Query 046681
Match_columns 438
No_of_seqs 286 out of 1637
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 3.8E-82 8.2E-87 638.3 41.0 379 13-394 1-406 (406)
2 KOG4711 Predicted membrane pro 100.0 7.7E-55 1.7E-59 454.9 19.6 400 3-405 73-599 (625)
3 TIGR01666 YCCS hypothetical me 100.0 2.6E-28 5.7E-33 263.3 38.0 303 6-355 364-672 (704)
4 TIGR01667 YCCS_YHJK integral m 100.0 4.2E-28 9.1E-33 262.5 39.0 279 5-324 365-649 (701)
5 PF04632 FUSC: Fusaric acid re 100.0 3.3E-26 7.1E-31 248.9 34.9 239 22-288 1-240 (650)
6 PRK10631 p-hydroxybenzoic acid 99.9 1.1E-24 2.3E-29 232.4 31.7 218 17-256 3-230 (652)
7 PRK11427 multidrug efflux syst 99.9 3.4E-21 7.4E-26 204.6 31.4 185 13-207 341-526 (683)
8 COG1289 Predicted membrane pro 99.8 1.1E-17 2.3E-22 182.8 26.4 239 14-286 346-586 (674)
9 PRK11427 multidrug efflux syst 99.7 1.2E-14 2.6E-19 154.9 32.5 172 17-206 24-202 (683)
10 COG4129 Predicted membrane pro 99.7 1.9E-14 4E-19 142.8 29.4 162 24-208 11-172 (332)
11 PF13515 FUSC_2: Fusaric acid 99.6 3E-15 6.5E-20 129.1 14.1 120 44-177 6-128 (128)
12 PF10334 DUF2421: Protein of u 99.6 7.7E-14 1.7E-18 132.9 21.6 213 181-397 1-228 (229)
13 PF06081 DUF939: Bacterial pro 99.6 1.1E-13 2.3E-18 121.9 16.2 136 25-181 6-141 (141)
14 COG1289 Predicted membrane pro 99.6 3.1E-12 6.6E-17 140.1 31.3 173 19-204 7-182 (674)
15 PF10337 DUF2422: Protein of u 99.4 8.4E-10 1.8E-14 115.7 34.8 268 10-285 3-314 (459)
16 PF04632 FUSC: Fusaric acid re 99.2 2.8E-08 6E-13 108.6 32.8 175 20-205 337-513 (650)
17 PF12805 FUSC-like: FUSC-like 99.0 1.6E-07 3.5E-12 92.4 26.3 118 80-209 3-120 (284)
18 TIGR01666 YCCS hypothetical me 99.0 1.2E-06 2.7E-11 95.7 32.0 178 21-215 6-183 (704)
19 TIGR01667 YCCS_YHJK integral m 98.9 6.1E-06 1.3E-10 90.5 32.3 327 21-397 6-345 (701)
20 PRK10631 p-hydroxybenzoic acid 98.0 0.01 2.2E-07 64.7 30.0 162 24-198 354-518 (652)
21 PF11168 DUF2955: Protein of u 96.9 0.036 7.9E-07 48.7 13.9 138 26-180 2-139 (140)
22 PF12732 YtxH: YtxH-like prote 83.5 4.6 0.0001 31.1 6.4 44 165-209 3-46 (74)
23 TIGR02865 spore_II_E stage II 80.5 1.1E+02 0.0023 34.7 25.6 120 77-212 190-330 (764)
24 PF06081 DUF939: Bacterial pro 78.0 12 0.00026 32.8 7.8 47 46-93 92-138 (141)
25 PF06496 DUF1097: Protein of u 69.5 78 0.0017 27.7 14.9 72 52-125 20-91 (144)
26 PF10011 DUF2254: Predicted me 65.8 1.3E+02 0.0028 30.8 13.3 79 131-213 95-174 (371)
27 PF12805 FUSC-like: FUSC-like 64.4 1.5E+02 0.0031 29.0 24.8 52 153-205 68-123 (284)
28 PRK11677 hypothetical protein; 63.5 24 0.00052 30.7 6.2 46 164-209 7-53 (134)
29 PF10225 DUF2215: Uncharacteri 62.3 1.5E+02 0.0033 28.5 12.5 93 108-204 44-140 (249)
30 COG5336 Uncharacterized protei 60.0 58 0.0013 27.2 7.5 28 69-96 43-70 (116)
31 PRK12821 aspartyl/glutamyl-tRN 58.2 1.9E+02 0.0042 30.3 12.6 56 67-124 96-153 (477)
32 COG4980 GvpP Gas vesicle prote 56.1 38 0.00083 28.7 6.0 40 164-204 8-47 (115)
33 TIGR03480 HpnN hopanoid biosyn 52.3 1.9E+02 0.0042 33.0 13.0 20 165-184 835-854 (862)
34 PRK10263 DNA translocase FtsK; 51.7 3.5E+02 0.0076 32.5 14.6 17 40-56 36-52 (1355)
35 PF05478 Prominin: Prominin; 51.5 4.1E+02 0.009 30.2 17.2 39 167-207 153-191 (806)
36 PRK11715 inner membrane protei 50.3 1.3E+02 0.0028 31.6 10.1 60 20-80 328-387 (436)
37 PF12841 YvrJ: YvrJ protein fa 49.6 45 0.00097 22.4 4.4 29 367-395 8-36 (38)
38 COG4393 Predicted membrane pro 48.5 1.6E+02 0.0036 29.6 9.8 61 139-201 90-158 (405)
39 PF07155 ECF-ribofla_trS: ECF- 48.5 1.9E+02 0.0042 25.5 10.4 19 80-98 49-67 (169)
40 PF13295 DUF4077: Domain of un 48.3 1.4E+02 0.0031 25.2 8.2 80 107-191 53-144 (175)
41 PF06123 CreD: Inner membrane 48.0 1.6E+02 0.0035 30.9 10.4 69 22-91 324-394 (430)
42 PF11744 ALMT: Aluminium activ 44.4 86 0.0019 32.6 7.7 41 138-180 43-83 (406)
43 PF13515 FUSC_2: Fusaric acid 39.4 68 0.0015 26.6 5.2 41 141-184 19-59 (128)
44 COG2211 MelB Na+/melibiose sym 38.6 4.8E+02 0.01 27.7 12.3 71 31-102 91-179 (467)
45 PF04286 DUF445: Protein of un 38.5 26 0.00057 35.0 2.9 21 76-96 344-364 (367)
46 COG5547 Small integral membran 37.8 1.4E+02 0.0031 22.0 5.7 24 72-95 4-27 (62)
47 COG5438 Predicted multitransme 37.0 1.3E+02 0.0028 30.8 7.4 45 52-96 177-225 (385)
48 PF03419 Peptidase_U4: Sporula 36.3 1.1E+02 0.0024 30.0 6.9 19 76-94 34-52 (293)
49 PF06295 DUF1043: Protein of u 33.7 1.4E+02 0.003 25.6 6.3 39 165-203 4-43 (128)
50 PF10031 DUF2273: Small integr 31.7 1.9E+02 0.0042 20.6 6.1 20 76-95 8-27 (51)
51 COG4956 Integral membrane prot 31.1 3.2E+02 0.0069 27.4 8.8 28 74-101 3-31 (356)
52 PRK11412 putative uracil/xanth 30.8 6.3E+02 0.014 26.4 11.7 37 138-179 175-211 (433)
53 PRK09776 putative diguanylate 30.4 8.1E+02 0.018 28.4 13.9 6 423-428 633-638 (1092)
54 TIGR02135 phoU_full phosphate 30.4 4E+02 0.0087 23.8 11.3 28 372-399 178-205 (212)
55 PF07907 YibE_F: YibE/F-like p 29.7 2.3E+02 0.005 27.2 7.7 70 25-96 21-97 (244)
56 smart00793 AgrB Accessory gene 29.4 2.4E+02 0.0052 25.6 7.5 58 18-76 19-76 (184)
57 TIGR00796 livcs branched-chain 28.3 6.7E+02 0.014 25.7 15.5 75 12-94 203-279 (378)
58 PRK11660 putative transporter; 27.5 3.3E+02 0.0071 29.5 9.3 15 166-180 425-439 (568)
59 COG2733 Predicted membrane pro 27.4 26 0.00056 35.9 0.7 20 77-96 392-411 (415)
60 COG0786 GltS Na+/glutamate sym 26.1 7.2E+02 0.016 25.8 10.6 89 47-137 246-341 (404)
61 TIGR00930 2a30 K-Cl cotranspor 26.0 4.1E+02 0.0088 31.0 10.0 27 66-93 140-166 (953)
62 PF15383 TMEM237: Transmembran 24.8 5E+02 0.011 25.2 8.9 28 68-95 86-113 (253)
63 PF09726 Macoilin: Transmembra 22.4 4.4E+02 0.0096 29.5 9.1 40 22-62 26-65 (697)
64 PRK01100 putative accessory ge 22.3 4.2E+02 0.009 24.7 7.8 57 22-79 35-91 (210)
65 COG4035 Predicted membrane pro 22.3 83 0.0018 25.5 2.5 39 47-95 62-104 (108)
66 COG0659 SUL1 Sulfate permease 22.2 4.8E+02 0.01 28.3 9.2 15 165-179 393-407 (554)
67 TIGR00153 conserved hypothetic 21.8 6.4E+02 0.014 23.3 18.2 47 257-305 74-121 (216)
68 PF05433 Rick_17kDa_Anti: Glyc 21.5 55 0.0012 22.5 1.2 13 81-93 2-14 (42)
69 COG4980 GvpP Gas vesicle prote 20.8 1E+02 0.0022 26.1 2.9 17 79-95 8-24 (115)
70 PF11085 YqhR: Conserved membr 20.7 4.1E+02 0.0089 24.2 6.9 26 61-89 52-77 (173)
71 COG0670 Integral membrane prot 20.5 7.5E+02 0.016 23.6 12.7 45 138-182 123-167 (233)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=3.8e-82 Score=638.27 Aligned_cols=379 Identities=59% Similarity=0.941 Sum_probs=363.8
Q ss_pred HhcCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 13 KKLGIDDPRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGA 92 (438)
Q Consensus 13 ~~~~~~d~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~ 92 (438)
|++|++||+|+.|++|+|+|++++++++|..+.|.+++.+++||++|+++||+||+|+|+.||++|++||++||++|+++
T Consensus 1 w~~g~~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~ 80 (406)
T PF11744_consen 1 WKFGKDDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGV 80 (406)
T ss_pred CcccccCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998998899999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Q 046681 93 HWLACYSGKNGEPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEVIRMAHERVVTIAIGSC 172 (438)
Q Consensus 93 ~~l~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~~ 172 (438)
.+++...|++.+++++++.+|+++++.+|.+++|.+|++|+||+.+|++||++|.+++|++++.+.+|.+|+..|++|++
T Consensus 81 ~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~ 160 (406)
T PF11744_consen 81 SWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVA 160 (406)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC----CCCcchhHHHHHHHHhcccccHHHHHhhh
Q 046681 173 TSLLVCILICPVWIGEDLHNHVADNLEKLGKFLEGFGGEYFKISNDG----QSNTDKSFLQGYKSALNTKNSEENMANLA 248 (438)
Q Consensus 173 ia~~vs~~i~P~~a~~~l~~~l~~~l~~la~~l~~~~~~y~~~~~~~----~~~~~~~~l~~~r~~L~~~~~~~~la~~a 248 (438)
+++++|++|||.|++++||+.++++++++++++++|+++|++..+++ +...+++.+++|+++|++++++|+|++||
T Consensus 161 i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A 240 (406)
T PF11744_consen 161 ICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFA 240 (406)
T ss_pred HHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhh
Confidence 99999999999999999999999999999999999999999976654 22346789999999999999999999999
Q ss_pred hcCcCCCCCccCCcHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046681 249 RWEPGHGRLKFRHPWKLYLKAGTLTRDCAYKIEALSSHLNSDYPTPWPEEIQSKIQESYTMISSETGKALKELASAIKTM 328 (438)
Q Consensus 249 ~~EP~~~~~~~~~p~~~y~~i~~~~r~~~~~i~aL~~~l~~~~~~p~~~~l~~~l~~~~~~l~~e~~~~L~~La~sl~~~ 328 (438)
+|||+||+|+|||||++|.++++++|+|++.+++|++|+++++|.| +++|+.++++|.+++.|++++|++|+.++++|
T Consensus 241 ~WEP~HG~f~f~~Pw~~Y~kig~~lR~cay~v~AL~gcl~seiq~p--~~~r~~~~~~~~~~~~e~~kvLrel~~~ik~m 318 (406)
T PF11744_consen 241 RWEPPHGRFRFRHPWKQYLKIGALLRHCAYCVEALHGCLNSEIQAP--PELRQKFQEECTRVSSESAKVLRELSNSIKTM 318 (406)
T ss_pred hhcccccCCccCCcHHHHHHHHHHHHHHHHHHHHHHhccccccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCCCCCccccccHHHHHHHHHHHhhccc-----------------------ccccchhhhhhhHHHHHHHHHHHHHHHHH
Q 046681 329 ARSSSVNTHIANSKAAAETLKSLFKISV-----------------------LEEDTDLLEIVPAATVASLLMDVVTCTEK 385 (438)
Q Consensus 329 ~~~~~~~~~~~~~~~a~~~L~~~l~~~~-----------------------~~~~~~~~e~~~~~~~~sll~~~v~~l~~ 385 (438)
+++++.+.++.++++|+|+|+..+++.+ + .+.+.+|++|++||+|+|+|+|+|+|+
T Consensus 319 ~~~~~~~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~l~lat~aSlLie~v~r~~~ 397 (406)
T PF11744_consen 319 TKSSSIDDHVANLKEAAEDLQSKLDSQSYLLLNSESPERSFLRPQSSKEAEW-TSYELLEALPLATFASLLIEFVARLEN 397 (406)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhCCccccCCchhhhhhccccccccccc-cchhHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999878889999999999999998776 2 567889999999999999999999999
Q ss_pred HHHHHHHHh
Q 046681 386 IAACVNDLA 394 (438)
Q Consensus 386 l~~~v~~L~ 394 (438)
++|+|+||+
T Consensus 398 iv~~v~eLa 406 (406)
T PF11744_consen 398 IVEAVEELA 406 (406)
T ss_pred HHHHHHhhC
Confidence 999999996
No 2
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=7.7e-55 Score=454.86 Aligned_cols=400 Identities=42% Similarity=0.729 Sum_probs=361.1
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHH
Q 046681 3 NKIAEKAKEAKKLGIDDPRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCAT 82 (438)
Q Consensus 3 ~~~~~~~~~~~~~~~~d~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT 82 (438)
+|+.++.+++|+++++||+++.|++|+|+|++|++.++|..+.+.+++.++.|+++|+++|+++++|+|+.|+++|.+||
T Consensus 73 ~kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~kglnr~v~t 152 (625)
T KOG4711|consen 73 AKVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSKGLNRAVGT 152 (625)
T ss_pred HHHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHHhHHHHHHH
Confidence 69999999999999999999999999999999999999999988899889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 046681 83 LLGGLLGVGAHWLACYSGKNGEPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEVIRMAHE 162 (438)
Q Consensus 83 ~~G~~lg~~~~~l~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~ 162 (438)
+.++.+|+.+.++...+|...+++.++..+|+.++..+|.+|+|.+|+ |+|+.++|.+|++++.+++++....++.|..
T Consensus 153 L~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~-y~y~~lIf~ltf~l~~vs~~r~~~~~~~a~~ 231 (625)
T KOG4711|consen 153 LSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKA-YEYGFLIFILTFCLVEVSGYRSDYFLELALQ 231 (625)
T ss_pred hhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhc-cchhhhHHHHHhhhheecccchhHHHHHHHH
Confidence 999999999999999999667788889999999999999999999997 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHHHHHH-------HhhhhhccC--CCC------CCCcchhH
Q 046681 163 RVVTIAIGSCTSLLVCILICPVWIGEDLHNHVADNLEKLGKFLEG-------FGGEYFKIS--NDG------QSNTDKSF 227 (438)
Q Consensus 163 R~~~i~iG~~ia~~vs~~i~P~~a~~~l~~~l~~~l~~la~~l~~-------~~~~y~~~~--~~~------~~~~~~~~ 227 (438)
|+.+|.+|..++++++.|+||.|+++++|+..+.++..++.++++ +.++|+... +.. ++...++.
T Consensus 232 Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~~~~y~~~~~i~~~s~~~~~~s~~~~~~ 311 (625)
T KOG4711|consen 232 RLLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCFNGEYFCVEKIEILSIPTFYKSAAWYPL 311 (625)
T ss_pred HHHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhhcchheeehhhhhcchhhhhhhcchhhh
Confidence 999999999999999999999999999999999999999999995 555555433 111 11125677
Q ss_pred HHHHHHHhcccccHHHHHhhhhcCcCCC-CCccCCcHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCcHHHHHHHHHH
Q 046681 228 LQGYKSALNTKNSEENMANLARWEPGHG-RLKFRHPWKLYLKAGTLTRDCAYKIEALSSHLNSDYPTPWPEEIQSKIQES 306 (438)
Q Consensus 228 l~~~r~~L~~~~~~~~la~~a~~EP~~~-~~~~~~p~~~y~~i~~~~r~~~~~i~aL~~~l~~~~~~p~~~~l~~~l~~~ 306 (438)
+++|+++|+++.+++++++||.|||+|| .++|+|||+.|.++...+|+|++.+++|++|+.++.|.| .+++..+..+
T Consensus 312 ~~Gy~svl~s~s~ee~l~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r~ca~~i~alh~~l~s~~qap--~~~~~~~~~~ 389 (625)
T KOG4711|consen 312 YNGYWSVLQSKSQEERLANFAIWEPPHGPYFTFRHPWKNYVKLGGALRQCAFIIMALHGCLLSEIQAP--RDLRNKFRLT 389 (625)
T ss_pred hcchhHHhhhhhHHHHHHHHheecCCCCCceeeecchhHeeehhhHHHHHHHHHHHhcccccccccCc--HHHHHHHHHH
Confidence 8999999999999999999999999999 677999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCC-ccccccHHHHHHHHHHHhhccccc---------------------------
Q 046681 307 YTMISSETGKALKELASAIKTMARSSSV-NTHIANSKAAAETLKSLFKISVLE--------------------------- 358 (438)
Q Consensus 307 ~~~l~~e~~~~L~~La~sl~~~~~~~~~-~~~~~~~~~a~~~L~~~l~~~~~~--------------------------- 358 (438)
+.+++.|++++++.++.++++|+++++. +.+....+.|.++|+..+++.+..
T Consensus 390 l~rva~e~~kvl~~~~~~~~~~~~~s~~~~~~~~~~~~A~~~L~~~ids~p~l~v~~~~~~~~~~~~~~~~~~~~~~e~~ 469 (625)
T KOG4711|consen 390 LRRVAIEISKVLRPFRAKVELMYKLSSALDILLQYVTVADRELQRNIDSNPTLLVNSESWISSNLQAARELLNEVNHEPN 469 (625)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHHHHHhhccCcchHhhcccchhhhhHHHHHHHhhhhccchh
Confidence 9999999999999999999999999874 667777888888888776654310
Q ss_pred --------------------------------------------------------------------------------
Q 046681 359 -------------------------------------------------------------------------------- 358 (438)
Q Consensus 359 -------------------------------------------------------------------------------- 358 (438)
T Consensus 470 ~~~~~~~ek~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~~~s~~~~~~~~p~~~~~ 549 (625)
T KOG4711|consen 470 LKGTFPVEKYNELIHKLLSLGILLEVGTRFGNWDDAKLKETLRRLRKDSVSSVNAVSYISSNSIRSKNPIPRVVPILSRA 549 (625)
T ss_pred hcccccchhHHHHHHHhhcchhhhhccccccchhhHHHHHhhcccccchhhhhhhhhhhhhcccccCCCCcccccccccc
Confidence
Q ss_pred --ccchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 046681 359 --EDTDLLEIVPAATVAS-LLMDVVTCTEKIAACVNDLASQANFNSPNNN 405 (438)
Q Consensus 359 --~~~~~~e~~~~~~~~s-ll~~~v~~l~~l~~~v~~L~~~~~f~~~~~~ 405 (438)
...+..|.++.++|+| ++++++++++.++++++||++.++|++.+..
T Consensus 550 ~~~~~~~se~l~~a~fas~ll~~~~arl~~vv~~~~el~~~a~f~~~~~~ 599 (625)
T KOG4711|consen 550 TSKSYESSEALNLATFASNLLLEFVARLDNVVSAVEELSDKANFKEYDSC 599 (625)
T ss_pred ccccccCchhcCcccccchHHHHHHHHHhhhhhhhhhhhhhhhhcccccc
Confidence 0001124567899999 9999999999999999999999999986543
No 3
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.97 E-value=2.6e-28 Score=263.30 Aligned_cols=303 Identities=17% Similarity=0.166 Sum_probs=208.5
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHH
Q 046681 6 AEKAKEAKKLGIDDPRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLG 85 (438)
Q Consensus 6 ~~~~~~~~~~~~~d~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G 85 (438)
+...+.+.+....|+..++||+|++++++++. ....+++++ ||||+++|+++|++|++|+|..|+.+|++||++|
T Consensus 364 ~~~~~~l~~~l~~~S~~fRhAlRlalal~~a~----~i~~~l~l~-~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG 438 (704)
T TIGR01666 364 KNIWARIFSHFTFESPLFRHAVRLSIVLFLGY----AIIQFFGFN-LGYWILLTTLFVCQPNYSATKVRLRQRIIGTLLG 438 (704)
T ss_pred hHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH----HHHHHhCCC-CCchHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 34555666666778889999999999999984 344567787 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 046681 86 GLLGVGAHWLACYSGKNGEPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEVIRMAHERVV 165 (438)
Q Consensus 86 ~~lg~~~~~l~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~ 165 (438)
+++|.++.++. +.....+ +++.+.+.++.+ + ...+|. ..++++|..++++....+ +.++.+..|++
T Consensus 439 ~~lg~~ll~l~-----p~~~~~l-~liv~~~~l~~~--~---~~~~Y~--~a~~fiT~~vll~~~l~g-~~~~~~~~Rl~ 504 (704)
T TIGR01666 439 VVIGSPLLYFN-----PSLELQL-VLVVLTGVLFFA--F---RSNNYS--FATFFITLLVLLCFNVLG-EGAAVLLPRLL 504 (704)
T ss_pred HHHHHHHHHHh-----ccHHHHH-HHHHHHHHHHHH--H---HHHhHH--HHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence 99999988775 2222212 222222221111 1 123454 444667877776555433 46788999999
Q ss_pred HHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcchhHHHHHHHHhcccccHHHHH
Q 046681 166 TIAIGSCTSLLVCILICPVWIGEDLHNHVADNLEKLGKFLEGFGGEYFKISNDGQSNTDKSFLQGYKSALNTKNSEENMA 245 (438)
Q Consensus 166 ~i~iG~~ia~~vs~~i~P~~a~~~l~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~l~~~r~~L~~~~~~~~la 245 (438)
+|+||+++|+++++++||.|+++++++.+++.++..++|++.++++|..+..+. ..|| +.+++..+..+
T Consensus 505 dTlIG~~iAl~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g~~~~---------~~yr--~aRR~a~~~~a 573 (704)
T TIGR01666 505 DTLIGCAIAWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHIISQYQFGKSDD---------LKYR--IARRNAHNYDA 573 (704)
T ss_pred HHHHHHHHHHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCcch---------hHHH--HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876543221 1122 11222222222
Q ss_pred ----hhhh--cCcCCCCCccCCcHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 246 ----NLAR--WEPGHGRLKFRHPWKLYLKAGTLTRDCAYKIEALSSHLNSDYPTPWPEEIQSKIQESYTMISSETGKALK 319 (438)
Q Consensus 246 ----~~a~--~EP~~~~~~~~~p~~~y~~i~~~~r~~~~~i~aL~~~l~~~~~~p~~~~l~~~l~~~~~~l~~e~~~~L~ 319 (438)
.+++ .||++.+ ..++...+++..++.+++++.+|+.+..+ .+ .+++.+.+.+. ...+...|+
T Consensus 574 ~l~~~~~~m~~EP~~~~----~~~~~~~~ll~~~~~llsyisaLg~~r~~---~~-~~~~~~~~~~~----~~~~~~~l~ 641 (704)
T TIGR01666 574 ALSTTVSNMNNEPVKYK----AYLQKGFRLLKLNHSLLSYISALGAHRDR---LK-NLQQTAQFLDG----FYPVAKKLI 641 (704)
T ss_pred HHHHHHHHHHhCCCcch----hhHHHHHHHHHHHHHHHHHHHHHHhCHhh---CC-ChHHHHHHHHH----HHHHHHHHH
Confidence 2233 5999887 47777889999999999999999976432 11 13444445443 333444777
Q ss_pred HHHHHHHhccCCCCCccccccHHHHHHHHHHHhhcc
Q 046681 320 ELASAIKTMARSSSVNTHIANSKAAAETLKSLFKIS 355 (438)
Q Consensus 320 ~La~sl~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~ 355 (438)
.++...... ++ .--.+..++.++|++.++..
T Consensus 642 ~~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~~ 672 (704)
T TIGR01666 642 YTLEHIEEI--PE---AIFNQQQESIETLELRKQEM 672 (704)
T ss_pred HHhhccccc--cc---chhhhHHHHHHHHHHHHhhc
Confidence 766665421 11 11123455556666666653
No 4
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.97 E-value=4.2e-28 Score=262.53 Aligned_cols=279 Identities=18% Similarity=0.238 Sum_probs=199.8
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHH
Q 046681 5 IAEKAKEAKKLGIDDPRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLL 84 (438)
Q Consensus 5 ~~~~~~~~~~~~~~d~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~ 84 (438)
++.....+.+....|+..++||+|++++++++..+ ..+++++ +|||+++|+++|++|+.|+|..|+.+|++||++
T Consensus 365 ~~~~~~~l~~~l~~~S~~fRhAlR~ala~~~a~~i----~~~l~l~-~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~ 439 (701)
T TIGR01667 365 LKDILPRLKSHLTPESPLFRHAVRLSLVVMLGYAI----LMGTALH-LGYWILLTTLFVCQPNYGATRLRLVQRIIGTVV 439 (701)
T ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH----HHHhCCC-cchHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 34555666667778888999999999999998543 4456777 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 046681 85 GGLLGVGAHWLACYSGKNGEPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEVIRMAHERV 164 (438)
Q Consensus 85 G~~lg~~~~~l~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~ 164 (438)
|+++|+++.++. +.....+.++ .+.+.++.++ .+ ..|+..++++|..+++.....+.+.++++..|+
T Consensus 440 G~llg~~l~~l~-----p~~~~~l~l~-v~~~~~~~~~-----~~--~~Y~~a~~fiT~~vll~~~l~~~~~~~~a~~Rl 506 (701)
T TIGR01667 440 GLVIGVALHFLI-----PSLEGQLTLM-VITGVAFFAF-----RS--KNYGWATVFITLLVLLCFNLLGLDGEQYILPRL 506 (701)
T ss_pred HHHHHHHHHHHc-----CcHHHHHHHH-HHHHHHHHHH-----HH--hhHHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 999999987764 2222222222 2222221111 12 345666677887766655544445678999999
Q ss_pred HHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcchhHHHHHHHHhcccccHHHH
Q 046681 165 VTIAIGSCTSLLVCILICPVWIGEDLHNHVADNLEKLGKFLEGFGGEYFKISNDGQSNTDKSFLQGYKSALNTKNSEENM 244 (438)
Q Consensus 165 ~~i~iG~~ia~~vs~~i~P~~a~~~l~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~l~~~r~~L~~~~~~~~l 244 (438)
++|+||+++|+++++++||.|+++++++.+++.++..++|++.++++|..+..+. ..|+ +.+++..+..
T Consensus 507 ~DTliG~~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~~~~~~---------~~yr--~aRr~a~~a~ 575 (701)
T TIGR01667 507 IDTLIGCLIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQGKPDD---------LAYR--IARRNAHNTD 575 (701)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch---------hHHH--HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876543221 0111 1111111111
Q ss_pred H----hh--hhcCcCCCCCccCCcHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 046681 245 A----NL--ARWEPGHGRLKFRHPWKLYLKAGTLTRDCAYKIEALSSHLNSDYPTPWPEEIQSKIQESYTMISSETGKAL 318 (438)
Q Consensus 245 a----~~--a~~EP~~~~~~~~~p~~~y~~i~~~~r~~~~~i~aL~~~l~~~~~~p~~~~l~~~l~~~~~~l~~e~~~~L 318 (438)
+ .+ ...||++.+ ..++....++..++.+++++.+|+.+.. +.+ .+++.+.+.+.++.+.. .|
T Consensus 576 a~l~~~~~~m~~EP~~~~----~~~~~~~~ll~~~~~ll~~isal~a~r~---~~~-~~~~~~~~~~~~~~~~~----~l 643 (701)
T TIGR01667 576 AALSTTLSNMMQEPAFNS----HYLEDGFRLLTLSHTLLSYISALGAHRE---RLL-NPELAAELLQACEIVAK----AI 643 (701)
T ss_pred HHHHHHHHHHHhCCCCch----hhHHHHHHHHHHHHHHHHHHHHHHhccc---ccC-ChhHHHHHHHHHHHHHH----HH
Confidence 1 12 236999887 4667778899999999999999986532 222 14566666665655555 88
Q ss_pred HHHHHH
Q 046681 319 KELASA 324 (438)
Q Consensus 319 ~~La~s 324 (438)
+.+...
T Consensus 644 ~~~~~~ 649 (701)
T TIGR01667 644 QRCQAR 649 (701)
T ss_pred HHHHHh
Confidence 887777
No 5
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.96 E-value=3.3e-26 Score=248.94 Aligned_cols=239 Identities=21% Similarity=0.279 Sum_probs=182.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 046681 22 RIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGAHWLACYSGK 101 (438)
Q Consensus 22 ~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~~~~g~ 101 (438)
+++|++|+++|.+++ ++++.+++++ +|||+++|+++|++|+.|+++.|++.|++||++|+++|+++..++
T Consensus 1 ~~~~alr~~lA~~lA----l~ia~~l~l~-~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~----- 70 (650)
T PF04632_consen 1 RLRFALRTALAAMLA----LYIAFWLQLP-HPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALF----- 70 (650)
T ss_pred CHHHHHHHHHHHHHH----HHHHHHhCCC-CcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 478999999999998 4556678999 999999999999999999999999999999999999999998664
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 046681 102 NGEPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYRED-EVIRMAHERVVTIAIGSCTSLLVCIL 180 (438)
Q Consensus 102 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~-~~~~~a~~R~~~i~iG~~ia~~vs~~ 180 (438)
+++|.++.+.+.+|.++++|...+ .+..++|+++++++|.++|.+.+..+| +.++++++|+.+|++|++|+.+|+.+
T Consensus 71 ~~~p~l~~~~lal~i~~c~~~~~~--~~~~~~y~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l 148 (650)
T PF04632_consen 71 PQSPLLFLLALALWIGLCLYLSLL--DRNFRSYAFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVSML 148 (650)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777666666776666776543 245679999999999999988876544 57999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcchhHHHHHHHHhcccccHHHHHhhhhcCcCCCCCccC
Q 046681 181 ICPVWIGEDLHNHVADNLEKLGKFLEGFGGEYFKISNDGQSNTDKSFLQGYKSALNTKNSEENMANLARWEPGHGRLKFR 260 (438)
Q Consensus 181 i~P~~a~~~l~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~l~~~r~~L~~~~~~~~la~~a~~EP~~~~~~~~ 260 (438)
+||.+.++.+++.+.+.++..+++++..++ +.++. .. ..+ +...+..+.+.+...+++|.+..+.
T Consensus 149 ~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~----~~~~~----~~-~~~---~l~~~~~~l~~~~~~~~~e~~~~~~--- 213 (650)
T PF04632_consen 149 FFPQRARRQLRRRLAQRLADLARWLAALLD----GDPDP----AA-ERR---RLARDIAALESLLSHARYESPRLRR--- 213 (650)
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHHHHHhC----CCccc----ch-HHH---HHHHHHHHHHHHHhhccccCchhHH---
Confidence 999999999999999999999998877553 22211 11 111 1222222346666777888766541
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhchh
Q 046681 261 HPWKLYLKAGTLTRDCAYKIEALSSHLN 288 (438)
Q Consensus 261 ~p~~~y~~i~~~~r~~~~~i~aL~~~l~ 288 (438)
....++.+......+...+..+.....
T Consensus 214 -~~~~~~~l~~~~~~l~~~~~~l~~~~~ 240 (650)
T PF04632_consen 214 -RRRRLRALQARLLRLLALLRSLARRLA 240 (650)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233445555555555555555555443
No 6
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.94 E-value=1.1e-24 Score=232.44 Aligned_cols=218 Identities=19% Similarity=0.235 Sum_probs=175.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhc---------ccChhHHHHHHHHHHHHHHHHHH
Q 046681 17 IDDPRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVF---------EFSVGATLGKGLNRVCATLLGGL 87 (438)
Q Consensus 17 ~~d~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~---------~ps~G~t~~k~~~Ri~GT~~G~~ 87 (438)
..++.+++|++|+++|++++ ++.+.+++++ +|+|+++|+.+|+ +|..|++++|+++|++||++|++
T Consensus 3 ~p~~~~~~falk~~lA~~LA----L~ia~~l~L~-~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~ 77 (652)
T PRK10631 3 SIANQRLRFAVKLAFAIVLA----LFVGFHFQLE-TPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCI 77 (652)
T ss_pred CCcHHHHHHHHHHHHHHHHH----HHHHHHCCCC-CccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHH
Confidence 45778999999999999998 4556678898 9999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHH
Q 046681 88 LGVGAHWLACYSGKNGEPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYRED-EVIRMAHERVVT 166 (438)
Q Consensus 88 lg~~~~~l~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~-~~~~~a~~R~~~ 166 (438)
.|+++..++ .+.|.++.+.+.+|.++++|...+ .+.+++|++++.++|.++|.+....++ +.++++..|+.+
T Consensus 78 ~~l~l~~~f-----~~~p~l~~l~l~lWig~c~~~s~l--~r~~~sY~~~LaGyTa~iI~~~~~~~p~~~f~~A~~R~~E 150 (652)
T PRK10631 78 AALVIIIAT-----IRAPLLMILLCCIWAGFCTWISSL--VRVENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSE 150 (652)
T ss_pred HHHHHHHHh-----cCChHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 999998764 347777777777787777776543 345689999999999999988876554 578999999999
Q ss_pred HHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcchhHHHHHHHHhcccccHHHHHh
Q 046681 167 IAIGSCTSLLVCILICPVWIGEDLHNHVADNLEKLGKFLEGFGGEYFKISNDGQSNTDKSFLQGYKSALNTKNSEENMAN 246 (438)
Q Consensus 167 i~iG~~ia~~vs~~i~P~~a~~~l~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~l~~~r~~L~~~~~~~~la~ 246 (438)
|++|++|+.+|+.+++|.+.++.+++.+.+.+....++++.+... .+.+ ..++ ...+.+.+....|.+..
T Consensus 151 i~iGi~ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~l~~----~~~~--~~~~----~~~~L~~di~~le~lr~ 220 (652)
T PRK10631 151 IVIGIVCAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCIKH----GDKE--EVDK----AWGDLVRRTTALNGMRS 220 (652)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhcc----Cccc--hhhH----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888876532 1111 1111 12223333345577777
Q ss_pred hhhcCcCCCC
Q 046681 247 LARWEPGHGR 256 (438)
Q Consensus 247 ~a~~EP~~~~ 256 (438)
.+.||.++.+
T Consensus 221 ~~~~e~~~~r 230 (652)
T PRK10631 221 NLMMESSRWQ 230 (652)
T ss_pred hhccCCcchh
Confidence 7889977665
No 7
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.90 E-value=3.4e-21 Score=204.56 Aligned_cols=185 Identities=19% Similarity=0.190 Sum_probs=139.3
Q ss_pred HhcCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 13 KKLGIDDPRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGA 92 (438)
Q Consensus 13 ~~~~~~d~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~ 92 (438)
|.-+..||..++|++|+.+|++++..++ ...+++ +|||+++|+++|++|+.|.|.+|+++|++||++|+++|+++
T Consensus 341 ~~dA~tNp~~~R~ALRt~lAa~La~~i~----~~l~w~-~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ll 415 (683)
T PRK11427 341 VADAFTNPDYMRYALKTLLACLICYTFY----SGVDWE-GIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLF 415 (683)
T ss_pred hHHhccCHHHHHHHHHHHHHHHHHHHHH----HHcCCC-ccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567888999999999999985443 346777 99999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHH
Q 046681 93 HWLACYSGKNGEPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYRED-EVIRMAHERVVTIAIGS 171 (438)
Q Consensus 93 ~~l~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~-~~~~~a~~R~~~i~iG~ 171 (438)
..+.. ++..+...+.++++.+.++..+.. ....+++|+++.+++|+.++.+....++ .....+.+|+.+|++|+
T Consensus 416 ~v~l~--P~l~~~~~Llllllp~~llg~wv~---~~~~R~sYa~~~ag~T~~li~L~~l~~p~~d~~~i~dRvl~tLLGi 490 (683)
T PRK11427 416 TLLVM--PWLDNIVELLFVLAPIFLLGAWIA---TSSERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGILIGT 490 (683)
T ss_pred HHHhc--cccccHHHHHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHhhcccCcccchHHHHHHHHHHHHHH
Confidence 74431 122222222222221111112221 1134678999889999988876443222 24456778999999999
Q ss_pred HHHHhhhhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 046681 172 CTSLLVCILICPVWIGEDLHNHVADNLEKLGKFLEG 207 (438)
Q Consensus 172 ~ia~~vs~~i~P~~a~~~l~~~l~~~l~~la~~l~~ 207 (438)
+++.+++.++||.|.++.+++.+.+.++.++++++.
T Consensus 491 ~iA~la~~lVwP~~~~~~L~~~l~~aLr~la~~l~~ 526 (683)
T PRK11427 491 VVSAVIYTFVWPESEARTLPQKLAGALGMLSKVLRI 526 (683)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999887765
No 8
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.80 E-value=1.1e-17 Score=182.79 Aligned_cols=239 Identities=21% Similarity=0.196 Sum_probs=167.0
Q ss_pred hcCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccC-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 14 KLGIDDPRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFS-VGATLGKGLNRVCATLLGGLLGVGA 92 (438)
Q Consensus 14 ~~~~~d~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps-~G~t~~k~~~Ri~GT~~G~~lg~~~ 92 (438)
....+++..++||+|+++++.++..+ ..+.+++ +|||+++|+++|++|+ +|+|.+|+.+|+.||++|+.+|+++
T Consensus 346 ~~~~~~~~alr~a~R~ala~~~~~~~----~~~~~w~-~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~ 420 (674)
T COG1289 346 AHHRLNSPALRHALRTALALLLGYAF----WLALGWP-HGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLV 420 (674)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHH----HHHhcCC-ccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999998543 4457888 9999999999999999 9999999999999999999999998
Q ss_pred HHHHhhcCCCCh-hHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 046681 93 HWLACYSGKNGE-PVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEVIRMAHERVVTIAIGS 171 (438)
Q Consensus 93 ~~l~~~~g~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~ 171 (438)
.++... .... ..++.+.+++++ .++ ...+|.|+.+ ++|+.+.+..+..+.+...+...|+.++++|+
T Consensus 421 l~~~~p--~~~~~l~~l~~~~~l~~---~~~-----~~~~~~~a~~--~i~l~v~~~~~l~~~~~~~~~~~r~~d~~iG~ 488 (674)
T COG1289 421 LLLLLP--LIPGLLLLLLLAALLFA---AGI-----RLAKYRLATL--GITLLVLFLVGLLGSNGPDYDLPRFLDTLLGS 488 (674)
T ss_pred HHHhcc--cchhHHHHHHHHHHHHH---HHH-----HhcchhHHHH--HHHHHHHHHHHHcccchhhhhHHHHHHHHHHH
Confidence 877521 1111 111112222221 111 1235666654 45555555555445577889999999999999
Q ss_pred HHHHhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcchhHHHHHHHHhcccccHHHHHhhhhcC
Q 046681 172 CTSLLVCILICPVWIGEDLHNHVADNLEKLGKFLEGFGGEYFKISNDGQSNTDKSFLQGYKSALNTKNSEENMANLARWE 251 (438)
Q Consensus 172 ~ia~~vs~~i~P~~a~~~l~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~l~~~r~~L~~~~~~~~la~~a~~E 251 (438)
++|+++++++||.|....+++...+.++...+++....+++....+ . .... +. ...+. ..+.+ ..-|
T Consensus 489 lIa~~~a~~v~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~-~--~~~~---~~-~~~l~-----~~~~~-~~~~ 555 (674)
T COG1289 489 LIALALAFLVWPLWRPRRLRRALRRALRALRRDLASALSREPTGRE-R--RFEH---NA-DDALS-----QLLNL-MASE 555 (674)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcCCccch-h--hhhh---cc-HHHHH-----HHHHH-HhcC
Confidence 9999999999999999999999999999999999887765433321 0 0000 00 01111 11111 1237
Q ss_pred cCCCCCccCCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 046681 252 PGHGRLKFRHPWKLYLKAGTLTRDCAYKIEALSSH 286 (438)
Q Consensus 252 P~~~~~~~~~p~~~y~~i~~~~r~~~~~i~aL~~~ 286 (438)
|...+ .+++.-...+...+.+..++.++..+
T Consensus 556 p~~~~----~~~~~~~~~l~~~~~~~~~~~~l~~~ 586 (674)
T COG1289 556 PAVIR----LALDEGFRLLTLGHVLIRLRLALGAL 586 (674)
T ss_pred Cchhh----hHHhhhhHHHHccHHHHHHHHHhhcC
Confidence 76554 45566667777888888888888865
No 9
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.72 E-value=1.2e-14 Score=154.94 Aligned_cols=172 Identities=13% Similarity=0.027 Sum_probs=137.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 17 IDDPRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGAHWLA 96 (438)
Q Consensus 17 ~~d~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~ 96 (438)
...|.|.-..+|+.++.+++.. ....++.+ +++|++.++.+|++|+.|.|..|++.|++||++|+.+++++.-..
T Consensus 24 ~~~P~r~~~~~r~~~a~~L~l~----i~~~l~~P-~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~ 98 (683)
T PRK11427 24 ERRPGRVPQTLQLWVGCLLVIL----ISMTFEIP-FLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWS 98 (683)
T ss_pred cCCCChHHHHHHHHHHHHHHHH----HHHHcCCC-HHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777778999999999743 34456788 999999999999999999999999999999999999999987554
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH--HhcCCCCchHHHHHHHHHHH-----HHH
Q 046681 97 CYSGKNGEPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLV--SVSGYREDEVIRMAHERVVT-----IAI 169 (438)
Q Consensus 97 ~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv--~l~~~~~~~~~~~a~~R~~~-----i~i 169 (438)
...|.+..+++.+|.+++.|+.. .++.+|.+++.++|. ++ .+.+. ....-+..|..+ +.+
T Consensus 99 -----v~~P~l~~l~ialw~~~~lyl~r----~~rl~yvf~lag~ta-ii~~~f~~v---~~~~E~~~R~~e~~w~~i~~ 165 (683)
T PRK11427 99 -----YGYPLIRLIIAGPILMGCMFLMR----THRLGLVFFAVAIVA-IYGQTFPAM---LDYPEVVVRLTLWCIVVGLY 165 (683)
T ss_pred -----ccchHHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHH-HHHhhcccc---cchHHHHHHHHHHHHHHHHH
Confidence 35688777777777777777632 245789999999995 44 22332 222333789999 999
Q ss_pred HHHHHHhhhhhcccccchHHHHHHHHHHHHHHHHHHH
Q 046681 170 GSCTSLLVCILICPVWIGEDLHNHVADNLEKLGKFLE 206 (438)
Q Consensus 170 G~~ia~~vs~~i~P~~a~~~l~~~l~~~l~~la~~l~ 206 (438)
|++|+.+||.++||.+.++.++..+++.++...+++.
T Consensus 166 gi~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~l~ 202 (683)
T PRK11427 166 PTLLMTLIGVLWFPSRAINQMHQALNDRLDDAISHLT 202 (683)
T ss_pred HHHHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999987766543
No 10
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.70 E-value=1.9e-14 Score=142.80 Aligned_cols=162 Identities=19% Similarity=0.288 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 046681 24 IHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGAHWLACYSGKNG 103 (438)
Q Consensus 24 ~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~~~~g~~~ 103 (438)
...+|+|+|++++. +++.+++++ .+..|++|+++.++||...+++++++|+.|+++|+++|.++..+. | .
T Consensus 11 ~RtlKt~ia~~La~----~ia~~l~~~-~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~---g--~ 80 (332)
T COG4129 11 ARTLKTGLAAGLAL----LIAHLLGLP-QPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLF---G--Q 80 (332)
T ss_pred HHHHHHHHHHHHHH----HHHHHhCCC-chHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHc---C--c
Confidence 35699999999984 444577888 899999999999999999999999999999999999999998775 4 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 046681 104 EPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEVIRMAHERVVTIAIGSCTSLLVCILICP 183 (438)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~~vs~~i~P 183 (438)
+|+.+++.+.++..++..+ +..-|.....++...+++.. ..+..+... |+.++++|+.+|+++|.++.|
T Consensus 81 ~~~~~~v~~~i~i~~~~~~--------~~~~g~~~~~~~~~~ii~~~-~~~~~~~~~--r~l~~~vG~~~a~lvn~~~~~ 149 (332)
T COG4129 81 NPIAFGVVLLIIIPLLVLL--------KLENGVVPITVGVLHILVAA-MIPLFLIFN--RFLLVFVGVGVAFLVNLVMPP 149 (332)
T ss_pred cHHHHHHHHHHHHHHHHHH--------hcccchhHHHHHHHHHHHHc-ccchhHHHH--HHHHHHHHHHHHHHHhhhcCC
Confidence 6777777766665554332 22222322222232232222 233344443 999999999999999988888
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Q 046681 184 VWIGEDLHNHVADNLEKLGKFLEGF 208 (438)
Q Consensus 184 ~~a~~~l~~~l~~~l~~la~~l~~~ 208 (438)
+. .+++....+........+...
T Consensus 150 ~~--~~~~~~~~kv~~~~~~il~~~ 172 (332)
T COG4129 150 PD--YELKLYRAKVEAILASILWEV 172 (332)
T ss_pred ch--HHHHHHHHHHHHHHHHHHHHH
Confidence 77 566666666665555555443
No 11
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.65 E-value=3e-15 Score=129.11 Aligned_cols=120 Identities=28% Similarity=0.470 Sum_probs=91.0
Q ss_pred hhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHH
Q 046681 44 PLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGAHWLACYSGKNGEPVVIAVFVFIVAATVTFVR 123 (438)
Q Consensus 44 ~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~~~~g~~~~~~~~~~~v~~~~~~~~~~~ 123 (438)
..+.+.+ |++|+++|++++++|+.|++.+|+.+|++||++|+++|++++.+.+ .+ +.+.++++++.++..|.
T Consensus 6 ~~~~~~~-~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~- 77 (128)
T PF13515_consen 6 AQWLGLP-HGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFP-----GN-YVLILIVFLLMFLIFYF- 77 (128)
T ss_pred HHHHcCC-chHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CH-HHHHHHHHHHHHHHHHH-
Confidence 3456667 9999999999999999999999999999999999999999987752 23 33334444443333332
Q ss_pred HhcccccchhHHHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHHHHHHHHhh
Q 046681 124 FFPKMKARYDYGLMVFILTFCLVSVSGYR---EDEVIRMAHERVVTIAIGSCTSLLV 177 (438)
Q Consensus 124 ~~~~~~~~~~y~~~i~~lT~~lv~l~~~~---~~~~~~~a~~R~~~i~iG~~ia~~v 177 (438)
+ .+.|....+.+|+.++++.++. +.+.++.+.+|+.++++|+++++++
T Consensus 78 -----~-~~~y~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 78 -----L-SKNYAIAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred -----H-hccHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 1 2345555677888888777753 4567889999999999999999874
No 12
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=99.62 E-value=7.7e-14 Score=132.87 Aligned_cols=213 Identities=15% Similarity=0.169 Sum_probs=144.8
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC--CC-CCcchhHHHHHHHHhcccccHHHHHhhhhcCcCCCCC
Q 046681 181 ICPVWIGEDLHNHVADNLEKLGKFLEGFGGEYFKISND--GQ-SNTDKSFLQGYKSALNTKNSEENMANLARWEPGHGRL 257 (438)
Q Consensus 181 i~P~~a~~~l~~~l~~~l~~la~~l~~~~~~y~~~~~~--~~-~~~~~~~l~~~r~~L~~~~~~~~la~~a~~EP~~~~~ 257 (438)
++|.+++..+|+.+++.+..++++|+.+++.+....+. .. ....+.+.+.+.+.....+..+.+..+++|||+-++
T Consensus 1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G- 79 (229)
T PF10334_consen 1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLKG- 79 (229)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCC-
Confidence 47999999999999999999999999888766653311 11 111233444444444444456777888999999655
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccc
Q 046681 258 KFRHPWKLYLKAGTLTRDCAYKIEALSSHLNSDYPTPWPEEIQSKIQESYTMISSETGKALKELASAIKTMARSSSVNTH 337 (438)
Q Consensus 258 ~~~~p~~~y~~i~~~~r~~~~~i~aL~~~l~~~~~~p~~~~l~~~l~~~~~~l~~e~~~~L~~La~sl~~~~~~~~~~~~ 337 (438)
+||.+.|++++..++++.+.+..|...........|.+.+...+...-..+.+++..+|..+++|++++.|+|+. ..
T Consensus 80 --~FP~~~Y~~l~~~~~~il~~l~~l~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~i~~vl~~ls~al~~g~pLP~~-lp 156 (229)
T PF10334_consen 80 --RFPKETYQRLLELCQNILDLLSLLSYVSTRLEPSEWRERLLRRTGWLRPELIGDIFSVLYMLSSALRTGQPLPPY-LP 156 (229)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCcc-CC
Confidence 489999999999999999999888755443322234455655565555677788899999999999999999873 22
Q ss_pred cccHHHHHHHHHHHhhccc---------ccccchhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046681 338 IANSKAAAETLKSLFKISV---------LEEDTDLLE---IVPAATVASLLMDVVTCTEKIAACVNDLASQA 397 (438)
Q Consensus 338 ~~~~~~a~~~L~~~l~~~~---------~~~~~~~~e---~~~~~~~~sll~~~v~~l~~l~~~v~~L~~~~ 397 (438)
.|-..+..+-+........ ..-+.+++. ...|++..+....++.++|+|+..||+|+++.
T Consensus 157 ~pl~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~y~~~~v~~~~~~~i~~~lD~lv~~vK~lvGE~ 228 (229)
T PF10334_consen 157 APLVRRHFDHLRKLWQLDRSSDDEVELPDILSLEHLRDEDYRRFCVAVSAASSILERLDELVIVVKELVGEQ 228 (229)
T ss_pred cchHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2222333332222211111 001223332 34566666667799999999999999999875
No 13
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=99.57 E-value=1.1e-13 Score=121.92 Aligned_cols=136 Identities=27% Similarity=0.428 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Q 046681 25 HSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGAHWLACYSGKNGE 104 (438)
Q Consensus 25 ~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~~~~g~~~~ 104 (438)
..+|+++|.+++. ..+.+++.+ +++++.+++++++|||..+|++.+.+|+.|+++|+++|+++..+. | .+
T Consensus 6 r~iKtaiA~~la~----~ia~~l~~~-~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~---g--~~ 75 (141)
T PF06081_consen 6 RTIKTAIAAFLAI----LIAQLLGLQ-YPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLIL---G--YN 75 (141)
T ss_pred HHHHHHHHHHHHH----HHHHHHCCC-chHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C--cc
Confidence 3589999999984 444456777 899999999999999999999999999999999999999988765 3 36
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 046681 105 PVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEVIRMAHERVVTIAIGSCTSLLVCILI 181 (438)
Q Consensus 105 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~~vs~~i 181 (438)
|+.+++.+.+....+... | ...+.....+++..++..+ + +.+..+..|+.++++|+.+|+++|+++
T Consensus 76 ~~~~~l~v~i~i~~~~~l------~--~~~~~~~a~v~~~~i~~~~--~-~~~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 76 PLSIGLAVIITIPICNWL------K--LGEGIIVAAVTFVHILLSG--S-DSFSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred HHHHHHHHHHHHHHHHHh------C--CCCeehHHHHHHHHHHHcC--C-ccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 776666665544333222 2 2223333444554444332 2 334459999999999999999999763
No 14
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.57 E-value=3.1e-12 Score=140.08 Aligned_cols=173 Identities=22% Similarity=0.236 Sum_probs=129.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046681 19 DPRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGAHWLACY 98 (438)
Q Consensus 19 d~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~~~ 98 (438)
....++|++|+.+|+.++..++| +.+.+ +++|+++|+.++++|..|+.+.|++.|++||++|..++.++..+.
T Consensus 7 ~~~~~~~~lr~~~a~~la~~~~~----~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~-- 79 (674)
T COG1289 7 TNADWRYALRTFLAACLALALAF----LLGLP-QPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALL-- 79 (674)
T ss_pred CchhHHHHHHHHHHHHHHHHHHH----HcCCC-CccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHH--
Confidence 44579999999999999855444 56777 899999999999999999999999999999999999999987554
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcC--CCCc-hHHHHHHHHHHHHHHHHHHHH
Q 046681 99 SGKNGEPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSG--YRED-EVIRMAHERVVTIAIGSCTSL 175 (438)
Q Consensus 99 ~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~--~~~~-~~~~~a~~R~~~i~iG~~ia~ 175 (438)
..+|+++.+.+.++.++++.... ..+...+|++++.++|+.++. +. +..+ ..+..+.+|+.++++|+.|+-
T Consensus 80 ---~~~p~~f~~~~~~~~~l~~~~~~--~~~~~~~~a~~la~yT~~~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~ 153 (674)
T COG1289 80 ---AQEPWLFLLLLTLWLGLCTAIGS--LYRTIASYAFVLAGYTALIIG-PAPAIPEPELLFDGAVWRVVEILLGILCAP 153 (674)
T ss_pred ---ccCcHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 13444444444344333333322 234567899999999999887 32 2112 378999999999999999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHHHH
Q 046681 176 LVCILICPVWIGEDLHNHVADNLEKLGKF 204 (438)
Q Consensus 176 ~vs~~i~P~~a~~~l~~~l~~~l~~la~~ 204 (438)
.+....+|...+..|-+.+.........+
T Consensus 154 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~~ 182 (674)
T COG1289 154 VVPLLESPSRLYQALANYLEAKSRLFAQL 182 (674)
T ss_pred cchHhhhHHHHHHHHHHHHHHHHhccchh
Confidence 99988788777776666665555444433
No 15
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=99.42 E-value=8.4e-10 Score=115.71 Aligned_cols=268 Identities=19% Similarity=0.181 Sum_probs=177.2
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHHHHH
Q 046681 10 KEAKKLGIDDPRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFE-FSVGATLGKGLNRVCATLLGGLL 88 (438)
Q Consensus 10 ~~~~~~~~~d~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~-ps~G~t~~k~~~Ri~GT~~G~~l 88 (438)
+..|-.-..|.+.++--+|.+++..++.+++...+....+++.+|.+.|..+++.- -.+|..+...+.=++|+.+|...
T Consensus 3 ~p~W~~~~ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~ 82 (459)
T PF10337_consen 3 LPAWLLDHLDRRSLKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAW 82 (459)
T ss_pred CchhhhcCCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 44566556688999999999999999999888776656667689998888776643 56788888888888999999998
Q ss_pred HHHHHHHHhhcCCC------------------C-hh-------------------HHHHHHHHHHHHHHHHHHHhccccc
Q 046681 89 GVGAHWLACYSGKN------------------G-EP-------------------VVIAVFVFIVAATVTFVRFFPKMKA 130 (438)
Q Consensus 89 g~~~~~l~~~~g~~------------------~-~~-------------------~~~~~~v~~~~~~~~~~~~~~~~~~ 130 (438)
|++..+++...-.. + ++ .+.++++|++.++..++|.. .+
T Consensus 83 ~~l~~~~a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~---~p 159 (459)
T PF10337_consen 83 GLLAMYIAVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAK---NP 159 (459)
T ss_pred HHHHHHHHHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHh---Cc
Confidence 88888776543311 1 11 23445555554455555532 13
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHHHHHHH
Q 046681 131 RYDYGLMVFILTFCLVSVSGYRED--EVIRMAHERVVTIAIGSCTSLLVCILICPVWIGEDLHNHVADNLEKLGKFLEGF 208 (438)
Q Consensus 131 ~~~y~~~i~~lT~~lv~l~~~~~~--~~~~~a~~R~~~i~iG~~ia~~vs~~i~P~~a~~~l~~~l~~~l~~la~~l~~~ 208 (438)
++..+.+++.+..++.+.++...+ ....++..=+.-.++|+++++++|++|||.+.+..+.+.+.+.+..+...++..
T Consensus 160 ~~~~~~I~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~ 239 (459)
T PF10337_consen 160 KLNFPVIFGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQ 239 (459)
T ss_pred chHHHHHHHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333 344555555667899999999999999999999999999999999988888764
Q ss_pred hhhhhccCCCCCCCc--chhHHHHHHHHhccc-ccHHHHHhhhhcCcCCCCCccCCcHHHHHHHHHHHHHHHHHHHHHHh
Q 046681 209 GGEYFKISNDGQSNT--DKSFLQGYKSALNTK-NSEENMANLARWEPGHGRLKFRHPWKLYLKAGTLTRDCAYKIEALSS 285 (438)
Q Consensus 209 ~~~y~~~~~~~~~~~--~~~~l~~~r~~L~~~-~~~~~la~~a~~EP~~~~~~~~~p~~~y~~i~~~~r~~~~~i~aL~~ 285 (438)
. +|+...+.+.... .-+.++..+..+..+ ...+....+++.|-..|+ ++-+.+..+...+|++...+..|..
T Consensus 240 ~-~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~gr----l~~~Dl~~i~~~lr~l~~~~~gL~~ 314 (459)
T PF10337_consen 240 R-NFLQSSEPSDEFDAKSLKKLKATKAKLRALYAKLQAALRFLKLEISYGR----LSPDDLKPIFSLLRSLMIPLSGLSS 314 (459)
T ss_pred H-HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeec----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4665543321110 001222222222111 112333456678988888 5778899999988888776666653
No 16
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.21 E-value=2.8e-08 Score=108.58 Aligned_cols=175 Identities=18% Similarity=0.140 Sum_probs=128.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046681 20 PRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVF--EFSVGATLGKGLNRVCATLLGGLLGVGAHWLAC 97 (438)
Q Consensus 20 ~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~--~ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~~ 97 (438)
+..+++++|+++++.++++++. +.+|+ .|.-+++++.++. -.+.++...+...++.|+++|+++|++..++.-
T Consensus 337 ~~A~~~alra~la~~~~~l~Wi----~t~W~-~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vl 411 (650)
T PF04632_consen 337 PLALRNALRAFLAILIAGLFWI----ATGWP-SGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVL 411 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HcCCC-hhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777888888877765533 45788 7888888877776 688899999999999999999999998775431
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 046681 98 YSGKNGEPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEVIRMAHERVVTIAIGSCTSLLV 177 (438)
Q Consensus 98 ~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~~v 177 (438)
++......+.++++.+.+...+. ..++++.+.++.+.++|.+.+..+......+.....+.+.+++|+++++++
T Consensus 412 --P~~~~f~~L~l~l~~~l~~~~~~----~~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l~ 485 (650)
T PF04632_consen 412 --PHLDGFPLLALVLAPFLFLGGLL----MARPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAALV 485 (650)
T ss_pred --hccCcHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22122222222222222222222 236788887777778887776565544556788899999999999999999
Q ss_pred hhhcccccchHHHHHHHHHHHHHHHHHH
Q 046681 178 CILICPVWIGEDLHNHVADNLEKLGKFL 205 (438)
Q Consensus 178 s~~i~P~~a~~~l~~~l~~~l~~la~~l 205 (438)
..+++|.......++.+....+.+++..
T Consensus 486 ~~li~p~~~~~~~rrl~~~~~~~l~~~~ 513 (650)
T PF04632_consen 486 FRLIRPFSPEWRRRRLLRALRRDLARLA 513 (650)
T ss_pred HHHHCCCChhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988887654
No 17
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=99.04 E-value=1.6e-07 Score=92.37 Aligned_cols=118 Identities=18% Similarity=0.124 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchHHHH
Q 046681 80 CATLLGGLLGVGAHWLACYSGKNGEPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEVIRM 159 (438)
Q Consensus 80 ~GT~~G~~lg~~~~~l~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~~~~ 159 (438)
+.|+++..++..+..+.. .+|+++.+.+++++++++++..+ ++++.- +...|.. +++++...+.....
T Consensus 3 ~~~~~~~~~~s~~~~l~~-----~~~~l~~~~~~~~~F~~~ml~~~---G~r~~~---i~~~~Ll-~~v~t~~~~~~~~~ 70 (284)
T PF12805_consen 3 IATLLCFALASLLVGLLF-----PYPWLLILVLALLTFFFGMLGVY---GPRAAT---IGFATLL-VAVYTMAGPSPGPE 70 (284)
T ss_pred HHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHHHHH---hhHHHH---HHHHHHH-HHHHHHhCCCcchH
Confidence 345555533333333331 23555555555555555565443 333322 2222222 22222222221226
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Q 046681 160 AHERVVTIAIGSCTSLLVCILICPVWIGEDLHNHVADNLEKLGKFLEGFG 209 (438)
Q Consensus 160 a~~R~~~i~iG~~ia~~vs~~i~P~~a~~~l~~~l~~~l~~la~~l~~~~ 209 (438)
++.+...+++|+++.++++++.||.+..+..++.+++.+..+|+|++.-.
T Consensus 71 ~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka 120 (284)
T PF12805_consen 71 ALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKA 120 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999998633
No 18
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=98.97 E-value=1.2e-06 Score=95.72 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=114.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046681 21 RRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGAHWLACYSG 100 (438)
Q Consensus 21 ~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~~~~g 100 (438)
.++.+++|+.+|+..+.++.++ ++..+-+.=+.+.++..--.+..+.+..-+++++-|++...++.+...+. .
T Consensus 6 ~~~~~~lri~ia~~~~~~~~~~----~~~~~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll--~- 78 (704)
T TIGR01666 6 AKVIYTIPIFIALNGAAVGIWF----FDISSQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELL--F- 78 (704)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----hCchhHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--h-
Confidence 4688999999999887655443 23222344444555555556777888888888899988888888776654 1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 046681 101 KNGEPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEVIRMAHERVVTIAIGSCTSLLVCIL 180 (438)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~~vs~~ 180 (438)
+.|+++.+.+++.+++++.+.. ++++|.-. .+.|.. ++++...+.+.....+...+..++|+++-.+++.+
T Consensus 79 --~~p~lf~~~l~~~tf~~~mlga---~G~Rya~I---af~tLl-iaiytmlg~~~~~~w~~~pllll~GalwY~llsl~ 149 (704)
T TIGR01666 79 --GKPWLFAVGLTVSTFGFIMLGA---VGQRYATI---AFGSLL-VALYTMLGYIEVNVWFIQPVMLLCGTLWYSVVTLI 149 (704)
T ss_pred --cCcHHHHHHHHHHHHHHHHHHH---hhhhHHHH---HHHHHH-HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554444444443344332 35556311 111221 11222211111123344788899999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 046681 181 ICPVWIGEDLHNHVADNLEKLGKFLEGFGGEYFKI 215 (438)
Q Consensus 181 i~P~~a~~~l~~~l~~~l~~la~~l~~~~~~y~~~ 215 (438)
.|+.|..+.+++.+++.+..+++|++.=. .++++
T Consensus 150 ~~~l~p~rp~q~~LA~~y~~La~yL~aka-~lf~p 183 (704)
T TIGR01666 150 VHLFFPNRPVQENLAKAFCQLAEYLETKS-CFFDP 183 (704)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHH-hhCCC
Confidence 99999999999999999999999997633 24443
No 19
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=98.85 E-value=6.1e-06 Score=90.51 Aligned_cols=327 Identities=14% Similarity=0.127 Sum_probs=168.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046681 21 RRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGAHWLACYSG 100 (438)
Q Consensus 21 ~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~~~~g 100 (438)
.++.+++|+.+|+..+.++.+. ++....+.=+.+.++..--.+..+.+..-+++++-|++...++.+...+.
T Consensus 6 ~~~~~~l~v~ia~~~~~~~~~~----~g~~~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll---- 77 (701)
T TIGR01667 6 QKLVYCLPVFIALMGAELRIWW----FGLLFLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLL---- 77 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----hCCccHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4688999999999887554332 33322344444444444445666777777777777777777777666553
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhcccccchh---HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 046681 101 KNGEPVVIAVFVFIVAATVTFVRFFPKMKARYD---YGLMVFILTFCLVSVSGYREDEVIRMAHERVVTIAIGSCTSLLV 177 (438)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~~v 177 (438)
...|+++.+.+++.+++++.+.. ++++|. .|.+ .+..+.++ + .+....-+.-...+++|.++-.++
T Consensus 78 -~~~p~~~~~~l~~~tf~~~mlga---~G~r~~~I~f~~L-~~aiytml---~---~~~~~~w~~~pllll~GalwY~l~ 146 (701)
T TIGR01667 78 -FPKPWLFPFLLTLLTFGFILLGA---LGQRYATIAFASL-LAAIYTML---G---AGEVPVWFIEPLLILAGTLWYGLL 146 (701)
T ss_pred -hcchHHHHHHHHHHHHHHHHHHH---hhhhHHhHHHHHH-HHHHHHHc---C---cccccHHHHHHHHHHHHHHHHHHH
Confidence 13455554444444444344332 356664 2222 11122211 2 111112233566788899999999
Q ss_pred hhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcchhHHHHHH---HHhccccc-HHHHHhhhhcCcC
Q 046681 178 CILICPVWIGEDLHNHVADNLEKLGKFLEGFGGEYFKISNDGQSNTDKSFLQGYK---SALNTKNS-EENMANLARWEPG 253 (438)
Q Consensus 178 s~~i~P~~a~~~l~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~l~~~r---~~L~~~~~-~~~la~~a~~EP~ 253 (438)
+.+.++.|..+..++.+++.+..+++|++.=- .++++.++. +. ++...+..+ ...+..++ .+.+. .|. +
T Consensus 147 sll~~~l~p~rp~q~~La~~y~~La~yL~aKa-~lf~p~~~~-~~-~~~~~~l~~~n~~lv~~ln~~~~~ll--~r~--~ 219 (701)
T TIGR01667 147 TLIWFLLFPNQPLQESLSRLYRELAEYLEAKS-SLFDPDQHT-DP-EKALLPLAVRNGKVVDALNQCKQQLL--MRL--R 219 (701)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCC-Ch-hHhHHHHHHHHHHHHHHHHHHHHHHH--HHh--c
Confidence 99999999999999999999999999987532 244432221 01 111111111 01111000 01111 111 1
Q ss_pred CCCCccCCcH-HHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCcHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Q 046681 254 HGRLKFRHPW-KLYLKAGTLTRDCAYKIEALSSHLNSDYPTPWPEEIQSKIQES-----YTMISSETGKALKELASAIKT 327 (438)
Q Consensus 254 ~~~~~~~~p~-~~y~~i~~~~r~~~~~i~aL~~~l~~~~~~p~~~~l~~~l~~~-----~~~l~~e~~~~L~~La~sl~~ 327 (438)
.++ +.+. +.+.++.-....+...+.+ ++.+. +++++.+... ++++-...++.+++++.++..
T Consensus 220 ~~~---~~~~~~rll~~y~~A~di~E~a~s------s~~~Y---~~L~~~f~~sd~l~~~~~ll~~~a~a~~~la~ai~~ 287 (701)
T TIGR01667 220 GNR---TDPLTKRMLRYYFEAQDIHERASS------SHHQY---QELQELFEHSDVLFRIQRLLQTQAQACQVLARDILL 287 (701)
T ss_pred CCC---CCchHHHHHHHHHHHHHHHHHHHh------ccCCH---HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 111 0111 1111111111222222222 12111 4455444443 666666777799999999987
Q ss_pred ccCCCCCccccccHHHHHHHHHHHhhcccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046681 328 MARSSSVNTHIANSKAAAETLKSLFKISVLEEDTDLLEIVPAATVASLLMDVVTCTEKIAACVNDLASQA 397 (438)
Q Consensus 328 ~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~~~~e~~~~~~~~sll~~~v~~l~~l~~~v~~L~~~~ 397 (438)
+++.+ +-++.+.+.++++..+........ + +. ++ ..+-.+.+.++.+.+.+..+.+..
T Consensus 288 ~~~~~----~~~~~~~~~~~l~~sl~~l~~~~~-~--~~-~~----~~l~~l~~nl~~i~~~l~~~~~~~ 345 (701)
T TIGR01667 288 RQPYY----HRLRTERALEKQIAALEKIRQNQA-P--DD-LL----GQLGYLLDNLQSIDWQLARIARVL 345 (701)
T ss_pred CCCCC----CCchHHHHHHHHHHHHHHHHHcCC-c--ch-HH----HHHHHHHHHHHHHHHHHHHhhccc
Confidence 66543 334556666666655543211000 0 01 11 123345566777777777777654
No 20
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=98.01 E-value=0.01 Score=64.69 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcc--cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 046681 24 IHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFE--FSVGATLGKGLNRVCATLLGGLLGVGAHWLACYSGK 101 (438)
Q Consensus 24 ~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~--ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~~~~g~ 101 (438)
.-++|+++++.+++++. .+.+|+ .|.-+++.+.+++. -+..+-..-..+=+.||++|..+|++..+..- ++
T Consensus 354 ~~glRa~~ai~~~~~fW----I~TgW~-~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~vL--P~ 426 (652)
T PRK10631 354 INGWRTTLATALGTLFW----LWTGWT-SGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVII--PN 426 (652)
T ss_pred HHHHHHHHHHHHHHHHH----HHccCc-hHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH--hc
Confidence 34467777777766542 245777 67777666555543 22222333344445888888888888664431 22
Q ss_pred CC-hhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 046681 102 NG-EPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEVIRMAHERVVTIAIGSCTSLLVCIL 180 (438)
Q Consensus 102 ~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~~vs~~ 180 (438)
.. ...++.+++..+. .+....+ ++..++.+-+.+.++..+.......-.+...+.--+..++|+++|+++..+
T Consensus 427 i~~~f~lL~laLap~~---~~~g~~~---~~~~~~~lg~~i~f~~~l~l~n~~~~d~~~FlN~alA~v~Gi~~A~l~f~l 500 (652)
T PRK10631 427 TQQSMLLLCISLGVLG---FFIGIEV---QKRRLGSLGALASTINILVLDNPMTFHFSQFLDSALGQIVGCFLALIVILL 500 (652)
T ss_pred ccccHHHHHHHHHHHH---HHHHHHh---cccHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1221111111111 1211111 222344333344444443332222235667788889999999999999988
Q ss_pred cccccchHHHHHHHHHHH
Q 046681 181 ICPVWIGEDLHNHVADNL 198 (438)
Q Consensus 181 i~P~~a~~~l~~~l~~~l 198 (438)
+.|.......++.+....
T Consensus 501 irp~~~~r~~rrL~~~~~ 518 (652)
T PRK10631 501 VRDNSRDRTGRVLLNQFV 518 (652)
T ss_pred hCCCCHHHHHHHHHHHHH
Confidence 888865555555444433
No 21
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=96.89 E-value=0.036 Score=48.67 Aligned_cols=138 Identities=17% Similarity=0.241 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChh
Q 046681 26 SFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGAHWLACYSGKNGEP 105 (438)
Q Consensus 26 alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~~~~g~~~~~ 105 (438)
++|.+.+.+++ +..+...+++ .|+-+.+..++++.+.---+.+...+=+..+++-+..+.++..+. + +.|
T Consensus 2 ~LRia~g~~l~----l~~~~~~~~~-~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll---~--~~P 71 (140)
T PF11168_consen 2 ALRIAFGVTLG----LFLSKLFGWP-LPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLL---Q--DYP 71 (140)
T ss_pred eeehhHHHHHH----HHHHHHHCCC-chHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---h--cCC
Confidence 47888888887 4445567888 899999998888865555556666666677777777777665443 2 355
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 046681 106 VVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEVIRMAHERVVTIAIGSCTSLLVCIL 180 (438)
Q Consensus 106 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~~vs~~ 180 (438)
....+.++++.. ..|.+. .+++....+.+..+...++...+..+ ...+.++......|++++.+++++
T Consensus 72 ~~~~l~v~l~~~-~~f~~~---~~~~~~l~~~~~lv~~~ii~~f~~~~---~~~~~~l~~~l~~~~~iav~i~~l 139 (140)
T PF11168_consen 72 VVMLLLVFLLFF-WSFYRM---SRGPKFLFGTMLLVGLSIIPVFASYN---TADAEDLILSLVLAILIAVLIAAL 139 (140)
T ss_pred HHHHHHHHHHHH-HHHHHH---hCCCchHHHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHh
Confidence 544444443321 223322 23322222223344444444333322 346677888888888888877653
No 22
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=83.54 E-value=4.6 Score=31.14 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Q 046681 165 VTIAIGSCTSLLVCILICPVWIGEDLHNHVADNLEKLGKFLEGFG 209 (438)
Q Consensus 165 ~~i~iG~~ia~~vs~~i~P~~a~~~l~~~l~~~l~~la~~l~~~~ 209 (438)
...++|++++.++.+++-| ..++++|+.+.+..+.+.+-+....
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP-~sG~e~R~~l~~~~~~~~~~~~~~~ 46 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP-KSGKETREKLKDKAEDLKDKAKDLY 46 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999987777 6788899999998888776655433
No 23
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=80.53 E-value=1.1e+02 Score=34.65 Aligned_cols=120 Identities=14% Similarity=0.205 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchH
Q 046681 77 NRVCATLLGGLLGVGAHWLACYSGKNGEPVVIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEV 156 (438)
Q Consensus 77 ~Ri~GT~~G~~lg~~~~~l~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~ 156 (438)
..+.|.-+|+..|+++..+....+ ...++.+++..|. +.+...+|- . .+..-+. -++++..++.+|.-...+
T Consensus 190 a~~gG~~~Gaa~Gv~~Gli~~l~~-~~~~~~~~~~af~-GLlaG~fk~---~-gK~g~~~-g~~l~~~il~~y~~~~~~- 261 (764)
T TIGR02865 190 SYIGGSGAGAAGGVVIGVILGLAN-NANLYQIGVFGFA-GLLGGIFKE---L-GKIGTGI-GYLVGFLILAFYTQGSVA- 261 (764)
T ss_pred HHhcCchHhHHHHHHHHHHHHhcC-ccHHHHHHHHHHH-HHHHHhhcc---C-CcceeeH-HHHHHHHHHHHHhccchh-
Confidence 345566667777776666654433 3456655554443 222223221 1 2333222 245556555555421111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccc-------------ch--------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 046681 157 IRMAHERVVTIAIGSCTSLLVCILICPVW-------------IG--------EDLHNHVADNLEKLGKFLEGFGGEY 212 (438)
Q Consensus 157 ~~~a~~R~~~i~iG~~ia~~vs~~i~P~~-------------a~--------~~l~~~l~~~l~~la~~l~~~~~~y 212 (438)
.... +.++++++++-+ +.|.. ++ +++++.+...++..++.++..-+.+
T Consensus 262 ~~~~---~~e~~ia~~lFl-----l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~a~~~~~Ls~tf 330 (764)
T TIGR02865 262 FSLA---LYEALIATLLFL-----LIPNKIYKKLERYLDGERKQPDLQEDYMRKVREIAAEKLEEFSEVFRELSNTF 330 (764)
T ss_pred HHHH---HHHHHHHHHHHH-----HhhHHHHHHHHhhCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 556666666543 33421 11 2256667777777777776654433
No 24
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=77.96 E-value=12 Score=32.77 Aligned_cols=47 Identities=23% Similarity=0.202 Sum_probs=27.9
Q ss_pred hhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 46 YEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGAH 93 (438)
Q Consensus 46 ~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~~ 93 (438)
++++++.-..+.++++.++...-.+... ..+|++-|++|...|+++-
T Consensus 92 ~l~~~~~~~~a~v~~~~i~~~~~~~~~~-~~~r~l~t~iG~~va~lVN 138 (141)
T PF06081_consen 92 WLKLGEGIIVAAVTFVHILLSGSDSFSY-ALNRVLLTLIGIGVALLVN 138 (141)
T ss_pred HhCCCCeehHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4455522334555555545433333333 8888888888888888764
No 25
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=69.46 E-value=78 Score=27.69 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=49.2
Q ss_pred cchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHh
Q 046681 52 SAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGAHWLACYSGKNGEPVVIAVFVFIVAATVTFVRFF 125 (438)
Q Consensus 52 ~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~ 125 (438)
-+.|+..-..-..--. |...+...+=..+...|.+.|.+...+.+..+.. .+....+.+++..+...+..-.
T Consensus 20 l~~W~~Figwa~yfa~-G~~~~~~~~~~~~~~~Gi~~a~~~~~~~~~~~~~-~~~~~~i~v~i~~~~m~~~~~~ 91 (144)
T PF06496_consen 20 LPGWAGFIGWASYFAA-GGGKKGLKKSLASNLSGIVWAWLAILLSGLLGGN-GPLALAIVVGIFSFVMVYQAKL 91 (144)
T ss_pred chHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHHHhcc
Confidence 4579887666555444 8888888888899999999999998887766542 2444455566655544554433
No 26
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=65.83 E-value=1.3e+02 Score=30.75 Aligned_cols=79 Identities=10% Similarity=0.169 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccchHHHHH-HHHHHHHHHHHHHHHHh
Q 046681 131 RYDYGLMVFILTFCLVSVSGYREDEVIRMAHERVVTIAIGSCTSLLVCILICPVWIGEDLHN-HVADNLEKLGKFLEGFG 209 (438)
Q Consensus 131 ~~~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~~vs~~i~P~~a~~~l~~-~l~~~l~~la~~l~~~~ 209 (438)
+...|..++...|+++.+....+...-+ ..|+. +.+++++++++ .+.+-.|-+.-.+. +..+.++.+.+-....+
T Consensus 95 q~vLg~Figtfvy~l~~l~~i~~~~~~~--~p~~~-~~~a~~l~i~~-v~~li~fI~~i~~~iqv~~ii~~i~~~~~~~i 170 (371)
T PF10011_consen 95 QVVLGTFIGTFVYSLLVLIAIRSGDYGS--VPRLS-VFIALALAILS-VVLLIYFIHHIARSIQVSNIIARIEEDARKAI 170 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccccc--CcchH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3456666667777887776654432211 45555 66666665554 34444444433332 44455555555554444
Q ss_pred hhhh
Q 046681 210 GEYF 213 (438)
Q Consensus 210 ~~y~ 213 (438)
+++.
T Consensus 171 ~~~~ 174 (371)
T PF10011_consen 171 DRLY 174 (371)
T ss_pred HHhh
Confidence 4444
No 27
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=64.43 E-value=1.5e+02 Score=28.99 Aligned_cols=52 Identities=19% Similarity=0.040 Sum_probs=37.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhhhcccccchHHH----HHHHHHHHHHHHHHH
Q 046681 153 EDEVIRMAHERVVTIAIGSCTSLLVCILICPVWIGEDL----HNHVADNLEKLGKFL 205 (438)
Q Consensus 153 ~~~~~~~a~~R~~~i~iG~~ia~~vs~~i~P~~a~~~l----~~~l~~~l~~la~~l 205 (438)
+++.+..+..=++.-+.-.++++++. .++|.+..++. -..+++.++.-++++
T Consensus 68 ~~~~~~~~~l~~~Gglwy~~lsl~~~-~l~p~r~~rqaLa~~y~~lA~yl~~ka~~~ 123 (284)
T PF12805_consen 68 GPEALEHALLFLAGGLWYLLLSLLWW-PLRPYRPVRQALAECYRALADYLRAKARFF 123 (284)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34667777777777788888888875 68999888764 446666666666666
No 28
>PRK11677 hypothetical protein; Provisional
Probab=63.48 E-value=24 Score=30.75 Aligned_cols=46 Identities=9% Similarity=0.132 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhhhhccccc-chHHHHHHHHHHHHHHHHHHHHHh
Q 046681 164 VVTIAIGSCTSLLVCILICPVW-IGEDLHNHVADNLEKLGKFLEGFG 209 (438)
Q Consensus 164 ~~~i~iG~~ia~~vs~~i~P~~-a~~~l~~~l~~~l~~la~~l~~~~ 209 (438)
++..+||+++++++..+.-|.. ....+.+.+.+.-..+..|=+.+.
T Consensus 7 ~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~ 53 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELV 53 (134)
T ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999998776663 455566666666666655444433
No 29
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=62.35 E-value=1.5e+02 Score=28.53 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHHHHHHHHHHHhhhhhccc
Q 046681 108 IAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYREDEV----IRMAHERVVTIAIGSCTSLLVCILICP 183 (438)
Q Consensus 108 ~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~~~~----~~~a~~R~~~i~iG~~ia~~vs~~i~P 183 (438)
+|++..++..++-..|++| +..-.|+.+..+.++....+... ..+. .+....=+..+++.+++.+++++-..|
T Consensus 44 lGv~~s~li~~~~~~k~lP--rk~~~~~~l~gg~~~~~y~l~~~-~~nl~~il~~~~~~v~~yv~~~G~vsf~vcy~~gp 120 (249)
T PF10225_consen 44 LGVLASLLILLFQLSKLLP--RKSMFYAVLYGGWSFGLYFLQQL-WENLQSILEEYRIYVLGYVLVVGLVSFAVCYRYGP 120 (249)
T ss_pred HHHHHHHHHHHHHHHHHcc--CcchhHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 3444444444455667777 33334555555444443322211 1111 122333344556666677888776666
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 046681 184 VWIGEDLHNHVADNLEKLGKF 204 (438)
Q Consensus 184 ~~a~~~l~~~l~~~l~~la~~ 204 (438)
.. .+..++.+.-.++.++-.
T Consensus 121 ~~-~~rs~~~v~W~Lqligl~ 140 (249)
T PF10225_consen 121 PV-DPRSRNFVKWALQLIGLV 140 (249)
T ss_pred Cc-cHhHHHHHHHHHHHHHHH
Confidence 64 366677777777766543
No 30
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.03 E-value=58 Score=27.25 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 69 GATLGKGLNRVCATLLGGLLGVGAHWLA 96 (438)
Q Consensus 69 G~t~~k~~~Ri~GT~~G~~lg~~~~~l~ 96 (438)
.+-++-+..=+.|+++|+++|+++=.++
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~a 70 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKFA 70 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556667899999999999988776
No 31
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=58.18 E-value=1.9e+02 Score=30.32 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=34.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhH--HHHHHHHHHHHHHHHHHH
Q 046681 67 SVGATLGKGLNRVCATLLGGLLGVGAHWLACYSGKNGEPV--VIAVFVFIVAATVTFVRF 124 (438)
Q Consensus 67 s~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~~~~g~~~~~~--~~~~~v~~~~~~~~~~~~ 124 (438)
+.|-.-.+...-+.|++.|++.|.+.=.+....+ +.++ .+.+..++.+.++.+.|.
T Consensus 96 sFgfIpi~l~G~LFGP~~G~l~g~lsDlLg~if~--~G~fFpGFTLsA~L~GlIyGl~r~ 153 (477)
T PRK12821 96 TLELILVKISGLLFGPIIGIFSAATIDFLTVIFS--GGVFNYGYVLGAILTGMIAGILRE 153 (477)
T ss_pred ehhhHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC--CCCccHHHHHHHHHHHHHHHHHHH
Confidence 4566666777788899999999888665542222 1222 234556666666667664
No 32
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=56.13 E-value=38 Score=28.65 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHHH
Q 046681 164 VVTIAIGSCTSLLVCILICPVWIGEDLHNHVADNLEKLGKF 204 (438)
Q Consensus 164 ~~~i~iG~~ia~~vs~~i~P~~a~~~l~~~l~~~l~~la~~ 204 (438)
++.+++|++++.++..++-| ..++++|+.+.+..+.+-..
T Consensus 8 l~G~liGgiiGa~aaLL~AP-~sGkelR~~~K~~~~~~~~~ 47 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAP-KSGKELRKKLKKSGDALFEL 47 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHHHHHhHHH
Confidence 46788999999999876666 55777886666555554443
No 33
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=52.28 E-value=1.9e+02 Score=33.01 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhhhhcccc
Q 046681 165 VTIAIGSCTSLLVCILICPV 184 (438)
Q Consensus 165 ~~i~iG~~ia~~vs~~i~P~ 184 (438)
..+.+|++++++++.++.|.
T Consensus 835 ~~~~~gi~~~l~~~l~~lPa 854 (862)
T TIGR03480 835 ILLSLGLGLTLLCTLIFLPA 854 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999998884
No 34
>PRK10263 DNA translocase FtsK; Provisional
Probab=51.72 E-value=3.5e+02 Score=32.52 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=7.6
Q ss_pred HHHhhhhhCCCCcchHH
Q 046681 40 YYFKPLYEGFGVSAMWA 56 (438)
Q Consensus 40 ~~~~~~~~~~~~~~~Wa 56 (438)
+++.+++.+.+..+-|-
T Consensus 36 fL~lALiSYsPsDPSwS 52 (1355)
T PRK10263 36 WLMAALLSFNPSDPSWS 52 (1355)
T ss_pred HHHHHHHhCCccCCccc
Confidence 33444433333356674
No 35
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=51.53 E-value=4.1e+02 Score=30.20 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 046681 167 IAIGSCTSLLVCILICPVWIGEDLHNHVADNLEKLGKFLEG 207 (438)
Q Consensus 167 i~iG~~ia~~vs~~i~P~~a~~~l~~~l~~~l~~la~~l~~ 207 (438)
+++|++++++.|-.+- ..-+.....+.+.++.+..|+..
T Consensus 153 il~g~i~aF~~n~~l~--~~v~~~~~~~~~~~~Dl~~~l~~ 191 (806)
T PF05478_consen 153 ILFGVICAFVANQQLS--TGVDDTPNTVNSTLDDLRTFLND 191 (806)
T ss_pred HHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHh
Confidence 3667777777764221 22234455666666666666654
No 36
>PRK11715 inner membrane protein; Provisional
Probab=50.29 E-value=1.3e+02 Score=31.63 Aligned_cols=60 Identities=18% Similarity=0.081 Sum_probs=33.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHH
Q 046681 20 PRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVC 80 (438)
Q Consensus 20 ~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~ 80 (438)
+-+..+=+=+|+|+++-.++-+..+-+.+|. -+|++.-.+++.+-..+....-|+..|.+
T Consensus 328 ~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~-~AYliAa~a~v~li~~Y~~~vl~~~k~g~ 387 (436)
T PRK11715 328 RIHPVQYLLVGLALVLFYLLLLSLSEHIGFT-LAYLIAALACVLLIGFYLSAVLRSWKRGL 387 (436)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3334444445666665444333334455565 66776666666666666666666666644
No 37
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=49.61 E-value=45 Score=22.44 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046681 367 VPAATVASLLMDVVTCTEKIAACVNDLAS 395 (438)
Q Consensus 367 ~~~~~~~sll~~~v~~l~~l~~~v~~L~~ 395 (438)
.|.+.-..||+.+=.++|++.+++++|..
T Consensus 8 FPi~va~yLL~R~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 8 FPIAVAIYLLVRIEKKLDELTESINELSE 36 (38)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666677899999999999999999975
No 38
>COG4393 Predicted membrane protein [Function unknown]
Probab=48.51 E-value=1.6e+02 Score=29.56 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCCc-------h-HHHHHHHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHH
Q 046681 139 FILTFCLVSVSGYRED-------E-VIRMAHERVVTIAIGSCTSLLVCILICPVWIGEDLHNHVADNLEKL 201 (438)
Q Consensus 139 ~~lT~~lv~l~~~~~~-------~-~~~~a~~R~~~i~iG~~ia~~vs~~i~P~~a~~~l~~~l~~~l~~l 201 (438)
.++.|+-.+.++..+. + .-.-.+.|+..+++|.++++++. +|=.|...++++..+..+..+
T Consensus 90 ~lLsF~aaL~wg~~~n~f~if~tdvinTd~ll~lg~i~lall~~ilia--~~l~~~~~qlk~~~a~ll~lL 158 (405)
T COG4393 90 LLLSFCAALHWGFMPNLFAIFGTDVINTDSLLRLGAILLALLTIILIA--LSLQKVYFQLKSSLAPLLALL 158 (405)
T ss_pred HHHHHHHHHhhccCccccccccccccccHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhHHHHH
Confidence 3677777766665432 1 23456789999999999998875 456677777777776655544
No 39
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=48.47 E-value=1.9e+02 Score=25.50 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 046681 80 CATLLGGLLGVGAHWLACY 98 (438)
Q Consensus 80 ~GT~~G~~lg~~~~~l~~~ 98 (438)
.|+..|++.|.+-..+.+.
T Consensus 49 ~Gp~~G~ivg~ig~~l~dl 67 (169)
T PF07155_consen 49 FGPKYGAIVGAIGDLLSDL 67 (169)
T ss_pred HChHHHHHHHHHHHHHHHH
Confidence 5566666655554444443
No 40
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=48.32 E-value=1.4e+02 Score=25.22 Aligned_cols=80 Identities=24% Similarity=0.477 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhcCCCC-chH-----------HHHHHHHHHHHHHHHHHH
Q 046681 107 VIAVFVFIVAATVTFVRFFPKMKARYDYGLMVFILTFCLVSVSGYRE-DEV-----------IRMAHERVVTIAIGSCTS 174 (438)
Q Consensus 107 ~~~~~v~~~~~~~~~~~~~~~~~~~~~y~~~i~~lT~~lv~l~~~~~-~~~-----------~~~a~~R~~~i~iG~~ia 174 (438)
++|+.+.+++.+.+|+.. +...|.|-.....+-+..+++-.+.. |.. ....-+|+.-++-|+.+.
T Consensus 53 vcgisvvvfgtlltfies---meamykyimtfmllmmsfimvqafnespavfqmvyftlavsliylserlvvilggvavv 129 (175)
T PF13295_consen 53 VCGISVVVFGTLLTFIES---MEAMYKYIMTFMLLMMSFIMVQAFNESPAVFQMVYFTLAVSLIYLSERLVVILGGVAVV 129 (175)
T ss_pred hhchhhhhHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhHHHHhcccchhe
Confidence 356667777766666544 34456665443333334444434432 221 233456777766665543
Q ss_pred HhhhhhcccccchHHHH
Q 046681 175 LLVCILICPVWIGEDLH 191 (438)
Q Consensus 175 ~~vs~~i~P~~a~~~l~ 191 (438)
..+.++..|..+-+.
T Consensus 130 --ltfilcsywpeqffa 144 (175)
T PF13295_consen 130 --LTFILCSYWPEQFFA 144 (175)
T ss_pred --eehhhhhcChHHHHH
Confidence 334455555544333
No 41
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=48.00 E-value=1.6e+02 Score=30.87 Aligned_cols=69 Identities=25% Similarity=0.174 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHH--HHHHHHHHHHH
Q 046681 22 RIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVC--ATLLGGLLGVG 91 (438)
Q Consensus 22 ~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~--GT~~G~~lg~~ 91 (438)
+..+=+=+|+|+++-.++-+..+-+.+|. -+|++.-.+++.+-..+....-|+..|.+ |.+++++.|++
T Consensus 324 HpiQY~LVGlAl~lFYlLLLSlSEhi~F~-~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~L 394 (430)
T PF06123_consen 324 HPIQYLLVGLALVLFYLLLLSLSEHIGFN-LAYLIAALACIGLISLYLSSVLKSWKRGLIFAGLLAALYGFL 394 (430)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33344446666665443333334455565 67777776767666666666666666543 33333444433
No 42
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=44.36 E-value=86 Score=32.57 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 046681 138 VFILTFCLVSVSGYREDEVIRMAHERVVTIAIGSCTSLLVCIL 180 (438)
Q Consensus 138 i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~~vs~~ 180 (438)
-+++|..+|+ .+..+..+.-...|.+.|++|+++|+.+..+
T Consensus 43 WavlTVvvvf--e~tvGatl~KG~nR~lGTl~aG~La~~~~~l 83 (406)
T PF11744_consen 43 WAVLTVVVVF--EPTVGATLSKGLNRGLGTLLAGILAFGVSWL 83 (406)
T ss_pred HHHhhhHhhc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567776665 4446677888999999999999999988754
No 43
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=39.36 E-value=68 Score=26.64 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 046681 141 LTFCLVSVSGYREDEVIRMAHERVVTIAIGSCTSLLVCILICPV 184 (438)
Q Consensus 141 lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~~vs~~i~P~ 184 (438)
+|..+++-. ..++....+.+|+..+++|+++++++.. +.|.
T Consensus 19 it~~~v~~~--~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~-~~~~ 59 (128)
T PF13515_consen 19 ITVVSVLSP--SYGATVNRAIQRILGTLIGVVLGLLLLY-LFPG 59 (128)
T ss_pred HHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 556555422 3456789999999999999999999874 5553
No 44
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=38.60 E-value=4.8e+02 Score=27.71 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHh-----------------cccChhHHHHHHHHHHHHHHHHHHHHH-HH
Q 046681 31 LAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVV-----------------FEFSVGATLGKGLNRVCATLLGGLLGV-GA 92 (438)
Q Consensus 31 lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv-----------------~~ps~G~t~~k~~~Ri~GT~~G~~lg~-~~ 92 (438)
+-.++.+.+.|..+.+ +....-.|+.+|.++. |.++..+-.+-.-.|..++.+|..+.. +.
T Consensus 91 ip~~i~~~l~F~~p~~-~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~ 169 (467)
T COG2211 91 IPFAIVAVLLFITPDF-SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLF 169 (467)
T ss_pred HHHHHHHHHHHcCCCc-ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444334554432 2222566777665442 234555666666777777777755544 44
Q ss_pred HHHHhhcCCC
Q 046681 93 HWLACYSGKN 102 (438)
Q Consensus 93 ~~l~~~~g~~ 102 (438)
..+....|..
T Consensus 170 ~plv~~~g~~ 179 (467)
T COG2211 170 PPLVKLFGGG 179 (467)
T ss_pred HHHHHHhCCC
Confidence 4666666654
No 45
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=38.45 E-value=26 Score=35.03 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046681 76 LNRVCATLLGGLLGVGAHWLA 96 (438)
Q Consensus 76 ~~Ri~GT~~G~~lg~~~~~l~ 96 (438)
+=|+.|+++|+++|++.+.+.
T Consensus 344 ~IrinGallG~liG~~~~~i~ 364 (367)
T PF04286_consen 344 WIRINGALLGGLIGLLQYLIL 364 (367)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 458999999999999987654
No 46
>COG5547 Small integral membrane protein [Function unknown]
Probab=37.76 E-value=1.4e+02 Score=22.00 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 72 LGKGLNRVCATLLGGLLGVGAHWL 95 (438)
Q Consensus 72 ~~k~~~Ri~GT~~G~~lg~~~~~l 95 (438)
+++.-.|++|-++|.++|.++..+
T Consensus 4 lk~fkypIIgglvglliAili~t~ 27 (62)
T COG5547 4 LKKFKYPIIGGLVGLLIAILILTF 27 (62)
T ss_pred HHHhccchHHHHHHHHHHHHHHHH
Confidence 456678899999999999887655
No 47
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=37.01 E-value=1.3e+02 Score=30.77 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=29.6
Q ss_pred cchHHHHHHHHhcc----cChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 52 SAMWAVLTVVVVFE----FSVGATLGKGLNRVCATLLGGLLGVGAHWLA 96 (438)
Q Consensus 52 ~~~Wa~lTvvvv~~----ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~ 96 (438)
+++|..+.+.++.. +-+-.-..|.+.-+.||++|.++.+++.++.
T Consensus 177 ~~i~v~ii~~viit~~tL~~v~g~n~KTl~A~~~Ti~~~~ls~il~~~~ 225 (385)
T COG5438 177 NPILVFIILCVIITAITLFMVNGINKKTLAAFIGTILGTLLSIILAYIS 225 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69998877666543 3444445566667777777777776666554
No 48
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=36.35 E-value=1.1e+02 Score=30.05 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046681 76 LNRVCATLLGGLLGVGAHW 94 (438)
Q Consensus 76 ~~Ri~GT~~G~~lg~~~~~ 94 (438)
..=++|.++|++.+.++..
T Consensus 34 ~Rll~~A~~Gal~~~~~~~ 52 (293)
T PF03419_consen 34 WRLLLGAAIGALYSLLIFF 52 (293)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3445788888888877654
No 49
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.74 E-value=1.4e+02 Score=25.61 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhhhcccccc-hHHHHHHHHHHHHHHHH
Q 046681 165 VTIAIGSCTSLLVCILICPVWI-GEDLHNHVADNLEKLGK 203 (438)
Q Consensus 165 ~~i~iG~~ia~~vs~~i~P~~a-~~~l~~~l~~~l~~la~ 203 (438)
+..+||+++++++..+..+... ...+.+.+.+.=..+.+
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~ 43 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQ 43 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 4567888888888877666632 23455555544444443
No 50
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=31.71 E-value=1.9e+02 Score=20.64 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046681 76 LNRVCATLLGGLLGVGAHWL 95 (438)
Q Consensus 76 ~~Ri~GT~~G~~lg~~~~~l 95 (438)
..|++|.++|.++|++...+
T Consensus 8 ~~~iiG~~~G~ila~l~l~~ 27 (51)
T PF10031_consen 8 RGKIIGGLIGLILALLILTF 27 (51)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 45677777777777776544
No 51
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=31.10 E-value=3.2e+02 Score=27.38 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhcCC
Q 046681 74 KGLNRVCATLLGGLLGVGAH-WLACYSGK 101 (438)
Q Consensus 74 k~~~Ri~GT~~G~~lg~~~~-~l~~~~g~ 101 (438)
+.+-|++=+++|+.+|+... .+...+|.
T Consensus 3 ~~ii~l~~~i~g~~lG~~~~p~ll~~~~~ 31 (356)
T COG4956 3 KWIIILLFIIIGAVLGFAVIPELLADLGI 31 (356)
T ss_pred HHHHHHHHHHHHhhhhHhhHHHHHhhcCc
Confidence 55678888999999999887 55544453
No 52
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=30.79 E-value=6.3e+02 Score=26.45 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhh
Q 046681 138 VFILTFCLVSVSGYREDEVIRMAHERVVTIAIGSCTSLLVCI 179 (438)
Q Consensus 138 i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~~vs~ 179 (438)
+..+|+.++.+.. .+.--..|...+++|.++++++..
T Consensus 175 ~a~~~l~~il~~~-----~~~~g~~~~~svLiGiv~G~v~a~ 211 (433)
T PRK11412 175 LSVAVMCLVLAMI-----IFLPQRIARYSLLVGTIVGWILWA 211 (433)
T ss_pred HHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455555544332 244557799999999999999754
No 53
>PRK09776 putative diguanylate cyclase; Provisional
Probab=30.44 E-value=8.1e+02 Score=28.37 Aligned_cols=6 Identities=33% Similarity=0.717 Sum_probs=2.3
Q ss_pred cCCCCC
Q 046681 423 PISGTE 428 (438)
Q Consensus 423 ~~~~~~ 428 (438)
|+.+.+
T Consensus 633 pi~~~~ 638 (1092)
T PRK09776 633 PLSTLD 638 (1092)
T ss_pred eeecCC
Confidence 443333
No 54
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=30.40 E-value=4e+02 Score=23.84 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 046681 372 VASLLMDVVTCTEKIAACVNDLASQANF 399 (438)
Q Consensus 372 ~~sll~~~v~~l~~l~~~v~~L~~~~~f 399 (438)
....++.++..+||+.+....++....|
T Consensus 178 ~~~~~~~i~~~lERigD~~~nIae~~~~ 205 (212)
T TIGR02135 178 AALDVLLIARYLERIGDHATNIAERVIY 205 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999988888765443
No 55
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=29.70 E-value=2.3e+02 Score=27.23 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHH--HHHHhhhh-hCCCCcchHHHHHHHHhcc----cChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 25 HSFKVGLAITLVSL--FYYFKPLY-EGFGVSAMWAVLTVVVVFE----FSVGATLGKGLNRVCATLLGGLLGVGAHWLA 96 (438)
Q Consensus 25 ~alK~~lA~~l~~l--~~~~~~~~-~~~~~~~~Wa~lTvvvv~~----ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~ 96 (438)
.++|.-+++.+..+ +..+.+.. .++ +++|+.+-+.+++- .-.....+|...-+.||++|.+++.++.++.
T Consensus 21 ~G~~sllsL~~n~~~i~~~~i~~~~~G~--~~~~v~~i~~~~~~~vtl~lv~G~n~kt~~A~~~tl~~~~~~~~l~~~~ 97 (244)
T PF07907_consen 21 KGLRSLLSLIFNFLIIFFVLIPLILNGY--NPILVTIIAAILITAVTLFLVNGFNKKTLAAFIGTLIGVLLAGILALLV 97 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45665555444333 32333432 233 68887766555443 3455667788888888888888777765543
No 56
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=29.44 E-value=2.4e+02 Score=25.65 Aligned_cols=58 Identities=16% Similarity=0.023 Sum_probs=34.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHH
Q 046681 18 DDPRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGL 76 (438)
Q Consensus 18 ~d~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~ 76 (438)
+|....+||+.+.+......++.+..+...+.- ....+.+.+...+++..|+-=.+..
T Consensus 19 ~~~e~~~YGle~il~~l~~~~~~l~i~~~~g~~-~~~li~~~~f~~lR~~aGG~Ha~t~ 76 (184)
T smart00793 19 IQLLKIKYGLEVILINLIKLIIVYGVALLLGVF-LETLIVHLSFLFLRRFAGGAHAKSS 76 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhhCCceecCCc
Confidence 344567899999888887777666666555433 2333444444556666665444443
No 57
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=28.27 E-value=6.7e+02 Score=25.74 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=41.6
Q ss_pred HHhcCCCCcc-hHHHHHHHHH-HHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHH
Q 046681 12 AKKLGIDDPR-RIIHSFKVGL-AITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRVCATLLGGLLG 89 (438)
Q Consensus 12 ~~~~~~~d~~-~~~~alK~~l-A~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg 89 (438)
+...+-.|++ ..+..++.|+ |..+...+|.-.. |.+- .....+.-.-+-++.+....++..|+.-+.+++
T Consensus 203 i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~-~lGa-------~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~ 274 (378)
T TIGR00796 203 IRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLF-YLGA-------TSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLG 274 (378)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-------CcHhhhcccCCcHHHHHHHHHHHcchhHHHHHH
Confidence 3344555554 5577888888 4444433322111 1111 100111111146788888899999998888888
Q ss_pred HHHHH
Q 046681 90 VGAHW 94 (438)
Q Consensus 90 ~~~~~ 94 (438)
.++..
T Consensus 275 i~v~l 279 (378)
T TIGR00796 275 LIITL 279 (378)
T ss_pred HHHHH
Confidence 77653
No 58
>PRK11660 putative transporter; Provisional
Probab=27.48 E-value=3.3e+02 Score=29.51 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhhh
Q 046681 166 TIAIGSCTSLLVCIL 180 (438)
Q Consensus 166 ~i~iG~~ia~~vs~~ 180 (438)
++..|++++++++.+
T Consensus 425 ~~~~gi~~Gi~~s~~ 439 (568)
T PRK11660 425 DMVIAISVGIVLASL 439 (568)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444455555555543
No 59
>COG2733 Predicted membrane protein [Function unknown]
Probab=27.38 E-value=26 Score=35.87 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046681 77 NRVCATLLGGLLGVGAHWLA 96 (438)
Q Consensus 77 ~Ri~GT~~G~~lg~~~~~l~ 96 (438)
-|+=||++||++|++++.+.
T Consensus 392 IRiNGtvVGG~~Gllly~I~ 411 (415)
T COG2733 392 IRINGTVVGGIAGLLLYAIS 411 (415)
T ss_pred EeEcCchHHHHHHHHHHHHH
Confidence 37889999999999998765
No 60
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=26.13 E-value=7.2e+02 Score=25.77 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=47.5
Q ss_pred hCCCCcchHHHHHHHHhccc----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCChhHHHH-HHHHHHHHHH
Q 046681 47 EGFGVSAMWAVLTVVVVFEF----SVGATLGKGLNRVCATLLGGLLGVGAHWLAC--YSGKNGEPVVIA-VFVFIVAATV 119 (438)
Q Consensus 47 ~~~~~~~~Wa~lTvvvv~~p----s~G~t~~k~~~Ri~GT~~G~~lg~~~~~l~~--~~g~~~~~~~~~-~~v~~~~~~~ 119 (438)
..+| --.|++...+++.+- ..-....+..+++.+--++-++++.+..+-. ..+ -.-|.++. ..-.+...++
T Consensus 246 ~~lP-~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~-l~lpl~viL~vQ~i~m~lf 323 (404)
T COG0786 246 LALP-LFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELAD-LALPLLVILAVQTIVMALF 323 (404)
T ss_pred cccc-HHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHH
Confidence 4556 567888888887651 1122567777777777778777777654321 111 12233221 1111122223
Q ss_pred HHHHHhcccccchhHHHH
Q 046681 120 TFVRFFPKMKARYDYGLM 137 (438)
Q Consensus 120 ~~~~~~~~~~~~~~y~~~ 137 (438)
.|.-.++.+.++|+-+.+
T Consensus 324 a~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 324 AIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred HHHHHHHHhCcchhHHHH
Confidence 344445556788886654
No 61
>TIGR00930 2a30 K-Cl cotransporter.
Probab=25.95 E-value=4.1e+02 Score=30.99 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=19.1
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 66 FSVGATLGKGLNRVCATLLGGLLGVGAH 93 (438)
Q Consensus 66 ps~G~t~~k~~~Ri~GT~~G~~lg~~~~ 93 (438)
|..|.. .--..|.+|..+|+.+|+..+
T Consensus 140 p~aGG~-Y~yisralGp~~Gf~iG~~~~ 166 (953)
T TIGR00930 140 VKGGGA-YYLISRSLGPEFGGSIGLIFA 166 (953)
T ss_pred CCccHH-HHHHHHHhCcHHHHHHHHHHH
Confidence 343333 344688899999999998765
No 62
>PF15383 TMEM237: Transmembrane protein 237
Probab=24.76 E-value=5e+02 Score=25.17 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 68 VGATLGKGLNRVCATLLGGLLGVGAHWL 95 (438)
Q Consensus 68 ~G~t~~k~~~Ri~GT~~G~~lg~~~~~l 95 (438)
+.-+.++++.++.=..=|-+.|+.+|.+
T Consensus 86 vA~~vq~~f~~~~~~~hG~LAG~al~h~ 113 (253)
T PF15383_consen 86 VAIRVQRAFRVIGLFCHGFLAGFALWHI 113 (253)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557778776665555555556666543
No 63
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.39 E-value=4.4e+02 Score=29.50 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHH
Q 046681 22 RIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVV 62 (438)
Q Consensus 22 ~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvv 62 (438)
....-+|..+.-+++.++=|+...-+.+- -|.|.++-.+.
T Consensus 26 ~~~~~~~~~~~w~~~~~~d~~~~~r~e~~-~p~wl~~~~~~ 65 (697)
T PF09726_consen 26 STFLYVKFLLVWALVLLADFMLEFRFEYL-WPFWLLLRSVY 65 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHH
Confidence 34455777777777655555554434443 57888877655
No 64
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=22.34 E-value=4.2e+02 Score=24.73 Aligned_cols=57 Identities=9% Similarity=-0.058 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcccChhHHHHHHHHHH
Q 046681 22 RIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFEFSVGATLGKGLNRV 79 (438)
Q Consensus 22 ~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~ps~G~t~~k~~~Ri 79 (438)
..++|+.+.+......++.+..+..++.- ......+.+...++...|+.=.+...+.
T Consensus 35 ~i~YGl~~il~~i~k~i~il~i~~i~g~~-~~tli~~l~f~~lR~~aGG~Ha~s~~~C 91 (210)
T PRK01100 35 KVKYGLEIILINVSKFAIVYLIALVTGLL-LQTVTVHLSFLWLRRYSFGLHATNSINC 91 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHChH-HHHHHHHHHHHHHHhccCceecCCCcHH
Confidence 46888888777776666666666544432 2333344444455666665444444333
No 65
>COG4035 Predicted membrane protein [Function unknown]
Probab=22.27 E-value=83 Score=25.46 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=25.8
Q ss_pred hCCCCcchHHH----HHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 47 EGFGVSAMWAV----LTVVVVFEFSVGATLGKGLNRVCATLLGGLLGVGAHWL 95 (438)
Q Consensus 47 ~~~~~~~~Wa~----lTvvvv~~ps~G~t~~k~~~Ri~GT~~G~~lg~~~~~l 95 (438)
...+ .+.|.. +..++-|+|.+|. .-|++|.++|.++|..
T Consensus 62 ~~v~-~~~~~ag~flig~v~gMRPGYGR---------~Etv~Gt~LA~l~wL~ 104 (108)
T COG4035 62 RSVP-VPLYMAGCFLIGFVLGMRPGYGR---------VETVVGTFLAVLLWLY 104 (108)
T ss_pred cCCc-hHHHHHHHHHHHHhhccCCCCce---------eehhHHHHHHHHHHHh
Confidence 4455 677865 3444458888886 3567777888877754
No 66
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=22.20 E-value=4.8e+02 Score=28.29 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhhh
Q 046681 165 VTIAIGSCTSLLVCI 179 (438)
Q Consensus 165 ~~i~iG~~ia~~vs~ 179 (438)
.++..|+.++++.+.
T Consensus 393 ~~l~~GV~vGi~ls~ 407 (554)
T COG0659 393 FDLVIGVVVGILLAC 407 (554)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556666666554
No 67
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=21.84 E-value=6.4e+02 Score=23.30 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=31.0
Q ss_pred CccCCcHHHHHHHHHHHHHHHHHHHHHHhchhc-CCCCCCcHHHHHHHHH
Q 046681 257 LKFRHPWKLYLKAGTLTRDCAYKIEALSSHLNS-DYPTPWPEEIQSKIQE 305 (438)
Q Consensus 257 ~~~~~p~~~y~~i~~~~r~~~~~i~aL~~~l~~-~~~~p~~~~l~~~l~~ 305 (438)
|..++..+....+...+..+++.+......+.- ....| ++++..+.+
T Consensus 74 fitP~dReDi~~L~~~lD~I~D~i~~~a~~l~l~~~~~~--~~l~~~~~~ 121 (216)
T TIGR00153 74 AFLPNDRRDLLELAELLDEILDSLEHAAMLYELRKFEFP--EELRDEFLL 121 (216)
T ss_pred ccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--HHHHHHHHH
Confidence 445667788888889999999999888764442 23334 555544444
No 68
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=21.52 E-value=55 Score=22.48 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 046681 81 ATLLGGLLGVGAH 93 (438)
Q Consensus 81 GT~~G~~lg~~~~ 93 (438)
||++|++++-++-
T Consensus 2 G~~~Ga~~Ga~~G 14 (42)
T PF05433_consen 2 GALIGAAVGAVAG 14 (42)
T ss_pred chHHHHHHHHHHH
Confidence 3444444444443
No 69
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=20.84 E-value=1e+02 Score=26.11 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046681 79 VCATLLGGLLGVGAHWL 95 (438)
Q Consensus 79 i~GT~~G~~lg~~~~~l 95 (438)
+.|+++|+++|.+...+
T Consensus 8 l~G~liGgiiGa~aaLL 24 (115)
T COG4980 8 LFGILIGGIIGAAAALL 24 (115)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888888887775533
No 70
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=20.73 E-value=4.1e+02 Score=24.16 Aligned_cols=26 Identities=12% Similarity=-0.000 Sum_probs=17.5
Q ss_pred HHhcccChhHHHHHHHHHHHHHHHHHHHH
Q 046681 61 VVVFEFSVGATLGKGLNRVCATLLGGLLG 89 (438)
Q Consensus 61 vvv~~ps~G~t~~k~~~Ri~GT~~G~~lg 89 (438)
-+.++|.......++. +|+++|.++-
T Consensus 52 ~~ll~Pf~~g~wk~t~---~G~~igi~~~ 77 (173)
T PF11085_consen 52 NFLLEPFALGDWKNTW---LGNLIGIVFI 77 (173)
T ss_pred Chhhhhhhccchhhhh---HHHHHHHHHH
Confidence 3567888888777765 6776665443
No 71
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=20.50 E-value=7.5e+02 Score=23.56 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 046681 138 VFILTFCLVSVSGYREDEVIRMAHERVVTIAIGSCTSLLVCILIC 182 (438)
Q Consensus 138 i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG~~ia~~vs~~i~ 182 (438)
+...++....++++....+......=+.--++|++++.+||.|+.
T Consensus 123 ~t~~~F~~ls~~g~~tk~Dls~l~~~l~~aligLiiasvvn~Fl~ 167 (233)
T COG0670 123 ITALVFGALSLYGYTTKRDLSSLGSFLFMALIGLIIASLVNIFLG 167 (233)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455555556665555555555556677899999999997554
Done!