BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046681
         (438 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WJQ|A Chain A, Nanc Porin Structure In Hexagonal Crystal Form
          Length = 215

 Score = 33.5 bits (75), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 257 LKFRHPWKLYLK---AGTLTRDCAYKIEA-LSSHLNSDYPTPWPEEIQSKIQE 305
           +++R+ WK Y +   +G ++RD  ++ +  ++ H+NSD+   W   + SK  +
Sbjct: 104 IRYRYDWKAYRQQDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQND 156


>pdb|2WJR|A Chain A, Nanc Porin Structure In Rhombohedral Crystal Form
          Length = 214

 Score = 33.5 bits (75), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 257 LKFRHPWKLYLK---AGTLTRDCAYKIEA-LSSHLNSDYPTPWPEEIQSKIQE 305
           +++R+ WK Y +   +G ++RD  ++ +  ++ H+NSD+   W   + SK  +
Sbjct: 103 IRYRYDWKAYRQQDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQND 155


>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
           Synthase Type I Multienzyme Complex
 pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
           Synthase Type I Multienzyme Complex
 pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
           Synthase Type I Multienzyme Complex
 pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
 pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
 pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
 pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With
           Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
 pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With
           Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
 pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With
           Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
          Length = 2051

 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 279 KIEALSSHLNSDYPTPWPEEIQSKIQESYTMISSETGKALKEL 321
           K + + S LN+D+  PW   +  + ++  TM   E  K L EL
Sbjct: 887 KRDYIISRLNADFQKPWFATVNGQARDLATMTYEEVAKRLVEL 929


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,038,222
Number of Sequences: 62578
Number of extensions: 388453
Number of successful extensions: 918
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 915
Number of HSP's gapped (non-prelim): 9
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)