
Confidence 788899999999887766
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.68 E-value=81 Score=17.34 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 046680 306 GLCLFLAISFILVYVVMP 323 (343)
Q Consensus 306 ~i~~i~~i~f~~~~~~~~ 323 (343)
.+.++++++|+.+.+.-|
T Consensus 9 ifac~i~lfffaiffrep 26 (30)
T d2axtt1 9 IFACIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 355667777777666544
No 4
>d2h80a1 a.60.1.3 (A:11-81) Deleted in Liver Cancer 2, DLC2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.58 E-value=22 Score=24.28 Aligned_cols=22 Identities=27% Similarity=0.717 Sum_probs=17.5
Q ss_pred hhhHHHHHhcCCCCchhhhhhc
Q 046680 231 QEALIVWMRTAALPTFRKLYGR 252 (343)
Q Consensus 231 ne~FivWMr~Aalp~FrKLYg~ 252 (343)
--+=--|.|.|+||-+-.||.-
T Consensus 11 A~eAC~WLraaGFpqYAqlyEd 32 (71)
T d2h80a1 11 AKEACDWLRAAGFPQYAQLYED 32 (71)
T ss_dssp HHHHHHHHHHTTCHHHHHTTTT
T ss_pred HHHHHHHHHHcCChHHHHHhhh
Confidence 3444579999999999998864
No 5
>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.90 E-value=28 Score=24.13 Aligned_cols=22 Identities=23% Similarity=0.690 Sum_probs=17.6
Q ss_pred hhhHHHHHhcCCCCchhhhhhc
Q 046680 231 QEALIVWMRTAALPTFRKLYGR 252 (343)
Q Consensus 231 ne~FivWMr~Aalp~FrKLYg~ 252 (343)
--+=--|.|.|+||-+-.||.-
T Consensus 16 A~eAC~WLraaGFpqYAqlyEd 37 (78)
T d2dkya1 16 AKEACDWLRATGFPQYAQLYED 37 (78)
T ss_dssp HHHHHHHHHHHTCTTHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHhhc
Confidence 3444579999999999999863
No 6
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.49 E-value=28 Score=22.07 Aligned_cols=19 Identities=37% Similarity=0.812 Sum_probs=15.1
Q ss_pred eeeechhhhhccccceeecc
Q 046680 160 SIVPCGLIAWSLFNDSYGFS 179 (343)
Q Consensus 160 ~i~PCGliA~S~FNDtF~l~ 179 (343)
.++|||+--. +|.|.-.|.
T Consensus 5 ~l~pCG~CgK-~Ftd~~rLr 23 (53)
T d2eppa1 5 GILPCGLCGK-VFTDANRLR 23 (53)
T ss_dssp CCCCCTTTCC-CCSCHHHHH
T ss_pred ceeecccccc-ccCCHHHHh
Confidence 4799999865 899987764
No 7
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=10.80 E-value=1.3e+02 Score=21.88 Aligned_cols=12 Identities=17% Similarity=-0.034 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 046680 45 FIIVGVIFIPVG 56 (343)
Q Consensus 45 f~~igiifi~iG 56 (343)
.+.+|+.++...
T Consensus 36 ~l~~~~~~~~~~ 47 (129)
T d1nekc_ 36 ITFVAVGILLWL 47 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.77 E-value=1.4e+02 Score=19.19 Aligned_cols=19 Identities=5% Similarity=0.148 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 046680 298 GIAYITVGGLCLFLAISFI 316 (343)
Q Consensus 298 gi~ylvvG~i~~i~~i~f~ 316 (343)
|+-++++|.+-+++-+++.
T Consensus 31 ~iG~~i~G~IGf~I~li~~ 49 (56)
T d1rh5b_ 31 ALGISLLGIIGYIIHVPAT 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666777666655443
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.74 E-value=1.7e+02 Score=20.25 Aligned_cols=28 Identities=11% Similarity=0.001 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 046680 298 GIAYITVGGLCLFLAISFILVYVVMPRP 325 (343)
Q Consensus 298 gi~ylvvG~i~~i~~i~f~~~~~~~~r~ 325 (343)
.+..++++.+.++.++++.+...++.|+
T Consensus 31 ~v~~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 31 FILVIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 3444555555556665555555555444
No 10
>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.39 E-value=1.8e+02 Score=18.79 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=13.4
Q ss_pred ccCCCCceEEEEEEee
Q 046680 255 SDIQANDSVTVIIENN 270 (343)
Q Consensus 255 ~~l~~g~~y~v~I~n~ 270 (343)
.+|.+|..|.|.|.-.
T Consensus 61 ~~L~p~t~Y~~~V~A~ 76 (93)
T d2vkwa2 61 KSLDWNAEYEVYVVAE 76 (93)
T ss_dssp CSCCTTCEEEEEEEEE
T ss_pred eccccceEEEEEEEEE
Confidence 4799999999999754
Done!